Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009189
(984 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029754.1| tryptophanyl-tRNA synthetase, mitochondrial ... 575 e-164
>ref|NP_001029754.1| tryptophanyl-tRNA synthetase, mitochondrial precursor [Bos taurus].
Length = 360
Score = 575 bits (1483), Expect = e-164
Identities = 286/322 (88%), Positives = 305/322 (94%)
Frame = +1
Query: 19 MALHSMRKARECWNLIRALHQGPEAALAPQKDAVKRVFSGIQPTGIPHLGNYLGAIESWV 198
MAL SMRKARECWN IRALHQGP+AA PQKDAVKR+FSGIQPTGIPHLGNYLGAIESWV
Sbjct: 1 MALRSMRKARECWNFIRALHQGPDAAPVPQKDAVKRIFSGIQPTGIPHLGNYLGAIESWV 60
Query: 199 KLQDEHGSVLYSIADLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH 378
+LQDEH SVLYSI DLHSITVPQDP +LRQSILDMTA LLACGINPEKSILFQQSQVSEH
Sbjct: 61 RLQDEHDSVLYSIVDLHSITVPQDPTILRQSILDMTAALLACGINPEKSILFQQSQVSEH 120
Query: 379 TQLSWILTCMIRLPRLQHLHQWKAKTDKEKQDGTMGLLTYPVLQAADILLYKSTHVPVGE 558
TQLSWILTCM+RLPRLQHLHQWKAKT KEK +GT+GLLTYPVLQAADILLYKSTHVPVGE
Sbjct: 121 TQLSWILTCMVRLPRLQHLHQWKAKTAKEKHNGTVGLLTYPVLQAADILLYKSTHVPVGE 180
Query: 559 DQVQHMELVQDLAQRFNKKYGEFFPVPKSILTSMKKVKSLRDPSAKMSKSDPDKLAAVRI 738
DQVQHMELVQDLAQ FNKKYGEFFPVPKSILTSMKKVKSLRDPSAKMSKSDPDKLA VRI
Sbjct: 181 DQVQHMELVQDLAQSFNKKYGEFFPVPKSILTSMKKVKSLRDPSAKMSKSDPDKLATVRI 240
Query: 739 TDSPEEIVQKFRKAVTDFTSEVTYDPARRGGVSNLVAIHAAVTGLPVEEVVRQSAGINTA 918
TDSPEEIVQKFRKA+TDFTSEVTY+PA RGGVSNLVAIHAAV GLPVEEVVR+SAG++TA
Sbjct: 241 TDSPEEIVQKFRKAMTDFTSEVTYEPASRGGVSNLVAIHAAVAGLPVEEVVRRSAGMDTA 300
Query: 919 G*QLVVAEAVIEKFAPLRVKLK 984
+LVVA+AVIEKFAP++ +++
Sbjct: 301 RYKLVVADAVIEKFAPIKSEIE 322
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,892,103
Number of extensions: 1288243
Number of successful extensions: 4542
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4523
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,273,310
Effective search space: 3211494750
Effective search space used: 3211494750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009189
(984 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540263.2| PREDICTED: similar to Tryptophanyl-tRNA synthet... 511 e-145
>ref|XP_540263.2| PREDICTED: similar to Tryptophanyl-tRNA synthetase, mitochondrial
precursor (Tryptophan--tRNA ligase) (TrpRS) ((Mt)TrpRS)
[Canis familiaris].
