Animal-Genome cDNA 20110601C-009132


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009132
         (1479 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_002690406.1| PREDICTED: AT rich interactive domain 1B (SW...   238   8e-63
Alignment   gi|XP_002705293.1| PREDICTED: AT rich interactive domain 1B (SW...   238   8e-63
Alignment   gi|NP_001192714.1| AT-rich interactive domain-containing protei...   117   3e-26
Alignment   gi|XP_002685807.1| PREDICTED: AT rich interactive domain 1A-lik...   117   3e-26
Alignment   gi|XP_002703781.1| PREDICTED: AT rich interactive domain 1A [Bo...   117   3e-26

>ref|XP_002690406.1| PREDICTED: AT rich interactive domain 1B (SWI1-like) [Bos taurus].
          Length = 1808

 Score =  238 bits (608), Expect = 8e-63
 Identities = 112/130 (86%), Positives = 116/130 (89%)
 Frame = +1

Query: 151 ALSQSPMPQERGFMAGTQRNPQMSQYGAQQTXXXXXXXXXXXXQMHPGISSFQQSNSSGT 330
           ALSQSPMPQERGFMAGTQRNPQMSQYG QQT            QMHPGISSFQQSNSSGT
Sbjct: 277 ALSQSPMPQERGFMAGTQRNPQMSQYGPQQTGPSMSPHPSPGGQMHPGISSFQQSNSSGT 336

Query: 331 YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGMGINANNQMHGQGPSQPCGALPLGRM 510
           YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGP MG+NAN+QMHGQGPSQPCGA+PLGR+
Sbjct: 337 YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPSMGVNANSQMHGQGPSQPCGAMPLGRV 396

Query: 511 PSAGMQNRPF 540
           PSAGMQNRPF
Sbjct: 397 PSAGMQNRPF 406


>ref|XP_002705293.1| PREDICTED: AT rich interactive domain 1B (SWI1-like) [Bos taurus].
          Length = 1799

 Score =  238 bits (608), Expect = 8e-63
 Identities = 112/130 (86%), Positives = 116/130 (89%)
 Frame = +1

Query: 151 ALSQSPMPQERGFMAGTQRNPQMSQYGAQQTXXXXXXXXXXXXQMHPGISSFQQSNSSGT 330
           ALSQSPMPQERGFMAGTQRNPQMSQYG QQT            QMHPGISSFQQSNSSGT
Sbjct: 277 ALSQSPMPQERGFMAGTQRNPQMSQYGPQQTGPSMSPHPSPGGQMHPGISSFQQSNSSGT 336

Query: 331 YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGMGINANNQMHGQGPSQPCGALPLGRM 510
           YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGP MG+NAN+QMHGQGPSQPCGA+PLGR+
Sbjct: 337 YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPSMGVNANSQMHGQGPSQPCGAMPLGRV 396

Query: 511 PSAGMQNRPF 540
           PSAGMQNRPF
Sbjct: 397 PSAGMQNRPF 406


>ref|NP_001192714.1| AT-rich interactive domain-containing protein 1A [Bos taurus].
          Length = 2286

 Score =  117 bits (292), Expect = 3e-26
 Identities = 63/133 (47%), Positives = 79/133 (59%), Gaps = 3/133 (2%)
 Frame = +1

Query: 151  ALSQSPMPQERGFMAGTQRNPQMSQYGAQQTXXXXXXXXXXXXQMHPGISSFQQSNSSGT 330
            +++QS + Q+RG+M   QRNPQM QY + Q             QMH G+ S+QQ NS G+
Sbjct: 743  SMNQSSIAQDRGYM---QRNPQMPQYSSPQPGSALSPRQPSGGQMHTGMGSYQQ-NSMGS 798

Query: 331  YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGMGIN---ANNQMHGQGPSQPCGALPL 501
            YGPQ SQYGPQG Y R P Y+ +P+A+Y   G    +N   A  QMHGQ    P G LP 
Sbjct: 799  YGPQGSQYGPQGGYPRQPNYNALPNANYPSAGMAGSMNPMGAGGQMHGQPGIPPYGTLPP 858

Query: 502  GRMPSAGMQNRPF 540
            GRM  A M NRP+
Sbjct: 859  GRMSHASMGNRPY 871


>ref|XP_002685807.1| PREDICTED: AT rich interactive domain 1A-like, partial [Bos
           taurus].
          Length = 2092

 Score =  117 bits (292), Expect = 3e-26
 Identities = 63/133 (47%), Positives = 79/133 (59%), Gaps = 3/133 (2%)
 Frame = +1

