Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009165
(912 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071473.1| sec1 family domain-containing protein 2 [Bos... 439 e-123
>ref|NP_001071473.1| sec1 family domain-containing protein 2 [Bos taurus].
Length = 684
Score = 439 bits (1128), Expect = e-123
Identities = 222/255 (87%), Positives = 227/255 (89%)
Frame = +3
Query: 147 MSIPGVLSFTQQAWEQVLAKVKRAVVYLDAASAESLHWGCGSSRLLEAVGSPACYLREFE 326
M+ PGVLSFTQQAWEQVLAK KRAVVYLDAA AESLHWGCGSSRLLEAVGSPACYLREFE
Sbjct: 1 MNTPGVLSFTQQAWEQVLAKAKRAVVYLDAACAESLHWGCGSSRLLEAVGSPACYLREFE 60
Query: 327 PAAVGGGADQPKAVFVLSCLLKGRTVETLRDIICRSHFQYCVVVTAVNHAVHLTANHVPA 506
PAAVGGG +QPKAVFVLS LLKGR VETLRDIICRSHFQYCVVVTAVNHAVHLTANHVPA
Sbjct: 61 PAAVGGGVEQPKAVFVLSSLLKGRIVETLRDIICRSHFQYCVVVTAVNHAVHLTANHVPA 120
Query: 507 AAAAELEGQQPVFEQLEEKLCEWMGNMNYTAEXXXXXXXXXXXXXXXXXXXXFASLFPLL 686
AAAAELEGQQPVFEQLEEKLCEWMGNMNYTAE FASLFPLL
Sbjct: 121 AAAAELEGQQPVFEQLEEKLCEWMGNMNYTAEVLHIPLLLAPVAPHLALTPAFASLFPLL 180
Query: 687 PQDVHILNGARPDKRRLGSLSEVDATALTPELLLQIRCLVSGLSSLCEHLGVREECFAVS 866
PQDVHILN ARPD+RRLGSL+EVDATALTPELLLQIRCLVSGLSSLCEHLGVREECFAV
Sbjct: 181 PQDVHILNSARPDRRRLGSLAEVDATALTPELLLQIRCLVSGLSSLCEHLGVREECFAVG 240
Query: 867 SLSRIIAADLANFAP 911
+LSRIIAADLANFAP
Sbjct: 241 ALSRIIAADLANFAP 255
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,936,445
Number of extensions: 1086157
Number of successful extensions: 5040
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4958
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 202
Effective length of database: 14,306,398
Effective search space: 2889892396
Effective search space used: 2889892396
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009165
(912 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849695.1| PREDICTED: similar to sec1 family domain contai... 416 e-116
Alignment gi|XP_539268.2| PREDICTED: similar to sec1 family domain contai... 416 e-116
>ref|XP_849695.1| PREDICTED: similar to sec1 family domain containing 2 isoform 2
[Canis familiaris].
Length = 683
Score = 416 bits (1068), Expect = e-116
Identities = 213/255 (83%), Positives = 223/255 (87%)
Frame = +3
Query: 147 MSIPGVLSFTQQAWEQVLAKVKRAVVYLDAASAESLHWGCGSSRLLEAVGSPACYLREFE 326
MS PGVLSFTQQ WEQVLAKVKRA+VYLDAA AESLHWGCG+SRLLEAVG PAC+LREFE
Sbjct: 1 MSAPGVLSFTQQGWEQVLAKVKRALVYLDAACAESLHWGCGASRLLEAVGGPACHLREFE 60
Query: 327 PAAVGGGADQPKAVFVLSCLLKGRTVETLRDIICRSHFQYCVVVTAVNHAVHLTANHVPA 506
PAAVGGGA+QPKAVFVLSCLLKGRTVETLR+II RS FQYCVVVTAV+HA HLTANHVPA
Sbjct: 61 PAAVGGGAEQPKAVFVLSCLLKGRTVETLREIIGRSRFQYCVVVTAVSHAAHLTANHVPA 120
Query: 507 AAAAELEGQQPVFEQLEEKLCEWMGNMNYTAEXXXXXXXXXXXXXXXXXXXXFASLFPLL 686
AAAAELEG QPVFEQLEEKLCEWMGNMNYTAE FASLFPLL
Sbjct: 121 AAAAELEG-QPVFEQLEEKLCEWMGNMNYTAEVLHVPLWLAPVAPHLALTPAFASLFPLL 179
Query: 687 PQDVHILNGARPDKRRLGSLSEVDATALTPELLLQIRCLVSGLSSLCEHLGVREECFAVS 866
P+DVH+LN ARPDKRRLGSLSEVDA AL PELLLQIRCLVSGLSSLCEHLGVREECFAV
Sbjct: 180 PRDVHLLNRARPDKRRLGSLSEVDAAALPPELLLQIRCLVSGLSSLCEHLGVREECFAVG 239
Query: 867 SLSRIIAADLANFAP 911
SLSRIIAADLA++AP
Sbjct: 240 SLSRIIAADLASYAP 254
>ref|XP_539268.2| PREDICTED: similar to sec1 family domain containing 2 isoform 1
[Canis familiaris].
