Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009138
(541 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029539.1| protein S100-A2 [Bos taurus]. 191 2e-49
Alignment gi|NP_777020.1| protein S100-A4 [Bos taurus]. 133 1e-31
Alignment gi|NP_001179144.1| protein S100-A5 [Bos taurus]. 102 3e-22
Alignment gi|XP_002686047.1| PREDICTED: S100 calcium binding protein A5-l... 102 3e-22
Alignment gi|NP_001092512.1| S100 calcium binding protein A1 [Bos taurus]. 100 6e-22
Alignment gi|XP_001253745.1| PREDICTED: S100 calcium binding protein A1 i... 100 6e-22
Alignment gi|NP_001179595.1| protein S100-Z [Bos taurus]. 99 2e-21
Alignment gi|XP_002690462.1| PREDICTED: S100 calcium binding protein, zet... 99 2e-21
Alignment gi|NP_001029727.1| protein S100-B [Bos taurus]. 91 4e-19
Alignment gi|XP_002686067.1| PREDICTED: S100 calcium-binding protein A6-l... 83 1e-16
>ref|NP_001029539.1| protein S100-A2 [Bos taurus].
Length = 97
Score = 191 bits (486), Expect = 2e-49
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG
Sbjct: 1 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPQR 338
DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSP R
Sbjct: 61 DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPAR 96
>ref|NP_777020.1| protein S100-A4 [Bos taurus].
Length = 101
Score = 133 bits (334), Expect = 1e-31
Identities = 61/96 (63%), Positives = 79/96 (82%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M+ PLE+AL VMV+TFHKYSG+EGDKFKL+K E+KELL +ELPSF+G++ DE +KLM
Sbjct: 1 MAYPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDETAFQKLMS 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPQR 338
+LD N D +VDFQEY VFL+ I +MCN+FF+G P +
Sbjct: 61 NLDCNKDNEVDFQEYCVFLSCIAMMCNEFFEGFPDK 96
>ref|NP_001179144.1| protein S100-A5 [Bos taurus].
Length = 93
Score = 102 bits (253), Expect = 3e-22
Identities = 50/90 (55%), Positives = 66/90 (73%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M +PLE+AL MV TFHKYSG+EG K LS+ E+KEL+ KEL +GEK+ E + LM
Sbjct: 1 METPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKEL--CLGEKMRESSIDDLMK 58
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFF 320
LD+NSDQ++DF+EY+VFL + + NDFF
Sbjct: 59 SLDKNSDQEIDFKEYSVFLTTLCMAYNDFF 88
>ref|XP_002686047.1| PREDICTED: S100 calcium binding protein A5-like [Bos taurus].
Length = 93
Score = 102 bits (253), Expect = 3e-22
Identities = 50/90 (55%), Positives = 66/90 (73%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M +PLE+AL MV TFHKYSG+EG K LS+ E+KEL+ KEL +GEK+ E + LM
Sbjct: 1 METPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKEL--CLGEKMRESSIDDLMK 58
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFF 320
LD+NSDQ++DF+EY+VFL + + NDFF
Sbjct: 59 SLDKNSDQEIDFKEYSVFLTTLCMAYNDFF 88
>ref|NP_001092512.1| S100 calcium binding protein A1 [Bos taurus].
Length = 94
Score = 100 bits (250), Expect = 6e-22
Identities = 46/90 (51%), Positives = 64/90 (71%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M S LE A+ ++ FH +SG+EGDK+KLSK E+KELL EL F+ + D + + K+M
Sbjct: 1 MGSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMK 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFF 320
+LDEN D +VDFQEY V +A +T+ CN+FF
Sbjct: 61 ELDENGDGEVDFQEYVVLVAALTVACNNFF 90
>ref|XP_001253745.1| PREDICTED: S100 calcium binding protein A1 isoform 2 [Bos taurus].
Length = 94
Score = 100 bits (250), Expect = 6e-22
Identities = 46/90 (51%), Positives = 64/90 (71%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M S LE A+ ++ FH +SG+EGDK+KLSK E+KELL EL F+ + D + + K+M
Sbjct: 1 MGSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMK 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFF 320
+LDEN D +VDFQEY V +A +T+ CN+FF
Sbjct: 61 ELDENGDGEVDFQEYVVLVAALTVACNNFF 90
>ref|NP_001179595.1| protein S100-Z [Bos taurus].
Length = 99
Score = 99.4 bits (246), Expect = 2e-21
Identities = 45/90 (50%), Positives = 65/90 (72%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M + LE A+ +M+ TFH+YS +EGD+FKL+KGE+K LL +EL F+ + D E + K+M
Sbjct: 1 MPTQLEIAMNIMIRTFHRYSCREGDRFKLNKGELKMLLQRELTEFLSCQKDPELVDKIMQ 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFF 320
DLD N D +VDF E+ V +A +T+ CND+F
Sbjct: 61 DLDANKDNEVDFNEFVVMVAALTVACNDYF 90
>ref|XP_002690462.1| PREDICTED: S100 calcium binding protein, zeta-like [Bos taurus].
Length = 99
Score = 99.4 bits (246), Expect = 2e-21
Identities = 45/90 (50%), Positives = 65/90 (72%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M + LE A+ +M+ TFH+YS +EGD+FKL+KGE+K LL +EL F+ + D E + K+M
Sbjct: 1 MPTQLEIAMNIMIRTFHRYSCREGDRFKLNKGELKMLLQRELTEFLSCQKDPELVDKIMQ 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFF 320
DLD N D +VDF E+ V +A +T+ CND+F
Sbjct: 61 DLDANKDNEVDFNEFVVMVAALTVACNDYF 90
>ref|NP_001029727.1| protein S100-B [Bos taurus].
