Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009228
(1013 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069598.1| coenzyme Q-binding protein COQ10 homolog A, ... 397 e-111
Alignment gi|NP_001069122.1| coenzyme Q-binding protein COQ10 homolog B, ... 288 7e-78
>ref|NP_001069598.1| coenzyme Q-binding protein COQ10 homolog A, mitochondrial [Bos
taurus].
Length = 243
Score = 397 bits (1021), Expect = e-111
Identities = 195/208 (93%), Positives = 200/208 (96%)
Frame = +1
Query: 313 RPPGPMRFLMSCSLFLPRAVQVLAAEAGLSPRRSFMGFAAPFTNKRKAYSERRIMGYSMQ 492
RP GPMRF +SCS FLPRA QVLA E+GL P RSFMGFAAPFTNKRKAYSERRIMGYSMQ
Sbjct: 35 RPLGPMRFPISCSFFLPRAPQVLATESGLPPSRSFMGFAAPFTNKRKAYSERRIMGYSMQ 94
Query: 493 EMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMVK 672
EMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPV+ERYTSAVSMVKPHMVK
Sbjct: 95 EMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVVERYTSAVSMVKPHMVK 154
Query: 673 AVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNV 852
AVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLAT+FFDEVVK+NV
Sbjct: 155 AVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATIFFDEVVKKNV 214
Query: 853 AAFERRAATKFGPETAVPRELMFHEGHQ 936
AAFERRAATKFGPETAVPRELMFHE HQ
Sbjct: 215 AAFERRAATKFGPETAVPRELMFHEVHQ 242
>ref|NP_001069122.1| coenzyme Q-binding protein COQ10 homolog B, mitochondrial [Bos
taurus].
Length = 244
Score = 288 bits (736), Expect = 7e-78
Identities = 136/212 (64%), Positives = 165/212 (77%), Gaps = 4/212 (1%)
Frame = +1
Query: 316 PPGPMRFLMSCSLFLPRAVQVLAAEAGLSPR----RSFMGFAAPFTNKRKAYSERRIMGY 483
P + +L SC + + R L + P+ R+F AAP NKRK YSERRI+GY
Sbjct: 36 PARNVSYLASCGILMSRT---LPLHTSVFPKKIHARTFFRIAAPLINKRKEYSERRIIGY 92
Query: 484 SMQEMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPH 663
SMQEMY+VV+ +++Y+ FVPWCKKS ++S R G+ K +LE+GFPPV+ERYTS V++VKPH
Sbjct: 93 SMQEMYDVVSGMEDYKHFVPWCKKSDIISRRSGYCKTRLEIGFPPVLERYTSVVTLVKPH 152
Query: 664 MVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVK 843
+VKA CTDGKLFNHLET+WRFSPG+P YPRTCT+DFSISFEFRSLLHSQLAT+FFDEVVK
Sbjct: 153 LVKASCTDGKLFNHLETVWRFSPGLPGYPRTCTLDFSISFEFRSLLHSQLATLFFDEVVK 212
Query: 844 QNVAAFERRAATKFGPETAVPRELMFHEGHQT 939
Q V AFERRA +GPET +PRELM HE H T
Sbjct: 213 QMVTAFERRACKLYGPETNIPRELMLHEVHHT 244
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,632,608
Number of extensions: 963020
Number of successful extensions: 2621
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2616
Number of HSP's successfully gapped: 2
Length of query: 337
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,273,310
Effective search space: 3339954540
Effective search space used: 3339954540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009228
(1013 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531633.2| PREDICTED: similar to CG9410-PA, isoform A [Can... 398 e-111
Alignment gi|XP_536015.2| PREDICTED: similar to CG9410-PA, isoform A [Can... 292 3e-79
>ref|XP_531633.2| PREDICTED: similar to CG9410-PA, isoform A [Canis familiaris].
