Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009175
(952 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001093781.1| N-acetylglucosaminyl-phosphatidylinositol de... 357 1e-98
>ref|NP_001093781.1| N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase [Bos
taurus].
Length = 253
Score = 357 bits (915), Expect = 1e-98
Identities = 180/229 (78%), Positives = 193/229 (84%)
Frame = +3
Query: 93 AWERMKSQEQAGLPGGGSRALLVTAHPDDEAMFFAPTILGLARLGHQLSLLCFSAGDYYN 272
+WERM EQAGLPGGGSR LLVTAHPDDEAMFFAPTILGLARL HQL LLCFSAG+YYN
Sbjct: 25 SWERMTRPEQAGLPGGGSRTLLVTAHPDDEAMFFAPTILGLARLRHQLFLLCFSAGNYYN 84
Query: 273 QGEIRKKELLQSCDVLGIPSSSVTIIDNRDFPDNPAVRWDPGRVADVLLRHIELNSIDLV 452
QGEIRKKELLQSCDVLGIP S+V II+NRDFPD+P VRWDP R ADVLL+H+E N I LV
Sbjct: 85 QGEIRKKELLQSCDVLGIPPSNVMIIENRDFPDDPDVRWDPDRAADVLLQHVEANGIKLV 144
Query: 453 VTFDAGGVSGHSNHVALYAAARTLCAEGKLPKGCKVLALQSVNRLRKYISXXXXXXXXXX 632
VTFD GGVSGHSNHVAL AA RTL AEGKLPKGC VL LQSVN LRKY+
Sbjct: 145 VTFDEGGVSGHSNHVALNAAVRTLQAEGKLPKGCSVLTLQSVNLLRKYLCLLDLPCSLLL 204
Query: 633 ARDALFVLTRQEVAQAQKAMSRHRSQLLWFRRLYVLFSRYLRINSLRRL 779
ARDALFVLT++E AQAQ+AMS HRSQLLWFRRLY+LFSRY+RINSL L
Sbjct: 205 ARDALFVLTQREAAQAQRAMSCHRSQLLWFRRLYMLFSRYMRINSLNFL 253
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,649,432
Number of extensions: 876069
Number of successful extensions: 5218
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5195
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,306,398
Effective search space: 3075875570
Effective search space used: 3075875570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009175
(952 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536652.1| PREDICTED: similar to N-acetylglucosaminyl-phos... 348 4e-96
>ref|XP_536652.1| PREDICTED: similar to N-acetylglucosaminyl-phosphatidylinositol
de-N-acetylase (Phosphatidylinositol-glycan
biosynthesis, class L protein) (PIG-L) [Canis
familiaris].
Length = 362
Score = 348 bits (893), Expect = 4e-96
Identities = 174/227 (76%), Positives = 195/227 (85%)
Frame = +3
Query: 90 DAWERMKSQEQAGLPGGGSRALLVTAHPDDEAMFFAPTILGLARLGHQLSLLCFSAGDYY 269
D+ ER KSQEQAG+ G GSR LLV AHPDDEAMFFAPT+LGLARLGH+LSLLCFSAG++Y
Sbjct: 133 DSRERTKSQEQAGVLGDGSRTLLVIAHPDDEAMFFAPTVLGLARLGHRLSLLCFSAGNFY 192
Query: 270 NQGEIRKKELLQSCDVLGIPSSSVTIIDNRDFPDNPAVRWDPGRVADVLLRHIELNSIDL 449
NQGEIRKKELLQSCDVLGIP SS+ IIDNRDFPD+P+VRWD RVA +LL+HIE+NSI+L
Sbjct: 193 NQGEIRKKELLQSCDVLGIPPSSIMIIDNRDFPDDPSVRWDTERVASILLQHIEMNSINL 252
Query: 450 VVTFDAGGVSGHSNHVALYAAARTLCAEGKLPKGCKVLALQSVNRLRKYISXXXXXXXXX 629
VVTFD GGVSGHSNH+ALYAA RTL +EG+LPKGC VL LQSVN LRKYIS
Sbjct: 253 VVTFDEGGVSGHSNHIALYAAMRTLHSEGRLPKGCSVLTLQSVNVLRKYISLLDLPFTLL 312
Query: 630 XARDALFVLTRQEVAQAQKAMSRHRSQLLWFRRLYVLFSRYLRINSL 770
+D LFVLT +EVAQA++AMS H SQLLWFRRLYVLFSRY+RINSL
Sbjct: 313 RRQDVLFVLTSKEVAQAKRAMSCHHSQLLWFRRLYVLFSRYMRINSL 359
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,018,880
Number of extensions: 899953
Number of successful extensions: 5111
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5091
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 214
Effective length of database: 15,440,896
Effective search space: 3304351744
Effective search space used: 3304351744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009175
(952 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132072.1| PREDICTED: n-acetylglucosaminyl-phosphatidyl... 435 e-122
>ref|XP_003132072.1| PREDICTED: n-acetylglucosaminyl-phosphatidylinositol
de-N-acetylase-like [Sus scrofa].