Length = 92
Score = 91.3 bits (225), Expect = 4e-19
Identities = 41/89 (46%), Positives = 63/89 (70%)
Frame = +3
Query: 57 SPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGDL 236
S LE+A+ ++ FH+YSG+EGDK KL K E+KEL++ EL F+ E ++E + K+M L
Sbjct: 2 SELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETL 61
Query: 237 DENSDQQVDFQEYAVFLALITIMCNDFFQ 323
D + D + DFQE+ F+A+IT C++FF+
Sbjct: 62 DSDGDGECDFQEFMAFVAMITTACHEFFE 90
>ref|XP_002686067.1| PREDICTED: S100 calcium-binding protein A6-like [Bos taurus].
Length = 142
Score = 83.2 bits (204), Expect = 1e-16
Identities = 42/88 (47%), Positives = 61/88 (69%)
Frame = +3
Query: 60 PLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGDLD 239
PL+QA++++VA HKYSG EG K SK E+KEL+ KEL +GEK+ + + +LM +LD
Sbjct: 56 PLDQAISLLVAICHKYSGCEGVKNTRSKKELKELVQKELT--LGEKMQDAEIAELMDELD 113
Query: 240 ENSDQQVDFQEYAVFLALITIMCNDFFQ 323
+N DQ V+FQEY FL + ++ N+ Q
Sbjct: 114 QNKDQVVNFQEYVTFLGALAMIYNELLQ 141
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 20,141,758
Number of extensions: 680904
Number of successful extensions: 3404
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 3357
Number of HSP's successfully gapped: 35
Length of query: 180
Length of database: 17,681,374
Length adjustment: 96
Effective length of query: 84
Effective length of database: 14,504,926
Effective search space: 1218413784
Effective search space used: 1218413784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009138
(541 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855158.1| PREDICTED: similar to S100 calcium-binding prot... 179 2e-45
Alignment gi|NP_001003161.1| protein S100-A4 [Canis lupus familiaris]. 132 1e-31
Alignment gi|XP_537267.2| PREDICTED: similar to S100 calcium-binding prot... 104 5e-23
Alignment gi|XP_537265.1| PREDICTED: similar to S-100 protein, alpha chai... 99 2e-21
Alignment gi|XP_852663.1| PREDICTED: similar to S-100 protein, alpha chai... 99 2e-21
Alignment gi|XP_537268.2| PREDICTED: similar to Calcyclin (Prolactin rece... 99 3e-21
Alignment gi|XP_852856.1| PREDICTED: similar to S-100P protein [Canis fam... 89 2e-18
Alignment gi|XP_547582.1| PREDICTED: similar to S100 calcium binding prot... 89 3e-18
Alignment gi|XP_533060.2| PREDICTED: similar to S100 calcium-binding prot... 74 8e-14
Alignment gi|XP_548737.2| PREDICTED: similar to S-100 calcium-binding pro... 71 5e-13
>ref|XP_855158.1| PREDICTED: similar to S100 calcium-binding protein A2 (S-100L
protein) (CAN19) [Canis familiaris].
Length = 97
Score = 179 bits (453), Expect = 2e-45
Identities = 88/97 (90%), Positives = 91/97 (93%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
MSSPLEQALAVMV+TFHKYSGQEGDKFKLSK EMK LL ELPSFVGEKVDEEGLKKLMG
Sbjct: 1 MSSPLEQALAVMVSTFHKYSGQEGDKFKLSKAEMKTLLQNELPSFVGEKVDEEGLKKLMG 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPQRP 341
+LDENSDQQVDFQEYAVFLAL+TIMCNDFFQ SP RP
Sbjct: 61 NLDENSDQQVDFQEYAVFLALVTIMCNDFFQDSPDRP 97
>ref|NP_001003161.1| protein S100-A4 [Canis lupus familiaris].
Length = 101
Score = 132 bits (333), Expect = 1e-31
Identities = 59/96 (61%), Positives = 79/96 (82%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M+ PLE+AL VMV+TFHKYSG+EGDKFKL++ E+KELL +ELPSF+G++ DE +KLM
Sbjct: 1 MTFPLEKALDVMVSTFHKYSGKEGDKFKLNRSELKELLMRELPSFLGKRTDEAAFQKLMS 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPQR 338
+LD N D +VDFQEY VFL+ + +MCN+FF+G P +
Sbjct: 61 NLDSNRDNEVDFQEYCVFLSCVAMMCNEFFEGFPDK 96
>ref|XP_537267.2| PREDICTED: similar to S100 calcium-binding protein A5 (S-100D
protein) [Canis familiaris].
Length = 93
Score = 104 bits (259), Expect = 5e-23
Identities = 51/90 (56%), Positives = 67/90 (74%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M +PLE+AL MV+TFHKYSG+EG K LS+ E+KEL+ KEL +GEK+ E G+ LM
Sbjct: 1 METPLEKALTTMVSTFHKYSGREGSKLTLSRKELKELIKKEL--CLGEKMKESGIDDLMR 58
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFF 320
LD+NSDQ++DF+EY VFL + + NDFF
Sbjct: 59 TLDKNSDQEIDFKEYTVFLTTLCMAYNDFF 88
>ref|XP_537265.1| PREDICTED: similar to S-100 protein, alpha chain (S100
calcium-binding protein A1) isoform 1 [Canis
familiaris].