Query: 151 ALSQSPMPQERGFMAGTQRNPQMSQYGAQQTXXXXXXXXXXXXQMHPGISSFQQSNSSGT 330
           +++QS + Q+RG+M   QRNPQM QY + Q             QMH G+ S+QQ NS G+
Sbjct: 549 SMNQSSIAQDRGYM---QRNPQMPQYSSPQPGSALSPRQPSGGQMHTGMGSYQQ-NSMGS 604

Query: 331 YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGMGIN---ANNQMHGQGPSQPCGALPL 501
           YGPQ SQYGPQG Y R P Y+ +P+A+Y   G    +N   A  QMHGQ    P G LP 
Sbjct: 605 YGPQGSQYGPQGGYPRQPNYNALPNANYPSAGMAGSMNPMGAGGQMHGQPGIPPYGTLPP 664

Query: 502 GRMPSAGMQNRPF 540
           GRM  A M NRP+
Sbjct: 665 GRMSHASMGNRPY 677


>ref|XP_002703781.1| PREDICTED: AT rich interactive domain 1A [Bos taurus].
          Length = 2069

 Score =  117 bits (292), Expect = 3e-26
 Identities = 63/133 (47%), Positives = 79/133 (59%), Gaps = 3/133 (2%)
 Frame = +1

Query: 151  ALSQSPMPQERGFMAGTQRNPQMSQYGAQQTXXXXXXXXXXXXQMHPGISSFQQSNSSGT 330
            +++QS + Q+RG+M   QRNPQM QY + Q             QMH G+ S+QQ NS G+
Sbjct: 743  SMNQSSIAQDRGYM---QRNPQMPQYSSPQPGSALSPRQPSGGQMHTGMGSYQQ-NSMGS 798

Query: 331  YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGMGIN---ANNQMHGQGPSQPCGALPL 501
            YGPQ SQYGPQG Y R P Y+ +P+A+Y   G    +N   A  QMHGQ    P G LP 
Sbjct: 799  YGPQGSQYGPQGGYPRQPNYNALPNANYPSAGMAGSMNPMGAGGQMHGQPGIPPYGTLPP 858

Query: 502  GRMPSAGMQNRPF 540
            GRM  A M NRP+
Sbjct: 859  GRMSHASMGNRPY 871


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,915,292
Number of extensions: 1553528
Number of successful extensions: 5263
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5206
Number of HSP's successfully gapped: 5
Length of query: 493
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 387
Effective length of database: 14,174,046
Effective search space: 5485355802
Effective search space used: 5485355802
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009132
         (1479 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_541164.2| PREDICTED: similar to AT rich interactive domai...   231   2e-60
Alignment   gi|XP_865949.1| PREDICTED: similar to AT rich interactive domai...   117   4e-26
Alignment   gi|XP_865927.1| PREDICTED: similar to AT rich interactive domai...   117   4e-26
Alignment   gi|XP_852546.1| PREDICTED: similar to AT-rich interactive domai...   117   4e-26

>ref|XP_541164.2| PREDICTED: similar to AT rich interactive domain 1B (SWI1-like)
           isoform 1 [Canis familiaris].
          Length = 1918

 Score =  231 bits (588), Expect = 2e-60
 Identities = 112/130 (86%), Positives = 113/130 (86%)
 Frame = +1

Query: 151 ALSQSPMPQERGFMAGTQRNPQMSQYGAQQTXXXXXXXXXXXXQMHPGISSFQQSNSSGT 330
           ALSQSPMPQERG    TQRNPQMSQYG QQT            QMHPGISSFQQSNSSGT
Sbjct: 467 ALSQSPMPQERG----TQRNPQMSQYGPQQTGPSMSPHPSPGGQMHPGISSFQQSNSSGT 522

Query: 331 YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGMGINANNQMHGQGPSQPCGALPLGRM 510
           YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGMGINANNQMHGQGPSQPCGA+PLGRM
Sbjct: 523 YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGMGINANNQMHGQGPSQPCGAMPLGRM 582

Query: 511 PSAGMQNRPF 540
           PSAGMQNRPF
Sbjct: 583 PSAGMQNRPF 592


>ref|XP_865949.1| PREDICTED: similar to AT rich interactive domain 1A (SWI- like)
            isoform b isoform 3 [Canis familiaris].
          Length = 2138

 Score =  117 bits (292), Expect = 4e-26
 Identities = 63/133 (47%), Positives = 79/133 (59%), Gaps = 3/133 (2%)
 Frame = +1

Query: 151  ALSQSPMPQERGFMAGTQRNPQMSQYGAQQTXXXXXXXXXXXXQMHPGISSFQQSNSSGT 330
            +++QS + Q+RG+M   QRNPQM QY + Q             QMH G+ S+QQ NS G+
Sbjct: 741  SMNQSSIAQDRGYM---QRNPQMPQYSSPQPGSALSPRQPSGGQMHTGMGSYQQ-NSMGS 796