Length = 253
Score = 435 bits (1119), Expect = e-122
Identities = 220/230 (95%), Positives = 220/230 (95%)
Frame = +3
Query: 90 DAWERMKSQEQAGLPGGGSRALLVTAHPDDEAMFFAPTILGLARLGHQLSLLCFSAGDYY 269
DAWERMKSQEQAGLPGGGSRALLVTAHPDDEAMFFAPTILGLARLGHQLSLLCFSAGDYY
Sbjct: 24 DAWERMKSQEQAGLPGGGSRALLVTAHPDDEAMFFAPTILGLARLGHQLSLLCFSAGDYY 83
Query: 270 NQGEIRKKELLQSCDVLGIPSSSVTIIDNRDFPDNPAVRWDPGRVADVLLRHIELNSIDL 449
NQGEIRKKELLQSCDVLGIPSSSVTIIDNRDFPDNPAVRWDPGRVADVLLRHIELNSIDL
Sbjct: 84 NQGEIRKKELLQSCDVLGIPSSSVTIIDNRDFPDNPAVRWDPGRVADVLLRHIELNSIDL 143
Query: 450 VVTFDAGGVSGHSNHVALYAAARTLCAEGKLPKGCKVLALQSVNRLRKYISXXXXXXXXX 629
VVTFDAGGVSGHSNHVALYAAARTLCAEGKLPKGCKVLALQSVNRLRKYIS
Sbjct: 144 VVTFDAGGVSGHSNHVALYAAARTLCAEGKLPKGCKVLALQSVNRLRKYISLLDLPCSLL 203
Query: 630 XARDALFVLTRQEVAQAQKAMSRHRSQLLWFRRLYVLFSRYLRINSLRRL 779
ARDALFVLTRQEVAQAQKAMSRHRSQLLWFRRLYVLFSRYLRINSLRRL
Sbjct: 204 LARDALFVLTRQEVAQAQKAMSRHRSQLLWFRRLYVLFSRYLRINSLRRL 253
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,780,395
Number of extensions: 567912
Number of successful extensions: 3508
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3497
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,879,129
Effective search space: 1935650122
Effective search space used: 1935650122
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009175
(952 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001034625.1| N-acetylglucosaminyl-phosphatidylinositol de... 320 8e-88
>ref|NP_001034625.1| N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase [Mus
musculus].
