Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009230
(901 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069513.1| beta-lactamase-like protein 2 [Bos taurus]. 486 e-137
Alignment gi|NP_001107642.1| probable hydrolase PNKD isoform 1 [Bos tauru... 51 2e-06
Alignment gi|NP_001029516.1| protein ETHE1, mitochondrial precursor [Bos ... 49 8e-06
>ref|NP_001069513.1| beta-lactamase-like protein 2 [Bos taurus].
Length = 288
Score = 486 bits (1251), Expect = e-137
Identities = 232/257 (90%), Positives = 248/257 (96%)
Frame = +1
Query: 64 MAAVLQRIERLSSRVIRVLGCNPGPMTLQGTNTYLVGTGPRRILIDTGEPAIPEYISCLK 243
MAA LQRIERLSSRVIRVLGCNPGPMTLQGTNTYLVGTGPRRILIDTGEP+IPEYISCLK
Sbjct: 1 MAATLQRIERLSSRVIRVLGCNPGPMTLQGTNTYLVGTGPRRILIDTGEPSIPEYISCLK 60
Query: 244 QALKEFNTAIQEIIVTHWHRDHSGGIEDICKSISNDTTYCIKKLPRHPERKEVIGDGEQQ 423
QAL EFNTAIQEIIVTHWHRDH+GGI DICKSI+NDTTYC+KKLPR+PERKE+IG+GEQQ
Sbjct: 61 QALTEFNTAIQEIIVTHWHRDHTGGIGDICKSINNDTTYCVKKLPRNPERKEIIGNGEQQ 120
Query: 424 YVYVKDGDVIKTEGATLRVIYTPGHTDDHMALLLEEENAVFSGDCILGEGTTIFEDLYDY 603
YVYVKDGD+IKTEGATLRV+YTPGHTDDHMAL+LEEENA+FSGDCILGEGTT+FEDLYDY
Sbjct: 121 YVYVKDGDIIKTEGATLRVVYTPGHTDDHMALVLEEENALFSGDCILGEGTTVFEDLYDY 180
Query: 604 MNSLKNLLKVKANVIYPGHGPVIHNAEAKILEYISHRNIREQQILTVFDENFGKSFTAME 783
MNSLK LLK+KA VIYPGHGPVIHNAEAKIL+YISHRNIREQQILTVF ENF KSFTAME
Sbjct: 181 MNSLKELLKIKAKVIYPGHGPVIHNAEAKILQYISHRNIREQQILTVFHENFEKSFTAME 240
Query: 784 LVKMIYQNIPEHLHKMA 834
LVK IY++ PEHLHKMA
Sbjct: 241 LVKSIYKDTPEHLHKMA 257
>ref|NP_001107642.1| probable hydrolase PNKD isoform 1 [Bos taurus].
Length = 385
Score = 50.8 bits (120), Expect = 2e-06
Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 13/203 (6%)
Frame = +1
Query: 91 RLSSRVIRVLGCNPGPMTLQGTNTYLVGTGPR-RILIDTGEPAIPEYISCLKQALKEFNT 267
R R+ + P P+ + ++ T R + +D +P ++ ++++
Sbjct: 110 RTQPRLFNGVKVLPIPVLSDNYSYLIIDTQARLAVAVDPSDP------QAVQASIEKEGV 163
Query: 268 AIQEIIVTHWHRDHSGGIEDICKSISNDTTYCIKKLPRHPERKEVIGDGEQQYVYVKDG- 444
+ I+ TH H DHSGG D+ + RH + + V G + Y+
Sbjct: 164 NLVAILCTHKHWDHSGGNRDLSR--------------RHQDCR-VYGSPQDSIPYLTHPL 208
Query: 445 ---DVIKTEGATLRVIYTPGHTDDHMALLLEEE-----NAVFSGDCIL--GEGTTIFEDL 594
DV+ +R + TPGHT H+ LL+ E + +FSGD + G G T
Sbjct: 209 CHQDVVSVGRLQIRALATPGHTQGHLVYLLDGEPYEGPSCLFSGDLLFLSGCGRTFEGTA 268
Query: 595 YDYMNSLKNLLKV-KANVIYPGH 660
++SL +L + +++PGH
Sbjct: 269 ETMLSSLDTVLGLGDDTLLWPGH 291
>ref|NP_001029516.1| protein ETHE1, mitochondrial precursor [Bos taurus].