Length = 244
Score = 398 bits (1023), Expect = e-111
Identities = 193/208 (92%), Positives = 199/208 (95%)
Frame = +1
Query: 316 PPGPMRFLMSCSLFLPRAVQVLAAEAGLSPRRSFMGFAAPFTNKRKAYSERRIMGYSMQE 495
PP PMRFL CSLFLPRA +VL AE GL P RSFMGFAAPFTNKRKAYSERRIMGYSMQE
Sbjct: 37 PPRPMRFLTPCSLFLPRAARVLVAEVGLPPSRSFMGFAAPFTNKRKAYSERRIMGYSMQE 96
Query: 496 MYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMVKA 675
M+EVV+NVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPP++ERYTSAVSMVKPHMVKA
Sbjct: 97 MFEVVSNVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPIVERYTSAVSMVKPHMVKA 156
Query: 676 VCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNVA 855
VCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNVA
Sbjct: 157 VCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNVA 216
Query: 856 AFERRAATKFGPETAVPRELMFHEGHQT 939
AFERRAATKFGPETA+PRELMFHE HQT
Sbjct: 217 AFERRAATKFGPETAIPRELMFHEVHQT 244
>ref|XP_536015.2| PREDICTED: similar to CG9410-PA, isoform A [Canis familiaris].
Length = 351
Score = 292 bits (748), Expect = 3e-79
Identities = 139/212 (65%), Positives = 167/212 (78%), Gaps = 4/212 (1%)
Frame = +1
Query: 316 PPGPMRFLMSCSLFLPRAVQVLAAEAGLSPR----RSFMGFAAPFTNKRKAYSERRIMGY 483
P +R+L SC + + R L + P+ R+F AAP NKRK YSERRI+GY
Sbjct: 143 PARHVRYLASCGILMTRT---LPLHTSILPKEIYARTFFKIAAPLINKRKEYSERRIIGY 199
Query: 484 SMQEMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPH 663
SMQEMY+VV+ +++Y+ FVPWCKKS V+S R G+ K +LE+GFPPV+ERYTS V++VKPH
Sbjct: 200 SMQEMYDVVSGMEDYKHFVPWCKKSDVISKRTGYCKTRLEIGFPPVLERYTSVVTLVKPH 259
Query: 664 MVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVK 843
+VKA CTDGKLFNHLET+WRFSPG+P YPRTCT+DFSISFEFRSLLHSQLAT+FFDEVVK
Sbjct: 260 LVKASCTDGKLFNHLETVWRFSPGLPGYPRTCTLDFSISFEFRSLLHSQLATLFFDEVVK 319
Query: 844 QNVAAFERRAATKFGPETAVPRELMFHEGHQT 939
Q VAAFERRA +GPET +PRELM HE H T
Sbjct: 320 QMVAAFERRACKLYGPETNIPRELMLHEVHHT 351
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,896,718
Number of extensions: 926651
Number of successful extensions: 2964
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2939
Number of HSP's successfully gapped: 2
Length of query: 337
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 234
Effective length of database: 15,440,896
Effective search space: 3613169664
Effective search space used: 3613169664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009228
(1013 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126315.1| PREDICTED: coenzyme Q-binding protein COQ10 ... 427 e-120
Alignment gi|XP_003355520.1| PREDICTED: coenzyme Q-binding protein COQ10 ... 424 e-119
Alignment gi|XP_003126316.1| PREDICTED: coenzyme Q-binding protein COQ10 ... 313 1e-85
Alignment gi|XP_001928809.1| PREDICTED: coenzyme Q-binding protein COQ10 ... 296 2e-80
Alignment gi|XP_003133609.1| PREDICTED: coenzyme Q-binding protein COQ10 ... 256 1e-68
>ref|XP_003126315.1| PREDICTED: coenzyme Q-binding protein COQ10 homolog A,
mitochondrial isoform 1 [Sus scrofa].
Length = 243
Score = 427 bits (1097), Expect = e-120
Identities = 212/221 (95%), Positives = 212/221 (95%)
Frame = +1
Query: 277 FSVXXXXXXXXLRPPGPMRFLMSCSLFLPRAVQVLAAEAGLSPRRSFMGFAAPFTNKRKA 456
FSV LRPPGPMRFLMSCSLFLPRAVQVLAAEAGLSPRRSFMGFAAPFTNKRKA
Sbjct: 23 FSVRPAPPPGPLRPPGPMRFLMSCSLFLPRAVQVLAAEAGLSPRRSFMGFAAPFTNKRKA 82
Query: 457 YSERRIMGYSMQEMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYT 636
YSERRIMGYSMQEMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYT
Sbjct: 83 YSERRIMGYSMQEMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYT 142
Query: 637 SAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLA 816
SAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLA
Sbjct: 143 SAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLA 202
Query: 817 TMFFDEVVKQNVAAFERRAATKFGPETAVPRELMFHEGHQT 939
TMFFDEVVKQNVAAFERRAATKFGPETAVPRELMFHE HQT
Sbjct: 203 TMFFDEVVKQNVAAFERRAATKFGPETAVPRELMFHEVHQT 243
>ref|XP_003355520.1| PREDICTED: coenzyme Q-binding protein COQ10 homolog A,
mitochondrial-like [Sus scrofa].
