Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009114
(1024 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039571.1| 3-hydroxyisobutyrate dehydrogenase, mitochon... 587 e-168
Alignment gi|NP_001035658.2| putative oxidoreductase GLYR1 [Bos taurus]. 96 5e-20
Alignment gi|XP_002683981.1| PREDICTED: 2-hydroxy-3-oxopropionate reducta... 96 7e-20
>ref|NP_001039571.1| 3-hydroxyisobutyrate dehydrogenase, mitochondrial precursor [Bos
taurus].
Length = 336
Score = 587 bits (1514), Expect = e-168
Identities = 299/307 (97%), Positives = 300/307 (97%)
Frame = +1
Query: 103 MAASLRLRGAASGLLYWSRRQRPAAASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMK 282
MAASLRLRGAASGL YWSRRQ PA ASL AVCSRSMASKTPVGFIGVGNMGNPMAKNLMK
Sbjct: 1 MAASLRLRGAASGLRYWSRRQPPAVASLAAVCSRSMASKTPVGFIGVGNMGNPMAKNLMK 60
Query: 283 HGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGIL 462
HGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGIL
Sbjct: 61 HGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGIL 120
Query: 463 KKVKKGSLLIDSSTIDPMISKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEE 642
KKVKKGSLLIDSSTIDPM+SKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEE
Sbjct: 121 KKVKKGSLLIDSSTIDPMVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEE 180
Query: 643 EFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLL 822
EFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLL
Sbjct: 181 EFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLL 240
Query: 823 AKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQXGFGTTLMAXDLGLAQDSATSTKKPI 1002
AKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQ GFGTTLMA DLGLAQDSATSTK PI
Sbjct: 241 AKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPI 300
Query: 1003 LLGSQAH 1023
LLGSQAH
Sbjct: 301 LLGSQAH 307
>ref|NP_001035658.2| putative oxidoreductase GLYR1 [Bos taurus].
Length = 553
Score = 95.9 bits (237), Expect = 5e-20
Identities = 69/283 (24%), Positives = 119/283 (42%)
Frame = +1
Query: 175 AASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQ 354
AA AV + +GF+G+G MG+ + NL+K G+ + +++ + C F+ G +
Sbjct: 253 AADSTAVNGSVTPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAR 312
Query: 355 VVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMISKELA 534
+ +PA+V D + A + G +G+L+ ++ G +D ST+D ELA
Sbjct: 313 LGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELA 372
Query: 535 KEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGT 714
+ + G F++APVSG + G L + G + MG + G VG
Sbjct: 373 QVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGN 432
Query: 715 GQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVM 894
+ N++ M AE + L G + L ILN G+ S ++
Sbjct: 433 AAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILN--QGQLASIFLDQKCQNIL 490
Query: 895 DGVPSANNYQXGFGTTLMAXDLGLAQDSATSTKKPILLGSQAH 1023
G N++ F + DL LA + P + + A+
Sbjct: 491 QG-----NFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAAN 528
>ref|XP_002683981.1| PREDICTED: 2-hydroxy-3-oxopropionate reductase-like, partial [Bos
taurus].
Length = 224
Score = 95.5 bits (236), Expect = 7e-20
Identities = 46/135 (34%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
Frame = +1
Query: 433 EAYSGANGILKKVKKGSLLIDSSTIDPMISKELAKEVE-KMGAVFMDAPVSGGVGAARSG 609
E G G+++ K G LL+D S+++P ++E+A ++ + G ++D+PVSGGV A +G
Sbjct: 3 EVVFGTGGVVEGAKNGQLLVDFSSLEPTATREMAADLAGRTGMAWLDSPVSGGVVGAEAG 62
Query: 610 NLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNL 789
+L MVGG + + +L +G V + G +G GQ K CN +++A + + AE + L
Sbjct: 63 SLAIMVGGAVTDLDRVRPVLLNLGQRVTHMGGIGAGQVTKACNQMIVACNALVIAEVVAL 122
Query: 790 GIRLGLDPKLLAKIL 834
+ G+D +L+A+ L
Sbjct: 123 AEQAGVDARLIAEAL 137
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,609,988
Number of extensions: 1086605
Number of successful extensions: 4178
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4162
Number of HSP's successfully gapped: 3
Length of query: 341
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,273,310
Effective search space: 3397047780
Effective search space used: 3397047780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009114
(1024 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536747.2| PREDICTED: similar to 3-hydroxyisobutyrate dehy... 577 e-165
Alignment gi|XP_864752.1| PREDICTED: similar to 3-hydroxyisobutyrate dehy... 435 e-122
Alignment gi|XP_851659.1| PREDICTED: similar to cytokine-like nuclear fac... 96 6e-20
Alignment gi|XP_864126.1| PREDICTED: similar to cytokine-like nuclear fac... 96 6e-20
Alignment gi|XP_864048.1| PREDICTED: similar to cytokine-like nuclear fac... 96 6e-20
Alignment gi|XP_536985.2| PREDICTED: similar to cytokine-like nuclear fac... 96 6e-20
Alignment gi|XP_864082.1| PREDICTED: similar to cytokine-like nuclear fac... 85 1e-16
Alignment gi|XP_864107.1| PREDICTED: similar to cytokine-like nuclear fac... 70 4e-12
>ref|XP_536747.2| PREDICTED: similar to 3-hydroxyisobutyrate dehydrogenase,
mitochondrial precursor (HIBADH) isoform 1 [Canis
familiaris].