Length = 643
Score = 416 bits (1068), Expect = e-116
Identities = 213/255 (83%), Positives = 223/255 (87%)
Frame = +3
Query: 147 MSIPGVLSFTQQAWEQVLAKVKRAVVYLDAASAESLHWGCGSSRLLEAVGSPACYLREFE 326
MS PGVLSFTQQ WEQVLAKVKRA+VYLDAA AESLHWGCG+SRLLEAVG PAC+LREFE
Sbjct: 1 MSAPGVLSFTQQGWEQVLAKVKRALVYLDAACAESLHWGCGASRLLEAVGGPACHLREFE 60
Query: 327 PAAVGGGADQPKAVFVLSCLLKGRTVETLRDIICRSHFQYCVVVTAVNHAVHLTANHVPA 506
PAAVGGGA+QPKAVFVLSCLLKGRTVETLR+II RS FQYCVVVTAV+HA HLTANHVPA
Sbjct: 61 PAAVGGGAEQPKAVFVLSCLLKGRTVETLREIIGRSRFQYCVVVTAVSHAAHLTANHVPA 120
Query: 507 AAAAELEGQQPVFEQLEEKLCEWMGNMNYTAEXXXXXXXXXXXXXXXXXXXXFASLFPLL 686
AAAAELEG QPVFEQLEEKLCEWMGNMNYTAE FASLFPLL
Sbjct: 121 AAAAELEG-QPVFEQLEEKLCEWMGNMNYTAEVLHVPLWLAPVAPHLALTPAFASLFPLL 179
Query: 687 PQDVHILNGARPDKRRLGSLSEVDATALTPELLLQIRCLVSGLSSLCEHLGVREECFAVS 866
P+DVH+LN ARPDKRRLGSLSEVDA AL PELLLQIRCLVSGLSSLCEHLGVREECFAV
Sbjct: 180 PRDVHLLNRARPDKRRLGSLSEVDAAALPPELLLQIRCLVSGLSSLCEHLGVREECFAVG 239
Query: 867 SLSRIIAADLANFAP 911
SLSRIIAADLA++AP
Sbjct: 240 SLSRIIAADLASYAP 254
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,442,657
Number of extensions: 1112730
Number of successful extensions: 4883
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4834
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 202
Effective length of database: 15,474,232
Effective search space: 3125794864
Effective search space used: 3125794864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009165
(912 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,832,150
Number of extensions: 700211
Number of successful extensions: 3107
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3059
Number of HSP's successfully gapped: 0
Length of query: 304
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 205
Effective length of database: 8,879,129
Effective search space: 1820221445
Effective search space used: 1820221445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009165
(912 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001108132.1| sec1 family domain-containing protein 2 isof... 392 e-109
Alignment gi|NP_848787.2| sec1 family domain-containing protein 2 isoform... 392 e-109
>ref|NP_001108132.1| sec1 family domain-containing protein 2 isoform a [Mus musculus].
Length = 684
Score = 392 bits (1007), Expect = e-109
Identities = 198/255 (77%), Positives = 211/255 (82%)
Frame = +3
Query: 147 MSIPGVLSFTQQAWEQVLAKVKRAVVYLDAASAESLHWGCGSSRLLEAVGSPACYLREFE 326
MS G+L+F QQ WEQVLAKVK +VVYLDAA AESLHW CGSSRLLEAV PAC+LREFE
Sbjct: 1 MSAAGILAFAQQGWEQVLAKVKWSVVYLDAACAESLHWSCGSSRLLEAVKGPACHLREFE 60
Query: 327 PAAVGGGADQPKAVFVLSCLLKGRTVETLRDIICRSHFQYCVVVTAVNHAVHLTANHVPA 506
P A+GGGA QP+AVFVLS LKGR V+TL+ IICRSHFQ+CVVVTAV+HAVHLTANHVPA
Sbjct: 61 PQAIGGGAKQPRAVFVLSSPLKGRIVDTLQSIICRSHFQHCVVVTAVSHAVHLTANHVPA 120
Query: 507 AAAAELEGQQPVFEQLEEKLCEWMGNMNYTAEXXXXXXXXXXXXXXXXXXXXFASLFPLL 686
AAAAELEGQQPVFEQLEEKLCEWMGN NYTAE FA+LFPLL
Sbjct: 121 AAAAELEGQQPVFEQLEEKLCEWMGNENYTAEVLHVPLFLAPVASHLAFTPAFATLFPLL 180
Query: 687 PQDVHILNGARPDKRRLGSLSEVDATALTPELLLQIRCLVSGLSSLCEHLGVREECFAVS 866
PQDVH LN ARPDKRRL SL EVDATALTPELLL IRCLVSGLSSLCEHLGVREECFAV
Sbjct: 181 PQDVHALNSARPDKRRLSSLGEVDATALTPELLLYIRCLVSGLSSLCEHLGVREECFAVG 240
Query: 867 SLSRIIAADLANFAP 911
LSR+IA DLAN+AP
Sbjct: 241 PLSRVIATDLANYAP 255
>ref|NP_848787.2| sec1 family domain-containing protein 2 isoform b [Mus musculus].