Length = 94
Score = 99.0 bits (245), Expect = 2e-21
Identities = 45/90 (50%), Positives = 64/90 (71%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M S LE A+ ++ FH +SG+EG+K+KLSK E+KELL EL F+ + D + + K+M
Sbjct: 1 MGSELETAMETLINVFHAHSGKEGNKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMK 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFF 320
+LDEN D +VDFQEY V +A +T+ CN+FF
Sbjct: 61 ELDENGDGEVDFQEYVVLVAALTVACNNFF 90
>ref|XP_852663.1| PREDICTED: similar to S-100 protein, alpha chain (S100
calcium-binding protein A1) isoform 2 [Canis
familiaris].
Length = 94
Score = 99.0 bits (245), Expect = 2e-21
Identities = 45/90 (50%), Positives = 64/90 (71%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M S LE A+ ++ FH +SG+EG+K+KLSK E+KELL EL F+ + D + + K+M
Sbjct: 1 MGSELETAMETLINVFHAHSGKEGNKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMK 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFF 320
+LDEN D +VDFQEY V +A +T+ CN+FF
Sbjct: 61 ELDENGDGEVDFQEYVVLVAALTVACNNFF 90
>ref|XP_537268.2| PREDICTED: similar to Calcyclin (Prolactin receptor associated
protein) (PRA) (Growth factor-inducible protein 2A9)
(S100 calcium-binding protein A6) (MLN 4) [Canis
familiaris].
Length = 90
Score = 98.6 bits (244), Expect = 3e-21
Identities = 48/92 (52%), Positives = 65/92 (70%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M+ PL+QA+ ++VA FHKYSG+EGDK LSK E+KEL+ KEL +G K+ + + KLM
Sbjct: 1 MACPLDQAIGLLVAIFHKYSGKEGDKNTLSKKELKELIQKELT--IGPKLQDADIAKLMD 58
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFFQG 326
DLD N DQ V+FQEY FL + ++ ND +G
Sbjct: 59 DLDRNKDQVVNFQEYVTFLGALALIYNDALKG 90
>ref|XP_852856.1| PREDICTED: similar to S-100P protein [Canis familiaris].
Length = 197
Score = 89.4 bits (220), Expect = 2e-18
Identities = 40/93 (43%), Positives = 62/93 (66%)
Frame = +3
Query: 45 SKMSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKL 224
S + LE A+ ++++ F +Y+G EG K L+KGE+K L+ KELP F+ K D + + KL
Sbjct: 100 SSTMTELETAMGMIISVFARYAGVEGSKQSLTKGELKVLMEKELPGFLQTKRDRDSVDKL 159
Query: 225 MGDLDENSDQQVDFQEYAVFLALITIMCNDFFQ 323
+ DLD N D +VDF E+ VF+A +T C+ +F+
Sbjct: 160 LKDLDANGDAEVDFSEFIVFVATLTAACHQYFE 192
>ref|XP_547582.1| PREDICTED: similar to S100 calcium binding protein A3 [Canis
familiaris].
Length = 101
Score = 88.6 bits (218), Expect = 3e-18
Identities = 45/97 (46%), Positives = 62/97 (63%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M+ PLEQA+A +V TF +YSG+ GDK KL + E+KELL KELP++ ++ E K M
Sbjct: 1 MARPLEQAVAAIVCTFQEYSGRCGDKHKLCQAELKELLQKELPTWTPTELRECDYNKFMS 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPQRP 341
LD N D +VDF EY LA + C+++F+G P
Sbjct: 61 VLDANQDCEVDFVEYMRSLACLCTYCHEYFKGCAPDP 97
>ref|XP_533060.2| PREDICTED: similar to S100 calcium-binding protein A10 [Canis
familiaris].
Length = 116
Score = 73.9 bits (180), Expect = 8e-14
Identities = 37/92 (40%), Positives = 58/92 (63%)
Frame = +3
Query: 45 SKMSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKL 224
+KM S +E A+ M+ TFHK++G DK L+K +++ L+ KE P F+ + D + K+
Sbjct: 18 TKMPSQMEHAMETMMFTFHKFAG---DKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKI 74
Query: 225 MGDLDENSDQQVDFQEYAVFLALITIMCNDFF 320
M DLD+ D +V FQ + +A +TI CND+F
Sbjct: 75 MKDLDQCRDGKVGFQSFFSLIAGLTIACNDYF 106
>ref|XP_548737.2| PREDICTED: similar to S-100 calcium-binding protein beta subunit
(S-100 protein, beta chain) [Canis familiaris].
Length = 456
Score = 71.2 bits (173), Expect = 5e-13
Identities = 33/89 (37%), Positives = 56/89 (62%)
Frame = +3
Query: 57 SPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGDL 236
S LE+A ++ F +YS + G +L K ++KEL+ EL F+ E ++E + K+M L
Sbjct: 366 SQLEKAALALLDVFQQYSARAGGGRRLRKADVKELIGSELAHFLEEIKEQEVVDKVMETL 425
Query: 237 DENSDQQVDFQEYAVFLALITIMCNDFFQ 323
D + D + DFQE+ F+A++T C++FF+
Sbjct: 426 DSDGDGECDFQEFVAFVAMVTTACHEFFE 454
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 20,487,621
Number of extensions: 605777
Number of successful extensions: 3386
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 3357
Number of HSP's successfully gapped: 20
Length of query: 180
Length of database: 18,874,504
Length adjustment: 96
Effective length of query: 84
Effective length of database: 15,674,248
Effective search space: 1316636832
Effective search space used: 1316636832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009138
(541 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360610.1| PREDICTED: protein S100-A2-like [Sus scrofa]. 196 5e-51
Alignment gi|XP_001929591.1| PREDICTED: protein S100-A2-like isoform 1 [S... 196 5e-51
Alignment gi|XP_001929598.1| PREDICTED: protein S100-A4-like isoform 2 [S... 134 3e-32
Alignment gi|XP_001929595.1| PREDICTED: protein S100-A4-like isoform 1 [S... 134 3e-32
Alignment gi|XP_003355203.1| PREDICTED: protein S100-A4-like [Sus scrofa]. 122 2e-28
Alignment gi|NP_001038022.1| protein S100-A6 [Sus scrofa]. 100 5e-22
Alignment gi|XP_003355204.1| PREDICTED: protein S100-A5-like [Sus scrofa]. 96 2e-20
Alignment gi|XP_003123762.1| PREDICTED: protein S100-Z-like [Sus scrofa]. 96 2e-20
Alignment gi|XP_003362027.1| PREDICTED: protein S100-B-like [Sus scrofa]. 91 4e-19
Alignment gi|XP_001927371.2| PREDICTED: protein S100-A3-like [Sus scrofa]. 89 1e-18
>ref|XP_003360610.1| PREDICTED: protein S100-A2-like [Sus scrofa].
