Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009183
(1033 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002685637.1| PREDICTED: hypothetical protein [Bos taurus]. 550 e-157
Alignment gi|XP_592223.3| PREDICTED: hypothetical protein [Bos taurus]. 550 e-157
>ref|XP_002685637.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 383
Score = 550 bits (1417), Expect = e-157
Identities = 272/331 (82%), Positives = 299/331 (90%)
Frame = +2
Query: 41 MSSKVQSKGSKAKDHQPSAQAGLPPPEANAEAIHFLDSLRQEELLMLLFSETLVMVSDTG 220
MSSKVQSKGSKAK HQPS Q LPPPEANAEAIHFL+SLRQEELL+L FSETLVMVSDTG
Sbjct: 1 MSSKVQSKGSKAKIHQPSTQGNLPPPEANAEAIHFLNSLRQEELLLLFFSETLVMVSDTG 60
Query: 221 EPQGELTIDVQRGKYKDEFGIMSYCPFVHASSRGYVDGVLCGTSLLGYLSWKLEIVEQHN 400
EPQGELTI+VQRGKYKD+ G+++Y PFVHASSRG++D LCG+SLL YLSWKLE+VEQ +
Sbjct: 61 EPQGELTIEVQRGKYKDQSGVITYFPFVHASSRGFMDKTLCGSSLLAYLSWKLEVVEQQS 120
Query: 401 QEFIKFHTLPMERKMRLLKQDDQLAVTRTVKEGEEVKTKVIVFPWHSIAGFISEAANLVL 580
QEFIKFH LPME+KM LLKQDDQLA+TR VKEGEEVKT+V FP S GF+S+AANLVL
Sbjct: 121 QEFIKFHILPMEQKMSLLKQDDQLAMTRMVKEGEEVKTEVTFFPRPSTEGFVSQAANLVL 180
Query: 581 LRVMGWRRTVPSNARFLALDTEGKLCYSTYQALGSQTIQVGRQQVEVFIVEQTVHSEEGI 760
LRVM WR TVPSNARFLALDTEGKLC STYQALGSQTIQVG QQVEVFIVEQTVHSE+GI
Sbjct: 181 LRVMAWRHTVPSNARFLALDTEGKLCCSTYQALGSQTIQVGHQQVEVFIVEQTVHSEQGI 240
Query: 761 PMSYQFYLLSDGHLAKRIQVGSPGCCTITKVPILREEDAIEPRPVFEKKPLMWEEDMELF 940
PMS QFYLLSDGHLAKRIQVGSPGCC ITKVP+LREED IEPRPVF+KKPL+WEED+EL+
Sbjct: 241 PMSCQFYLLSDGHLAKRIQVGSPGCCMITKVPVLREEDDIEPRPVFKKKPLVWEEDLELY 300
Query: 941 SKFMEPKGELGLSHNSYLRQHPEGHALISEF 1033
S+F++ K EL LSHNSYLRQHPE ALIS+F
Sbjct: 301 SRFLDRKEELRLSHNSYLRQHPEAQALISDF 331
>ref|XP_592223.3| PREDICTED: hypothetical protein [Bos taurus].