Length = 243
Score = 424 bits (1090), Expect = e-119
Identities = 211/221 (95%), Positives = 211/221 (95%)
Frame = +1
Query: 277 FSVXXXXXXXXLRPPGPMRFLMSCSLFLPRAVQVLAAEAGLSPRRSFMGFAAPFTNKRKA 456
FSV LRPPGPMRFLMSCSLFLPRAVQVLAAEA LSPRRSFMGFAAPFTNKRKA
Sbjct: 23 FSVRPAPPPGPLRPPGPMRFLMSCSLFLPRAVQVLAAEADLSPRRSFMGFAAPFTNKRKA 82
Query: 457 YSERRIMGYSMQEMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYT 636
YSERRIMGYSMQEMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYT
Sbjct: 83 YSERRIMGYSMQEMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYT 142
Query: 637 SAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLA 816
SAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLA
Sbjct: 143 SAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLA 202
Query: 817 TMFFDEVVKQNVAAFERRAATKFGPETAVPRELMFHEGHQT 939
TMFFDEVVKQNVAAFERRAATKFGPETAVPRELMFHE HQT
Sbjct: 203 TMFFDEVVKQNVAAFERRAATKFGPETAVPRELMFHEVHQT 243
>ref|XP_003126316.1| PREDICTED: coenzyme Q-binding protein COQ10 homolog A,
mitochondrial isoform 2 [Sus scrofa].
Length = 194
Score = 313 bits (802), Expect = 1e-85
Identities = 153/155 (98%), Positives = 153/155 (98%)
Frame = +1
Query: 475 MGYSMQEMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMV 654
M YSMQEMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMV
Sbjct: 40 MRYSMQEMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMV 99
Query: 655 KPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDE 834
KPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDE
Sbjct: 100 KPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDE 159
Query: 835 VVKQNVAAFERRAATKFGPETAVPRELMFHEGHQT 939
VVKQNVAAFERRAATKFGPETAVPRELMFHE HQT
Sbjct: 160 VVKQNVAAFERRAATKFGPETAVPRELMFHEVHQT 194
>ref|XP_001928809.1| PREDICTED: coenzyme Q-binding protein COQ10 homolog B,
mitochondrial isoform 1 [Sus scrofa].
Length = 244
Score = 296 bits (757), Expect = 2e-80
Identities = 140/212 (66%), Positives = 169/212 (79%), Gaps = 4/212 (1%)
Frame = +1
Query: 316 PPGPMRFLMSCSLFLPRAVQVLAAEAGLSPR----RSFMGFAAPFTNKRKAYSERRIMGY 483
PP +R+L SC + + R L + P+ R+F AAP NKRK YSERRI+GY
Sbjct: 36 PPRNIRYLASCGILMNRT---LPLHSSFLPKEIYARTFFRIAAPLINKRKEYSERRIIGY 92
Query: 484 SMQEMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPH 663
SMQEMY+VV+ +++Y+ FVPWCKKS V+S R G+ K +LE+GFPPV+ERYTS V++VKPH
Sbjct: 93 SMQEMYDVVSGMEDYKHFVPWCKKSDVISRRSGYCKTRLEIGFPPVLERYTSVVTLVKPH 152
Query: 664 MVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVK 843
+VKA CTDGKLFNHLET+WRFSPG+P YPRTCT+DFSISFEFRSLLHSQLAT+FFDEVVK
Sbjct: 153 LVKASCTDGKLFNHLETVWRFSPGLPGYPRTCTLDFSISFEFRSLLHSQLATLFFDEVVK 212
Query: 844 QNVAAFERRAATKFGPETAVPRELMFHEGHQT 939
Q VAAFERRA +GPET++PRELM HE H T
Sbjct: 213 QMVAAFERRACKLYGPETSIPRELMLHEVHHT 244
>ref|XP_003133609.1| PREDICTED: coenzyme Q-binding protein COQ10 homolog B,
mitochondrial isoform 2 [Sus scrofa].