Length = 97
Score = 196 bits (499), Expect = 5e-51
Identities = 97/97 (100%), Positives = 97/97 (100%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG
Sbjct: 1 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPQRP 341
DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPQRP
Sbjct: 61 DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPQRP 97
>ref|XP_001929591.1| PREDICTED: protein S100-A2-like isoform 1 [Sus scrofa].
Length = 97
Score = 196 bits (499), Expect = 5e-51
Identities = 97/97 (100%), Positives = 97/97 (100%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG
Sbjct: 1 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPQRP 341
DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPQRP
Sbjct: 61 DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPQRP 97
>ref|XP_001929598.1| PREDICTED: protein S100-A4-like isoform 2 [Sus scrofa].
Length = 101
Score = 134 bits (337), Expect = 3e-32
Identities = 61/96 (63%), Positives = 79/96 (82%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M+ PLE+AL VMV+TFHKYSG+EGDKFKL+K E+KELL +ELPSF+G++ DE +KLM
Sbjct: 1 MAYPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPQR 338
+LD N D +VDFQEY VFL+ I +MCN+FF+G P +
Sbjct: 61 NLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGFPDK 96
>ref|XP_001929595.1| PREDICTED: protein S100-A4-like isoform 1 [Sus scrofa].
Length = 101
Score = 134 bits (337), Expect = 3e-32
Identities = 61/96 (63%), Positives = 79/96 (82%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M+ PLE+AL VMV+TFHKYSG+EGDKFKL+K E+KELL +ELPSF+G++ DE +KLM
Sbjct: 1 MAYPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPQR 338
+LD N D +VDFQEY VFL+ I +MCN+FF+G P +
Sbjct: 61 NLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGFPDK 96
>ref|XP_003355203.1| PREDICTED: protein S100-A4-like [Sus scrofa].
Length = 94
Score = 122 bits (305), Expect = 2e-28
Identities = 56/90 (62%), Positives = 74/90 (82%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M+ PLE+AL VMV+TFHKYSG+EGDKFKL+K E+KELL +ELPSF+G + D + + K+M
Sbjct: 1 MAYPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGAQKDADAVDKVMK 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFF 320
+LDEN D +VDFQEY V +A +T+ CN+FF
Sbjct: 61 ELDENGDGEVDFQEYVVLVAALTVACNNFF 90
>ref|NP_001038022.1| protein S100-A6 [Sus scrofa].
Length = 90
Score = 100 bits (249), Expect = 5e-22
Identities = 49/92 (53%), Positives = 65/92 (70%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M+ PL+QA+ ++VA FHKYSGQEGDK LSK E+KEL+ KEL +G K+ + + KLM
Sbjct: 1 MACPLDQAIGLLVAIFHKYSGQEGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 58
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFFQG 326
DLD N DQ V+FQEY FL + ++ ND +G
Sbjct: 59 DLDRNKDQVVNFQEYVTFLGALAMIYNDVLRG 90
>ref|XP_003355204.1| PREDICTED: protein S100-A5-like [Sus scrofa].
Length = 92
Score = 95.5 bits (236), Expect = 2e-20
Identities = 49/90 (54%), Positives = 65/90 (72%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M +PLE+AL MV TFHKYSG+EG K LS+ E+KEL+ KEL +GE + E + LM
Sbjct: 1 METPLEKALTTMVTTFHKYSGREGSKLTLSRRELKELIKKEL--CLGE-MKESSVDDLMK 57
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFF 320
LD+NSDQ++DF+EY+VFL + + NDFF
Sbjct: 58 SLDKNSDQEIDFKEYSVFLTTLCMAYNDFF 87
>ref|XP_003123762.1| PREDICTED: protein S100-Z-like [Sus scrofa].
Length = 99
Score = 95.5 bits (236), Expect = 2e-20
Identities = 44/90 (48%), Positives = 64/90 (71%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M + LE A+ +M+ TF +YS +EGD+FKL+KGE+K LL +EL F+ + D E + K+M
Sbjct: 1 MPTQLEIAMDIMIRTFPRYSCKEGDRFKLNKGELKMLLQRELTDFLSCQKDPELVDKIMQ 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFF 320
DLD N D +VDF E+ V +A +T+ CND+F
Sbjct: 61 DLDANKDNEVDFNEFVVMVAALTVACNDYF 90
>ref|XP_003362027.1| PREDICTED: protein S100-B-like [Sus scrofa].
Length = 92
Score = 90.9 bits (224), Expect = 4e-19
Identities = 40/89 (44%), Positives = 63/89 (70%)
Frame = +3
Query: 57 SPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGDL 236
S LE+A+ ++ FH+YSG+EGDK KL K E+KEL++ EL F+ E ++E + K+M L
Sbjct: 2 SELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINSELSHFLEEIKEQEVVDKVMETL 61
Query: 237 DENSDQQVDFQEYAVFLALITIMCNDFFQ 323
D + D + DFQE+ F+A++T C++FF+
Sbjct: 62 DSDGDGECDFQEFMAFVAMVTTACHEFFE 90
>ref|XP_001927371.2| PREDICTED: protein S100-A3-like [Sus scrofa].