Length = 477
Score = 392 bits (1007), Expect = e-109
Identities = 198/255 (77%), Positives = 211/255 (82%)
Frame = +3
Query: 147 MSIPGVLSFTQQAWEQVLAKVKRAVVYLDAASAESLHWGCGSSRLLEAVGSPACYLREFE 326
MS G+L+F QQ WEQVLAKVK +VVYLDAA AESLHW CGSSRLLEAV PAC+LREFE
Sbjct: 1 MSAAGILAFAQQGWEQVLAKVKWSVVYLDAACAESLHWSCGSSRLLEAVKGPACHLREFE 60
Query: 327 PAAVGGGADQPKAVFVLSCLLKGRTVETLRDIICRSHFQYCVVVTAVNHAVHLTANHVPA 506
P A+GGGA QP+AVFVLS LKGR V+TL+ IICRSHFQ+CVVVTAV+HAVHLTANHVPA
Sbjct: 61 PQAIGGGAKQPRAVFVLSSPLKGRIVDTLQSIICRSHFQHCVVVTAVSHAVHLTANHVPA 120
Query: 507 AAAAELEGQQPVFEQLEEKLCEWMGNMNYTAEXXXXXXXXXXXXXXXXXXXXFASLFPLL 686
AAAAELEGQQPVFEQLEEKLCEWMGN NYTAE FA+LFPLL
Sbjct: 121 AAAAELEGQQPVFEQLEEKLCEWMGNENYTAEVLHVPLFLAPVASHLAFTPAFATLFPLL 180
Query: 687 PQDVHILNGARPDKRRLGSLSEVDATALTPELLLQIRCLVSGLSSLCEHLGVREECFAVS 866
PQDVH LN ARPDKRRL SL EVDATALTPELLL IRCLVSGLSSLCEHLGVREECFAV
Sbjct: 181 PQDVHALNSARPDKRRLSSLGEVDATALTPELLLYIRCLVSGLSSLCEHLGVREECFAVG 240
Query: 867 SLSRIIAADLANFAP 911
LSR+IA DLAN+AP
Sbjct: 241 PLSRVIATDLANYAP 255
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,912,989
Number of extensions: 910366
Number of successful extensions: 4542
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4341
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 203
Effective length of database: 12,583,923
Effective search space: 2554536369
Effective search space used: 2554536369
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009165
(912 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_689753.2| sec1 family domain-containing protein 2 [Homo s... 420 e-118
>ref|NP_689753.2| sec1 family domain-containing protein 2 [Homo sapiens].
Length = 684
Score = 420 bits (1080), Expect = e-118
Identities = 209/255 (81%), Positives = 221/255 (86%)
Frame = +3
Query: 147 MSIPGVLSFTQQAWEQVLAKVKRAVVYLDAASAESLHWGCGSSRLLEAVGSPACYLREFE 326
MS GVLSFTQQ WEQVLAKVKRAVVYLDAA AESLHWGCGS+RLLEAVG P C+LREFE
Sbjct: 1 MSASGVLSFTQQGWEQVLAKVKRAVVYLDAACAESLHWGCGSTRLLEAVGGPDCHLREFE 60
Query: 327 PAAVGGGADQPKAVFVLSCLLKGRTVETLRDIICRSHFQYCVVVTAVNHAVHLTANHVPA 506
P A+GGGA QPKAVFVLSCLLKGRTVE LRDIICRSHFQYCVVVT V+HAVHLTANHVPA
Sbjct: 61 PDAIGGGAKQPKAVFVLSCLLKGRTVEILRDIICRSHFQYCVVVTTVSHAVHLTANHVPA 120
Query: 507 AAAAELEGQQPVFEQLEEKLCEWMGNMNYTAEXXXXXXXXXXXXXXXXXXXXFASLFPLL 686
AAAAE+EGQQPVFEQLEEKLCEWMGNMNYTAE FASLFPLL
Sbjct: 121 AAAAEMEGQQPVFEQLEEKLCEWMGNMNYTAEVFHVPLLLAPVAPHFALTPAFASLFPLL 180
Query: 687 PQDVHILNGARPDKRRLGSLSEVDATALTPELLLQIRCLVSGLSSLCEHLGVREECFAVS 866
PQDVH+LN ARPDKR+LGSL +VD+T LTPELLLQIRCLVSGLSSLCEHLGVREECFAV
Sbjct: 181 PQDVHLLNSARPDKRKLGSLGDVDSTTLTPELLLQIRCLVSGLSSLCEHLGVREECFAVG 240
Query: 867 SLSRIIAADLANFAP 911
SLS++IAADLAN+AP
Sbjct: 241 SLSQVIAADLANYAP 255
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,744,079
Number of extensions: 1089737
Number of successful extensions: 4738
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4647
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 202
Effective length of database: 14,934,836
Effective search space: 3016836872
Effective search space used: 3016836872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009165
(912 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 1798 0.0
>Sscrofa_Chr08
|| Length = 148491826
Score = 1798 bits (907), Expect = 0.0
Identities = 910/911 (99%)
Strand = Plus / Minus
Query: 1 tactctgcgccgacactggacgagtcagaagcatccacacgtgtactgtgttgactgtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42271314 tactctgcgccgacactggacgagtcagaagcatccacacgtgtactgtgttgactgtca 42271255