Length = 252
Score = 320 bits (821), Expect = 8e-88
Identities = 165/227 (72%), Positives = 180/227 (79%)
Frame = +3
Query: 99 ERMKSQEQAGLPGGGSRALLVTAHPDDEAMFFAPTILGLARLGHQLSLLCFSAGDYYNQG 278
ERM+S EQAGLPG GSRAL+V AHPDDEAMFFAPT+LGLARL Q+SLLCFS+G+YYNQG
Sbjct: 26 ERMRSPEQAGLPGAGSRALVVIAHPDDEAMFFAPTMLGLARLEQQVSLLCFSSGNYYNQG 85
Query: 279 EIRKKELLQSCDVLGIPSSSVTIIDNRDFPDNPAVRWDPGRVADVLLRHIELNSIDLVVT 458
EIRKKELLQSC VLGIP S V IID RDFPD+P V+WD VA LL+HI N DLVVT
Sbjct: 86 EIRKKELLQSCAVLGIPPSRVMIIDKRDFPDDPEVQWDTELVASTLLQHIHANGTDLVVT 145
Query: 459 FDAGGVSGHSNHVALYAAARTLCAEGKLPKGCKVLALQSVNRLRKYISXXXXXXXXXXAR 638
FDA GVSGHSNH+ALY A R L + GKLPKGC VL LQSVN LRKY +
Sbjct: 146 FDAEGVSGHSNHIALYKAVRALHSGGKLPKGCSVLTLQSVNALRKYAFLLDLPWTLLSPQ 205
Query: 639 DALFVLTRQEVAQAQKAMSRHRSQLLWFRRLYVLFSRYLRINSLRRL 779
D LFVLT +EVAQA+KAMS HRSQLLWFR LYVLFSRY+RINSLR L
Sbjct: 206 DVLFVLTSKEVAQAKKAMSCHRSQLLWFRYLYVLFSRYMRINSLRFL 252
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,823,064
Number of extensions: 724445
Number of successful extensions: 3737
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3723
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 216
Effective length of database: 12,583,923
Effective search space: 2718127368
Effective search space used: 2718127368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009175
(952 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004269.1| N-acetylglucosaminyl-phosphatidylinositol de-N-... 330 1e-90
>ref|NP_004269.1| N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase [Homo
sapiens].
Length = 252
Score = 330 bits (846), Expect = 1e-90
Identities = 167/227 (73%), Positives = 186/227 (81%)
Frame = +3
Query: 90 DAWERMKSQEQAGLPGGGSRALLVTAHPDDEAMFFAPTILGLARLGHQLSLLCFSAGDYY 269
D+ ERMKS+EQ G G SR LLV AHPDDEAMFFAPT+LGLARL H + LLCFSAG+YY
Sbjct: 23 DSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYY 82
Query: 270 NQGEIRKKELLQSCDVLGIPSSSVTIIDNRDFPDNPAVRWDPGRVADVLLRHIELNSIDL 449
NQGE RKKELLQSCDVLGIP SSV IIDNRDFPD+P ++WD VA VLL+HIE+N I+L
Sbjct: 83 NQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINL 142
Query: 450 VVTFDAGGVSGHSNHVALYAAARTLCAEGKLPKGCKVLALQSVNRLRKYISXXXXXXXXX 629
VVTFDAGGVSGHSNH+ALYAA R L +EGKLPKGC VL LQSVN LRKYIS
Sbjct: 143 VVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLL 202
Query: 630 XARDALFVLTRQEVAQAQKAMSRHRSQLLWFRRLYVLFSRYLRINSL 770
+D LFVL +EVAQA+KAMS HRSQLLWFRRLY++FSRY+RINSL
Sbjct: 203 HTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIFSRYMRINSL 249
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,275,282
Number of extensions: 875817
Number of successful extensions: 4963
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4940
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,934,836
Effective search space: 3210989740
Effective search space used: 3210989740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009175
(952 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 513 e-143
>Sscrofa_Chr12
|| Length = 63588571
Score = 513 bits (259), Expect = e-143
Identities = 259/259 (100%)
Strand = Plus / Minus
Query: 1 ggcgcagcgctcctcccggcatggaagtggcgggggtgctgctgtgtctggcggcggcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62381929 ggcgcagcgctcctcccggcatggaagtggcgggggtgctgctgtgtctggcggcggcgg 62381870
Query: 61 tcctggcatggggcctcctcagggtctgggacgcctgggagcgaatgaagagtcaggagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62381869 tcctggcatggggcctcctcagggtctgggacgcctgggagcgaatgaagagtcaggagc 62381810
Query: 121 aggcgggcctgccgggaggcggaagccgcgctctcctggtgaccgcgcaccccgacgatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62381809 aggcgggcctgccgggaggcggaagccgcgctctcctggtgaccgcgcaccccgacgatg 62381750