Length = 363
Score = 511 bits (1317), Expect = e-145
Identities = 255/292 (87%), Positives = 276/292 (94%)
Frame = +1
Query: 109 KDAVKRVFSGIQPTGIPHLGNYLGAIESWVKLQDEHGSVLYSIADLHSITVPQDPAVLRQ 288
KDAVKRVFSGIQPTGIPHLGNYLGAIE+WVKLQ+EHGSVLYSI DLHSITVPQDPAVLRQ
Sbjct: 34 KDAVKRVFSGIQPTGIPHLGNYLGAIETWVKLQEEHGSVLYSIVDLHSITVPQDPAVLRQ 93
Query: 289 SILDMTAVLLACGINPEKSILFQQSQVSEHTQLSWILTCMIRLPRLQHLHQWKAKTDKEK 468
SILDMTAVLLACGINPEKSILFQQSQVSEHTQLSWILTCM+RLPRLQHLHQWKAK +K
Sbjct: 94 SILDMTAVLLACGINPEKSILFQQSQVSEHTQLSWILTCMVRLPRLQHLHQWKAKIATQK 153
Query: 469 QDGTMGLLTYPVLQAADILLYKSTHVPVGEDQVQHMELVQDLAQRFNKKYGEFFPVPKSI 648
GT+GLLTYPVLQAADILLYKSTHVPVGEDQVQHMELVQDLAQ FNKKYGE FPVP+SI
Sbjct: 154 HGGTVGLLTYPVLQAADILLYKSTHVPVGEDQVQHMELVQDLAQGFNKKYGEVFPVPRSI 213
Query: 649 LTSMKKVKSLRDPSAKMSKSDPDKLAAVRITDSPEEIVQKFRKAVTDFTSEVTYDPARRG 828
LTSMKKVKSLRDPSAKMSKSDPDKLA VRITDSPEEIVQKFRKAVTDFTSEVTY+PARR
Sbjct: 214 LTSMKKVKSLRDPSAKMSKSDPDKLATVRITDSPEEIVQKFRKAVTDFTSEVTYEPARRA 273
Query: 829 GVSNLVAIHAAVTGLPVEEVVRQSAGINTAG*QLVVAEAVIEKFAPLRVKLK 984
GVSNLVAIHAAV G+PVEE ++ SAG++TA +L+VA+AVI+KFAP++ +++
Sbjct: 274 GVSNLVAIHAAVVGVPVEEALQHSAGLDTARYKLLVADAVIQKFAPIKSEIE 325
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,745,064
Number of extensions: 1325288
Number of successful extensions: 4933
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4917
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 225
Effective length of database: 15,440,896
Effective search space: 3474201600
Effective search space used: 3474201600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009189
(984 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125869.2| PREDICTED: tryptophanyl-tRNA synthetase, mit... 295 3e-80
>ref|XP_003125869.2| PREDICTED: tryptophanyl-tRNA synthetase, mitochondrial-like [Sus
scrofa].
Length = 191
Score = 295 bits (755), Expect = 3e-80
Identities = 144/144 (100%), Positives = 144/144 (100%)
Frame = +1
Query: 19 MALHSMRKARECWNLIRALHQGPEAALAPQKDAVKRVFSGIQPTGIPHLGNYLGAIESWV 198
MALHSMRKARECWNLIRALHQGPEAALAPQKDAVKRVFSGIQPTGIPHLGNYLGAIESWV
Sbjct: 1 MALHSMRKARECWNLIRALHQGPEAALAPQKDAVKRVFSGIQPTGIPHLGNYLGAIESWV 60
Query: 199 KLQDEHGSVLYSIADLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH 378
KLQDEHGSVLYSIADLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH
Sbjct: 61 KLQDEHGSVLYSIADLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH 120
Query: 379 TQLSWILTCMIRLPRLQHLHQWKA 450
TQLSWILTCMIRLPRLQHLHQWKA
Sbjct: 121 TQLSWILTCMIRLPRLQHLHQWKA 144
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,986,599
Number of extensions: 826924
Number of successful extensions: 2949
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2940
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 229
Effective length of database: 8,879,129
Effective search space: 2033320541
Effective search space used: 2033320541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009189
(984 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081738.2| tryptophanyl-tRNA synthetase, mitochondrial pre... 538 e-153
>ref|NP_081738.2| tryptophanyl-tRNA synthetase, mitochondrial precursor [Mus
musculus].
