Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009210
(1051 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002684897.1| PREDICTED: Phosphatidylinositol-glycan biosy... 322 3e-88
>ref|XP_002684897.1| PREDICTED: Phosphatidylinositol-glycan biosynthesis class X
protein-like [Bos taurus].
Length = 401
Score = 322 bits (826), Expect = 3e-88
Identities = 166/217 (76%), Positives = 180/217 (82%), Gaps = 1/217 (0%)
Frame = +2
Query: 311 DAGIRATCSEIILKQEVLKDGFHRDLLIRVKFGEGI-EDLQTCRVLIRQYIPTGLFVDPY 487
+ GIRATCSEIIL+QEVLKDGFH L VKF I E + C + GLFVDPY
Sbjct: 188 EMGIRATCSEIILRQEVLKDGFHSLL---VKFMCSICEQNEECEL-------EGLFVDPY 237
Query: 488 ELASLREKNITEAVMVSENFNIEAPDYLSKESEVLIYARQDPQCTDCFQAFLPVHYRYHR 667
ELASLRE+NITEAVMV ENFNIEAP+YLSKESEVLIYARQD QC DCFQAFLPVHYRYHR
Sbjct: 238 ELASLRERNITEAVMVLENFNIEAPNYLSKESEVLIYARQDSQCIDCFQAFLPVHYRYHR 297
Query: 668 PHCNDEETFIVVNNPDLLMYCDQEFPVLKCWTQSEMTAPCALNSQDICQWDNIKYKSVYK 847
PH D ETFIVV+NPDLLMYCDQEFPVLKCW QSE+TAPC LNS+DICQW+N+KYKSVYK
Sbjct: 298 PHVKDGETFIVVHNPDLLMYCDQEFPVLKCWAQSEVTAPCTLNSKDICQWNNMKYKSVYK 357
Query: 848 NVTLLVPVGLTIHTSLVCSVTLLVYVLGSALIPGAWF 958
N+TL VPVGLTIHTSLVCSVTLL+ +L S LI A F
Sbjct: 358 NLTLQVPVGLTIHTSLVCSVTLLISILCSTLILVAVF 394
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,802,372
Number of extensions: 874889
Number of successful extensions: 2644
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2635
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,273,310
Effective search space: 3525507570
Effective search space used: 3525507570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009210
(1051 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535778.2| PREDICTED: similar to GPI-mannosyltransferase s... 367 e-101
>ref|XP_535778.2| PREDICTED: similar to GPI-mannosyltransferase subunit [Canis
familiaris].
Length = 572
Score = 367 bits (941), Expect = e-101
Identities = 174/214 (81%), Positives = 193/214 (90%)
Frame = +2
Query: 302 APTDAGIRATCSEIILKQEVLKDGFHRDLLIRVKFGEGIEDLQTCRVLIRQYIPTGLFVD 481
+P G +ATCSEIIL+QEVLKDGFHRDLLI+VKFGE IEDLQTCR+LI+QYIPTGL VD
Sbjct: 347 SPYKLGKKATCSEIILRQEVLKDGFHRDLLIKVKFGESIEDLQTCRLLIKQYIPTGLLVD 406
Query: 482 PYELASLREKNITEAVMVSENFNIEAPDYLSKESEVLIYARQDPQCTDCFQAFLPVHYRY 661
PYELASL+E NITEAVMVSE+FNIEAP+YLSKESEVLIYARQD QC DCFQAFLPVHYRY
Sbjct: 407 PYELASLQESNITEAVMVSEDFNIEAPNYLSKESEVLIYARQDSQCIDCFQAFLPVHYRY 466
Query: 662 HRPHCNDEETFIVVNNPDLLMYCDQEFPVLKCWTQSEMTAPCALNSQDICQWDNIKYKSV 841
HRPH D ETFIVVNNPDLLMYCDQE P+LKCW QS++ APC L ++DICQW+N+KYKSV
Sbjct: 467 HRPHSKDGETFIVVNNPDLLMYCDQELPILKCWAQSQVAAPCTLKNKDICQWNNMKYKSV 526
Query: 842 YKNVTLLVPVGLTIHTSLVCSVTLLVYVLGSALI 943
+KNVTL VPVGLTIHTSLVCSVTLL+ +L S LI
Sbjct: 527 FKNVTLQVPVGLTIHTSLVCSVTLLITILCSTLI 560
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,228,383
Number of extensions: 885329
Number of successful extensions: 2738
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2737
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 246
Effective length of database: 15,407,560
Effective search space: 3790259760
Effective search space used: 3790259760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009210
(1051 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358817.1| PREDICTED: phosphatidylinositol-glycan biosy... 504 e-143
>ref|XP_003358817.1| PREDICTED: phosphatidylinositol-glycan biosynthesis class X
protein-like [Sus scrofa].