Length = 383
Score = 550 bits (1417), Expect = e-157
Identities = 272/331 (82%), Positives = 299/331 (90%)
Frame = +2
Query: 41 MSSKVQSKGSKAKDHQPSAQAGLPPPEANAEAIHFLDSLRQEELLMLLFSETLVMVSDTG 220
MSSKVQSKGSKAK HQPS Q LPPPEANAEAIHFL+SLRQEELL+L FSETLVMVSDTG
Sbjct: 1 MSSKVQSKGSKAKIHQPSTQGNLPPPEANAEAIHFLNSLRQEELLLLFFSETLVMVSDTG 60
Query: 221 EPQGELTIDVQRGKYKDEFGIMSYCPFVHASSRGYVDGVLCGTSLLGYLSWKLEIVEQHN 400
EPQGELTI+VQRGKYKD+ G+++Y PFVHASSRG++D LCG+SLL YLSWKLE+VEQ +
Sbjct: 61 EPQGELTIEVQRGKYKDQSGVITYFPFVHASSRGFMDKTLCGSSLLAYLSWKLEVVEQQS 120
Query: 401 QEFIKFHTLPMERKMRLLKQDDQLAVTRTVKEGEEVKTKVIVFPWHSIAGFISEAANLVL 580
QEFIKFH LPME+KM LLKQDDQLA+TR VKEGEEVKT+V FP S GF+S+AANLVL
Sbjct: 121 QEFIKFHILPMEQKMSLLKQDDQLAMTRMVKEGEEVKTEVTFFPRPSTEGFVSQAANLVL 180
Query: 581 LRVMGWRRTVPSNARFLALDTEGKLCYSTYQALGSQTIQVGRQQVEVFIVEQTVHSEEGI 760
LRVM WR TVPSNARFLALDTEGKLC STYQALGSQTIQVG QQVEVFIVEQTVHSE+GI
Sbjct: 181 LRVMAWRHTVPSNARFLALDTEGKLCCSTYQALGSQTIQVGHQQVEVFIVEQTVHSEQGI 240
Query: 761 PMSYQFYLLSDGHLAKRIQVGSPGCCTITKVPILREEDAIEPRPVFEKKPLMWEEDMELF 940
PMS QFYLLSDGHLAKRIQVGSPGCC ITKVP+LREED IEPRPVF+KKPL+WEED+EL+
Sbjct: 241 PMSCQFYLLSDGHLAKRIQVGSPGCCMITKVPVLREEDDIEPRPVFKKKPLVWEEDLELY 300
Query: 941 SKFMEPKGELGLSHNSYLRQHPEGHALISEF 1033
S+F++ K EL LSHNSYLRQHPE ALIS+F
Sbjct: 301 SRFLDRKEELRLSHNSYLRQHPEAQALISDF 331
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,961,768
Number of extensions: 1104541
Number of successful extensions: 4640
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4631
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,273,310
Effective search space: 3439867710
Effective search space used: 3439867710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009183
(1033 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853029.1| PREDICTED: hypothetical protein XP_847936 [Cani... 328 4e-90
>ref|XP_853029.1| PREDICTED: hypothetical protein XP_847936 [Canis familiaris].
Length = 230
Score = 328 bits (842), Expect = 4e-90
Identities = 161/214 (75%), Positives = 183/214 (85%)
Frame = +2
Query: 41 MSSKVQSKGSKAKDHQPSAQAGLPPPEANAEAIHFLDSLRQEELLMLLFSETLVMVSDTG 220
MSSK+QS G +AKDHQP AQ L PEANAEAIHFL +L+QEEL ML+FSETL MVSDTG
Sbjct: 1 MSSKLQSTGHRAKDHQPPAQGSLAAPEANAEAIHFLSNLQQEELQMLMFSETLAMVSDTG 60
Query: 221 EPQGELTIDVQRGKYKDEFGIMSYCPFVHASSRGYVDGVLCGTSLLGYLSWKLEIVEQHN 400
EP+GELTI+VQRGKYKDE G+MS C VHA SRG++D +LCG SLLGYLSWKL I+EQH+
Sbjct: 61 EPEGELTIEVQRGKYKDELGMMSSCVLVHAFSRGFMDRMLCGNSLLGYLSWKLHIMEQHS 120
Query: 401 QEFIKFHTLPMERKMRLLKQDDQLAVTRTVKEGEEVKTKVIVFPWHSIAGFISEAANLVL 580
QEFIKFH LPME KM L+KQDDQL +TR+VKEGEE+KT+V FP S GFIS+AANLVL
Sbjct: 121 QEFIKFHILPMEHKMSLVKQDDQLTMTRSVKEGEEMKTEVTFFPGSSTVGFISQAANLVL 180
Query: 581 LRVMGWRRTVPSNARFLALDTEGKLCYSTYQALG 682
LRVM WR+TVP+NARFLALDTEGKLCYSTY +G
Sbjct: 181 LRVMAWRQTVPNNARFLALDTEGKLCYSTYALMG 214
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,643,402
Number of extensions: 1139404
Number of successful extensions: 4825
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4804
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 240
Effective length of database: 15,407,560
Effective search space: 3697814400
Effective search space used: 3697814400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009183
(1033 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177149.1| hypothetical protein LOC100155612 [Sus scrof... 651 0.0
>ref|NP_001177149.1| hypothetical protein LOC100155612 [Sus scrofa].