Query: 331  YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGMGIN---ANNQMHGQGPSQPCGALPL 501
            YGPQ SQYGPQG Y R P Y+ +P+A+Y   G    +N   A  QMHGQ    P G LP 
Sbjct: 797  YGPQGSQYGPQGGYPRQPNYNALPNANYPSAGMAGSMNPMGAGGQMHGQPGIPPYGTLPP 856

Query: 502  GRMPSAGMQNRPF 540
            GRM  A M NRP+
Sbjct: 857  GRMSHASMGNRPY 869


>ref|XP_865927.1| PREDICTED: similar to AT rich interactive domain 1A (SWI- like)
            isoform c isoform 2 [Canis familiaris].
          Length = 1374

 Score =  117 bits (292), Expect = 4e-26
 Identities = 63/133 (47%), Positives = 79/133 (59%), Gaps = 3/133 (2%)
 Frame = +1

Query: 151  ALSQSPMPQERGFMAGTQRNPQMSQYGAQQTXXXXXXXXXXXXQMHPGISSFQQSNSSGT 330
            +++QS + Q+RG+M   QRNPQM QY + Q             QMH G+ S+QQ NS G+
Sbjct: 741  SMNQSSIAQDRGYM---QRNPQMPQYSSPQPGSALSPRQPSGGQMHTGMGSYQQ-NSMGS 796

Query: 331  YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGMGIN---ANNQMHGQGPSQPCGALPL 501
            YGPQ SQYGPQG Y R P Y+ +P+A+Y   G    +N   A  QMHGQ    P G LP 
Sbjct: 797  YGPQGSQYGPQGGYPRQPNYNALPNANYPSAGMAGSMNPMGAGGQMHGQPGIPPYGTLPP 856

Query: 502  GRMPSAGMQNRPF 540
            GRM  A M NRP+
Sbjct: 857  GRMSHASMGNRPY 869


>ref|XP_852546.1| PREDICTED: similar to AT-rich interactive domain-containing protein
            1A (ARID domain-containing protein 1A) (SWI/SNF-related,
            matrix-associated, actin-dependent regulator of chromatin
            subfamily F member 1) (SWI-SNF complex protein p270)
            (B120) (SWI-like)... isoform 1 [Canis familiaris].
          Length = 2355

 Score =  117 bits (292), Expect = 4e-26
 Identities = 63/133 (47%), Positives = 79/133 (59%), Gaps = 3/133 (2%)
 Frame = +1

Query: 151  ALSQSPMPQERGFMAGTQRNPQMSQYGAQQTXXXXXXXXXXXXQMHPGISSFQQSNSSGT 330
            +++QS + Q+RG+M   QRNPQM QY + Q             QMH G+ S+QQ NS G+
Sbjct: 741  SMNQSSIAQDRGYM---QRNPQMPQYSSPQPGSALSPRQPSGGQMHTGMGSYQQ-NSMGS 796

Query: 331  YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGMGIN---ANNQMHGQGPSQPCGALPL 501
            YGPQ SQYGPQG Y R P Y+ +P+A+Y   G    +N   A  QMHGQ    P G LP 
Sbjct: 797  YGPQGSQYGPQGGYPRQPNYNALPNANYPSAGMAGSMNPMGAGGQMHGQPGIPPYGTLPP 856

Query: 502  GRMPSAGMQNRPF 540
            GRM  A M NRP+
Sbjct: 857  GRMSHASMGNRPY 869


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,660,526
Number of extensions: 1524956
Number of successful extensions: 5549
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5446
Number of HSP's successfully gapped: 4
Length of query: 493
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 386
Effective length of database: 15,307,552
Effective search space: 5908715072
Effective search space used: 5908715072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009132
         (1479 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003361223.1| PREDICTED: AT-rich interactive domain-contai...   331   6e-91

>ref|XP_003361223.1| PREDICTED: AT-rich interactive domain-containing protein 1B-like
           [Sus scrofa].
          Length = 239

 Score =  331 bits (849), Expect = 6e-91
 Identities = 166/223 (74%), Positives = 166/223 (74%)
 Frame = +1

Query: 151 ALSQSPMPQERGFMAGTQRNPQMSQYGAQQTXXXXXXXXXXXXQMHPGISSFQQSNSSGT 330
           ALSQSPMPQERGFMAGTQRNPQMSQYGAQQT            QMHPGISSFQQSNSSGT
Sbjct: 17  ALSQSPMPQERGFMAGTQRNPQMSQYGAQQTGPSMSPHPSPGGQMHPGISSFQQSNSSGT 76

Query: 331 YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGMGINANNQMHGQGPSQPCGALPLGRM 510
           YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGMGINANNQMHGQGPSQPCGALPLGRM
Sbjct: 77  YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGMGINANNQMHGQGPSQPCGALPLGRM 136