Length = 336
Score = 577 bits (1487), Expect = e-165
Identities = 293/307 (95%), Positives = 297/307 (96%)
Frame = +1
Query: 103 MAASLRLRGAASGLLYWSRRQRPAAASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMK 282
MAASLRLR AASGL YWSR QRPAAASL AVCSRSMASKTPVGFIG+GNMGNPMAKNLMK
Sbjct: 1 MAASLRLRAAASGLRYWSRGQRPAAASLAAVCSRSMASKTPVGFIGLGNMGNPMAKNLMK 60
Query: 283 HGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGIL 462
HGYPLIIYDVFPDACKEF DAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGIL
Sbjct: 61 HGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGIL 120
Query: 463 KKVKKGSLLIDSSTIDPMISKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEE 642
KKVKKGSLLIDSSTIDP +SKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVE+
Sbjct: 121 KKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVED 180
Query: 643 EFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLL 822
EFAAAQELLGCMGSNVVYCGAVGTGQAAKICNN+LLAISMIGTAEAMNLGIRLGLDPKLL
Sbjct: 181 EFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLL 240
Query: 823 AKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQXGFGTTLMAXDLGLAQDSATSTKKPI 1002
AKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQ GFG TLMA DLGLAQDSATSTK PI
Sbjct: 241 AKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGATLMAKDLGLAQDSATSTKSPI 300
Query: 1003 LLGSQAH 1023
LLGSQAH
Sbjct: 301 LLGSQAH 307
>ref|XP_864752.1| PREDICTED: similar to 3-hydroxyisobutyrate dehydrogenase,
mitochondrial precursor (HIBADH) isoform 2 [Canis
familiaris].
Length = 264
Score = 435 bits (1119), Expect = e-122
Identities = 222/233 (95%), Positives = 227/233 (97%)
Frame = +1
Query: 103 MAASLRLRGAASGLLYWSRRQRPAAASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMK 282
MAASLRLR AASGL YWSR QRPAAASL AVCSRSMASKTPVGFIG+GNMGNPMAKNLMK
Sbjct: 1 MAASLRLRAAASGLRYWSRGQRPAAASLAAVCSRSMASKTPVGFIGLGNMGNPMAKNLMK 60
Query: 283 HGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGIL 462
HGYPLIIYDVFPDACKEF DAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGIL
Sbjct: 61 HGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGIL 120
Query: 463 KKVKKGSLLIDSSTIDPMISKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEE 642
KKVKKGSLLIDSSTIDP +SKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVE+
Sbjct: 121 KKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVED 180
Query: 643 EFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRL 801
EFAAAQELLGCMGSNVVYCGAVGTGQAAKICNN+LLAISMIGTAEAMNLGIR+
Sbjct: 181 EFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRV 233
>ref|XP_851659.1| PREDICTED: similar to cytokine-like nuclear factor n-pac isoform 2
[Canis familiaris].
Length = 575
Score = 95.9 bits (237), Expect = 6e-20
Identities = 69/283 (24%), Positives = 119/283 (42%)
Frame = +1
Query: 175 AASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQ 354
AA AV + +GF+G+G MG+ + NL+K G+ + +++ + C F+ G +
Sbjct: 275 AADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAR 334
Query: 355 VVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMISKELA 534
+ +PA+V D + A + G +G+L+ ++ G +D ST+D ELA
Sbjct: 335 LGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELA 394
Query: 535 KEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGT 714
+ + G F++APVSG + G L + G + MG + G VG
Sbjct: 395 QVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGN 454
Query: 715 GQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVM 894
+ N++ M AE + L G + L ILN G+ S ++
Sbjct: 455 AAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILN--QGQLASIFLDQKCQNIL 512
Query: 895 DGVPSANNYQXGFGTTLMAXDLGLAQDSATSTKKPILLGSQAH 1023
G N++ F + DL LA + P + + A+
Sbjct: 513 QG-----NFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAAN 550
>ref|XP_864126.1| PREDICTED: similar to cytokine-like nuclear factor n-pac isoform 7
[Canis familiaris].