Query: 181 aagccatgttctttgctcccactattctgggcttggcccgcctggggcaccagctgtccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62381749 aagccatgttctttgctcccactattctgggcttggcccgcctggggcaccagctgtccc 62381690
Query: 241 tgctctgcttctctgcagg 259
|||||||||||||||||||
Sbjct: 62381689 tgctctgcttctctgcagg 62381671
Score = 492 bits (248), Expect = e-136
Identities = 267/272 (98%), Gaps = 1/272 (0%)
Strand = Plus / Minus
Query: 682 agaaagccatgtcccgccaccgcagccagctcctctggttccgccgcctgtacgtgctct 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62343459 agaaagccatgtcccgccaccgcagccagctcctctggttccgccgcctgtacgtgctct 62343400
Query: 742 tctccaggtacctgaggatcaactccctgcgccgcctctgagcctgggggccagggctcg 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62343399 tctccaggtacctgaggatcaactccctgcgccgcctctgagcctgggggccagggctcg 62343340
Query: 802 tccgcagcgggcacggcgcccctccagccggtcggccggcctctgcccaaagggaggctg 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62343339 tccgcagcgggcacggcgcccctccagccggtcggccggcctctgcccaaagggaggctg 62343280
Query: 862 tgcagaccagagtgtccccctctgggagcaaaaccaaacaaccgcacaccagcccagctg 921
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 62343279 tgcagaccagagtgtccccctctgggagcaaaaccaaacaaccgcacaccagccagcctg 62343220
Query: 922 aagatgactcca-gcaccccgctgcgtctcaa 952
| |||||||||| |||||||||||||||||||
Sbjct: 62343219 aggatgactccaggcaccccgctgcgtctcaa 62343188
Score = 270 bits (136), Expect = 1e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 548 agggtgcaaggtgctcgcactgcagtctgtgaaccggctgcggaagtacatctccctgct 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62344572 agggtgcaaggtgctcgcactgcagtctgtgaaccggctgcggaagtacatctccctgct 62344513
Query: 608 ggacctgccctgctccctgctgctcgcccgcgatgccctcttcgtgctcacccgccagga 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62344512 ggacctgccctgctccctgctgctcgcccgcgatgccctcttcgtgctcacccgccagga 62344453
Query: 668 ggtggcccaggcccag 683
||||||||||||||||
Sbjct: 62344452 ggtggcccaggcccag 62344437
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 256 caggagattactacaatcaaggggagattcgtaagaaagaactcctgcagagctgtgacg 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62371581 caggagattactacaatcaaggggagattcgtaagaaagaactcctgcagagctgtgacg 62371522
Query: 316 tgttggggatcccatcctccagcgtaacaatcattgacaacagg 359
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62371521 tgttggggatcccatcctccagcgtaacaatcattgacaacagg 62371478
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 356 cagggacttcccagacaacccggctgtgcggtgggacccagggcgggtggccgacgtcct 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62349849 cagggacttcccagacaacccggctgtgcggtgggacccagggcgggtggccgacgtcct 62349790
Query: 416 cctccggcacatagagctgaacagcatcgacctggt 451
||||||||||||||||||||||||||||||||||||
Sbjct: 62349789 cctccggcacatagagctgaacagcatcgacctggt 62349754
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 449 ggtggtgaccttcgacgcaggcggagtgagtggtcacagcaaccacgtggccctgtatgc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62347166 ggtggtgaccttcgacgcaggcggagtgagtggtcacagcaaccacgtggccctgtatgc 62347107
Query: 509 ggccgccagg 518
||||||||||
Sbjct: 62347106 ggccgccagg 62347097
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 514 ccaggaccctgtgcgcagaagggaagctccctaaagg 550
|||||||||||||||||||||||||||||||||||||
Sbjct: 62345848 ccaggaccctgtgcgcagaagggaagctccctaaagg 62345812
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,990,937
Number of extensions: 172
Number of successful extensions: 172
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 7
Length of query: 952
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 931
Effective length of database: 2,808,413,156
Effective search space: 2614632648236
Effective search space used: 2614632648236
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)