Query: 511 PSAGMQNRPFXXXXXXXXXXXXXXXXXXXXXXXXXXXTVNRKXXXXXXXXXXXXXXXXXS 690
           PSAGMQNRPF                           TVNRK                 S
Sbjct: 137 PSAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQS 196

Query: 691 RYAVGAGGLGVDVCACAEPACVRPASRRVESHTRDFAWPSPLC 819
           RYAVGAGGLGVDVCACAEPACVRPASR VESHTRDFAWPSPLC
Sbjct: 197 RYAVGAGGLGVDVCACAEPACVRPASRGVESHTRDFAWPSPLC 239


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,884,524
Number of extensions: 1079709
Number of successful extensions: 3385
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3360
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 390
Effective length of database: 8,779,541
Effective search space: 3424020990
Effective search space used: 3424020990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009132
         (1479 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001078824.1| AT rich interactive domain 1B (Swi1 like) [M...   238   1e-62
Alignment   gi|NP_001074288.1| AT-rich interactive domain-containing protei...   117   3e-26

>ref|NP_001078824.1| AT rich interactive domain 1B (Swi1 like) [Mus musculus].
          Length = 2244

 Score =  238 bits (606), Expect = 1e-62
 Identities = 112/130 (86%), Positives = 115/130 (88%)
 Frame = +1

Query: 151  ALSQSPMPQERGFMAGTQRNPQMSQYGAQQTXXXXXXXXXXXXQMHPGISSFQQSNSSGT 330
            ALSQSPMPQERGFM GTQRNPQMSQYG QQT            QMHPGIS+FQQSNSSGT
Sbjct: 722  ALSQSPMPQERGFMTGTQRNPQMSQYGPQQTGPSMSPHPSPGGQMHPGISNFQQSNSSGT 781

Query: 331  YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGMGINANNQMHGQGPSQPCGALPLGRM 510
            YGPQMSQYGPQGNYSR PTYSGVPSASYSGPGPGMGINANNQMHGQGP+QPCGA+PLGRM
Sbjct: 782  YGPQMSQYGPQGNYSRTPTYSGVPSASYSGPGPGMGINANNQMHGQGPAQPCGAMPLGRM 841

Query: 511  PSAGMQNRPF 540
            PSAGMQNRPF
Sbjct: 842  PSAGMQNRPF 851


>ref|NP_001074288.1| AT-rich interactive domain-containing protein 1A [Mus musculus].
          Length = 2283

 Score =  117 bits (292), Expect = 3e-26
 Identities = 63/133 (47%), Positives = 79/133 (59%), Gaps = 3/133 (2%)
 Frame = +1

Query: 151  ALSQSPMPQERGFMAGTQRNPQMSQYGAQQTXXXXXXXXXXXXQMHPGISSFQQSNSSGT 330
            +++QS + Q+RG+M   QRNPQM QY + Q             QMH G+ S+QQ NS G+
Sbjct: 741  SMNQSSIAQDRGYM---QRNPQMPQYTSPQPGSALSPRQPSGGQMHSGVGSYQQ-NSMGS 796

Query: 331  YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGMGIN---ANNQMHGQGPSQPCGALPL 501
            YGPQ SQYGPQG Y R P Y+ +P+A+Y   G    +N   A  QMHGQ    P G LP 
Sbjct: 797  YGPQGSQYGPQGGYPRQPNYNALPNANYPNAGMAGSMNPMGAGGQMHGQPGIPPYGTLPP 856

Query: 502  GRMPSAGMQNRPF 540
            GRM  A M NRP+
Sbjct: 857  GRMAHASMGNRPY 869


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,458,841
Number of extensions: 1276639
Number of successful extensions: 4296
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4255
Number of HSP's successfully gapped: 2
Length of query: 493
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 388
Effective length of database: 12,463,779
Effective search space: 4835946252
Effective search space used: 4835946252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009132
         (1479 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_065783.3| AT-rich interactive domain-containing protein 1...   236   4e-62
Alignment   gi|NP_059989.2| AT-rich interactive domain-containing protein 1...   236   4e-62
Alignment   gi|NP_006006.3| AT-rich interactive domain-containing protein 1...   117   3e-26
Alignment   gi|NP_624361.1| AT-rich interactive domain-containing protein 1...   117   3e-26

>ref|NP_065783.3| AT-rich interactive domain-containing protein 1B isoform 2 [Homo
            sapiens].
          Length = 2249

 Score =  236 bits (602), Expect = 4e-62
 Identities = 112/130 (86%), Positives = 115/130 (88%)
 Frame = +1

Query: 151  ALSQSPMPQERGFMAGTQRNPQMSQYGAQQTXXXXXXXXXXXXQMHPGISSFQQSNSSGT 330
            ALSQSPMPQERGFMAGTQRNPQM+QYG QQT            QMH GISSFQQSNSSGT
Sbjct: 780  ALSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGT 839