Length = 579
Score = 95.9 bits (237), Expect = 6e-20
Identities = 69/283 (24%), Positives = 119/283 (42%)
Frame = +1
Query: 175 AASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQ 354
AA AV + +GF+G+G MG+ + NL+K G+ + +++ + C F+ G +
Sbjct: 275 AADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAR 334
Query: 355 VVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMISKELA 534
+ +PA+V D + A + G +G+L+ ++ G +D ST+D ELA
Sbjct: 335 LGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELA 394
Query: 535 KEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGT 714
+ + G F++APVSG + G L + G + MG + G VG
Sbjct: 395 QVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGN 454
Query: 715 GQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVM 894
+ N++ M AE + L G + L ILN G+ S ++
Sbjct: 455 AAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILN--QGQLASIFLDQKCQNIL 512
Query: 895 DGVPSANNYQXGFGTTLMAXDLGLAQDSATSTKKPILLGSQAH 1023
G N++ F + DL LA + P + + A+
Sbjct: 513 QG-----NFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAAN 550
>ref|XP_864048.1| PREDICTED: similar to cytokine-like nuclear factor n-pac isoform 3
[Canis familiaris].
Length = 476
Score = 95.9 bits (237), Expect = 6e-20
Identities = 69/283 (24%), Positives = 119/283 (42%)
Frame = +1
Query: 175 AASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQ 354
AA AV + +GF+G+G MG+ + NL+K G+ + +++ + C F+ G +
Sbjct: 172 AADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAR 231
Query: 355 VVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMISKELA 534
+ +PA+V D + A + G +G+L+ ++ G +D ST+D ELA
Sbjct: 232 LGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELA 291
Query: 535 KEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGT 714
+ + G F++APVSG + G L + G + MG + G VG
Sbjct: 292 QVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGN 351
Query: 715 GQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVM 894
+ N++ M AE + L G + L ILN G+ S ++
Sbjct: 352 AAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILN--QGQLASIFLDQKCQNIL 409
Query: 895 DGVPSANNYQXGFGTTLMAXDLGLAQDSATSTKKPILLGSQAH 1023
G N++ F + DL LA + P + + A+
Sbjct: 410 QG-----NFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAAN 447
>ref|XP_536985.2| PREDICTED: similar to cytokine-like nuclear factor n-pac isoform 1
[Canis familiaris].
Length = 459
Score = 95.9 bits (237), Expect = 6e-20
Identities = 69/283 (24%), Positives = 119/283 (42%)
Frame = +1
Query: 175 AASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQ 354
AA AV + +GF+G+G MG+ + NL+K G+ + +++ + C F+ G +
Sbjct: 155 AADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAR 214
Query: 355 VVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMISKELA 534
+ +PA+V D + A + G +G+L+ ++ G +D ST+D ELA
Sbjct: 215 LGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELA 274
Query: 535 KEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGT 714
+ + G F++APVSG + G L + G + MG + G VG
Sbjct: 275 QVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGN 334
Query: 715 GQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVM 894
+ N++ M AE + L G + L ILN G+ S ++
Sbjct: 335 AAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILN--QGQLASIFLDQKCQNIL 392
Query: 895 DGVPSANNYQXGFGTTLMAXDLGLAQDSATSTKKPILLGSQAH 1023
G N++ F + DL LA + P + + A+
Sbjct: 393 QG-----NFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAAN 430
>ref|XP_864082.1| PREDICTED: similar to cytokine-like nuclear factor n-pac isoform 5
[Canis familiaris].
Length = 547
Score = 85.1 bits (209), Expect = 1e-16
Identities = 70/283 (24%), Positives = 118/283 (41%)
Frame = +1
Query: 175 AASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQ 354
AA AV + +GF+G+G MG+ + NL+K G+ + +++ A KE G +
Sbjct: 253 AADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWN--RTAEKE----GAR 306
Query: 355 VVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMISKELA 534
+ +PA+V D + A + G +G+L+ ++ G +D ST+D ELA
Sbjct: 307 LGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELA 366
Query: 535 KEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGT 714
+ + G F++APVSG + G L + G + MG + G VG
Sbjct: 367 QVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGN 426
Query: 715 GQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVM 894
+ N++ M AE + L G + L ILN G+ S ++
Sbjct: 427 AAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILN--QGQLASIFLDQKCQNIL 484
Query: 895 DGVPSANNYQXGFGTTLMAXDLGLAQDSATSTKKPILLGSQAH 1023
G N++ F + DL LA + P + + A+
Sbjct: 485 QG-----NFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAAN 522
>ref|XP_864107.1| PREDICTED: similar to cytokine-like nuclear factor n-pac isoform 6
[Canis familiaris].
