Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009197
(952 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030556.1| cell cycle checkpoint control protein RAD9B ... 52 6e-07
>ref|NP_001030556.1| cell cycle checkpoint control protein RAD9B [Bos taurus].
Length = 442
Score = 52.4 bits (124), Expect = 6e-07
Identities = 38/170 (22%), Positives = 79/170 (46%), Gaps = 15/170 (8%)
Frame = +2
Query: 44 QGLLSFAESANLSLSVYFDAPGRPAIFAIEDTLLDGHFVLATLSEPDPHSQDLRS---SE 214
+G+L+F+E+ + ++++FD PG+P +I+D LL+ +F+LATL++ + L++ S+
Sbjct: 247 KGVLTFSEAIHAPIAIHFDFPGKPMALSIDDMLLEANFILATLADEPSRASSLQTLYLSQ 306
Query: 215 LQRPAPQLQAHS------TPHLDDFAADDID-SYMIAMETTVGSEASRALPSDSLSPGLQ 373
QR + + ++S T + ++ + ++ + + ET S + +
Sbjct: 307 KQRRSEPIHSNSKAGKNITSKVPEYISRKVEPKRLYSNETPTNISTLENCGSPLMKRANK 366
Query: 374 AL-----CXXXXXXXXXXXXXXXXXVPGTPPPKKFRSLFFGSILAPTHSP 508
+ VPG+P KKF +FFG+ + P
Sbjct: 367 DITEVPESDGNLSEVPESSVSDTEDVPGSPCLKKFSCMFFGAASSDQQEP 416
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,546,259
Number of extensions: 1374793
Number of successful extensions: 7551
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7475
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,306,398
Effective search space: 3075875570
Effective search space used: 3075875570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009197
(952 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540817.2| PREDICTED: similar to RAD9 homolog [Canis famil... 238 6e-63
>ref|XP_540817.2| PREDICTED: similar to RAD9 homolog [Canis familiaris].
Length = 503
Score = 238 bits (607), Expect = 6e-63
Identities = 125/170 (73%), Positives = 134/170 (78%)
Frame = +2
Query: 44 QGLLSFAESANLSLSVYFDAPGRPAIFAIEDTLLDGHFVLATLSEPDPHSQDLRSSELQR 223
+GLLSFAESANLSLSV+FDAPGRPAIFA++D+LLDGHFVLATLSE D HS + S EL R
Sbjct: 336 RGLLSFAESANLSLSVHFDAPGRPAIFAVKDSLLDGHFVLATLSESDLHSPAMCSPELHR 395
Query: 224 PAPQLQAHSTPHLDDFAADDIDSYMIAMETTVGSEASRALPSDSLSPGLQALCXXXXXXX 403
AP LQAHSTPHLDDFA+DDIDSYMIAMETT SE SRA+PS LSPGL+ C
Sbjct: 396 LAPPLQAHSTPHLDDFASDDIDSYMIAMETTADSEGSRAVPSIPLSPGLRPPCSPGPFSE 455
Query: 404 XXXXXXXXXXVPGTPPPKKFRSLFFGSILAPTHSPQGPSPVLAEDSEGEG 553
PGTPPPKKFRSLFFGSILAP HSP GPSPVLAEDSEGEG
Sbjct: 456 DHEAEPSTE--PGTPPPKKFRSLFFGSILAPVHSPPGPSPVLAEDSEGEG 503
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,253,467
Number of extensions: 1416975
Number of successful extensions: 7516
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7469
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 214
Effective length of database: 15,440,896
Effective search space: 3304351744
Effective search space used: 3304351744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009197
(952 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122511.1| PREDICTED: cell cycle checkpoint control pro... 300 1e-81
>ref|XP_003122511.1| PREDICTED: cell cycle checkpoint control protein RAD9A [Sus
scrofa].