Length = 194
Score = 256 bits (654), Expect = 1e-68
Identities = 116/157 (73%), Positives = 138/157 (87%)
Frame = +1
Query: 469 RIMGYSMQEMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVS 648
R + YSMQEMY+VV+ +++Y+ FVPWCKKS V+S R G+ K +LE+GFPPV+ERYTS V+
Sbjct: 38 RNIRYSMQEMYDVVSGMEDYKHFVPWCKKSDVISRRSGYCKTRLEIGFPPVLERYTSVVT 97
Query: 649 MVKPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFF 828
+VKPH+VKA CTDGKLFNHLET+WRFSPG+P YPRTCT+DFSISFEFRSLLHSQLAT+FF
Sbjct: 98 LVKPHLVKASCTDGKLFNHLETVWRFSPGLPGYPRTCTLDFSISFEFRSLLHSQLATLFF 157
Query: 829 DEVVKQNVAAFERRAATKFGPETAVPRELMFHEGHQT 939
DEVVKQ VAAFERRA +GPET++PRELM HE H T
Sbjct: 158 DEVVKQMVAAFERRACKLYGPETSIPRELMLHEVHHT 194
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,741,302
Number of extensions: 728068
Number of successful extensions: 1737
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1736
Number of HSP's successfully gapped: 5
Length of query: 337
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 237
Effective length of database: 8,854,232
Effective search space: 2098452984
Effective search space used: 2098452984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009228
(1013 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074509.1| coenzyme Q-binding protein COQ10 homolog A, ... 393 e-109
Alignment gi|NP_001034799.1| coenzyme Q-binding protein COQ10 homolog B, ... 288 6e-78
Alignment gi|NP_080700.3| coenzyme Q-binding protein COQ10 homolog B, mit... 254 6e-68
>ref|NP_001074509.1| coenzyme Q-binding protein COQ10 homolog A, mitochondrial [Mus
musculus].
Length = 259
Score = 393 bits (1009), Expect = e-109
Identities = 195/219 (89%), Positives = 202/219 (92%), Gaps = 10/219 (4%)
Frame = +1
Query: 313 RPPGPMRFLMSCSLFLPRAVQVLAAEAGLSPRRSFMGFAAPFTNKRKAYSERRIMG---- 480
RPP PMRFL+SC+LFLPRA Q LAAEAGL RSFMGFAAPFTNKRKAYSERRIMG
Sbjct: 41 RPPRPMRFLISCNLFLPRAAQALAAEAGLPHSRSFMGFAAPFTNKRKAYSERRIMGSSAS 100
Query: 481 ------YSMQEMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSA 642
YSMQEM+EVV+NVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPV+ERYTSA
Sbjct: 101 DSSCCRYSMQEMFEVVSNVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVLERYTSA 160
Query: 643 VSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATM 822
VSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIP+YPRTCTVDFSISFEFRSLLHSQLATM
Sbjct: 161 VSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIPSYPRTCTVDFSISFEFRSLLHSQLATM 220
Query: 823 FFDEVVKQNVAAFERRAATKFGPETAVPRELMFHEGHQT 939
FFDEVVKQNVAAFERRAATKFGPETA+PRELMFHE HQT
Sbjct: 221 FFDEVVKQNVAAFERRAATKFGPETAIPRELMFHEVHQT 259
>ref|NP_001034799.1| coenzyme Q-binding protein COQ10 homolog B, mitochondrial isoform 1
[Mus musculus].
Length = 242
Score = 288 bits (736), Expect = 6e-78
Identities = 138/208 (66%), Positives = 167/208 (80%), Gaps = 4/208 (1%)
Frame = +1
Query: 328 MRFLMSCSLFLPRAVQVLAAEAGLSPR----RSFMGFAAPFTNKRKAYSERRIMGYSMQE 495
+R L +C + + R + AA + P+ R+F +AP NKRK YSERRI+GYSMQE
Sbjct: 38 VRHLAACGVLINRTLPPCAA---VLPKEICARTFFRISAPLVNKRKEYSERRILGYSMQE 94
Query: 496 MYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMVKA 675
MY+VV+ +++Y+ FVPWCKKS ++S R G+ K +LEVGFPPV+ERYTS V++VKPH+VKA
Sbjct: 95 MYDVVSGMEDYQHFVPWCKKSDIISRRSGYCKTRLEVGFPPVLERYTSIVTLVKPHLVKA 154
Query: 676 VCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNVA 855
CTDGKLFNHLETIWRFSPG+P YPRTCT+DFSISFEFRSLLHSQLAT+FFDEVVKQ VA
Sbjct: 155 SCTDGKLFNHLETIWRFSPGLPGYPRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVA 214
Query: 856 AFERRAATKFGPETAVPRELMFHEGHQT 939
AFERRA +GPET +PRELM HE H T
Sbjct: 215 AFERRACKLYGPETNIPRELMLHEIHHT 242
>ref|NP_080700.3| coenzyme Q-binding protein COQ10 homolog B, mitochondrial isoform 2
[Mus musculus].