Query: 331  YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGMGINANNQMHGQGPSQPCGALPLGRM 510
            YGPQMSQYGPQGNYSRPP YSGVPSASYSGPGPGMGI+ANNQMHGQGPSQPCGA+PLGRM
Sbjct: 840  YGPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRM 899

Query: 511  PSAGMQNRPF 540
            PSAGMQNRPF
Sbjct: 900  PSAGMQNRPF 909


>ref|NP_059989.2| AT-rich interactive domain-containing protein 1B isoform 1 [Homo
            sapiens].
          Length = 2236

 Score =  236 bits (602), Expect = 4e-62
 Identities = 112/130 (86%), Positives = 115/130 (88%)
 Frame = +1

Query: 151  ALSQSPMPQERGFMAGTQRNPQMSQYGAQQTXXXXXXXXXXXXQMHPGISSFQQSNSSGT 330
            ALSQSPMPQERGFMAGTQRNPQM+QYG QQT            QMH GISSFQQSNSSGT
Sbjct: 767  ALSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGT 826

Query: 331  YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGMGINANNQMHGQGPSQPCGALPLGRM 510
            YGPQMSQYGPQGNYSRPP YSGVPSASYSGPGPGMGI+ANNQMHGQGPSQPCGA+PLGRM
Sbjct: 827  YGPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRM 886

Query: 511  PSAGMQNRPF 540
            PSAGMQNRPF
Sbjct: 887  PSAGMQNRPF 896


>ref|NP_006006.3| AT-rich interactive domain-containing protein 1A isoform a [Homo
            sapiens].
          Length = 2285

 Score =  117 bits (293), Expect = 3e-26
 Identities = 63/133 (47%), Positives = 79/133 (59%), Gaps = 3/133 (2%)
 Frame = +1

Query: 151  ALSQSPMPQERGFMAGTQRNPQMSQYGAQQTXXXXXXXXXXXXQMHPGISSFQQSNSSGT 330
            +++QS + Q+RG+M   QRNPQM QY + Q             Q+H G+ S+QQ NS G+
Sbjct: 740  SMNQSSIAQDRGYM---QRNPQMPQYSSPQPGSALSPRQPSGGQIHTGMGSYQQ-NSMGS 795

Query: 331  YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGMGIN---ANNQMHGQGPSQPCGALPL 501
            YGPQ  QYGPQG Y R P Y+ +P+A+Y   G   GIN   A  QMHGQ    P G LP 
Sbjct: 796  YGPQGGQYGPQGGYPRQPNYNALPNANYPSAGMAGGINPMGAGGQMHGQPGIPPYGTLPP 855

Query: 502  GRMPSAGMQNRPF 540
            GRM  A M NRP+
Sbjct: 856  GRMSHASMGNRPY 868


>ref|NP_624361.1| AT-rich interactive domain-containing protein 1A isoform b [Homo
            sapiens].
          Length = 2068

 Score =  117 bits (293), Expect = 3e-26
 Identities = 63/133 (47%), Positives = 79/133 (59%), Gaps = 3/133 (2%)
 Frame = +1

Query: 151  ALSQSPMPQERGFMAGTQRNPQMSQYGAQQTXXXXXXXXXXXXQMHPGISSFQQSNSSGT 330
            +++QS + Q+RG+M   QRNPQM QY + Q             Q+H G+ S+QQ NS G+
Sbjct: 740  SMNQSSIAQDRGYM---QRNPQMPQYSSPQPGSALSPRQPSGGQIHTGMGSYQQ-NSMGS 795

Query: 331  YGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGMGIN---ANNQMHGQGPSQPCGALPL 501
            YGPQ  QYGPQG Y R P Y+ +P+A+Y   G   GIN   A  QMHGQ    P G LP 
Sbjct: 796  YGPQGGQYGPQGGYPRQPNYNALPNANYPSAGMAGGINPMGAGGQMHGQPGIPPYGTLPP 855

Query: 502  GRMPSAGMQNRPF 540
            GRM  A M NRP+
Sbjct: 856  GRMSHASMGNRPY 868


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,789,797
Number of extensions: 1509140
Number of successful extensions: 5272
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5209
Number of HSP's successfully gapped: 4
Length of query: 493
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 386
Effective length of database: 14,770,016
Effective search space: 5701226176
Effective search space used: 5701226176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009132
         (1479 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr01                                                        1873   0.0  
gb|GL893785.2| Sus scrofa unplaced genomic scaffold ChrUScaf1670     1205   0.0  

>Sscrofa_Chr01 
||          Length = 315321322

 Score = 1873 bits (945), Expect = 0.0
 Identities = 1012/1043 (97%)
 Strand = Plus / Plus