Length = 520
Score = 69.7 bits (169), Expect = 4e-12
Identities = 62/283 (21%), Positives = 108/283 (38%)
Frame = +1
Query: 175 AASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQ 354
AA AV + +GF+G+G MG+ + NL+K G+ + +++
Sbjct: 253 AADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWN--------------- 297
Query: 355 VVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMISKELA 534
A++++ G +G+L+ ++ G +D ST+D ELA
Sbjct: 298 ---------RTAEKLVL-------------GPSGVLQGIRPGKCYVDMSTVDADTVTELA 335
Query: 535 KEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGT 714
+ + G F++APVSG + G L + G + MG + G VG
Sbjct: 336 QVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGN 395
Query: 715 GQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVM 894
+ N++ M AE + L G + L ILN G+ S ++
Sbjct: 396 AAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILN--QGQLASIFLDQKCQNIL 453
Query: 895 DGVPSANNYQXGFGTTLMAXDLGLAQDSATSTKKPILLGSQAH 1023
G N++ F + DL LA + P + + A+
Sbjct: 454 QG-----NFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAAN 491
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,297,266
Number of extensions: 1116918
Number of successful extensions: 4450
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4434
Number of HSP's successfully gapped: 8
Length of query: 341
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 238
Effective length of database: 15,440,896
Effective search space: 3674933248
Effective search space used: 3674933248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009114
(1024 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134875.2| PREDICTED: 3-hydroxyisobutyrate dehydrogenas... 539 e-153
Alignment gi|XP_003134876.2| PREDICTED: 3-hydroxyisobutyrate dehydrogenas... 283 8e-77
Alignment gi|XP_003354669.1| PREDICTED: putative oxidoreductase GLYR1 iso... 96 3e-20
Alignment gi|XP_003354668.1| PREDICTED: putative oxidoreductase GLYR1 iso... 96 3e-20
Alignment gi|XP_003124675.2| PREDICTED: putative oxidoreductase GLYR1 iso... 85 6e-17
>ref|XP_003134875.2| PREDICTED: 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like,
partial [Sus scrofa].
Length = 305
Score = 539 bits (1388), Expect = e-153
Identities = 273/276 (98%), Positives = 273/276 (98%)
Frame = +1
Query: 196 CSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPAD 375
CSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPAD
Sbjct: 1 CSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPAD 60
Query: 376 VAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMISKELAKEVEKMG 555
VAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMISKELAKEVEKMG
Sbjct: 61 VAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMISKELAKEVEKMG 120
Query: 556 AVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKIC 735
AVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKIC
Sbjct: 121 AVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKIC 180
Query: 736 NNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSAN 915
NNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSAN
Sbjct: 181 NNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSAN 240
Query: 916 NYQXGFGTTLMAXDLGLAQDSATSTKKPILLGSQAH 1023
NYQ GFGTTLMA DLGLAQDSATSTK PILLGSQAH
Sbjct: 241 NYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSQAH 276
>ref|XP_003134876.2| PREDICTED: 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like,
partial [Sus scrofa].
Length = 174
Score = 283 bits (725), Expect = 8e-77
Identities = 142/145 (97%), Positives = 142/145 (97%)
Frame = +1
Query: 589 VGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIG 768
VGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIG
Sbjct: 1 VGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIG 60
Query: 769 TAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQXGFGTTLM 948
TAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQ GFGTTLM
Sbjct: 61 TAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLM 120
Query: 949 AXDLGLAQDSATSTKKPILLGSQAH 1023
A DLGLAQDSATSTK PILLGSQAH
Sbjct: 121 AKDLGLAQDSATSTKSPILLGSQAH 145
>ref|XP_003354669.1| PREDICTED: putative oxidoreductase GLYR1 isoform 3 [Sus scrofa].
Length = 472
Score = 95.9 bits (237), Expect = 3e-20
Identities = 69/283 (24%), Positives = 119/283 (42%)
Frame = +1
Query: 175 AASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQ 354
AA AV + +GF+G+G MG+ + NL+K G+ + +++ + C F+ G +
Sbjct: 172 AADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAR 231
Query: 355 VVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMISKELA 534
+ +PA+V D + A + G +G+L+ ++ G +D ST+D ELA
Sbjct: 232 LGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELA 291
Query: 535 KEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGT 714
+ + G F++APVSG + G L + G + MG + G VG
Sbjct: 292 QVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGN 351
Query: 715 GQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVM 894
+ N++ M AE + L G + L ILN G+ S ++
Sbjct: 352 AAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILN--QGQLASIFLDQKCQNIL 409
Query: 895 DGVPSANNYQXGFGTTLMAXDLGLAQDSATSTKKPILLGSQAH 1023
G N++ F + DL LA + P + + A+
Sbjct: 410 QG-----NFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAAN 447
>ref|XP_003354668.1| PREDICTED: putative oxidoreductase GLYR1 isoform 2 [Sus scrofa].