Length = 398
Score = 651 bits (1680), Expect = 0.0
Identities = 324/331 (97%), Positives = 327/331 (98%)
Frame = +2
Query: 41 MSSKVQSKGSKAKDHQPSAQAGLPPPEANAEAIHFLDSLRQEELLMLLFSETLVMVSDTG 220
MSSKVQSKGSKAKDHQPSAQAGLPPPEANAEAIHFLDSL+QEELLMLLFSETLVMVSDTG
Sbjct: 1 MSSKVQSKGSKAKDHQPSAQAGLPPPEANAEAIHFLDSLQQEELLMLLFSETLVMVSDTG 60
Query: 221 EPQGELTIDVQRGKYKDEFGIMSYCPFVHASSRGYVDGVLCGTSLLGYLSWKLEIVEQHN 400
EPQGELTIDVQRGKYKDEFGIMSYCPFVHASSRGYVDGVLCGTSLLGYLSWKLEIVEQHN
Sbjct: 61 EPQGELTIDVQRGKYKDEFGIMSYCPFVHASSRGYVDGVLCGTSLLGYLSWKLEIVEQHN 120
Query: 401 QEFIKFHTLPMERKMRLLKQDDQLAVTRTVKEGEEVKTKVIVFPWHSIAGFISEAANLVL 580
QEFIKFHTLPMERKMRLLKQDDQLAVTRTVKEGEEVKTKVIVFPWHSIAGFISEAANLVL
Sbjct: 121 QEFIKFHTLPMERKMRLLKQDDQLAVTRTVKEGEEVKTKVIVFPWHSIAGFISEAANLVL 180
Query: 581 LRVMGWRRTVPSNARFLALDTEGKLCYSTYQALGSQTIQVGRQQVEVFIVEQTVHSEEGI 760
LRVMGWRRTVPSNARFLALDTEGKLCYSTYQALGSQTIQVGRQQVEVFIVEQTVHSEEGI
Sbjct: 181 LRVMGWRRTVPSNARFLALDTEGKLCYSTYQALGSQTIQVGRQQVEVFIVEQTVHSEEGI 240
Query: 761 PMSYQFYLLSDGHLAKRIQVGSPGCCTITKVPILREEDAIEPRPVFEKKPLMWEEDMELF 940
PMSYQFYLLSDGHLAKRIQVGSPGCCTITKVPILREEDAIEPRPVFEKKPLMWEEDMELF
Sbjct: 241 PMSYQFYLLSDGHLAKRIQVGSPGCCTITKVPILREEDAIEPRPVFEKKPLMWEEDMELF 300
Query: 941 SKFMEPKGELGLSHNSYLRQHPEGHALISEF 1033
SKFM+ K EL LSHNSYLRQHPE HALIS+F
Sbjct: 301 SKFMDRKEELRLSHNSYLRQHPEAHALISDF 331
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,163,061
Number of extensions: 712063
Number of successful extensions: 2884
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2879
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 244
Effective length of database: 8,854,232
Effective search space: 2160432608
Effective search space used: 2160432608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009183
(1033 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028517.1| hypothetical protein LOC241112 [Mus musculus]. 415 e-116
>ref|NP_001028517.1| hypothetical protein LOC241112 [Mus musculus].