Query: 61 atgtctccgggactccaattcccggaagctgtgagttctaagagaagttcccgcacttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42271254 atgtctccgggactccaattcccggaagctgtgagttctaagagaagttcccgcacttgg 42271195
Query: 121 tgccccgattctgcgaattcccaaccatgagcatccccggagtgctgtcctttacccagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42271194 tgccccgattctgcgaattcccaaccatgagcatccccggagtgctgtcctttacccagc 42271135
Query: 181 aagcctgggagcaggtgctggccaaagtgaaacgggccgtagtctacctggacgccgcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42271134 aagcctgggagcaggtgctggccaaagtgaaacgggccgtagtctacctggacgccgcca 42271075
Query: 241 gcgcggaaagcctgcactggggctgcgggtcctcgcgactgttggaggcggtggggagcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42271074 gcgcggaaagcctgcactggggctgcgggtcctcgcgactgttggaggcggtggggagcc 42271015
Query: 301 ctgcgtgttacctcagggagttcgagcccgctgcagttggtggcggagccgatcagccca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42271014 ctgcgtgttacctcagggagttcgagcccgctgcagttggtggcggagccgatcagccca 42270955
Query: 361 aggcggtgtttgtactgagctgcctgctgaaaggccggaccgtggagaccctacgggata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42270954 aggcggtgtttgtactgagctgcctgctgaaaggccggaccgtggagaccctacgggata 42270895
Query: 421 tcatctgtcgcagtcacttccagtattgtgtggtggtcacggctgtgaaccatgcagtcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42270894 tcatctgtcgcagtcacttccagtattgtgtggtggtcacggctgtgaaccatgcagtcc 42270835
Query: 481 acctcacagctaatcacgtgccggcggccgcagcggcagagctggaagggcagcagccgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42270834 acctcacagctaatcacgtgccggcggccgcagcggcagagctggaagggcagcagccgg 42270775
Query: 541 tgttcgagcaactggaggagaagctgtgcgagtggatgggcaacatgaactacaccgctg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42270774 tgttcgagcaactggaggagaagctgtgcgagtggatgggcaacatgaactacaccgctg 42270715
Query: 601 aagtgctgcacatcccgttgttactcgctcctgttgctccccaccttgccttgactccag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42270714 aagtgctgcacatcccgttgttactcgctcctgttgctccccaccttgccttgactccag 42270655
Query: 661 cttttgcttcccttttcccactattaccccaagatgtgcatatcctcaacggtgcccgac 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42270654 cttttgcttcccttttcccactattaccccaagatgtgcatatcctcaacggtgcccgac 42270595
Query: 721 cggataagaggagactaggaagcctgagtgaggtggatgccactgccctcacccctgagc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42270594 cggataagaggagactaggaagcctgagtgaggtggatgccactgccctcacccctgagc 42270535
Query: 781 tgctgctgcagatcaggtgcctagtgtcaggcctcagttccctgtgtgagcatttagggg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42270534 tgctgctgcagatcaggtgcctagtgtcaggcctcagttccctgtgtgagcatttagggg 42270475
Query: 841 tacgggaggagtgttttgctgtaagttccctcagtcgaattatcgctgcagatctggcca 900
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 42270474 tacgggaggagtgttttgctgtaggttccctcagtcgaattatcgctgcagatctggcca 42270415
Query: 901 attttgctccc 911
|||||||||||
Sbjct: 42270414 attttgctccc 42270404
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,592,665
Number of extensions: 122
Number of successful extensions: 122
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 1
Length of query: 912
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 891
Effective length of database: 2,808,413,156
Effective search space: 2502296121996
Effective search space used: 2502296121996
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)