Length = 553
Score = 95.9 bits (237), Expect = 3e-20
Identities = 69/283 (24%), Positives = 119/283 (42%)
Frame = +1
Query: 175 AASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQ 354
AA AV + +GF+G+G MG+ + NL+K G+ + +++ + C F+ G +
Sbjct: 253 AADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAR 312
Query: 355 VVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMISKELA 534
+ +PA+V D + A + G +G+L+ ++ G +D ST+D ELA
Sbjct: 313 LGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELA 372
Query: 535 KEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGT 714
+ + G F++APVSG + G L + G + MG + G VG
Sbjct: 373 QVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGN 432
Query: 715 GQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVM 894
+ N++ M AE + L G + L ILN G+ S ++
Sbjct: 433 AAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILN--QGQLASIFLDQKCQNIL 490
Query: 895 DGVPSANNYQXGFGTTLMAXDLGLAQDSATSTKKPILLGSQAH 1023
G N++ F + DL LA + P + + A+
Sbjct: 491 QG-----NFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAAN 528
>ref|XP_003124675.2| PREDICTED: putative oxidoreductase GLYR1 isoform 1 [Sus scrofa].
Length = 547
Score = 85.1 bits (209), Expect = 6e-17
Identities = 70/283 (24%), Positives = 118/283 (41%)
Frame = +1
Query: 175 AASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQ 354
AA AV + +GF+G+G MG+ + NL+K G+ + +++ A KE G +
Sbjct: 253 AADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWN--RTAEKE----GAR 306
Query: 355 VVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMISKELA 534
+ +PA+V D + A + G +G+L+ ++ G +D ST+D ELA
Sbjct: 307 LGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELA 366
Query: 535 KEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGT 714
+ + G F++APVSG + G L + G + MG + G VG
Sbjct: 367 QVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGN 426
Query: 715 GQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVM 894
+ N++ M AE + L G + L ILN G+ S ++
Sbjct: 427 AAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILN--QGQLASIFLDQKCQNIL 484
Query: 895 DGVPSANNYQXGFGTTLMAXDLGLAQDSATSTKKPILLGSQAH 1023
G N++ F + DL LA + P + + A+
Sbjct: 485 QG-----NFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAAN 522
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,514,808
Number of extensions: 693629
Number of successful extensions: 2685
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2678
Number of HSP's successfully gapped: 5
Length of query: 341
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 241
Effective length of database: 8,854,232
Effective search space: 2133869912
Effective search space used: 2133869912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009114
(1024 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663542.1| 3-hydroxyisobutyrate dehydrogenase, mitochondri... 541 e-154
Alignment gi|NP_001073282.1| putative oxidoreductase GLYR1 isoform 1 [Mus... 96 5e-20
Alignment gi|NP_082996.2| putative oxidoreductase GLYR1 isoform 2 [Mus mu... 85 8e-17
>ref|NP_663542.1| 3-hydroxyisobutyrate dehydrogenase, mitochondrial precursor [Mus
musculus].
Length = 335
Score = 541 bits (1394), Expect = e-154
Identities = 274/307 (89%), Positives = 287/307 (93%)
Frame = +1
Query: 103 MAASLRLRGAASGLLYWSRRQRPAAASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMK 282
MAASL RGAASGL YWS R+RP SL AVCSRSMASKTPVGFIG+GNMGNPMAKNLMK
Sbjct: 1 MAASLGFRGAASGLWYWSGRRRPVG-SLAAVCSRSMASKTPVGFIGLGNMGNPMAKNLMK 59
Query: 283 HGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGIL 462
HGYPLI+YDVFPD CKEF +AGEQV SSPA+VAEKADRIITMLP+S+NA+E YSGANGIL
Sbjct: 60 HGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEKADRIITMLPSSMNAVEVYSGANGIL 119
Query: 463 KKVKKGSLLIDSSTIDPMISKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEE 642
KKVKKGSLLIDSSTIDP +SKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVE+
Sbjct: 120 KKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVED 179
Query: 643 EFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLL 822
EFAAAQELL CMGSNVVYCGAVGTGQ+AKICNN+LLAISMIGTAEAMNLGIR GLDPKLL
Sbjct: 180 EFAAAQELLECMGSNVVYCGAVGTGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLL 239
Query: 823 AKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQXGFGTTLMAXDLGLAQDSATSTKKPI 1002
AKILNMSSGRCWSSDTYNPVPGVM GVPS+NNYQ GFGTTLMA DLGLAQDSATSTK PI
Sbjct: 240 AKILNMSSGRCWSSDTYNPVPGVMHGVPSSNNYQGGFGTTLMAKDLGLAQDSATSTKTPI 299
Query: 1003 LLGSQAH 1023
LLGS AH
Sbjct: 300 LLGSLAH 306
>ref|NP_001073282.1| putative oxidoreductase GLYR1 isoform 1 [Mus musculus].