Length = 392
Score = 300 bits (767), Expect = 1e-81
Identities = 152/170 (89%), Positives = 153/170 (90%)
Frame = +2
Query: 44 QGLLSFAESANLSLSVYFDAPGRPAIFAIEDTLLDGHFVLATLSEPDPHSQDLRSSELQR 223
+GLLSFAESANLSLSVYFDAPGRPAIFAIEDTLLDGHFVLATLSEPDPHSQDLRSSELQR
Sbjct: 223 RGLLSFAESANLSLSVYFDAPGRPAIFAIEDTLLDGHFVLATLSEPDPHSQDLRSSELQR 282
Query: 224 PAPQLQAHSTPHLDDFAADDIDSYMIAMETTVGSEASRALPSDSLSPGLQALCXXXXXXX 403
PAPQLQAHSTPHLDDFAADDIDSYMIAMETTVGSEASRALPSDSLSPGLQALC
Sbjct: 283 PAPQLQAHSTPHLDDFAADDIDSYMIAMETTVGSEASRALPSDSLSPGLQALCSPGPDSE 342
Query: 404 XXXXXXXXXXVPGTPPPKKFRSLFFGSILAPTHSPQGPSPVLAEDSEGEG 553
VPGTPPPKKFRSLFFGSILAPTHSPQGPSPVLAEDSEGEG
Sbjct: 343 EEEDDTEPSTVPGTPPPKKFRSLFFGSILAPTHSPQGPSPVLAEDSEGEG 392
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,934,566
Number of extensions: 897018
Number of successful extensions: 5004
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4954
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,879,129
Effective search space: 1935650122
Effective search space used: 1935650122
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009197
(952 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035367.1| cell cycle checkpoint control protein RAD9A [Mu... 209 3e-54
Alignment gi|NP_659161.2| cell cycle checkpoint control protein RAD9B [Mu... 57 2e-08
>ref|NP_035367.1| cell cycle checkpoint control protein RAD9A [Mus musculus].
Length = 389
Score = 209 bits (531), Expect = 3e-54
Identities = 111/170 (65%), Positives = 122/170 (71%)
Frame = +2
Query: 44 QGLLSFAESANLSLSVYFDAPGRPAIFAIEDTLLDGHFVLATLSEPDPHSQDLRSSELQR 223
+GLLSFAESANL L+++FD PGRP IF IED+LLD HFVLATL E D SQ S + +
Sbjct: 223 RGLLSFAESANLPLTIHFDVPGRPVIFTIEDSLLDAHFVLATLLEQDSCSQGPCSPKPHQ 282
Query: 224 PAPQLQAHSTPHLDDFAADDIDSYMIAMETTVGSEASRALPSDSLSPGLQALCXXXXXXX 403
P PQ QAHSTPHLDDF +DDID YMIAMETT G+E S A PS SL P A
Sbjct: 283 PVPQKQAHSTPHLDDFTSDDIDCYMIAMETTGGNEGSGAQPSTSLPPVSLA---SHDLAP 339
Query: 404 XXXXXXXXXXVPGTPPPKKFRSLFFGSILAPTHSPQGPSPVLAEDSEGEG 553
VPGTPPPKKFRSLFFGSILAP HSPQGP+PVLAEDS+GEG
Sbjct: 340 TSEEEAEPSTVPGTPPPKKFRSLFFGSILAPVHSPQGPNPVLAEDSDGEG 389
>ref|NP_659161.2| cell cycle checkpoint control protein RAD9B [Mus musculus].
Length = 403
Score = 57.4 bits (137), Expect = 2e-08
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 9/73 (12%)
Frame = +2
Query: 44 QGLLSFAESANLSLSVYFDAPGRPAIFAIEDTLLDGHFVLATL-------SEPD--PHSQ 196
+G+L+F+E + L++YFD PG+P + ++ED LL+ +F+LATL S P P SQ
Sbjct: 229 KGILTFSEVMHAPLAIYFDFPGKPVVLSVEDMLLEANFILATLVDYPSRTSSPQLLPLSQ 288
Query: 197 DLRSSELQRPAPQ 235
RS +Q AP+
Sbjct: 289 ARRSHPIQSSAPE 301
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,325,042
Number of extensions: 1112616
Number of successful extensions: 5494
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5460
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 216
Effective length of database: 12,583,923
Effective search space: 2718127368
Effective search space used: 2718127368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009197
(952 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230153.1| cell cycle checkpoint control protein RAD9A ... 239 4e-63
Alignment gi|NP_004575.1| cell cycle checkpoint control protein RAD9A iso... 239 4e-63
Alignment gi|NP_689655.3| cell cycle checkpoint control protein RAD9B [Ho... 52 1e-06
>ref|NP_001230153.1| cell cycle checkpoint control protein RAD9A isoform 2 [Homo
sapiens].