Length = 360
Score = 538 bits (1385), Expect = e-153
Identities = 267/322 (82%), Positives = 297/322 (92%)
Frame = +1
Query: 19 MALHSMRKARECWNLIRALHQGPEAALAPQKDAVKRVFSGIQPTGIPHLGNYLGAIESWV 198
MAL S+RKARECW IRALH+GP A LAPQK++ +RVFSGIQPTGI HLGNYLGAIESWV
Sbjct: 1 MALFSVRKARECWRFIRALHKGPAATLAPQKESGERVFSGIQPTGILHLGNYLGAIESWV 60
Query: 199 KLQDEHGSVLYSIADLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH 378
LQ+E+ +V+YSI DLHSITVPQDP VL+QSILDMTAVLLACGINPEKSILFQQS+VSEH
Sbjct: 61 NLQEEYDTVIYSIVDLHSITVPQDPTVLQQSILDMTAVLLACGINPEKSILFQQSKVSEH 120
Query: 379 TQLSWILTCMIRLPRLQHLHQWKAKTDKEKQDGTMGLLTYPVLQAADILLYKSTHVPVGE 558
TQLSWILTCM+RLPRLQHLHQWKAK K+K DGT+GLLTYPVLQAADIL YKSTHVPVGE
Sbjct: 121 TQLSWILTCMVRLPRLQHLHQWKAKAAKQKHDGTVGLLTYPVLQAADILCYKSTHVPVGE 180
Query: 559 DQVQHMELVQDLAQRFNKKYGEFFPVPKSILTSMKKVKSLRDPSAKMSKSDPDKLAAVRI 738
DQVQHMELVQDLA+ FN+KYGEFFP+PKSILTSMKKVKSLRDPS+KMSKSDPDKLA VRI
Sbjct: 181 DQVQHMELVQDLARSFNQKYGEFFPLPKSILTSMKKVKSLRDPSSKMSKSDPDKLATVRI 240
Query: 739 TDSPEEIVQKFRKAVTDFTSEVTYDPARRGGVSNLVAIHAAVTGLPVEEVVRQSAGINTA 918
TDSPEEIVQKFRKAVTDFTSEVTY+P R GVSN+VAIHAAV+GL VEEVVR SAG++TA
Sbjct: 241 TDSPEEIVQKFRKAVTDFTSEVTYEPDSRAGVSNMVAIHAAVSGLSVEEVVRSSAGLDTA 300
Query: 919 G*QLVVAEAVIEKFAPLRVKLK 984
+L+VA+AVIEKFAP+R +++
Sbjct: 301 RYKLLVADAVIEKFAPIRKEIE 322
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,357,299
Number of extensions: 1086396
Number of successful extensions: 3863
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3850
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 226
Effective length of database: 12,553,887
Effective search space: 2837178462
Effective search space used: 2837178462
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009189
(984 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056651.1| tryptophanyl-tRNA synthetase, mitochondrial iso... 553 e-158
Alignment gi|NP_957715.1| tryptophanyl-tRNA synthetase, mitochondrial iso... 379 e-105
>ref|NP_056651.1| tryptophanyl-tRNA synthetase, mitochondrial isoform 1 precursor
[Homo sapiens].
Length = 360
Score = 553 bits (1426), Expect = e-158
Identities = 280/322 (86%), Positives = 301/322 (93%)
Frame = +1
Query: 19 MALHSMRKARECWNLIRALHQGPEAALAPQKDAVKRVFSGIQPTGIPHLGNYLGAIESWV 198
MALHSMRKARE W+ IRALH+G AA A QKD+ KRVFSGIQPTGI HLGNYLGAIESWV
Sbjct: 1 MALHSMRKARERWSFIRALHKGSAAAPALQKDSKKRVFSGIQPTGILHLGNYLGAIESWV 60
Query: 199 KLQDEHGSVLYSIADLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH 378
+LQDE+ SVLYSI DLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH
Sbjct: 61 RLQDEYDSVLYSIVDLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH 120
Query: 379 TQLSWILTCMIRLPRLQHLHQWKAKTDKEKQDGTMGLLTYPVLQAADILLYKSTHVPVGE 558
TQLSWIL+CM+RLPRLQHLHQWKAKT K+K DGT+GLLTYPVLQAADILLYKSTHVPVGE
Sbjct: 121 TQLSWILSCMVRLPRLQHLHQWKAKTTKQKHDGTVGLLTYPVLQAADILLYKSTHVPVGE 180
Query: 559 DQVQHMELVQDLAQRFNKKYGEFFPVPKSILTSMKKVKSLRDPSAKMSKSDPDKLAAVRI 738
DQVQHMELVQDLAQ FNKKYGEFFPVP+SILTSMKKVKSLRDPSAKMSKSDPDKLA VRI
Sbjct: 181 DQVQHMELVQDLAQGFNKKYGEFFPVPESILTSMKKVKSLRDPSAKMSKSDPDKLATVRI 240
Query: 739 TDSPEEIVQKFRKAVTDFTSEVTYDPARRGGVSNLVAIHAAVTGLPVEEVVRQSAGINTA 918
TDSPEEIVQKFRKAVTDFTSEVTYDPA R GVSN+VA+HAAVTGL VEEVVR+SAG+NTA
Sbjct: 241 TDSPEEIVQKFRKAVTDFTSEVTYDPAGRAGVSNIVAVHAAVTGLSVEEVVRRSAGMNTA 300
Query: 919 G*QLVVAEAVIEKFAPLRVKLK 984
+L VA+AVIEKFAP++ +++
Sbjct: 301 RYKLAVADAVIEKFAPIKREIE 322
>ref|NP_957715.1| tryptophanyl-tRNA synthetase, mitochondrial isoform 2 precursor
[Homo sapiens].