Length = 501
Score = 415 bits (1066), Expect = e-116
Identities = 197/289 (68%), Positives = 243/289 (84%)
Frame = +2
Query: 167 ELLMLLFSETLVMVSDTGEPQGELTIDVQRGKYKDEFGIMSYCPFVHASSRGYVDGVLCG 346
E ++L F ETL ++SDTGEPQGELTI+VQRGKYKD+ GI+++C VHASSRG++D LCG
Sbjct: 11 EDMLLFFPETLAILSDTGEPQGELTIEVQRGKYKDDIGILTHCLLVHASSRGFLDKSLCG 70
Query: 347 TSLLGYLSWKLEIVEQHNQEFIKFHTLPMERKMRLLKQDDQLAVTRTVKEGEEVKTKVIV 526
+SLLGYL+ LE++EQH+QEFIKF LPMERKM +LKQD Q VTR+VKEGEE KT V V
Sbjct: 71 SSLLGYLNNNLELMEQHSQEFIKFPVLPMERKMSVLKQDGQFVVTRSVKEGEETKTGVSV 130
Query: 527 FPWHSIAGFISEAANLVLLRVMGWRRTVPSNARFLALDTEGKLCYSTYQALGSQTIQVGR 706
FP+ + GF+S AAN+VLLRVM W+++VPS ARFLALD+EGKLC+ TY++LG QTIQVG
Sbjct: 131 FPYKTFKGFVSSAANVVLLRVMAWQQSVPSGARFLALDSEGKLCHCTYKSLGFQTIQVGN 190
Query: 707 QQVEVFIVEQTVHSEEGIPMSYQFYLLSDGHLAKRIQVGSPGCCTITKVPILREEDAIEP 886
QQ ++FIVEQT+HSEEGIP S Q+YLL DGHLAKR+QVGSPGCC ITK+P++REED IE
Sbjct: 191 QQAKMFIVEQTIHSEEGIPFSCQYYLLPDGHLAKRVQVGSPGCCIITKMPLIREEDVIES 250
Query: 887 RPVFEKKPLMWEEDMELFSKFMEPKGELGLSHNSYLRQHPEGHALISEF 1033
P F+KKPL+W ED+EL+SKF++ K +L LSH SYLR HPE AL+S+F
Sbjct: 251 PPTFDKKPLVWGEDLELYSKFLDRKEQLRLSHASYLRHHPEAQALVSDF 299
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,692,704
Number of extensions: 929754
Number of successful extensions: 3405
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3392
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 242
Effective length of database: 12,553,887
Effective search space: 3038040654
Effective search space used: 3038040654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009183
(1033 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_940961.1| hypothetical protein LOC375307 [Homo sapiens]. 522 e-148
>ref|NP_940961.1| hypothetical protein LOC375307 [Homo sapiens].
Length = 387
Score = 522 bits (1345), Expect = e-148
Identities = 261/331 (78%), Positives = 287/331 (86%)
Frame = +2
Query: 41 MSSKVQSKGSKAKDHQPSAQAGLPPPEANAEAIHFLDSLRQEELLMLLFSETLVMVSDTG 220
MSSKV S GS+AKDHQPS LP PEANAEAI FL SL +EEL ML FSETL MVSDTG
Sbjct: 1 MSSKVYSTGSRAKDHQPSGPECLPLPEANAEAIDFLSSLHKEELQMLFFSETLAMVSDTG 60
Query: 221 EPQGELTIDVQRGKYKDEFGIMSYCPFVHASSRGYVDGVLCGTSLLGYLSWKLEIVEQHN 400
EPQGELTI+VQRGKY+++ G+++YC FVHASSRG++D +LCG SLLGYLS KLE++EQH+
Sbjct: 61 EPQGELTIEVQRGKYQEKLGMLTYCLFVHASSRGFLDKMLCGNSLLGYLSEKLELMEQHS 120
Query: 401 QEFIKFHTLPMERKMRLLKQDDQLAVTRTVKEGEEVKTKVIVFPWHSIAGFISEAANLVL 580
Q+FIKF LPMERKM LLKQDDQLAVTR++KEGEEVKT V FPW SI GFISEAANLVL
Sbjct: 121 QDFIKFLILPMERKMSLLKQDDQLAVTRSIKEGEEVKTGVTSFPWSSIKGFISEAANLVL 180
Query: 581 LRVMGWRRTVPSNARFLALDTEGKLCYSTYQALGSQTIQVGRQQVEVFIVEQTVHSEEGI 760
LRVM WRR VPSNARFL LDTEGKLCY TYQ LG QTIQV QQ EVFIVEQTVH+EEGI
Sbjct: 181 LRVMAWRRMVPSNARFLTLDTEGKLCYLTYQNLGFQTIQVDHQQAEVFIVEQTVHAEEGI 240
Query: 761 PMSYQFYLLSDGHLAKRIQVGSPGCCTITKVPILREEDAIEPRPVFEKKPLMWEEDMELF 940
PMS Q+YLLSDGHLAKRIQVGSPGCC ITK+PILREED IEPRPVFEKKPL+WEEDMEL+
Sbjct: 241 PMSCQYYLLSDGHLAKRIQVGSPGCCIITKMPILREEDEIEPRPVFEKKPLVWEEDMELY 300
Query: 941 SKFMEPKGELGLSHNSYLRQHPEGHALISEF 1033
SKF++ K EL L H SYLRQHPE HALIS+F
Sbjct: 301 SKFLDRKEELRLGHASYLRQHPEAHALISDF 331
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,868,049