Length = 192
Score = 254 bits (650), Expect = 6e-68
Identities = 118/162 (72%), Positives = 138/162 (85%)
Frame = +1
Query: 454 AYSERRIMGYSMQEMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERY 633
A R + YSMQEMY+VV+ +++Y+ FVPWCKKS ++S R G+ K +LEVGFPPV+ERY
Sbjct: 31 ARGSARDVRYSMQEMYDVVSGMEDYQHFVPWCKKSDIISRRSGYCKTRLEVGFPPVLERY 90
Query: 634 TSAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQL 813
TS V++VKPH+VKA CTDGKLFNHLETIWRFSPG+P YPRTCT+DFSISFEFRSLLHSQL
Sbjct: 91 TSIVTLVKPHLVKASCTDGKLFNHLETIWRFSPGLPGYPRTCTLDFSISFEFRSLLHSQL 150
Query: 814 ATMFFDEVVKQNVAAFERRAATKFGPETAVPRELMFHEGHQT 939
AT+FFDEVVKQ VAAFERRA +GPET +PRELM HE H T
Sbjct: 151 ATLFFDEVVKQMVAAFERRACKLYGPETNIPRELMLHEIHHT 192
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,526,104
Number of extensions: 755003
Number of successful extensions: 2152
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2148
Number of HSP's successfully gapped: 3
Length of query: 337
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 235
Effective length of database: 12,553,887
Effective search space: 2950163445
Effective search space used: 2950163445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009228
(1013 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_653177.3| coenzyme Q-binding protein COQ10 homolog A, mit... 403 e-112
Alignment gi|NP_001092807.1| coenzyme Q-binding protein COQ10 homolog A, ... 391 e-109
Alignment gi|NP_079423.1| coenzyme Q-binding protein COQ10 homolog B, mit... 291 8e-79
>ref|NP_653177.3| coenzyme Q-binding protein COQ10 homolog A, mitochondrial isoform a
[Homo sapiens].
Length = 247
Score = 403 bits (1036), Expect = e-112
Identities = 198/210 (94%), Positives = 201/210 (95%)
Frame = +1
Query: 310 LRPPGPMRFLMSCSLFLPRAVQVLAAEAGLSPRRSFMGFAAPFTNKRKAYSERRIMGYSM 489
L PP PMRFL SCSL LPRA Q+LAAEAGL RSFMGFAAPFTNKRKAYSERRIMGYSM
Sbjct: 38 LPPPRPMRFLTSCSLLLPRAAQILAAEAGLPSSRSFMGFAAPFTNKRKAYSERRIMGYSM 97
Query: 490 QEMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMV 669
QEMYEVV+NVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMV
Sbjct: 98 QEMYEVVSNVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMV 157
Query: 670 KAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQN 849
KAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQN
Sbjct: 158 KAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQN 217
Query: 850 VAAFERRAATKFGPETAVPRELMFHEGHQT 939
VAAFERRAATKFGPETA+PRELMFHE HQT
Sbjct: 218 VAAFERRAATKFGPETAIPRELMFHEVHQT 247
>ref|NP_001092807.1| coenzyme Q-binding protein COQ10 homolog A, mitochondrial isoform b
[Homo sapiens].