Length = 101
Score = 89.4 bits (220), Expect = 1e-18
Identities = 44/97 (45%), Positives = 62/97 (63%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M+SPLEQ LA ++ TF +YSG+ GDK KL + E+KELL KELP++ ++ E K M
Sbjct: 1 MASPLEQGLAAVLCTFQEYSGRCGDKHKLCQAELKELLQKELPTWTPTELRECDYNKFMS 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPQRP 341
LD + D +VDF EY LA + C+++F+ P P
Sbjct: 61 VLDSDKDGEVDFVEYVRSLACLCTYCHEYFKDCPPEP 97
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 13,825,534
Number of extensions: 574642
Number of successful extensions: 2147
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 2119
Number of HSP's successfully gapped: 28
Length of query: 180
Length of database: 11,343,932
Length adjustment: 93
Effective length of query: 87
Effective length of database: 9,028,511
Effective search space: 785480457
Effective search space used: 785480457
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009138
(541 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035441.1| protein S100-A4 [Mus musculus]. 132 2e-31
Alignment gi|NP_035442.1| protein S100-A5 [Mus musculus]. 99 2e-21
Alignment gi|NP_035439.1| protein S100-A1 [Mus musculus]. 98 3e-21
Alignment gi|NP_035443.1| protein S100-A6 [Mus musculus]. 96 1e-20
Alignment gi|NP_001182689.1| predicted gene, EG628324 [Mus musculus]. 96 1e-20
Alignment gi|NP_001074628.1| protein S100-Z [Mus musculus]. 95 3e-20
Alignment gi|NP_033141.1| protein S100-B [Mus musculus]. 93 1e-19
Alignment gi|NP_035440.1| protein S100-A3 [Mus musculus]. 90 1e-18
Alignment gi|NP_033138.1| protein S100-A10 [Mus musculus]. 70 9e-13
Alignment gi|XP_003084639.1| PREDICTED: protein S100-A11-like [Mus muscul... 67 1e-11
>ref|NP_035441.1| protein S100-A4 [Mus musculus].
Length = 101
Score = 132 bits (331), Expect = 2e-31
Identities = 59/96 (61%), Positives = 79/96 (82%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M+ PLE+AL V+V+TFHKYSG+EGDKFKL+K E+KELL +ELPSF+G++ DE +K+M
Sbjct: 1 MARPLEEALDVIVSTFHKYSGKEGDKFKLNKTELKELLTRELPSFLGKRTDEAAFQKVMS 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPQR 338
+LD N D +VDFQEY VFL+ I +MCN+FF+G P +
Sbjct: 61 NLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGCPDK 96
>ref|NP_035442.1| protein S100-A5 [Mus musculus].
Length = 93
Score = 98.6 bits (244), Expect = 2e-21
Identities = 48/90 (53%), Positives = 64/90 (71%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M +PLE+AL MV TFHKYSG+EG K LS+ E+KEL+ EL + EK+ E + LM
Sbjct: 1 METPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKTELS--LAEKMKESSIDNLMK 58
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFF 320
LD+NSDQ++DF+EY+VFL + + NDFF
Sbjct: 59 SLDKNSDQEIDFKEYSVFLTTLCMAYNDFF 88
>ref|NP_035439.1| protein S100-A1 [Mus musculus].
Length = 94
Score = 98.2 bits (243), Expect = 3e-21
Identities = 44/90 (48%), Positives = 64/90 (71%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M S LE A+ ++ FH +SG+EGDK+KLSK E+K+LL EL F+ + D + + K+M
Sbjct: 1 MGSELESAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSGFLDVQKDADAVDKVMK 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFF 320
+LDEN D +VDF+EY V +A +T+ CN+FF
Sbjct: 61 ELDENGDGEVDFKEYVVLVAALTVACNNFF 90
>ref|NP_035443.1| protein S100-A6 [Mus musculus].
Length = 89
Score = 96.3 bits (238), Expect = 1e-20
Identities = 45/88 (51%), Positives = 64/88 (72%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M+ PL+QA+ ++VA FHKYSG+EGDK LSK E+KEL+ KEL +G K+ + + +LM
Sbjct: 1 MACPLDQAIGLLVAIFHKYSGKEGDKHTLSKKELKELIQKELT--IGSKLQDAEIARLMD 58
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCND 314
DLD N DQ+V+FQEY FL + ++ N+
Sbjct: 59 DLDRNKDQEVNFQEYVAFLGALALIYNE 86
>ref|NP_001182689.1| predicted gene, EG628324 [Mus musculus].
Length = 104
Score = 96.3 bits (238), Expect = 1e-20
Identities = 47/83 (56%), Positives = 63/83 (75%)
Frame = +3
Query: 84 MVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGDLDENSDQQVD 263
MV TFHKY+ QE ++ K +KGE+KELL KEL S+VG+ VD+E +KK M +LD++SDQQVD
Sbjct: 1 MVYTFHKYASQEDERLKHNKGEIKELLRKELLSYVGDNVDDEKVKKEMNNLDKDSDQQVD 60
Query: 264 FQEYAVFLALITIMCNDFFQGSP 332
F+ YA+ L I N+F +GSP
Sbjct: 61 FRMYALVLVDSAIWFNNFLEGSP 83
>ref|NP_001074628.1| protein S100-Z [Mus musculus].