Length = 315
Score = 239 bits (609), Expect = 4e-63
Identities = 124/170 (72%), Positives = 134/170 (78%)
Frame = +2
Query: 44 QGLLSFAESANLSLSVYFDAPGRPAIFAIEDTLLDGHFVLATLSEPDPHSQDLRSSELQR 223
+GLLSFAESANL+LS++FDAPGRPAIF I+D+LLDGHFVLATLS+ D HSQDL S E +
Sbjct: 147 RGLLSFAESANLNLSIHFDAPGRPAIFTIKDSLLDGHFVLATLSDTDSHSQDLGSPERHQ 206
Query: 224 PAPQLQAHSTPHLDDFAADDIDSYMIAMETTVGSEASRALPSDSLSPGLQALCXXXXXXX 403
P PQLQAHSTPH DDFA DDIDSYMIAMETT+G+E SR LPS SLSPG Q
Sbjct: 207 PVPQLQAHSTPHPDDFANDDIDSYMIAMETTIGNEGSRVLPSISLSPGPQP-PKSPGPHS 265
Query: 404 XXXXXXXXXXVPGTPPPKKFRSLFFGSILAPTHSPQGPSPVLAEDSEGEG 553
VPGTPPPKKFRSLFFGSILAP SPQGPSPVLAEDSEGEG
Sbjct: 266 EEEDEAEPSTVPGTPPPKKFRSLFFGSILAPVRSPQGPSPVLAEDSEGEG 315
>ref|NP_004575.1| cell cycle checkpoint control protein RAD9A isoform 1 [Homo
sapiens].
Length = 391
Score = 239 bits (609), Expect = 4e-63
Identities = 124/170 (72%), Positives = 134/170 (78%)
Frame = +2
Query: 44 QGLLSFAESANLSLSVYFDAPGRPAIFAIEDTLLDGHFVLATLSEPDPHSQDLRSSELQR 223
+GLLSFAESANL+LS++FDAPGRPAIF I+D+LLDGHFVLATLS+ D HSQDL S E +
Sbjct: 223 RGLLSFAESANLNLSIHFDAPGRPAIFTIKDSLLDGHFVLATLSDTDSHSQDLGSPERHQ 282
Query: 224 PAPQLQAHSTPHLDDFAADDIDSYMIAMETTVGSEASRALPSDSLSPGLQALCXXXXXXX 403
P PQLQAHSTPH DDFA DDIDSYMIAMETT+G+E SR LPS SLSPG Q
Sbjct: 283 PVPQLQAHSTPHPDDFANDDIDSYMIAMETTIGNEGSRVLPSISLSPGPQP-PKSPGPHS 341
Query: 404 XXXXXXXXXXVPGTPPPKKFRSLFFGSILAPTHSPQGPSPVLAEDSEGEG 553
VPGTPPPKKFRSLFFGSILAP SPQGPSPVLAEDSEGEG
Sbjct: 342 EEEDEAEPSTVPGTPPPKKFRSLFFGSILAPVRSPQGPSPVLAEDSEGEG 391
>ref|NP_689655.3| cell cycle checkpoint control protein RAD9B [Homo sapiens].