Length = 215
Score = 391 bits (1005), Expect = e-109
Identities = 192/202 (95%), Positives = 195/202 (96%)
Frame = +1
Query: 334 FLMSCSLFLPRAVQVLAAEAGLSPRRSFMGFAAPFTNKRKAYSERRIMGYSMQEMYEVVA 513
FL SCSL LPRA Q+LAAEAGL RSFMGFAAPFTNKRKAYSERRIMGYSMQEMYEVV+
Sbjct: 14 FLTSCSLLLPRAAQILAAEAGLPSSRSFMGFAAPFTNKRKAYSERRIMGYSMQEMYEVVS 73
Query: 514 NVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMVKAVCTDGK 693
NVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMVKAVCTDGK
Sbjct: 74 NVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMVKAVCTDGK 133
Query: 694 LFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNVAAFERRA 873
LFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNVAAFERRA
Sbjct: 134 LFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNVAAFERRA 193
Query: 874 ATKFGPETAVPRELMFHEGHQT 939
ATKFGPETA+PRELMFHE HQT
Sbjct: 194 ATKFGPETAIPRELMFHEVHQT 215
>ref|NP_079423.1| coenzyme Q-binding protein COQ10 homolog B, mitochondrial precursor
[Homo sapiens].
Length = 238
Score = 291 bits (744), Expect = 8e-79
Identities = 138/207 (66%), Positives = 164/207 (79%), Gaps = 4/207 (1%)
Frame = +1
Query: 331 RFLMSCSLFLPRAVQVLAAEAGLSPR----RSFMGFAAPFTNKRKAYSERRIMGYSMQEM 498
R+L SC + + R L + P+ R+F AP NKRK YSERRI+GYSMQEM
Sbjct: 35 RYLASCGILMSRT---LPLHTSILPKEICARTFFKITAPLINKRKEYSERRILGYSMQEM 91
Query: 499 YEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMVKAV 678
Y+VV+ V++Y+ FVPWCKKS V+S R G+ K +LE+GFPPV+ERYTS V++VKPH+VKA
Sbjct: 92 YDVVSGVEDYKHFVPWCKKSDVISKRSGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKAS 151
Query: 679 CTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNVAA 858
CTDG+LFNHLETIWRFSPG+P YPRTCT+DFSISFEFRSLLHSQLAT+FFDEVVKQ VAA
Sbjct: 152 CTDGRLFNHLETIWRFSPGLPGYPRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAA 211
Query: 859 FERRAATKFGPETAVPRELMFHEGHQT 939
FERRA +GPET +PRELM HE H T
Sbjct: 212 FERRACKLYGPETNIPRELMLHEVHHT 238
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,130,022
Number of extensions: 902909
Number of successful extensions: 2732
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2730
Number of HSP's successfully gapped: 3
Length of query: 337
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,901,872
Effective search space: 3487038048
Effective search space used: 3487038048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009228
(1013 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 391 e-106
Sscrofa_Chr15 60 2e-06
>Sscrofa_Chr05
|| Length = 111506441
Score = 391 bits (197), Expect = e-106
Identities = 232/241 (96%), Gaps = 2/241 (0%)
Strand = Plus / Plus
Query: 775 atttcctttgaatttcgttctctgctgcactcccagctggccaccatgttttttgatgag 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23159526 atttcctttgaatttcgttctctgctgcactcccagctggccaccatgttttttgatgag 23159585
Query: 835 gttgtcaaacagaatgtcgctgctttcgagcgtcgggcagcaaccaagtttggtccagaa 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23159586 gttgtcaaacagaatgtcgctgctttcgagcgtcgggcagcaaccaagtttggtccagaa 23159645
Query: 895 acagccgtccctcgtgaactgatgttccatgaggggcaccagacctgaggcaaaggactg 954
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 23159646 acagccgtccctcgtgaactgatgttccatgaggtgcaccagacctgaggcaaaggactg 23159705
Query: 955 gttcctagcctctcttctcttct-cctcccca-ccaattttggtattaatttcatttggc 1012
| |||||||||||||||||||| |||||||| |||||| | |||| ||||||||||||
Sbjct: 23159706 ttccctagcctctcttctcttctccctccccacccaattctcttatttatttcatttggc 23159765
Query: 1013 t 1013
|
Sbjct: 23159766 t 23159766
Score = 387 bits (195), Expect = e-105
Identities = 195/195 (100%)
Strand = Plus / Plus
Query: 479 ggtactcaatgcaggagatgtacgaggtggtagccaatgtccaggagtatcgtgagtttg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23158751 ggtactcaatgcaggagatgtacgaggtggtagccaatgtccaggagtatcgtgagtttg 23158810