Number of extensions: 1112243
Number of successful extensions: 4359
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4350
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,901,872
Effective search space: 3591351152
Effective search space used: 3591351152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009183
(1033 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 392 e-106
gb|GL892871.2| Sus scrofa unplaced genomic scaffold ChrUScaf756 268 6e-69
>Sscrofa_Chr15
|| Length = 157681621
Score = 392 bits (198), Expect = e-106
Identities = 201/202 (99%)
Strand = Plus / Minus
Query: 159 ggcaggaggagctgctgatgctgctcttctcggagaccctggtcatggtgtcagacacag 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133467369 ggcaggaggagctgctgatgctgctcttctcggagaccctggtcatggtgtcagacacag 133467310
Query: 219 gggagcctcagggagagctgaccattgatgtgcagagagggaaatacaaggatgaatttg 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133467309 gggagcctcagggagagctgaccattgatgtgcagagagggaaatacaaggatgaatttg 133467250
Query: 279 gtatcatgtcctactgccccttcgtgcacgcctccagccgcggctacgtggacggagtcc 338
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 133467249 gtatcatgtcctactgccccttcgtgcacgcctccagccgcggctacgtggatggagtcc 133467190
Query: 339 tctgcggaacctcgcttctggg 360
||||||||||||||||||||||
Sbjct: 133467189 tctgcggaacctcgcttctggg 133467168
Score = 337 bits (170), Expect = 7e-90
Identities = 170/170 (100%)
Strand = Plus / Minus
Query: 501 aggaagtgaagactaaagtgatcgtgttcccctggcactccattgcgggcttcatctccg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133465559 aggaagtgaagactaaagtgatcgtgttcccctggcactccattgcgggcttcatctccg 133465500
Query: 561 aggctgccaacctagtgctgctgagggtgatgggctggcggcggacagtgcccagcaacg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133465499 aggctgccaacctagtgctgctgagggtgatgggctggcggcggacagtgcccagcaacg 133465440
Query: 621 cccgtttcctggccttggacaccgagggcaaactctgctattccacttat 670
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133465439 cccgtttcctggccttggacaccgagggcaaactctgctattccacttat 133465390
Score = 192 bits (97), Expect = 3e-46
Identities = 100/101 (99%)
Strand = Plus / Minus
Query: 59 tccaaaggctccaaagccaaggaccaccagccttccgcccaagcgggtctgccaccccct 118
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133467827 tccataggctccaaagccaaggaccaccagccttccgcccaagcgggtctgccaccccct 133467768
Query: 119 gaggccaatgcggaagccatccacttccttgattccctccg 159
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 133467767 gaggccaatgcggaagccatccacttccttgattccctccg 133467727
Score = 190 bits (96), Expect = 1e-45
Identities = 122/128 (95%), Gaps = 2/128 (1%)
Strand = Plus / Minus
Query: 671 caagccctgggctcgcagaccatccaggtgggccgg-cagcaggtggaagtattcatt-g 728
||||||||| ||||||||||||||||| |||| ||| |||||||||| |||||||||| |
Sbjct: 133464136 caagccctgagctcgcagaccatccagttggggcgggcagcaggtggtagtattcatttg 133464077
Query: 729 tggagcagactgtacactcagaggagggcatccccatgtcctaccagttttacctgctct 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133464076 tggagcagactgtacactcagaggagggcatccccatgtcctaccagttttacctgctct 133464017
Query: 789 ctgatggg 796
||||||||
Sbjct: 133464016 ctgatggg 133464009