Length = 313
Score = 504 bits (1298), Expect(2) = e-143
Identities = 260/319 (81%), Positives = 262/319 (82%)
Frame = +2
Query: 2 IACREAGTFAGLGSREPSKSGTAGVRGGSLPFRSLTL*QRALGAEQGLCRFSRPHLVPEH 181
IACREAGTFAGLGSREPSKSGTAGVR
Sbjct: 27 IACREAGTFAGLGSREPSKSGTAGVR---------------------------------- 52
Query: 182 SSQVRVSGXXXXXXXXXXXXXWLFLWEVAGLTSADPVFSTAPTDAGIRATCSEIILKQEV 361
VSG WLFLWEVAGLTSADPVFSTAPTDAGIRATCSEIILKQEV
Sbjct: 53 -----VSGVLATAAVAGRAVAWLFLWEVAGLTSADPVFSTAPTDAGIRATCSEIILKQEV 107
Query: 362 LKDGFHRDLLIRVKFGEGIEDLQTCRVLIRQYIPTGLFVDPYELASLREKNITEAVMVSE 541
LKDGFHRDLLIRVKFGEGIEDLQTCRVLIRQYIPTGLFVDPYELASLREKNITEAVMVSE
Sbjct: 108 LKDGFHRDLLIRVKFGEGIEDLQTCRVLIRQYIPTGLFVDPYELASLREKNITEAVMVSE 167
Query: 542 NFNIEAPDYLSKESEVLIYARQDPQCTDCFQAFLPVHYRYHRPHCNDEETFIVVNNPDLL 721
NFNIEAPDYLSKESEVLIYARQDPQCTDCFQAFLPVHYRYHRPHCNDEETFIVVNNPDLL
Sbjct: 168 NFNIEAPDYLSKESEVLIYARQDPQCTDCFQAFLPVHYRYHRPHCNDEETFIVVNNPDLL 227
Query: 722 MYCDQEFPVLKCWTQSEMTAPCALNSQDICQWDNIKYKSVYKNVTLLVPVGLTIHTSLVC 901
MYCDQEFPVLKCWTQSEMTAPCALNSQDICQW+N+KYKSVYKNVTLLVPVGLTIHTSLVC
Sbjct: 228 MYCDQEFPVLKCWTQSEMTAPCALNSQDICQWNNMKYKSVYKNVTLLVPVGLTIHTSLVC 287
Query: 902 SVTLLVYVLGSALIPGAWF 958
SVTLLV VL SALI A F
Sbjct: 288 SVTLLVTVLCSALILVAVF 306
Score = 23.9 bits (50), Expect(2) = e-143
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +3
Query: 945 LVPGFTYGHFSL 980
LV FTYGHFSL
Sbjct: 302 LVAVFTYGHFSL 313
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,139,588
Number of extensions: 580338
Number of successful extensions: 1775
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1774
Number of HSP's successfully gapped: 3
Length of query: 350
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 250
Effective length of database: 8,854,232
Effective search space: 2213558000
Effective search space used: 2213558000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009210
(1051 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001104495.1| phosphatidylinositol-glycan biosynthesis cla... 369 e-102
Alignment gi|NP_077784.2| phosphatidylinositol-glycan biosynthesis class ... 363 e-101
>ref|NP_001104495.1| phosphatidylinositol-glycan biosynthesis class X protein isoform 2
precursor [Mus musculus].