Length = 552
Score = 95.9 bits (237), Expect = 5e-20
Identities = 69/283 (24%), Positives = 119/283 (42%)
Frame = +1
Query: 175 AASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQ 354
AA AV + +GF+G+G MG+ + NL+K G+ + +++ + C F+ G +
Sbjct: 252 AADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAR 311
Query: 355 VVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMISKELA 534
+ +PA+V D + A + G +G+L+ ++ G +D ST+D ELA
Sbjct: 312 LGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELA 371
Query: 535 KEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGT 714
+ + G F++APVSG + G L + G + MG + G VG
Sbjct: 372 QVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGN 431
Query: 715 GQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVM 894
+ N++ M AE + L G + L ILN G+ S ++
Sbjct: 432 AAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILN--QGQLASIFLDQKCQNIL 489
Query: 895 DGVPSANNYQXGFGTTLMAXDLGLAQDSATSTKKPILLGSQAH 1023
G N++ F + DL LA + P + + A+
Sbjct: 490 QG-----NFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAAN 527
>ref|NP_082996.2| putative oxidoreductase GLYR1 isoform 2 [Mus musculus].
Length = 546
Score = 85.1 bits (209), Expect = 8e-17
Identities = 70/283 (24%), Positives = 118/283 (41%)
Frame = +1
Query: 175 AASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQ 354
AA AV + +GF+G+G MG+ + NL+K G+ + +++ A KE G +
Sbjct: 252 AADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWN--RTAEKE----GAR 305
Query: 355 VVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMISKELA 534
+ +PA+V D + A + G +G+L+ ++ G +D ST+D ELA
Sbjct: 306 LGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELA 365
Query: 535 KEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGT 714
+ + G F++APVSG + G L + G + MG + G VG
Sbjct: 366 QVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGN 425
Query: 715 GQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVM 894
+ N++ M AE + L G + L ILN G+ S ++
Sbjct: 426 AAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILN--QGQLASIFLDQKCQNIL 483
Query: 895 DGVPSANNYQXGFGTTLMAXDLGLAQDSATSTKKPILLGSQAH 1023
G N++ F + DL LA + P + + A+
Sbjct: 484 QG-----NFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAAN 521
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,358,779
Number of extensions: 923432
Number of successful extensions: 3226
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3217
Number of HSP's successfully gapped: 3
Length of query: 341
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 239
Effective length of database: 12,553,887
Effective search space: 3000378993
Effective search space used: 3000378993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009114
(1024 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_689953.1| 3-hydroxyisobutyrate dehydrogenase, mitochondri... 571 e-163
Alignment gi|NP_115958.2| putative oxidoreductase GLYR1 [Homo sapiens]. 96 5e-20
>ref|NP_689953.1| 3-hydroxyisobutyrate dehydrogenase, mitochondrial precursor [Homo
sapiens].
Length = 336
Score = 571 bits (1472), Expect = e-163
Identities = 290/307 (94%), Positives = 295/307 (96%)
Frame = +1
Query: 103 MAASLRLRGAASGLLYWSRRQRPAAASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMK 282
MAASLRL GAASGL YWSRR RPAA S AVCSRS+ASKTPVGFIG+GNMGNPMAKNLMK
Sbjct: 1 MAASLRLLGAASGLRYWSRRLRPAAGSFAAVCSRSVASKTPVGFIGLGNMGNPMAKNLMK 60
Query: 283 HGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGIL 462
HGYPLIIYDVFPDACKEF DAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGIL
Sbjct: 61 HGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGIL 120
Query: 463 KKVKKGSLLIDSSTIDPMISKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEE 642
KKVKKGSLLIDSSTIDP +SKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVE+
Sbjct: 121 KKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVED 180
Query: 643 EFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLL 822
EFAAAQELLGCMGSNVVYCGAVGTGQAAKICNN+LLAISMIGTAEAMNLGIRLGLDPKLL
Sbjct: 181 EFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLL 240
Query: 823 AKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQXGFGTTLMAXDLGLAQDSATSTKKPI 1002
AKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQ GFGTTLMA DLGLAQDSATSTK PI
Sbjct: 241 AKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPI 300
Query: 1003 LLGSQAH 1023
LLGS AH
Sbjct: 301 LLGSLAH 307
>ref|NP_115958.2| putative oxidoreductase GLYR1 [Homo sapiens].