Length = 99
Score = 95.1 bits (235), Expect = 3e-20
Identities = 43/90 (47%), Positives = 63/90 (70%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M + LE A+ M+ FH+YS +EGD+FKL+KGE+K LL +EL F+ + D + + K+M
Sbjct: 1 MPTQLEMAMDTMIRIFHRYSCKEGDRFKLNKGELKMLLQRELTEFLTCQKDPQLVDKIMQ 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFF 320
DLD N D +VDF E+ V +A +T+ CND+F
Sbjct: 61 DLDANKDNEVDFNEFVVMVAALTVACNDYF 90
>ref|NP_033141.1| protein S100-B [Mus musculus].
Length = 92
Score = 93.2 bits (230), Expect = 1e-19
Identities = 41/89 (46%), Positives = 64/89 (71%)
Frame = +3
Query: 57 SPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGDL 236
S LE+A+ ++ FH+YSG+EGDK KL K E+KEL++ EL F+ E ++E + K+M L
Sbjct: 2 SELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETL 61
Query: 237 DENSDQQVDFQEYAVFLALITIMCNDFFQ 323
DE+ D + DFQE+ F+A++T C++FF+
Sbjct: 62 DEDGDGECDFQEFMAFVAMVTTACHEFFE 90
>ref|NP_035440.1| protein S100-A3 [Mus musculus].
Length = 101
Score = 89.7 bits (221), Expect = 1e-18
Identities = 43/97 (44%), Positives = 63/97 (64%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M+ PLEQA+A +V TF +Y+G+ GDK+K+ + E+KELL KELP++ + E K M
Sbjct: 1 MTRPLEQAVAAIVCTFQEYAGRCGDKYKICQSELKELLQKELPTWTPSEFRECDYNKFMS 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPQRP 341
LD N D +VDF EY LA + + C+++F+ P P
Sbjct: 61 VLDTNKDCEVDFGEYVRSLASLCLYCHEYFKECPPEP 97
>ref|NP_033138.1| protein S100-A10 [Mus musculus].
Length = 97
Score = 70.1 bits (170), Expect = 9e-13
Identities = 34/90 (37%), Positives = 56/90 (62%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M S +E A+ M+ TFH+++G DK L+K +++ L+ +E P F+ + D + K+M
Sbjct: 1 MPSQMEHAMETMMLTFHRFAG---DKDHLTKEDLRVLMEREFPGFLENQKDPLAVDKIMK 57
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFF 320
DLD+ D +V FQ + +A +TI CND+F
Sbjct: 58 DLDQCRDGKVGFQSFLSLVAGLTIACNDYF 87
>ref|XP_003084639.1| PREDICTED: protein S100-A11-like [Mus musculus].
Length = 96
Score = 66.6 bits (161), Expect = 1e-11
Identities = 33/96 (34%), Positives = 55/96 (57%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M + E+ + ++A F KYSG++G+ +LSK E ++ EL +F + D L ++M
Sbjct: 1 MPTETERCIESLIAVFQKYSGKDGNNTQLSKTEFLSFMNTELAAFTKNQKDPGVLDRMMK 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPQR 338
LD N D Q+DFQE+ + + I C+D F + Q+
Sbjct: 61 KLDLNCDGQLDFQEFLNLIGSLAIACHDSFIQTSQK 96
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 16,900,094
Number of extensions: 486087
Number of successful extensions: 2468
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 2449
Number of HSP's successfully gapped: 26
Length of query: 180
Length of database: 15,617,559
Length adjustment: 95
Effective length of query: 85
Effective length of database: 12,764,139
Effective search space: 1084951815
Effective search space used: 1084951815
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009138
(541 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005969.1| protein S100-A2 [Homo sapiens]. 179 2e-45
Alignment gi|NP_062427.1| protein S100-A4 [Homo sapiens]. 134 4e-32
Alignment gi|NP_002952.1| protein S100-A4 [Homo sapiens]. 134 4e-32
Alignment gi|NP_006262.1| protein S100-A1 [Homo sapiens]. 100 8e-22
Alignment gi|NP_055439.1| protein S100-A6 [Homo sapiens]. 98 5e-21
Alignment gi|NP_002953.2| protein S100-A5 [Homo sapiens]. 97 8e-21
Alignment gi|NP_570128.2| protein S100-Z [Homo sapiens]. 91 5e-19
Alignment gi|NP_006263.1| protein S100-B [Homo sapiens]. 91 5e-19
Alignment gi|NP_002951.1| protein S100-A3 [Homo sapiens]. 88 4e-18
Alignment gi|NP_005971.1| protein S100-P [Homo sapiens]. 87 1e-17
>ref|NP_005969.1| protein S100-A2 [Homo sapiens].
Length = 97
Score = 179 bits (453), Expect = 2e-45
Identities = 88/97 (90%), Positives = 90/97 (92%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M S LEQALAV+V TFHKYS QEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG
Sbjct: 1 MCSSLEQALAVLVTTFHKYSCQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPQRP 341
LDENSDQQVDFQEYAVFLALIT+MCNDFFQG P RP
Sbjct: 61 SLDENSDQQVDFQEYAVFLALITVMCNDFFQGCPDRP 97
>ref|NP_062427.1| protein S100-A4 [Homo sapiens].
Length = 101
Score = 134 bits (338), Expect = 4e-32
Identities = 61/96 (63%), Positives = 79/96 (82%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M+ PLE+AL VMV+TFHKYSG+EGDKFKL+K E+KELL +ELPSF+G++ DE +KLM
Sbjct: 1 MACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPQR 338
+LD N D +VDFQEY VFL+ I +MCN+FF+G P +
Sbjct: 61 NLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGFPDK 96
>ref|NP_002952.1| protein S100-A4 [Homo sapiens].
