Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009187
(1046 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069060.1| MANSC domain-containing protein 1 [Bos tauru... 310 9e-87
>ref|NP_001069060.1| MANSC domain-containing protein 1 [Bos taurus].
Length = 413
Score = 310 bits (795), Expect(2) = 9e-87
Identities = 157/227 (69%), Positives = 173/227 (76%)
Frame = +1
Query: 172 MLFMGGWSWTYTFIIICSLTLQLSASQTCPTESLEDVVIDIQSSLSRGIRGNEPIHMLTQ 351
M F GGWS TYTF++IC LTL+LS SQ C TESLEDVVIDIQ SLS+GIRGNEPIH LT
Sbjct: 1 MFFWGGWSLTYTFVMICFLTLRLSTSQNCLTESLEDVVIDIQLSLSKGIRGNEPIHTLTP 60
Query: 352 EDCINSCCLTKNISGDRACNLMIFDTRKTTRQPNCYLFFCPSEEACPLKPAKGLRSYRII 531
+DCINSCC TKNISGD+ACNLMIFDT+K + PNCYLFFCPSEEACPLKPAKGL SYRII
Sbjct: 61 QDCINSCCSTKNISGDKACNLMIFDTQKKFKLPNCYLFFCPSEEACPLKPAKGLMSYRII 120
Query: 532 RDFPSLRTTGLPSQTVAQEDGRFQGGSSHRLXXXXXXRTGYSKPTVFWGDSFSQKLGSSG 711
R FPSL T LP+ VAQE+ F GGSSH + T S+PTV W DSFSQ GSS
Sbjct: 121 RGFPSLARTDLPNPGVAQENSIFPGGSSHAITPTHQPPTHDSEPTVLWRDSFSQTSGSSD 180
Query: 712 HVEKLLKIELASPQLPVYKDEGHSQKSPSSSEPRGAHLLAER*QCFP 852
H+EKLLKI+L SP YK+EGHSQ S SSS P A+LL E FP
Sbjct: 181 HLEKLLKIDLESPPSSDYKEEGHSQTSQSSSGPAIANLLPENVTAFP 227
Score = 29.3 bits (64), Expect(2) = 9e-87
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3
Query: 837 VTMFPTTVAEASLHTLWTTPQ 899
VT FP+T+A +SLHT+ TP+
Sbjct: 223 VTAFPSTMAVSSLHTVLATPK 243
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,358,316
Number of extensions: 1256898
Number of successful extensions: 4675
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4669
Number of HSP's successfully gapped: 2
Length of query: 348
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,273,310
Effective search space: 3496960950
Effective search space used: 3496960950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009187
(1046 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853974.1| PREDICTED: similar to MANSC domain containing 1... 303 2e-82
>ref|XP_853974.1| PREDICTED: similar to MANSC domain containing 1 [Canis familiaris].
Length = 456
Score = 303 bits (775), Expect = 2e-82
Identities = 150/228 (65%), Positives = 174/228 (76%), Gaps = 1/228 (0%)
Frame = +1
Query: 172 MLFMGGWSWTYTFIIICSLTLQLSASQTCPTESLEDVVIDIQSSLSRGIRGNEPIHMLTQ 351
M F WS TYTF+IIC LTL+LS+SQ CPT+SLEDVVIDIQSSLS+GIRGNEPI LTQ
Sbjct: 1 MFFREEWSLTYTFVIICFLTLRLSSSQNCPTKSLEDVVIDIQSSLSKGIRGNEPIRTLTQ 60
Query: 352 EDCINSCCLTKNISGDRACNLMIFDTRKTTRQPNCYLFFCPSEEACPLKPAKGLRSYRII 531
EDCINSCC TKNI+GD+ACNLMIFDTRKT RQPNCYLFFCPSEEACPLKPAKGL +YRI+
Sbjct: 61 EDCINSCCSTKNITGDKACNLMIFDTRKTARQPNCYLFFCPSEEACPLKPAKGLMTYRIL 120
Query: 532 RDFPSLRTTGLPSQTVAQEDGRFQGGSSHRLXXXXXXRTGYSKPT-VFWGDSFSQKLGSS 708
R+FP++ T PS + +ED G SS R+ TGYSKP FW D+FSQKLGSS
Sbjct: 121 REFPTVARTNSPSPELTREDSLIHGQSSRRIPPTTPAVTGYSKPADSFWRDAFSQKLGSS 180
Query: 709 GHVEKLLKIELASPQLPVYKDEGHSQKSPSSSEPRGAHLLAER*QCFP 852
H+EKL+KI AS PVYK++GH Q S S+S+ + AH L + P
Sbjct: 181 DHLEKLVKIGQASTLFPVYKEKGHPQSSQSASKQKIAHPLPKHVTTLP 228
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,238,349
Number of extensions: 1294422
Number of successful extensions: 4702
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4700
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 244
Effective length of database: 15,407,560
Effective search space: 3759444640
Effective search space used: 3759444640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009187
(1046 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,985,283
Number of extensions: 811537
Number of successful extensions: 3009
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3005
Number of HSP's successfully gapped: 0
Length of query: 348
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 248
Effective length of database: 8,854,232
Effective search space: 2195849536
Effective search space used: 2195849536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009187
(1046 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080621.1| MANSC domain-containing protein 1 precursor [Mu... 220 1e-57
>ref|NP_080621.1| MANSC domain-containing protein 1 precursor [Mus musculus].