Length = 252
Score = 369 bits (946), Expect = e-102
Identities = 177/235 (75%), Positives = 202/235 (85%), Gaps = 2/235 (0%)
Frame = +2
Query: 245 WLFLWE--VAGLTSADPVFSTAPTDAGIRATCSEIILKQEVLKDGFHRDLLIRVKFGEGI 418
WL LW + G +AD FS AP AG+RATCSEIIL+QE LKDGFHRDLLI+VKFGE I
Sbjct: 8 WLLLWAAWLVGRLAAD--FSDAPFSAGVRATCSEIILRQEFLKDGFHRDLLIKVKFGESI 65
Query: 419 EDLQTCRVLIRQYIPTGLFVDPYELASLREKNITEAVMVSENFNIEAPDYLSKESEVLIY 598
EDLQTCR+LI+ YIP GLFVDPYELASLRE+N+TEAVM+SE+FNIEAP+YLS ES VLIY
Sbjct: 66 EDLQTCRLLIKHYIPPGLFVDPYELASLRERNLTEAVMLSESFNIEAPNYLSNESAVLIY 125
Query: 599 ARQDPQCTDCFQAFLPVHYRYHRPHCNDEETFIVVNNPDLLMYCDQEFPVLKCWTQSEMT 778
ARQD QC DCFQAFLPVHYRYHRPH D +T IVVNNPDLLMYCDQEFP+LKCW QSE+
Sbjct: 126 ARQDAQCIDCFQAFLPVHYRYHRPHKKDGDTLIVVNNPDLLMYCDQEFPILKCWAQSEVA 185
Query: 779 APCALNSQDICQWDNIKYKSVYKNVTLLVPVGLTIHTSLVCSVTLLVYVLGSALI 943
APCAL S++ICQW +++YKS+ KN+T+ VPVGLTIHTSLVCSVTLL+ +L S LI
Sbjct: 186 APCALKSEEICQWKSMQYKSILKNLTVQVPVGLTIHTSLVCSVTLLITILCSTLI 240
>ref|NP_077784.2| phosphatidylinositol-glycan biosynthesis class X protein isoform 1
precursor [Mus musculus].
Length = 254
Score = 363 bits (933), Expect = e-101
Identities = 177/237 (74%), Positives = 202/237 (85%), Gaps = 4/237 (1%)
Frame = +2
Query: 245 WLFLWE--VAGLTSADPVFSTAPTDAG--IRATCSEIILKQEVLKDGFHRDLLIRVKFGE 412
WL LW + G +AD FS AP AG +RATCSEIIL+QE LKDGFHRDLLI+VKFGE
Sbjct: 8 WLLLWAAWLVGRLAAD--FSDAPFSAGKGVRATCSEIILRQEFLKDGFHRDLLIKVKFGE 65
Query: 413 GIEDLQTCRVLIRQYIPTGLFVDPYELASLREKNITEAVMVSENFNIEAPDYLSKESEVL 592
IEDLQTCR+LI+ YIP GLFVDPYELASLRE+N+TEAVM+SE+FNIEAP+YLS ES VL
Sbjct: 66 SIEDLQTCRLLIKHYIPPGLFVDPYELASLRERNLTEAVMLSESFNIEAPNYLSNESAVL 125
Query: 593 IYARQDPQCTDCFQAFLPVHYRYHRPHCNDEETFIVVNNPDLLMYCDQEFPVLKCWTQSE 772
IYARQD QC DCFQAFLPVHYRYHRPH D +T IVVNNPDLLMYCDQEFP+LKCW QSE
Sbjct: 126 IYARQDAQCIDCFQAFLPVHYRYHRPHKKDGDTLIVVNNPDLLMYCDQEFPILKCWAQSE 185
Query: 773 MTAPCALNSQDICQWDNIKYKSVYKNVTLLVPVGLTIHTSLVCSVTLLVYVLGSALI 943
+ APCAL S++ICQW +++YKS+ KN+T+ VPVGLTIHTSLVCSVTLL+ +L S LI
Sbjct: 186 VAAPCALKSEEICQWKSMQYKSILKNLTVQVPVGLTIHTSLVCSVTLLITILCSTLI 242
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,336,170
Number of extensions: 752350
Number of successful extensions: 2248
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2248
Number of HSP's successfully gapped: 2
Length of query: 350
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 248
Effective length of database: 12,553,887
Effective search space: 3113363976
Effective search space used: 3113363976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009210
(1051 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060331.3| phosphatidylinositol-glycan biosynthesis class ... 365 e-101
Alignment gi|NP_001159776.1| phosphatidylinositol-glycan biosynthesis cla... 354 9e-98
>ref|NP_060331.3| phosphatidylinositol-glycan biosynthesis class X protein isoform 2
precursor [Homo sapiens].