Query: 539 taccctggtgtaagaagtccttggtggtatccagccgcaaaggtcacctgaaggcccagt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23158811 taccctggtgtaagaagtccttggtggtatccagccgcaaaggtcacctgaaggcccagt 23158870
Query: 599 tggaggttggctttccacctgtcatggaacgttatacttctgctgtttccatggtcaaac 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23158871 tggaggttggctttccacctgtcatggaacgttatacttctgctgtttccatggtcaaac 23158930
Query: 659 ctcacatggtcaagg 673
|||||||||||||||
Sbjct: 23158931 ctcacatggtcaagg 23158945
Score = 387 bits (195), Expect = e-105
Identities = 195/195 (100%)
Strand = Plus / Minus
Query: 479 ggtactcaatgcaggagatgtacgaggtggtagccaatgtccaggagtatcgtgagtttg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23176325 ggtactcaatgcaggagatgtacgaggtggtagccaatgtccaggagtatcgtgagtttg 23176266
Query: 539 taccctggtgtaagaagtccttggtggtatccagccgcaaaggtcacctgaaggcccagt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23176265 taccctggtgtaagaagtccttggtggtatccagccgcaaaggtcacctgaaggcccagt 23176206
Query: 599 tggaggttggctttccacctgtcatggaacgttatacttctgctgtttccatggtcaaac 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23176205 tggaggttggctttccacctgtcatggaacgttatacttctgctgtttccatggtcaaac 23176146
Query: 659 ctcacatggtcaagg 673
|||||||||||||||
Sbjct: 23176145 ctcacatggtcaagg 23176131
Score = 383 bits (193), Expect = e-103
Identities = 231/241 (95%), Gaps = 2/241 (0%)
Strand = Plus / Minus
Query: 775 atttcctttgaatttcgttctctgctgcactcccagctggccaccatgttttttgatgag 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23175551 atttcctttgaatttcgttctctgctgcactcccagctggccaccatgttttttgatgag 23175492
Query: 835 gttgtcaaacagaatgtcgctgctttcgagcgtcgggcagcaaccaagtttggtccagaa 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23175491 gttgtcaaacagaatgtcgctgctttcgagcgtcgggcagcaaccaagtttggtccagaa 23175432
Query: 895 acagccgtccctcgtgaactgatgttccatgaggggcaccagacctgaggcaaaggactg 954
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 23175431 acagccgtccctcgtgaactgatgttccatgaggtgcaccagacctgaggcaaaggactg 23175372
Query: 955 gttcctagcctctcttctcttct-cctcccca-ccaattttggtattaatttcatttggc 1012
| ||||||||||||||||| || |||||||| |||||| | |||| ||||||||||||
Sbjct: 23175371 ttccctagcctctcttctctcctccctccccacccaattctcttatttatttcatttggc 23175312
Query: 1013 t 1013
|
Sbjct: 23175311 t 23175311
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 331 agatttctgatgtcctgcagcctcttcttgccccgggctgtccaggtcttggcggctgag 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23157440 agatttctgatgtcctgcagcctcttcttgccccgggctgtccaggtcttggcggctgag 23157499
Query: 391 gctggcttatctcccagacgttcctttatgggctttgctgcccccttcaccaacaagcga 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23157500 gctggcttatctcccagacgttcctttatgggctttgctgcccccttcaccaacaagcga 23157559
Query: 451 aaggcttactccgagcgtaggatcatggggt 481
|||||||||||||||||||||||||||||||
Sbjct: 23157560 aaggcttactccgagcgtaggatcatggggt 23157590
Score = 291 bits (147), Expect = 4e-76
Identities = 150/151 (99%)
Strand = Plus / Minus
Query: 331 agatttctgatgtcctgcagcctcttcttgccccgggctgtccaggtcttggcggctgag 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23177423 agatttctgatgtcctgcagcctcttcttgccccgggctgtccaggtcttggcggctgag 23177364
Query: 391 gctggcttatctcccagacgttcctttatgggctttgctgcccccttcaccaacaagcga 450
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23177363 gctgacttatctcccagacgttcctttatgggctttgctgcccccttcaccaacaagcga 23177304
Query: 451 aaggcttactccgagcgtaggatcatggggt 481
|||||||||||||||||||||||||||||||
Sbjct: 23177303 aaggcttactccgagcgtaggatcatggggt 23177273
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 671 aggctgtttgcactgatggcaagctcttcaaccacttagagaccatttggcggttcagcc 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23159128 aggctgtttgcactgatggcaagctcttcaaccacttagagaccatttggcggttcagcc 23159187
Query: 731 ctggtattcctgcctatccgagaacttgcactgtggacttttca 774