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 414 agttccacaccctccccatggaacggaagatgaggttgctgaagcaggatgatcagctgg 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133465835 agttccacaccctccccatggaacggaagatgaggttgctgaagcaggatgatcagctgg 133465776
Query: 474 ccgtgaccagaactgtcaaggagggtgagg 503
||||||||||||||||||||||||||||||
Sbjct: 133465775 ccgtgaccagaactgtcaaggagggtgagg 133465746
Score = 159 bits (80), Expect = 4e-36
Identities = 83/84 (98%)
Strand = Plus / Minus
Query: 871 agacgctattgagcctcgcccagtgtttgagaagaagcccctgatgtgggaagaggacat 930
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 133462755 agacgctattgagcctcgcccagtgtttgagaagaagcccctgatgtgggaggaggacat 133462696
Query: 931 ggagctcttctcaaagttcatgga 954
||||||||||||||||||||||||
Sbjct: 133462695 ggagctcttctcaaagttcatgga 133462672
Score = 155 bits (78), Expect = 6e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 795 ggcacctggccaagaggatccaggtgggctccccagggtgctgcaccatcaccaaggtgc 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133463166 ggcacctggccaagaggatccaggtgggctccccagggtgctgcaccatcaccaaggtgc 133463107
Query: 855 ccatcttgagggaagaag 872
||||||||||||||||||
Sbjct: 133463106 ccatcttgagggaagaag 133463089
Score = 131 bits (66), Expect = 8e-28
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 1 atggagacagctggctacaaacccagaagcaacaggcagcatgtcctctaaagttcaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133468069 atggagacagctggctacaaacccagaagcaacaggcagcatgtcctctaaagttcaatc 133468010
Query: 61 caaagg 66
||||||
Sbjct: 133468009 caaagg 133468004
Score = 113 bits (57), Expect = 2e-22
Identities = 57/57 (100%)
Strand = Plus / Minus
Query: 359 ggctacctttcctggaaactggagatcgtggaacaacataaccaggagttcatcaag 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133466905 ggctacctttcctggaaactggagatcgtggaacaacataaccaggagttcatcaag 133466849
Score = 105 bits (53), Expect = 5e-20
Identities = 62/65 (95%)
Strand = Plus / Minus
Query: 965 gagctcggtctcagccacaacagctatctgcggcagcacccggaaggccacgcgctcatc 1024
|||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 133462425 gagctccgtctcagccacaacagctatctgcggcagcacccggaggcccacgcgctcatc 133462366
Query: 1025 tccga 1029
|||||
Sbjct: 133462365 tccga 133462361
>gb|GL892871.2| Sus scrofa unplaced genomic scaffold ChrUScaf756
Length = 56517
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 159 ggcaggaggagctgctgatgctgctcttctcggagaccctggtcatggtgtcagacacag 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28035 ggcaggaggagctgctgatgctgctcttctcggagaccctggtcatggtgtcagacacag 28094
Query: 219 gggagcctcagggagagctgaccattgatgtgcagagagggaaatacaaggatgaatttg 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28095 gggagcctcagggagagctgaccattgatgtgcagagagggaaatacaaggatgaatttg 28154
Query: 279 gtatcatgtcctact 293
|||||||||||||||
Sbjct: 28155 gtatcatgtcctact 28169
Score = 242 bits (122), Expect = 3e-61
Identities = 125/126 (99%)
Strand = Plus / Plus
Query: 501 aggaagtgaagactaaagtgatcgtgttcccctggcactccattgcgggcttcatctccg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29964 aggaagtgaagactaaagtgatcgtgttcccctggcactccattgcgggcttcatctccg 30023