                                                                            
Query: 363      aggtaactactccagacccccaacgtatagtggggtgcccagtgcaagctacagcggccc 422
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11915525 aggtaactactccagacccccaacgtatagtggggtgcccagtgcaagctacagcggccc 11915584

                                                                            
Query: 423      agggcccggcatgggcatcaatgccaacaaccagatgcatggacaagggccaagccagcc 482
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11915585 agggcccggcatgggcatcaatgccaacaaccagatgcatggacaagggccaagccagcc 11915644

                                                                            
Query: 483      atgtggtgctctgcccctgggacgaatgccatcagctgggatgcagaacaggccatttcc 542
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11915645 atgtggtgctctgcccctgggacgaatgccatcagctgggatgcagaacaggccatttcc 11915704

                                                                            
Query: 543      tggaaatatgagcagcatgacccccagctctcctggcatgtctcagcagggagggccagg 602
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11915705 tggaaatatgagcagcatgacccccagctctcctggcatgtctcagcagggagggccagg 11915764

                                                                            
Query: 603      aatggggccaccaatgccaaccgtgaaccgtaaggcacaggaggcagctgccgcagtgat 662
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11915765 aatggggccaccaatgccaaccgtgaaccgtaaggcacaggaggcagctgccgcagtgat 11915824

                                                                            
Query: 663      gcaggccgctgcaaactcggcccaaagcaggtatgccgtcggggcgggcggtctgggtgt 722
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11915825 gcaggccgctgcaaactcggcccaaagcaggtatgccgtcggggcgggcggtctgggtgt 11915884

                                                                            
Query: 723      ggacgtgtgcgcatgtgcagagcccgcgtgcgtccgccctgcatcacgtcgggtggagag 782
                ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 11915885 ggacgtgtgcgcatgtgcagagcccgcgtgcgtccgccctgcatcacgtggggtggagag 11915944

                                                                            
Query: 783      ccacacgcgtgattttgcttggccgtcgcctttgtgttaaatataggctgtactgtaaag 842
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11915945 ccacacgcgtgattttgcttggccgtcgcctttgtgttaaatataggctgtactgtaaag 11916004

                                                                            
Query: 843      ggcagaaatgtacatcataggctaccttctgtgagacacggaggagggaatctgagtgct 902
                |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 11916005 ggcagaaatgtacatcataggctaccttctgtgagacatggaggagggaatctgagtgct 11916064

                                                                            
Query: 903      gggcaaagtcagacctgggaggtgctcggaagcggctgtgcacagtcaccacaccaaaca 962
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11916065 gggcaaagtcagacctgggaggtgctcggaagcggctgtgcacagtcaccacaccaaaca 11916124

                                                                            
Query: 963      acccagagccagcggcacagggagtgtctgtgtggtgccatccgacacagtgaggtctag 1022
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11916125 acccagagccagcggcacagggagtgtctgtgtggtgccatccgacacagtgaggtctag 11916184

                                                                            
Query: 1023     gcgggaaattctcaagcctaaaaactggctcaaatcttaaaacattcaagaagaacatct 1082
                |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11916185 gcgggaaattctaaagcctaaaaactggctcaaatcttaaaacattcaagaagaacatct 11916244

                                                                            
Query: 1083     ccccnnnnnnncaccccgccataaaaatctttataaaatagaaactctgtatgtgcacnn 1142
                ||||       |||||||||||||||||||||||||| ||||||||||||||||||||  
Sbjct: 11916245 cccctttttttcaccccgccataaaaatctttataaagtagaaactctgtatgtgcacgt 11916304

                                                                            
Query: 1143     nnnnnnnnnnnnnnnnnttgtctaaatgtccatgtctgagagttcttacttcatgttgtg 1202
                                 |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11916305 gtgtgtattgtgtgtgtttgtctaaatgtccatgtctgagagttcttacttcatgttgtg 11916364

                                                                            
Query: 1203     ttgtgtttcatttttctgggcatacctctctgacctaatcaaaaggtggttaatgaagca 1262
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11916365 ttgtgtttcatttttctgggcatacctctctgacctaatcaaaaggtggttaatgaagca 11916424

                                                                            
Query: 1263     aagatcctatttcagaaagtttaaggtgatagagcaaggctttagccttagctgttaact 1322
                |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 11916425 aagatcctatttcagaaagtttaaagtgatagagcaaggctttagccttagctgttaact 11916484

                                                                            
Query: 1323     cgtttttaatcctgaattctaaaaatgaattctcagagtaaattcttgacctgtataaaa 1382
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11916485 cgtttttaatcctgaattctaaaaatgaattctcagagtaaattcttgacctgtataaaa 11916544