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23159188 ctggtattcctgcctatccgagaacttgcactgtggacttttca 23159231
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 671 aggctgtttgcactgatggcaagctcttcaaccacttagagaccatttggcggttcagcc 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23175948 aggctgtttgcactgatggcaagctcttcaaccacttagagaccatttggcggttcagcc 23175889
Query: 731 ctggtattcctgcctatccgagaacttgcactgtggacttttca 774
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23175888 ctggtattcctgcctatccgagaacttgcactgtggacttttca 23175845
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 115 tgaactcgcccagcgatcgcttccctccgctcttcctctggagtgaggaaggcgcagcgg 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23156673 tgaactcgcccagcgatcgcttccctccgctcttcctctggagtgaggaaggcgcagcgg 23156732
Query: 175 gtatcagagccaaaagggcaagggagggtcgcgcgcatggcct 217
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23156733 gtatcagagccaaaagggcaagggagggtcgcgcgcatggcct 23156775
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 115 tgaactcgcccagcgatcgcttccctccgctcttcctctggagtgaggaaggcgcagcgg 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23178190 tgaactcgcccagcgatcgcttccctccgctcttcctctggagtgaggaaggcgcagcgg 23178131
Query: 175 gtatcagagccaaaagggcaagggagggtcgcgcgcatggcct 217
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23178130 gtatcagagccaaaagggcaagggagggtcgcgcgcatggcct 23178088
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 4 acagcgtgacgtgggggtactgagagccgcgggagcagcggtcgcggcttcagttctagg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23178301 acagcgtgacgtgggggtactgagagccgcgggagcagcggtcgcggcttcagttctagg 23178242
Query: 64 ctacccagt 72
|||||||||
Sbjct: 23178241 ctacccagt 23178233
Score = 129 bits (65), Expect = 3e-27
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 4 acagcgtgacgtgggggtactgagagccgcgggagcagcggtcgcggcttcagttctagg 63
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 23156562 acagcgtgacgtgggggtactgagagccgctggagcagcggtcgcggcttcagttctagg 23156621
Query: 64 ctacccagt 72
|||||||||
Sbjct: 23156622 ctacccagt 23156630
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 246 tacgcgcgccgctgcccggggttgcggtggcttctctgt 284
|||||||||||||||||||||||||||||||||||||||
Sbjct: 23156804 tacgcgcgccgctgcccggggttgcggtggcttctctgt 23156842
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 246 tacgcgcgccgctgcccggggttgcggtggcttctctgt 284
|||||||||||||||||||||||||||||||||||||||
Sbjct: 23178059 tacgcgcgccgctgcccggggttgcggtggcttctctgt 23178021
>Sscrofa_Chr15
|| Length = 157681621
Score = 60.0 bits (30), Expect = 2e-06
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 685 gatggcaagctcttcaaccacttagagaccatttggcggttcagccctggtattcctgcc 744
||||| |||||||| || ||||||||||| ||||||| || ||||| ||| |||||| |
Sbjct: 112524569 gatgggaagctctttaatcacttagagactgtttggcgttttagcccaggtcttcctggc 112524628
Query: 745 tatccgagaacttgcactgtggacttttca 774
|| || |||||||| ||| |||| ||||||
Sbjct: 112524629 tacccaagaacttgtactttggatttttca 112524658
Score = 60.0 bits (30), Expect = 2e-06
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 775 atttcctttgaatttcgttctctgctgcactcccagctggccaccatgttttttgatgag 834
||||| ||||||||||| || || |||||||| ||||| ||||| |||||||||||||
Sbjct: 112527701 atttcttttgaatttcgatcacttctgcactctcagcttgccacattgttttttgatgaa 112527760
Query: 835 gttgtcaaacagaatgtcgctgcttt 860
||||| || |||| || ||||||||
Sbjct: 112527761 gttgtgaagcagatggtagctgcttt 112527786
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,594,671
Number of extensions: 167
Number of successful extensions: 167
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 16
Length of query: 1013
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 992
Effective length of database: 2,808,413,156
Effective search space: 2785945850752
Effective search space used: 2785945850752
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)