Length = 429
Score = 51.6 bits (122), Expect = 1e-06
Identities = 20/55 (36%), Positives = 39/55 (70%)
Frame = +2
Query: 44 QGLLSFAESANLSLSVYFDAPGRPAIFAIEDTLLDGHFVLATLSEPDPHSQDLRS 208
+G+L+F+E+ + +S+YFD PG+P +I+D L++ +F+LATL++ + +S
Sbjct: 234 KGILTFSEATHAPISIYFDFPGKPLALSIDDMLVEANFILATLADEQSRASSPQS 288
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,245,553
Number of extensions: 1368260
Number of successful extensions: 7156
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7081
Number of HSP's successfully gapped: 3
Length of query: 317
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,934,836
Effective search space: 3210989740
Effective search space used: 3210989740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009197
(952 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 860 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 860 bits (434), Expect = 0.0
Identities = 479/494 (96%), Gaps = 2/494 (0%)
Strand = Plus / Minus
Query: 459 agttccgctcgctgttcttcggctccatcctggcccccacacactctccccagggcccca 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3842641 agttccgctcgctgttcttcggctccatcctggcccccacacactctccccagggcccca 3842582
Query: 519 gccctgtgctggctgaagatagtgagggtgaaggctgagccccgaagtccggcgttggga 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3842581 gccctgtgctggctgaagatagtgagggtgaaggctgagccccgaagtccggcgttggga 3842522
Query: 579 agactggaccagatgaagccccagccaccccctctcccagcgccagccgtgggtggggac 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3842521 agactggaccagatgaagccccagccaccccctctcccagcgccagccgtgggtggggac 3842462
Query: 639 ggctcttctccttggcaggtggtaaaggtgggccctgctggagctgagctggctggtcct 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3842461 ggctcttctccttggcaggtggtaaaggtgggccctgctggagctgagctggctggtcct 3842402
Query: 699 gctactgtcccgcgggcctttcctgggtatctgacccgcctgggtcctgtcatcttcctc 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3842401 gctactgtcccgcgggcctttcctgggtatctgacccgcctgggtcctgtcatcttcctc 3842342
Query: 759 cagcaccgcacttccccacgccctgcccatcatgtctgttccaggcttggtgctgagctg 818
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3842341 cagcaccgcac-tccccacgccctgccaatcatgtctgttccaggcttggtgctgagctg 3842283
Query: 819 ccacctgcaggagaggtccctaaccacctcatccacgccttgtggcccaggctgggggct 878
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 3842282 ccacctgcaggagaggtccctaaccacctcatccacg-cttgtggcccaggctggggcct 3842224
Query: 879 gccttcttcacacccacctccctaagnnnnnnnntcatattggggctgctggcctctgct 938
||||||| |||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 3842223 gccttctccacacccacctccctaagaaaaaaaatcatagtggggctgctggcctctgct 3842164
Query: 939 gatcaacccctgct 952
|||| |||||||||
Sbjct: 3842163 gatccacccctgct 3842150
Score = 424 bits (214), Expect = e-116
Identities = 214/214 (100%)
Strand = Plus / Minus
Query: 247 cagcacaccccacctggatgactttgccgcggacgacattgactcttatatgatcgccat 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3842944 cagcacaccccacctggatgactttgccgcggacgacattgactcttatatgatcgccat 3842885
Query: 307 ggagaccactgtgggcagtgaggcttcccgggccctgccctccgactccctttctcctgg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3842884 ggagaccactgtgggcagtgaggcttcccgggccctgccctccgactccctttctcctgg 3842825
Query: 367 cctccaagccctctgcagccctggccctgactcagaggaggaagaggacgacactgagcc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3842824 cctccaagccctctgcagccctggccctgactcagaggaggaagaggacgacactgagcc 3842765
Query: 427 cagcacagtgcctgggacacctccacccaagaag 460
||||||||||||||||||||||||||||||||||
Sbjct: 3842764 cagcacagtgcctgggacacctccacccaagaag 3842731
Score = 278 bits (140), Expect = 5e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 110 aggccagctatctttgccatcgaggacactctgctggatggccactttgttctggccacg 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3843820 aggccagctatctttgccatcgaggacactctgctggatggccactttgttctggccacg 3843761
Query: 170 ctctcggagccggacccgcactcccaggatctgcgttcctcagagctccagaggccagca 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3843760 ctctcggagccggacccgcactcccaggatctgcgttcctcagagctccagaggccagca 3843701
Query: 230 cctcagcttcaggctcacag 249
||||||||||||||||||||
Sbjct: 3843700 cctcagcttcaggctcacag 3843681
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 1 ctccttgcttcctccgcacctcacggccctgcctctcccttcccaggggctcctgagctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3844019 ctccttgcttcctccgcacctcacggccctgcctctcccttcccaggggctcctgagctt 3843960
Query: 61 cgcagagtcagcaaacttgtctcttagcgtttacttcgatgctcctggcagg 112
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3843959 cgcagagtcagcaaacttgtctcttagcgtttacttcgatgctcctggcagg 3843908
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,042,277
Number of extensions: 431
Number of successful extensions: 431
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 5
Length of query: 952
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 931
Effective length of database: 2,808,413,156
Effective search space: 2614632648236
Effective search space used: 2614632648236
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)