Length = 414
Score = 220 bits (561), Expect = 1e-57
Identities = 122/220 (55%), Positives = 148/220 (67%), Gaps = 1/220 (0%)
Frame = +1
Query: 172 MLFMGGWSWTYTFIIICSLTLQLSASQTCPTESLEDVVIDIQSSLSRGIRGNEPIHMLTQ 351
MLF G S Y+ ++I LT + SA Q C T+SLEDVVIDIQSSLS+GIRGNEPIH+ TQ
Sbjct: 1 MLFRGT-SLAYSLLVISFLTPRSSAGQNCLTKSLEDVVIDIQSSLSKGIRGNEPIHLATQ 59
Query: 352 EDCINSCCLTKNISGDRACNLMIFDTRKTTRQPNCYLFFCPSEEACPLKPAKGLRSYRII 531
EDCI +CC TK+I+GD+ACNLMIFDTRKT RQPNCYLFFCPSE+ACPLKPAKGL +YR+I
Sbjct: 60 EDCIGACCSTKDIAGDKACNLMIFDTRKTDRQPNCYLFFCPSEDACPLKPAKGLVTYRLI 119
Query: 532 RDFPSLRTTGLPSQTVAQEDGRFQGGSSHRLXXXXXXRTGYSKPT-VFWGDSFSQKLGSS 708
RDFP L + Q + Q + SS GY KPT + W D S K +
Sbjct: 120 RDFP-LTSANSSLQQLTQGEFLLLDHSSPGATPGFRTPAGYPKPTGLSWSDRSSLKSTAP 178
Query: 709 GHVEKLLKIELASPQLPVYKDEGHSQKSPSSSEPRGAHLL 828
H+ K +K + S QLP +++ HSQ SE + AHLL
Sbjct: 179 LHLRKHIKADETSMQLP--EEKSHSQSLQLPSELKMAHLL 216
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,606,709
Number of extensions: 1062405
Number of successful extensions: 3651
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3648
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 246
Effective length of database: 12,553,887
Effective search space: 3088256202
Effective search space used: 3088256202
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009187
(1046 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060520.2| MANSC domain-containing protein 1 precursor [Ho... 290 6e-79
>ref|NP_060520.2| MANSC domain-containing protein 1 precursor [Homo sapiens].
Length = 431
Score = 290 bits (742), Expect(2) = 6e-79
Identities = 150/228 (65%), Positives = 168/228 (73%), Gaps = 1/228 (0%)
Frame = +1
Query: 172 MLFMGGWSWTYTFIIICSLTLQLSASQTCPTESLEDVVIDIQSSLSRGIRGNEPIHMLTQ 351
M F G S TYT +IIC LTL+LSASQ C +SLEDVVIDIQSSLS+GIRGNEP++ TQ
Sbjct: 1 MFFGGEGSLTYTLVIICFLTLRLSASQNCLKKSLEDVVIDIQSSLSKGIRGNEPVYTSTQ 60
Query: 352 EDCINSCCLTKNISGDRACNLMIFDTRKTTRQPNCYLFFCPSEEACPLKPAKGLRSYRII 531
EDCINSCC TKNISGD+ACNLMIFDTRKT RQPNCYLFFCP+EEACPLKPAKGL SYRII
Sbjct: 61 EDCINSCCSTKNISGDKACNLMIFDTRKTARQPNCYLFFCPNEEACPLKPAKGLMSYRII 120
Query: 532 RDFPSLRTTGLPSQTVAQEDGRFQGGSSHRLXXXXXXRTGYSKPT-VFWGDSFSQKLGSS 708
DFPSL T LPSQ + QED G S + T YSKPT + W D+ SQK GSS
Sbjct: 121 TDFPSL-TRNLPSQELPQEDSLLHGQFSQAVTPLAHHHTDYSKPTDISWRDTLSQKFGSS 179
Query: 709 GHVEKLLKIELASPQLPVYKDEGHSQKSPSSSEPRGAHLLAER*QCFP 852
H+EKL K++ AS QL YK++GHSQ S SS+ AHLL E P
Sbjct: 180 DHLEKLFKMDEASAQLLAYKEKGHSQSSQFSSDQEIAHLLPENVSALP 227
Score = 23.5 bits (49), Expect(2) = 6e-79
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 837 VTMFPTTVAEASLHTLWTTPQ 899
V+ P TVA AS HT TP+
Sbjct: 223 VSALPATVAVASPHTTSATPK 243
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,411,850
Number of extensions: 1272628
Number of successful extensions: 4298
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4295
Number of HSP's successfully gapped: 2
Length of query: 348
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,901,872
Effective search space: 3650958640
Effective search space used: 3650958640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009187
(1046 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
***** No hits found ******
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,529,108
Number of extensions: 276
Number of successful extensions: 276
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 0
Length of query: 1046
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1025
Effective length of database: 2,808,413,156
Effective search space: 2878623484900
Effective search space used: 2878623484900
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)