Length = 220
Score = 379 bits (973), Expect = e-105
Identities = 188/212 (88%), Positives = 199/212 (93%)
Frame = +1
Query: 19 MALHSMRKARECWNLIRALHQGPEAALAPQKDAVKRVFSGIQPTGIPHLGNYLGAIESWV 198
MALHSMRKARE W+ IRALH+G AA A QKD+ KRVFSGIQPTGI HLGNYLGAIESWV
Sbjct: 1 MALHSMRKARERWSFIRALHKGSAAAPALQKDSKKRVFSGIQPTGILHLGNYLGAIESWV 60
Query: 199 KLQDEHGSVLYSIADLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH 378
+LQDE+ SVLYSI DLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH
Sbjct: 61 RLQDEYDSVLYSIVDLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH 120
Query: 379 TQLSWILTCMIRLPRLQHLHQWKAKTDKEKQDGTMGLLTYPVLQAADILLYKSTHVPVGE 558
TQLSWIL+CM+RLPRLQHLHQWKAKT K+K DGT+GLLTYPVLQAADILLYKSTHVPVGE
Sbjct: 121 TQLSWILSCMVRLPRLQHLHQWKAKTTKQKHDGTVGLLTYPVLQAADILLYKSTHVPVGE 180
Query: 559 DQVQHMELVQDLAQRFNKKYGEFFPVPKSILT 654
DQVQHMELVQDLAQ FNKKYGEFFPVP+SIL+
Sbjct: 181 DQVQHMELVQDLAQGFNKKYGEFFPVPESILS 212
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,994,340
Number of extensions: 1305092
Number of successful extensions: 4767
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4760
Number of HSP's successfully gapped: 2
Length of query: 328
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,901,872
Effective search space: 3352921200
Effective search space used: 3352921200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009189
(984 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 565 e-158
Sscrofa_ChrX 68 1e-08
Sscrofa_Chr12 58 1e-05
>Sscrofa_Chr04
|| Length = 143465943
Score = 565 bits (285), Expect = e-158
Identities = 322/333 (96%), Gaps = 1/333 (0%)
Strand = Plus / Minus
Query: 653 catcaatgaagaaggtaaaatccctgcgtgatccctctgccaagatgtcgaaatcagacc 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111923079 catcaatgaagaaggtaaaatccctgcgtgatccctctgccaagatgtcgaaatcagacc 111923020
Query: 713 cggataaactagctgctgtcagaataacagacagcccggaggagatcgtgcagaagttcc 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111923019 cggataaactagctgctgtcagaataacagacagcccggaggagatcgtgcagaagttcc 111922960
Query: 773 gcaaggctgtgacggacttcacctcggaggtcacctacgacccggccaggcgaggaggcg 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111922959 gcaaggctgtgacggacttcacctcggaggtcacctacgacccggccaggcgaggaggcg 111922900
Query: 833 tgtccaacttggtggccatccacgcggcagtgaccggactcccggtggaggaagtggtcc 892
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 111922899 tgtccaacttggtggccatccacgcggcagtgaccggactcccggtggaggaggtggtcc 111922840
Query: 893 gccaaagtgctggcatcaacaccgctggctaacaattggtggtggcggaagctgtgattg 952
||| ||||||||||||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct: 111922839 gccgaagtgctggcatcaacaccgctggctacaagctggtggtggcggaggctgtgattg 111922780
Query: 953 aaaaatttgc-cccattaagagtgaaattgaaa 984
| | |||||| || |||||||||||||||||||
Sbjct: 111922779 agagatttgcaccaattaagagtgaaattgaaa 111922747
Score = 515 bits (260), Expect = e-143
Identities = 263/264 (99%)
Strand = Plus / Plus
Query: 105 ccagaaagatgccgtgaagcgagtattctctggcattcagcctacaggaatcccccacct 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111820938 ccagaaagatgccgtgaagcgagtattctctggcattcagcctacaggaatcccccacct 111820997
Query: 165 gggcaattacctgggagccattgagagctgggtgaaattacaggatgagcatggctccgt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111820998 gggcaattacctgggagccattgagagctgggtgaaattacaggatgagcatggctccgt 111821057