Length = 258
Score = 365 bits (937), Expect = e-101
Identities = 179/239 (74%), Positives = 200/239 (83%), Gaps = 1/239 (0%)
Frame = +2
Query: 245 WLFLWEVAGLTSADPV-FSTAPTDAGIRATCSEIILKQEVLKDGFHRDLLIRVKFGEGIE 421
WL L GLT F+ A +DAGIRA CSEIIL+QEVLKDGFHRDLLI+VKFGE IE
Sbjct: 13 WLLLGAATGLTRGPAAAFTAARSDAGIRAMCSEIILRQEVLKDGFHRDLLIKVKFGESIE 72
Query: 422 DLQTCRVLIRQYIPTGLFVDPYELASLREKNITEAVMVSENFNIEAPDYLSKESEVLIYA 601
DL TCR+LI+Q IP GL+VDPYELASLRE+NITEAVMVSENF+IEAP+YLSKESEVLIYA
Sbjct: 73 DLHTCRLLIKQDIPAGLYVDPYELASLRERNITEAVMVSENFDIEAPNYLSKESEVLIYA 132
Query: 602 RQDPQCTDCFQAFLPVHYRYHRPHCNDEETFIVVNNPDLLMYCDQEFPVLKCWTQSEMTA 781
R+D QC DCFQAFLPVH RYHRPH D E IVVNNPDLLM+CDQEFP+LKCW SE+ A
Sbjct: 133 RRDSQCIDCFQAFLPVHCRYHRPHSEDGEASIVVNNPDLLMFCDQEFPILKCWAHSEVAA 192
Query: 782 PCALNSQDICQWDNIKYKSVYKNVTLLVPVGLTIHTSLVCSVTLLVYVLGSALIPGAWF 958
PCAL ++DICQW+ +KYKSVYKNV L VPVGLT+HTSLVCSVTLL+ +L S LI A F
Sbjct: 193 PCALENEDICQWNKMKYKSVYKNVILQVPVGLTVHTSLVCSVTLLITILCSTLILVAVF 251
>ref|NP_001159776.1| phosphatidylinositol-glycan biosynthesis class X protein isoform 1
precursor [Homo sapiens].
Length = 276
Score = 354 bits (908), Expect = 9e-98
Identities = 179/257 (69%), Positives = 200/257 (77%), Gaps = 19/257 (7%)
Frame = +2
Query: 245 WLFLWEVAGLTSADPV-FSTAPTDAGIRATCSEIILKQEVLKDGFHRDLLIRVKFGEGIE 421
WL L GLT F+ A +DAGIRA CSEIIL+QEVLKDGFHRDLLI+VKFGE IE
Sbjct: 13 WLLLGAATGLTRGPAAAFTAARSDAGIRAMCSEIILRQEVLKDGFHRDLLIKVKFGESIE 72
Query: 422 DLQTCRVLIRQYIPTGLFVDPYELASLREKNITEAVMVSENFNIEAPDYLSKESEVLIYA 601
DL TCR+LI+Q IP GL+VDPYELASLRE+NITEAVMVSENF+IEAP+YLSKESEVLIYA
Sbjct: 73 DLHTCRLLIKQDIPAGLYVDPYELASLRERNITEAVMVSENFDIEAPNYLSKESEVLIYA 132
Query: 602 RQDPQCTDCFQAFLPVHYRYHRPHCNDEETFIVVNNPDLLMYCDQ--------------- 736
R+D QC DCFQAFLPVH RYHRPH D E IVVNNPDLLM+CDQ
Sbjct: 133 RRDSQCIDCFQAFLPVHCRYHRPHSEDGEASIVVNNPDLLMFCDQAGSRRMIRFRFDSFD 192
Query: 737 ---EFPVLKCWTQSEMTAPCALNSQDICQWDNIKYKSVYKNVTLLVPVGLTIHTSLVCSV 907
EFP+LKCW SE+ APCAL ++DICQW+ +KYKSVYKNV L VPVGLT+HTSLVCSV
Sbjct: 193 KTIEFPILKCWAHSEVAAPCALENEDICQWNKMKYKSVYKNVILQVPVGLTVHTSLVCSV 252
Query: 908 TLLVYVLGSALIPGAWF 958
TLL+ +L S LI A F
Sbjct: 253 TLLITILCSTLILVAVF 269
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,697,332
Number of extensions: 878508
Number of successful extensions: 2570
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2569
Number of HSP's successfully gapped: 2
Length of query: 350
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,901,872
Effective search space: 3680762384
Effective search space used: 3680762384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009210
(1051 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 628 e-177
>Sscrofa_Chr13
|| Length = 218635234
Score = 628 bits (317), Expect = e-177
Identities = 317/317 (100%)
Strand = Plus / Minus
Query: 2 attgcctgccgcgaggccggaactttcgcgggcctaggctcccgggagccgagcaagagc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143068740 attgcctgccgcgaggccggaactttcgcgggcctaggctcccgggagccgagcaagagc 143068681
Query: 62 gggacagcaggcgtgcgcggagggagtcttccgttcaggtcgctaactctgtgacagcgc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143068680 gggacagcaggcgtgcgcggagggagtcttccgttcaggtcgctaactctgtgacagcgc 143068621
Query: 122 gctctaggagcggagcaaggcttgtgtaggttctcacgaccgcatttggtccccgagcat 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143068620 gctctaggagcggagcaaggcttgtgtaggttctcacgaccgcatttggtccccgagcat 143068561
Query: 182 tcttcccaggtgcgcgtttccggcgtcctggctaccgcggctgtagccggccgggccgtg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143068560 tcttcccaggtgcgcgtttccggcgtcctggctaccgcggctgtagccggccgggccgtg 143068501
Query: 242 gcctggctcttcctctgggaggtggctgggctcacctctgcagacccagtcttcagcacg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143068500 gcctggctcttcctctgggaggtggctgggctcacctctgcagacccagtcttcagcacg 143068441