                                       
Query: 1383     atgacagaattaaaaatatatga 1405
                |||||||||||||||||||||||
Sbjct: 11916545 atgacagaattaaaaatatatga 11916567



 Score =  480 bits (242), Expect = e-132
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                             
Query: 1160      ttgtctaaatgtccatgtctgagagttcttacttcatgttgtgttgtgtttcatttttct 1219
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116125075 ttgtctaaatgtccatgtctgagagttcttacttcatgttgtgttgtgtttcatttttct 116125134

                                                                             
Query: 1220      gggcatacctctctgacctaatcaaaaggtggttaatgaagcaaagatcctatttcagaa 1279
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116125135 gggcatacctctctgacctaatcaaaaggtggttaatgaagcaaagatcctatttcagaa 116125194

                                                                             
Query: 1280      agtttaaggtgatagagcaaggctttagccttagctgttaactcgtttttaatcctgaat 1339
                 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116125195 agtttaaagtgatagagcaaggctttagccttagctgttaactcgtttttaatcctgaat 116125254

                                                                             
Query: 1340      tctaaaaatgaattctcagagtaaattcttgacctgtataaaaatgacagaattaaaaat 1399
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116125255 tctaaaaatgaattctcagagtaaattcttgacctgtataaaaatgacagaattaaaaat 116125314

                       
Query: 1400      atatga 1405
                 ||||||
Sbjct: 116125315 atatga 116125320



 Score =  184 bits (93), Expect = 9e-44
 Identities = 93/93 (100%)
 Strand = Plus / Plus

                                                                             
Query: 3         actcgggctgcctggcctgatggggatgccgtcctgaaaacaccaggccctgcactgtga 62
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116150875 actcgggctgcctggcctgatggggatgccgtcctgaaaacaccaggccctgcactgtga 116150934

                                                  
Query: 63        ccctcaccgggctgaagtggtggtaatttttag 95
                 |||||||||||||||||||||||||||||||||
Sbjct: 116150935 ccctcaccgggctgaagtggtggtaatttttag 116150967


>gb|GL893785.2| Sus scrofa unplaced genomic scaffold ChrUScaf1670
          Length = 92163

 Score = 1205 bits (608), Expect = 0.0
 Identities = 614/616 (99%)
 Strand = Plus / Minus

                                                                         
Query: 363   aggtaactactccagacccccaacgtatagtggggtgcccagtgcaagctacagcggccc 422
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13133 aggtaactactccagacccccaacgtatagtggggtgcccagtgcaagctacagcggccc 13074

                                                                         
Query: 423   agggcccggcatgggcatcaatgccaacaaccagatgcatggacaagggccaagccagcc 482
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13073 agggcccggcatgggcatcaatgccaacaaccagatgcatggacaagggccaagccagcc 13014

                                                                         
Query: 483   atgtggtgctctgcccctgggacgaatgccatcagctgggatgcagaacaggccatttcc 542
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13013 atgtggtgctctgcccctgggacgaatgccatcagctgggatgcagaacaggccatttcc 12954

                                                                         
Query: 543   tggaaatatgagcagcatgacccccagctctcctggcatgtctcagcagggagggccagg 602
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12953 tggaaatatgagcagcatgacccccagctctcctggcatgtctcagcagggagggccagg 12894

                                                                         
Query: 603   aatggggccaccaatgccaaccgtgaaccgtaaggcacaggaggcagctgccgcagtgat 662
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12893 aatggggccaccaatgccaaccgtgaaccgtaaggcacaggaggcagctgccgcagtgat 12834

                                                                         
Query: 663   gcaggccgctgcaaactcggcccaaagcaggtatgccgtcggggcgggcggtctgggtgt 722
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12833 gcaggccgctgcaaactcggcccaaagcaggtatgccgtcggggcgggcggtctgggtgt 12774

                                                                         
Query: 723   ggacgtgtgcgcatgtgcagagcccgcgtgcgtccgccctgcatcacgtcgggtggagag 782
             ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 12773 ggacgtgtgcgcatgtgcagagcccgcgtgcgtccgccctgcatcacgtggggtggagag 12714

                                                                         
Query: 783   ccacacgcgtgattttgcttggccgtcgcctttgtgttaaatataggctgtactgtaaag 842
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12713 ccacacgcgtgattttgcttggccgtcgcctttgtgttaaatataggctgtactgtaaag 12654

                                                                         
Query: 843   ggcagaaatgtacatcataggctaccttctgtgagacacggaggagggaatctgagtgct 902
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 12653 ggcagaaatgtacatcataggctaccttctgtgagacatggaggagggaatctgagtgct 12594

                                                                         
Query: 903   gggcaaagtcagacctgggaggtgctcggaagcggctgtgcacagtcaccacaccaaaca 962
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12593 gggcaaagtcagacctgggaggtgctcggaagcggctgtgcacagtcaccacaccaaaca 12534