Length = 101
Score = 134 bits (338), Expect = 4e-32
Identities = 61/96 (63%), Positives = 79/96 (82%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M+ PLE+AL VMV+TFHKYSG+EGDKFKL+K E+KELL +ELPSF+G++ DE +KLM
Sbjct: 1 MACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPQR 338
+LD N D +VDFQEY VFL+ I +MCN+FF+G P +
Sbjct: 61 NLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGFPDK 96
>ref|NP_006262.1| protein S100-A1 [Homo sapiens].
Length = 94
Score = 100 bits (249), Expect = 8e-22
Identities = 46/90 (51%), Positives = 64/90 (71%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M S LE A+ ++ FH +SG+EGDK+KLSK E+KELL EL F+ + D + + K+M
Sbjct: 1 MGSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDVDAVDKVMK 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFF 320
+LDEN D +VDFQEY V +A +T+ CN+FF
Sbjct: 61 ELDENGDGEVDFQEYVVLVAALTVACNNFF 90
>ref|NP_055439.1| protein S100-A6 [Homo sapiens].
Length = 90
Score = 97.8 bits (242), Expect = 5e-21
Identities = 46/92 (50%), Positives = 66/92 (71%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M+ PL+QA+ ++VA FHKYSG+EGDK LSK E+KEL+ KEL +G K+ + + +LM
Sbjct: 1 MACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELT--IGSKLQDAEIARLME 58
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFFQG 326
DLD N DQ+V+FQEY FL + ++ N+ +G
Sbjct: 59 DLDRNKDQEVNFQEYVTFLGALALIYNEALKG 90
>ref|NP_002953.2| protein S100-A5 [Homo sapiens].
Length = 92
Score = 97.1 bits (240), Expect = 8e-21
Identities = 49/90 (54%), Positives = 66/90 (73%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M +PLE+AL MV TFHKYSG+EG K LS+ E+KEL+ KEL +GE + E + LM
Sbjct: 1 METPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKEL--CLGE-MKESSIDDLMK 57
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFF 320
LD+NSDQ++DF+EY+VFL ++ + NDFF
Sbjct: 58 SLDKNSDQEIDFKEYSVFLTMLCMAYNDFF 87
>ref|NP_570128.2| protein S100-Z [Homo sapiens].
Length = 99
Score = 91.3 bits (225), Expect = 5e-19
Identities = 41/90 (45%), Positives = 62/90 (68%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M + LE A+ M+ FH+YSG+E +FKLSKGE+K LL +EL F+ + + + + K++
Sbjct: 1 MPTQLEMAMDTMIRIFHRYSGKERKRFKLSKGELKLLLQRELTEFLSCQKETQLVDKIVQ 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFF 320
DLD N D +VDF E+ V +A +T+ CND+F
Sbjct: 61 DLDANKDNEVDFNEFVVMVAALTVACNDYF 90
>ref|NP_006263.1| protein S100-B [Homo sapiens].
Length = 92
Score = 91.3 bits (225), Expect = 5e-19
Identities = 40/89 (44%), Positives = 63/89 (70%)
Frame = +3
Query: 57 SPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGDL 236
S LE+A+ ++ FH+YSG+EGDK KL K E+KEL++ EL F+ E ++E + K+M L
Sbjct: 2 SELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETL 61
Query: 237 DENSDQQVDFQEYAVFLALITIMCNDFFQ 323
D + D + DFQE+ F+A++T C++FF+
Sbjct: 62 DNDGDGECDFQEFMAFVAMVTTACHEFFE 90
>ref|NP_002951.1| protein S100-A3 [Homo sapiens].
Length = 101
Score = 88.2 bits (217), Expect = 4e-18
Identities = 43/97 (44%), Positives = 62/97 (63%)
Frame = +3
Query: 51 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 230
M+ PLEQA+A +V TF +Y+G+ GDK+KL + E+KELL KEL ++ + E K M
Sbjct: 1 MARPLEQAVAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMS 60
Query: 231 DLDENSDQQVDFQEYAVFLALITIMCNDFFQGSPQRP 341
LD N D +VDF EY LA + + C+++F+ P P
Sbjct: 61 VLDTNKDCEVDFVEYVRSLACLCLYCHEYFKDCPSEP 97
>ref|NP_005971.1| protein S100-P [Homo sapiens].