Length = 553
Score = 95.9 bits (237), Expect = 5e-20
Identities = 69/283 (24%), Positives = 119/283 (42%)
Frame = +1
Query: 175 AASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQ 354
AA AV + +GF+G+G MG+ + NL+K G+ + +++ + C F+ G +
Sbjct: 253 AADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAR 312
Query: 355 VVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMISKELA 534
+ +PA+V D + A + G +G+L+ ++ G +D ST+D ELA
Sbjct: 313 LGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELA 372
Query: 535 KEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGT 714
+ + G F++APVSG + G L + G + MG + G VG
Sbjct: 373 QVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGN 432
Query: 715 GQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVM 894
+ N++ M AE + L G + L ILN G+ S ++
Sbjct: 433 AAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILN--QGQLASIFLDQKCQNIL 490
Query: 895 DGVPSANNYQXGFGTTLMAXDLGLAQDSATSTKKPILLGSQAH 1023
G N++ F + DL LA + P + + A+
Sbjct: 491 QG-----NFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAAN 528
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,532,444
Number of extensions: 1100152
Number of successful extensions: 4006
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3996
Number of HSP's successfully gapped: 2
Length of query: 341
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,901,872
Effective search space: 3546645536
Effective search space used: 3546645536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009114
(1024 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 375 e-101
Sscrofa_Chr05 192 3e-46
>Sscrofa_Chr18
|| Length = 61220071
Score = 375 bits (189), Expect = e-101
Identities = 192/193 (99%)
Strand = Plus / Plus
Query: 1 acacgccgcagctgagcccgcccgccgcacctcgcaccctagcagtcagtgggtgagccg 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 49444226 acacgccgcagctgagcccgcccgccgcaccacgcaccctagcagtcagtgggtgagccg 49444285
Query: 61 ggagccgaggaggtcaccgtggggaggcggggcgggggcagcatggcagcctccttacgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49444286 ggagccgaggaggtcaccgtggggaggcggggcgggggcagcatggcagcctccttacgg 49444345
Query: 121 ctccgtggagccgcctctggcctcctgtactggagccgccggcagcggccggcagcggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49444346 ctccgtggagccgcctctggcctcctgtactggagccgccggcagcggccggcagcggcc 49444405
Query: 181 agccttgtagcgg 193
|||||||||||||
Sbjct: 49444406 agccttgtagcgg 49444418
Score = 327 bits (165), Expect = 7e-87
Identities = 165/165 (100%)
Strand = Plus / Plus
Query: 193 gtgtgttctaggtcaatggcttctaagactccagttggattcattggtgtaggcaacatg 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49455063 gtgtgttctaggtcaatggcttctaagactccagttggattcattggtgtaggcaacatg 49455122
Query: 253 gggaatccaatggcaaaaaatctcatgaaacatggctatccactcattatttatgatgtg 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49455123 gggaatccaatggcaaaaaatctcatgaaacatggctatccactcattatttatgatgtg 49455182
Query: 313 ttccctgatgcatgcaaagagtttctagatgcgggtgaacaggta 357
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49455183 ttccctgatgcatgcaaagagtttctagatgcgggtgaacaggta 49455227
Score = 301 bits (152), Expect = 4e-79
Identities = 157/159 (98%)
Strand = Plus / Minus
Query: 795 caggttagggcttgacccaaaactcttggctaaaatcctgaatatgagttcagggcggtg 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49636864 caggttagggcttgacccaaaactcttggctaaaatcctgaatatgagttcagggcggtg 49636805
Query: 855 ttggtcaagtgacacttacaatcctgtacctggggtgatggatggagttccctcggctaa 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49636804 ttggtcaagtgacacttacaatcctgtacctggggtgatggatggagttccctcggctaa 49636745
Query: 915 taactatcaggncggattcggaacaacgctcatggctaa 953
|||||||||| |||||||||||||||||||||||||||
Sbjct: 49636744 caactatcagggcggattcggaacaacgctcatggctaa 49636706
Score = 262 bits (132), Expect = 3e-67
Identities = 135/136 (99%)
Strand = Plus / Minus
Query: 586 ggtgtgggagctgctcggtctgggaacctcacgtttatggtgggaggagttgaagaggaa 645
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49645334 ggtgtgggagctgctcgatctgggaacctcacgtttatggtgggaggagttgaagaggaa 49645275
Query: 646 tttgctgctgcccaagagctgctgggatgcatgggctccaatgtggtgtattgtggagct 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49645274 tttgctgctgcccaagagctgctgggatgcatgggctccaatgtggtgtattgtggagct 49645215
Query: 706 gttgggaccgggcagg 721
||||||||||||||||
Sbjct: 49645214 gttgggaccgggcagg 49645199
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 469 gtgaagaaaggctcattgttaatagattccagtactattgatcctatgatttcaaaagag 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49469072 gtgaagaaaggctcattgttaatagattccagtactattgatcctatgatttcaaaagag 49469131