                             
Query: 963   acccagagccagcggc 978
             ||||||||||||||||
Sbjct: 12533 acccagagccagcggc 12518



 Score =  615 bits (310), Expect = e-173
 Identities = 371/400 (92%)
 Strand = Plus / Minus

                                                                         
Query: 1006  gacacagtgaggtctaggcgggaaattctcaagcctaaaaactggctcaaatcttaaaac 1065
             ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 12417 gacacagtgaggtctaggcgggaaattctaaagcctaaaaactggctcaaatcttaaaac 12358

                                                                         
Query: 1066  attcaagaagaacatctccccnnnnnnncaccccgccataaaaatctttataaaatagaa 1125
             |||||||||||||||||||||       |||||||||||||||||||||||||| |||||
Sbjct: 12357 attcaagaagaacatctcccctttttttcaccccgccataaaaatctttataaagtagaa 12298

                                                                         
Query: 1126  actctgtatgtgcacnnnnnnnnnnnnnnnnnnnttgtctaaatgtccatgtctgagagt 1185
             |||||||||||||||                   ||||||||||||||||||||||||||
Sbjct: 12297 actctgtatgtgcacgtgtgtgtattgtgtgtgtttgtctaaatgtccatgtctgagagt 12238

                                                                         
Query: 1186  tcttacttcatgttgtgttgtgtttcatttttctgggcatacctctctgacctaatcaaa 1245
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12237 tcttacttcatgttgtgttgtgtttcatttttctgggcatacctctctgacctaatcaaa 12178

                                                                         
Query: 1246  aggtggttaatgaagcaaagatcctatttcagaaagtttaaggtgatagagcaaggcttt 1305
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 12177 aggtggttaatgaagcaaagatcctatttcagaaagtttaaagtgatagagcaaggcttt 12118

                                                                         
Query: 1306  agccttagctgttaactcgtttttaatcctgaattctaaaaatgaattctcagagtaaat 1365
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12117 agccttagctgttaactcgtttttaatcctgaattctaaaaatgaattctcagagtaaat 12058

                                                     
Query: 1366  tcttgacctgtataaaaatgacagaattaaaaatatatga 1405
             ||||||||||||||||||||||||||||||||||||||||
Sbjct: 12057 tcttgacctgtataaaaatgacagaattaaaaatatatga 12018



 Score =  369 bits (186), Expect = 3e-99
 Identities = 186/186 (100%)
 Strand = Plus / Minus

                                                                         
Query: 183   aggttttatggcaggcacacaaagaaaccctcagatgtctcagtatggagctcagcagac 242
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27629 aggttttatggcaggcacacaaagaaaccctcagatgtctcagtatggagctcagcagac 27570

                                                                         
Query: 243   aggaccatccatgtcgcctcatccttctcctggaggccagatgcatcccggaatcagtag 302
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27569 aggaccatccatgtcgcctcatccttctcctggaggccagatgcatcccggaatcagtag 27510

                                                                         
Query: 303   ctttcagcagagtaactcaagtgggacttacggtccacagatgagccagtatggaccaca 362
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27509 ctttcagcagagtaactcaagtgggacttacggtccacagatgagccagtatggaccaca 27450

                   
Query: 363   aggtaa 368
             ||||||
Sbjct: 27449 aggtaa 27444



 Score =  184 bits (93), Expect = 9e-44
 Identities = 93/93 (100%)
 Strand = Plus / Minus

                                                                         
Query: 95    gcagtcagatgcctcctcagccacctgggagccagtcagaatccagttcccatcctgcct 154
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46942 gcagtcagatgcctcctcagccacctgggagccagtcagaatccagttcccatcctgcct 46883

                                              
Query: 155   tgagccagtccccaatgccgcaggaaagaggtt 187
             |||||||||||||||||||||||||||||||||
Sbjct: 46882 tgagccagtccccaatgccgcaggaaagaggtt 46850



 Score =  184 bits (93), Expect = 9e-44
 Identities = 93/93 (100%)
 Strand = Plus / Minus

                                                                         
Query: 3     actcgggctgcctggcctgatggggatgccgtcctgaaaacaccaggccctgcactgtga 62
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48809 actcgggctgcctggcctgatggggatgccgtcctgaaaacaccaggccctgcactgtga 48750

                                              
Query: 63    ccctcaccgggctgaagtggtggtaatttttag 95
             |||||||||||||||||||||||||||||||||
Sbjct: 48749 ccctcaccgggctgaagtggtggtaatttttag 48717


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,289,637
Number of extensions: 361
Number of successful extensions: 361
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 10
Length of query: 1479
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1458
Effective length of database: 2,808,413,156
Effective search space: 4094666381448
Effective search space used: 4094666381448
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)