Length = 95
Score = 86.7 bits (213), Expect = 1e-17
Identities = 40/87 (45%), Positives = 58/87 (66%)
Frame = +3
Query: 63 LEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGDLDE 242
LE A+ +++ F +YSG EG L+KGE+K L+ KELP F+ D++ + KL+ DLD
Sbjct: 4 LETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDA 63
Query: 243 NSDQQVDFQEYAVFLALITIMCNDFFQ 323
N D QVDF E+ VF+A IT C+ +F+
Sbjct: 64 NGDAQVDFSEFIVFVAAITSACHKYFE 90
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 20,059,774
Number of extensions: 586043
Number of successful extensions: 3272
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 3242
Number of HSP's successfully gapped: 23
Length of query: 180
Length of database: 18,297,164
Length adjustment: 96
Effective length of query: 84
Effective length of database: 15,132,620
Effective search space: 1271140080
Effective search space used: 1271140080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009138
(541 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118413.1| Sus scrofa unplaced genomic scaffold ChrUScaf185 496 e-138
Sscrofa_Chr04 496 e-138
>gb|JH118413.1| Sus scrofa unplaced genomic scaffold ChrUScaf185
Length = 34367
Score = 496 bits (250), Expect = e-138
Identities = 253/254 (99%)
Strand = Plus / Minus
Query: 191 ggagaaggtagatgaggaaggcctgaagaagctaatgggtgatctggatgagaacagcga 250
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 26873 ggagaaggtagatgaggaaggcctgaagaagctgatgggtgatctggatgagaacagcga 26814
Query: 251 tcagcaggtggacttccaggagtatgccgttttcctggccctcatcactatcatgtgcaa 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26813 tcagcaggtggacttccaggagtatgccgttttcctggccctcatcactatcatgtgcaa 26754
Query: 311 tgacttcttccagggctccccacagcggccctgaggcagagtgcttggctccctgtgtgg 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26753 tgacttcttccagggctccccacagcggccctgaggcagagtgcttggctccctgtgtgg 26694
Query: 371 gtctcttgggcccaggaggactctctatcttttttagttttatattcaataaactttttt 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26693 gtctcttgggcccaggaggactctctatcttttttagttttatattcaataaactttttt 26634
Query: 431 tgcatgttgacaat 444
||||||||||||||
Sbjct: 26633 tgcatgttgacaat 26620
Score = 299 bits (151), Expect = 8e-79
Identities = 154/155 (99%)
Strand = Plus / Minus
Query: 38 gcccagatccaagatgtccagtcccctggagcaggcgctggctgtgatggttgccacctt 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28430 gcccagatccaagatgtccagtcccctggagcaggcgctggctgtgatggttgccacctt 28371
Query: 98 ccacaagtactcgggccaagaaggtgacaaatttaagctgagtaagggggagatgaagga 157
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 28370 ccacaagtactcgggccaagaaggtgacaaattcaagctgagtaagggggagatgaagga 28311
Query: 158 acttctccacaaggagctgcccagctttgtagggg 192
|||||||||||||||||||||||||||||||||||
Sbjct: 28310 acttctccacaaggagctgcccagctttgtagggg 28276
Score = 73.8 bits (37), Expect = 9e-11
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 2 actttccttcccaagcctgtctctgccgtcaggtctg 38
|||||||||||||||||||||||||||||||||||||
Sbjct: 29880 actttccttcccaagcctgtctctgccgtcaggtctg 29844
Score = 58.0 bits (29), Expect = 5e-06
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 60 cccctggagcaggcgctggctgtgatggttgccaccttccacaagtactcgggccaagaa 119
||||||||| |||| || | ||||||||| ||||||||||||||||||| ||| | ||
Sbjct: 15136 cccctggagaaggccctcgatgtgatggtgtccaccttccacaagtactcaggcaaggag 15077
Query: 120 ggtgacaaatttaagct 136
|||||||| || |||||
Sbjct: 15076 ggtgacaagttcaagct 15060
>Sscrofa_Chr04
|| Length = 143465943
Score = 496 bits (250), Expect = e-138
Identities = 253/254 (99%)
Strand = Plus / Minus
Query: 191 ggagaaggtagatgaggaaggcctgaagaagctaatgggtgatctggatgagaacagcga 250
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 104922729 ggagaaggtagatgaggaaggcctgaagaagctgatgggtgatctggatgagaacagcga 104922670
Query: 251 tcagcaggtggacttccaggagtatgccgttttcctggccctcatcactatcatgtgcaa 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104922669 tcagcaggtggacttccaggagtatgccgttttcctggccctcatcactatcatgtgcaa 104922610
Query: 311 tgacttcttccagggctccccacagcggccctgaggcagagtgcttggctccctgtgtgg 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104922609 tgacttcttccagggctccccacagcggccctgaggcagagtgcttggctccctgtgtgg 104922550
Query: 371 gtctcttgggcccaggaggactctctatcttttttagttttatattcaataaactttttt 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104922549 gtctcttgggcccaggaggactctctatcttttttagttttatattcaataaactttttt 104922490
Query: 431 tgcatgttgacaat 444
||||||||||||||
Sbjct: 104922489 tgcatgttgacaat 104922476
Score = 299 bits (151), Expect = 8e-79
Identities = 154/155 (99%)
Strand = Plus / Minus
Query: 38 gcccagatccaagatgtccagtcccctggagcaggcgctggctgtgatggttgccacctt 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104924303 gcccagatccaagatgtccagtcccctggagcaggcgctggctgtgatggttgccacctt 104924244
Query: 98 ccacaagtactcgggccaagaaggtgacaaatttaagctgagtaagggggagatgaagga 157
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 104924243 ccacaagtactcgggccaagaaggtgacaaattcaagctgagtaagggggagatgaagga 104924184
Query: 158 acttctccacaaggagctgcccagctttgtagggg 192
|||||||||||||||||||||||||||||||||||
Sbjct: 104924183 acttctccacaaggagctgcccagctttgtagggg 104924149
Score = 73.8 bits (37), Expect = 9e-11
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 2 actttccttcccaagcctgtctctgccgtcaggtctg 38
|||||||||||||||||||||||||||||||||||||
Sbjct: 104925684 actttccttcccaagcctgtctctgccgtcaggtctg 104925648
Score = 58.0 bits (29), Expect = 5e-06
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 60 cccctggagcaggcgctggctgtgatggttgccaccttccacaagtactcgggccaagaa 119
||||||||| |||| || | ||||||||| ||||||||||||||||||| ||| | ||
Sbjct: 104910046 cccctggagaaggccctcgatgtgatggtgtccaccttccacaagtactcaggcaaggag 104909987
Query: 120 ggtgacaaatttaagct 136
|||||||| || |||||
Sbjct: 104909986 ggtgacaagttcaagct 104909970
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 15,172,235
Number of extensions: 443
Number of successful extensions: 443
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 8
Length of query: 541
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 520
Effective length of database: 2,808,413,156
Effective search space: 1460374841120
Effective search space used: 1460374841120
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)