Query: 529 ttggccaaagaagttgagaaaatgggagcagttttcatggatgcccctgtttctggcggt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49469132 ttggccaaagaagttgagaaaatgggagcagttttcatggatgcccctgtttctggcggt 49469191
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 353 aggtagtgtcttccccagcagatgtggctgaaaaagctgacagaattattacaatgttac 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49466482 aggtagtgtcttccccagcagatgtggctgaaaaagctgacagaattattacaatgttac 49466541
Query: 413 ccaccagtatcaatgcaatagaagcttattctggagcaaatggaattct 461
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49466542 ccaccagtatcaatgcaatagaagcttattctggagcaaatggaattct 49466590
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 718 caggctgcaaagatatgcaacaacttgctgttagctataagtatgattggaactgctgaa 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49643597 caggctgcaaagatatgcaacaacttgctgttagctataagtatgattggaactgctgaa 49643538
Query: 778 gctatgaatctgggaatcaggtt 800
|||||||||||||||||||||||
Sbjct: 49643537 gctatgaatctgggaatcaggtt 49643515
Score = 99.6 bits (50), Expect = 3e-18
Identities = 65/70 (92%)
Strand = Plus / Minus
Query: 955 gatctggggctagcgcaagactctgccaccagcacgaagaagcccatccttctgggtagt 1014
|||||||| ||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 49631474 gatctgggcctagcgcaagactctgccaccagcacgaagagcccaatccttctgggcagt 49631415
Query: 1015 caagcccatc 1024
||||||||||
Sbjct: 49631414 caagcccatc 49631405
>Sscrofa_Chr05
|| Length = 111506441
Score = 192 bits (97), Expect = 3e-46
Identities = 273/330 (82%), Gaps = 15/330 (4%)
Strand = Plus / Plus
Query: 518 tttcaaaagagttggccaaagaagttgagaaaatgggagcagttttcatggatgcccctg 577
|||||||||| ||| |||||||||||||||||| | ||||| ||||||| ||||||| ||
Sbjct: 19092562 tttcaaaagaattgaccaaagaagttgagaaaaggtgagcaattttcatagatgcccttg 19092621
Query: 578 tttctg--gcggt--gtgggagctgctcggtctgggaacctcacgtttatggtgggagga 633
|||||| ||||| || ||| ||||||| |||||| ||| | | ||||||||||||||
Sbjct: 19092622 tttctgttgcggtcggtcggaactgctcgacctgggagcctaatggttatggtgggagga 19092681
Query: 634 gttgaagaggaatttgctgctgcccaagagctgctggga-tgcatgggctccaatgtggt 692
|| |||| |||||||||||||| |||||| ||||||| ||||||||||||
Sbjct: 19092682 gtcaaagacgaatttgctgctgctcaagaggtgctgggggtgcatgggctccg------- 19092734
Query: 693 gtattgtggagctgttgggaccgggcaggctgcaaagatatgcaacaacttgctgttagc 752
||||||||| || || | || ||||||||| ||| ||| |||| ||||||||||
Sbjct: 19092735 ---ttgtggagcccttagggctggataggctgcaaggatctgccacaatatgctgttagc 19092791
Query: 753 tataagtatgattggaactgctgaagctatgaatctgggaatcaggttagggcttgaccc 812
||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 19092792 tattcatatgattggaactgctgaagatgtgaatctgggaatcaggttagggcttgaccc 19092851
Query: 813 aaaactcttggctaaaatcctgaatatgag 842
|||||| |||||||||||||| | ||||||
Sbjct: 19092852 aaaactattggctaaaatcctaactatgag 19092881
Score = 165 bits (83), Expect = 6e-38
Identities = 223/266 (83%), Gaps = 14/266 (5%)
Strand = Plus / Plus
Query: 202 aggtcaatggcttctaagactccagttggattcattggtgtaggcaacatggggaatcca 261
||||||||| | | |||| |||||| |||||||| ||| ||||||| |||||| |||||
Sbjct: 19092261 aggtcaatgacatttaagtctccagctggattcagtggactaggcaa-atggggcatcca 19092319
Query: 262 atggcaaaaaatc-----tcatgaaacatggctatccactcattatttatgatgtgttcc 316
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19092320 atggaaaaaaaaaaaaattcatgaaacatggctatccactcattatttatgatgtgttcc 19092379
Query: 317 ctgatgcatgcaaagagttt-ctagatgcgggtgaacaggtagtgtcttccccagcagat 375
|||||||| |||||| |||||||| |||||| | ||||||||| || | |||||
Sbjct: 19092380 ctgatgca------gagttttctagatgcaagtgaactg-tagtgtctttcctaacagat 19092432
Query: 376 gtggctgaaaaagctgacagaattattacaatgttacccaccagtatcaatgcaatagaa 435
| ||||||||| |||||||||||||||||||||| |||||||||| |||||| |||
Sbjct: 19092433 gaagctgaaaaatctgacagaattattacaatgttgcccaccagtactggtgcaatggaa 19092492
Query: 436 gcttattctggagcaaatggaattct 461
|||||||||||| |||||| ||||||
Sbjct: 19092493 gcttattctggaacaaatgaaattct 19092518
Score = 61.9 bits (31), Expect = 6e-07
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 889 gtgatggatggagttccctcggctaataactatcaggncggattcggaacaacgctcatg 948
|||||||||||||| ||| | ||||||||||||||| ||| || || |||| ||||||
Sbjct: 19092906 gtgatggatggagtatccttgcctaataactatcagggtggactcagagcaacactcatg 19092965
Query: 949 gctaangatctggggctagcgcaagactc 977
|||| |||||||| |||| ||||||||
Sbjct: 19092966 actaaggatctgggattagcacaagactc 19092994
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,302,983
Number of extensions: 203
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 13
Length of query: 1024
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1003
Effective length of database: 2,808,413,156
Effective search space: 2816838395468
Effective search space used: 2816838395468
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)