Query: 225 gctttacagcatcgctgacctacactccatcactgtaccccaagacccagccgtcctccg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111821058 gctttacagcatcgctgacctacactccatcactgtaccccaagacccagccgtcctccg 111821117
Query: 285 acagagcatcttggacatgactgcggttcttcttgcctgtggcataaacccagagaagag 344
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 111821118 acagagcatcttggacatgactgcagttcttcttgcctgtggcataaacccagagaagag 111821177
Query: 345 catccttttccaacaatctcaggt 368
||||||||||||||||||||||||
Sbjct: 111821178 catccttttccaacaatctcaggt 111821201
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 534 gtccacacatgttcctgttggggaggatcaagtccagcacatggagctagttcaagatct 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111924709 gtccacacatgttcctgttggggaggatcaagtccagcacatggagctagttcaagatct 111924650
Query: 594 agcacaaaggtttaacaagaagtatggggagttcttcccagtgcccaagtccattctga 652
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111924649 agcacaaaggtttaacaagaagtatggggagttcttcccagtgcccaagtccattctga 111924591
Score = 214 bits (108), Expect = 7e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 gactccgcccctctcaagatggcgctgcactcaatgcggaaggcgcgtgagtgctggaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111777917 gactccgcccctctcaagatggcgctgcactcaatgcggaaggcgcgtgagtgctggaac 111777976
Query: 61 ctcatccgggcacttcatcaaggacccgaagctgctctcgctccccag 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111777977 ctcatccgggcacttcatcaaggacccgaagctgctctcgctccccag 111778024
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 446 aggcaaagactgataaggagaagcaggatggaaccatggggctgctcacgtacccagtgc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111862556 aggcaaagactgataaggagaagcaggatggaaccatggggctgctcacgtacccagtgc 111862615
Query: 506 tccaggcagctgacattctgctgtacaagt 535
||||||||||||||||||||||||||||||
Sbjct: 111862616 tccaggcagctgacattctgctgtacaagt 111862645
Score = 167 bits (84), Expect = 1e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 365 aggtgtctgaacacacgcaattaagttggatccttacctgcatgatcagactgccccgat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111857666 aggtgtctgaacacacgcaattaagttggatccttacctgcatgatcagactgccccgat 111857725
Query: 425 tacaacatttacaccagtggaagg 448
||||||||||||||||||||||||
Sbjct: 111857726 tacaacatttacaccagtggaagg 111857749
>Sscrofa_ChrX
|| Length = 144288218
Score = 67.9 bits (34), Expect = 1e-08
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 47 gtgagtgctggaacctcatccgggcacttcatcaaggacccgaagctgctctcgctcccc 106
||||||||||||||||||||| |||||||||| ||||| |||||||||| |||||||
Sbjct: 99010632 gtgagtgctggaacctcatccaagcacttcatcgaggacttgaagctgctcctgctcccc 99010573
Query: 107 ag 108
||
Sbjct: 99010572 ag 99010571
>Sscrofa_Chr12
|| Length = 63588571
Score = 58.0 bits (29), Expect = 1e-05
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 761 tgcagaagttccgcaaggctgtgacggacttcacctcggaggtcacctacgacccggcca 820
||||| ||| ||||||||||||||| | |||||||| ||||||||| ||| ||||||||
Sbjct: 16200075 tgcagtagtcccgcaaggctgtgacaggcttcaccttggaggtcacgtacagcccggcca 16200134
Query: 821 g 821
|
Sbjct: 16200135 g 16200135
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,572,291
Number of extensions: 127
Number of successful extensions: 127
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 8
Length of query: 984
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 963
Effective length of database: 2,808,413,156
Effective search space: 2704501869228
Effective search space used: 2704501869228
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)