Query: 302 gcccccaccgacgctgg 318
|||||||||||||||||
Sbjct: 143068440 gcccccaccgacgctgg 143068424
Score = 428 bits (216), Expect = e-117
Identities = 216/216 (100%)
Strand = Plus / Minus
Query: 522 aggcagtgatggtttcagaaaattttaatatagaggctcctgactatttgtccaaggaat 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143045527 aggcagtgatggtttcagaaaattttaatatagaggctcctgactatttgtccaaggaat 143045468
Query: 582 ctgaagttctcatttatgccagacaggatcctcagtgcactgattgtttccaagcttttt 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143045467 ctgaagttctcatttatgccagacaggatcctcagtgcactgattgtttccaagcttttt 143045408
Query: 642 tgcctgtgcactatcgctatcatcggccacattgtaatgatgaagaaaccttcattgtgg 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143045407 tgcctgtgcactatcgctatcatcggccacattgtaatgatgaagaaaccttcattgtgg 143045348
Query: 702 tcaataaccctgatttattgatgtattgtgaccaag 737
||||||||||||||||||||||||||||||||||||
Sbjct: 143045347 tcaataaccctgatttattgatgtattgtgaccaag 143045312
Score = 291 bits (147), Expect = 4e-76
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 378 acagagacctgttaataagagtgaaatttggagaaggcattgaggacttacagacctgcc 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143052327 acagagacctgttaataagagtgaaatttggagaaggcattgaggacttacagacctgcc 143052268
Query: 438 gagtcttaattagacaatacatcccgacaggactttttgtggatccatatgagttggctt 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143052267 gagtcttaattagacaatacatcccgacaggactttttgtggatccatatgagttggctt 143052208
Query: 498 cattacgagagaaaaacataacagagg 524
|||||||||||||||||||||||||||
Sbjct: 143052207 cattacgagagaaaaacataacagagg 143052181
Score = 252 bits (127), Expect = 3e-64
Identities = 175/187 (93%), Gaps = 3/187 (1%)
Strand = Plus / Minus
Query: 839 gtatataagaatgtgactctactggttccagtgggactgaccatacatacctctttagta 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143038189 gtatataagaatgtgactctactggttccagtgggactgaccatacatacctctttagta 143038130
Query: 899 tgttctgtgacactgctcgtttacgtcttggggtctgctttgatccctggtgcctggttt 958
||||||||||||||||||||| ||||||| | ||||||||||| ||| ||| ||| |||
Sbjct: 143038129 tgttctgtgacactgctcgttaccgtcttgtgttctgctttgat-ccttgtggctgtttt 143038071
Query: 959 cacctatggccatttttccctataagttttatggtgggtaaatgctttcaataaacctta 1018
||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||
Sbjct: 143038070 cacatatggccatttttccctataagttttat-gtggttaaatgctttcaataaacc-ta 143038013
Query: 1019 aataaga 1025
|||||||
Sbjct: 143038012 aataaga 143038006
Score = 194 bits (98), Expect = 7e-47
Identities = 104/106 (98%)
Strand = Plus / Minus
Query: 736 agagtttccagttttgaaatgctggactcagtcagaaatgacagctccttgtgctttgaa 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143042411 agagtttccagttttgaaatgctggactcagtcagaaatgacagctccttgtgctttgaa 143042352
Query: 796 cagtcaggatatctgccaatgggacaatattaaatataagtcagta 841
|||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 143042351 cagtcaggatatctgccaatggaacaatatgaaatataagtcagta 143042306
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 317 ggcataagagccacttgttctgaaattattttgaagcaagaagttttgaaagatggtttc 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143062096 ggcataagagccacttgttctgaaattattttgaagcaagaagttttgaaagatggtttc 143062037
Query: 377 cacag 381
|||||
Sbjct: 143062036 cacag 143062032
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,525,868
Number of extensions: 237
Number of successful extensions: 237
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 6
Length of query: 1051
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1030
Effective length of database: 2,808,413,156
Effective search space: 2892665550680
Effective search space used: 2892665550680
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)