Query: 561 aggctgccaacctagtgctgctgagggtgatgggctggcggcggacagtgcccagcaacg 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 30024 aggctgccaacctagtgctgctgagggtgatgggctggcggcggacagtgcccagcaatg 30083
Query: 621 cccgtt 626
||||||
Sbjct: 30084 cccgtt 30089
Score = 234 bits (118), Expect = 8e-59
Identities = 124/126 (98%)
Strand = Plus / Plus
Query: 671 caagccctgggctcgcagaccatccaggtgggccggcagcaggtggaagtattcattgtg 730
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 31535 caagccctgggctcgcagaccatccaggtgggccggcagcaggtggaagtgttcagtgtg 31594
Query: 731 gagcagactgtacactcagaggagggcatccccatgtcctaccagttttacctgctctct 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31595 gagcagactgtacactcagaggagggcatccccatgtcctaccagttttacctgctctct 31654
Query: 791 gatggg 796
||||||
Sbjct: 31655 gatggg 31660
Score = 163 bits (82), Expect = 2e-37
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 414 agttccacaccctccccatggaacggaagatgaggttgctgaagcaggatgatcagctgg 473
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 29546 agttccacacccttcccatggaacggaagatgaagttgctgaagcaggatgatcagctgg 29605
Query: 474 ccgtgaccagaactgtcaaggagggtgagg 503
||||||||||||||||||||||||||||||
Sbjct: 29606 ccgtgaccagaactgtcaaggagggtgagg 29635
Score = 155 bits (78), Expect = 6e-35
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 795 ggcacctggccaagaggatccaggtgggctccccagggtgctgcaccatcaccaaggtgc 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32508 ggcacctggccaagaggatccaggtgggctccccagggtgctgcaccatcaccaaggtgc 32567
Query: 855 ccatcttgagggaagaag 872
||||||||||||||||||
Sbjct: 32568 ccatcttgagggaagaag 32585
Score = 131 bits (66), Expect = 8e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 atggagacagctggctacaaacccagaagcaacaggcagcatgtcctctaaagttcaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27205 atggagacagctggctacaaacccagaagcaacaggcagcatgtcctctaaagttcaatc 27264
Query: 61 caaagg 66
||||||
Sbjct: 27265 caaagg 27270
Score = 105 bits (53), Expect = 5e-20
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 359 ggctacctttcctggaaactggagatcgtggaacaacataaccaggagttcatcaag 415
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 28514 ggctacctttcctggaaactggagatcgtggaacaacataatcaggagttcatcaag 28570
Score = 77.8 bits (39), Expect = 1e-11
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 59 tccaaaggctccaaagccaaggaccaccagccttccgcccaag 101
|||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 27479 tccataggctccaaagccaaggaccaccagccttccgcccaag 27521
Score = 71.9 bits (36), Expect = 7e-10
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 124 caatgcggaagccatccacttccttgattccctccg 159
||||||||||||||||||||||||||||||||||||
Sbjct: 27622 caatgcggaagccatccacttccttgattccctccg 27657
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,522,512
Number of extensions: 186
Number of successful extensions: 186
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 19
Length of query: 1033
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1012
Effective length of database: 2,808,413,156
Effective search space: 2842114113872
Effective search space used: 2842114113872
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)