Length = 254
Score = 48.5 bits (114), Expect = 8e-06
Identities = 61/223 (27%), Positives = 91/223 (40%), Gaps = 10/223 (4%)
Frame = +1
Query: 154 TNTYLVGTGPRR--ILIDTGEPAIPEYISCLKQALKEFNTAIQEIIVTHWHRDHSGGIED 327
T TYL+G R +LID + E Q +KE + + TH H DH G
Sbjct: 35 TYTYLLGDRESREAVLIDP----VLETAQRDAQLVKELGLRLLYAVNTHCHADHITG-SG 89
Query: 328 ICKSISNDTTYCIKKLPRHPERKEVIGDGEQQYVYVKDGDVIKTEGATLRVIYTPGHTDD 507
+ +S+ I +L G Q +++DGD I+ L +PGHT
Sbjct: 90 LLRSLLPGCQSVISRL-----------SGAQADWHIEDGDSIQFGRFALETRASPGHTPG 138
Query: 508 HMALLLEEENAVFSGDCIL--GEGTTIF-----EDLYDYMNSLKNLLKVKAN-VIYPGHG 663
+ +L + + F+GD +L G G T F E LY ++ + + + N +IYP H
Sbjct: 139 CVTFVLNDHSMAFTGDALLIRGCGRTDFQQGCAETLYHSVH--EKIFTLPGNCLIYPAHD 196
Query: 664 PVIHNAEAKILEYISHRNIREQQILTVFDENFGKSFTAMELVK 792
H +E N R LT+ E F K + L K
Sbjct: 197 --YHGLTVSTVEEERTLNPR----LTLSCEEFVKVMDKLNLPK 233
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,343,359
Number of extensions: 979733
Number of successful extensions: 2477
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2473
Number of HSP's successfully gapped: 3
Length of query: 300
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 198
Effective length of database: 14,306,398
Effective search space: 2832666804
Effective search space used: 2832666804
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009230
(901 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544119.2| PREDICTED: similar to lactamase, beta 2 isoform... 460 e-130
Alignment gi|XP_859500.1| PREDICTED: similar to lactamase, beta 2 isoform... 195 6e-50
Alignment gi|XP_859562.1| PREDICTED: similar to lactamase, beta 2 isoform... 77 2e-14
>ref|XP_544119.2| PREDICTED: similar to lactamase, beta 2 isoform 1 [Canis
familiaris].
Length = 288
Score = 460 bits (1184), Expect = e-130
Identities = 224/276 (81%), Positives = 244/276 (88%)
Frame = +1
Query: 64 MAAVLQRIERLSSRVIRVLGCNPGPMTLQGTNTYLVGTGPRRILIDTGEPAIPEYISCLK 243
M+AVLQRIERLS RV+RVLGCNPGPMTLQGTNTYLVG G RRILIDTGEPAI EYISCLK
Sbjct: 1 MSAVLQRIERLSGRVVRVLGCNPGPMTLQGTNTYLVGVGTRRILIDTGEPAITEYISCLK 60
Query: 244 QALKEFNTAIQEIIVTHWHRDHSGGIEDICKSISNDTTYCIKKLPRHPERKEVIGDGEQQ 423
QAL EFNT IQEIIVTHWH DH+GGI DICKSI+NDT YCIKKLPR+P ++E+IGDG QQ
Sbjct: 61 QALTEFNTTIQEIIVTHWHHDHTGGIGDICKSINNDTAYCIKKLPRNPWKEEIIGDGTQQ 120
Query: 424 YVYVKDGDVIKTEGATLRVIYTPGHTDDHMALLLEEENAVFSGDCILGEGTTIFEDLYDY 603
YVY++DGDVIKTEGATLRVI+TPGHTDDHMAL LEEENA+FSGDCILGEGTTIFEDLYDY
Sbjct: 121 YVYLQDGDVIKTEGATLRVIHTPGHTDDHMALYLEEENAIFSGDCILGEGTTIFEDLYDY 180
Query: 604 MNSLKNLLKVKANVIYPGHGPVIHNAEAKILEYISHRNIREQQILTVFDENFGKSFTAME 783
MNSLK LLKVKA++IYPGHGPVIHNAEAKILEYISHRN REQQILT+F +NF KSFTAME
Sbjct: 181 MNSLKVLLKVKADIIYPGHGPVIHNAEAKILEYISHRNTREQQILTLFRDNFEKSFTAME 240
Query: 784 LVKMIYQNIPEHLHKMAXXXXXXXXXXXXXMGKYFS 891
LVK IY+N+P++LHKMA GK FS
Sbjct: 241 LVKSIYKNVPDNLHKMAEHNVLLHLKKLEKEGKIFS 276
>ref|XP_859500.1| PREDICTED: similar to lactamase, beta 2 isoform 3 [Canis
familiaris].
Length = 139
Score = 195 bits (495), Expect = 6e-50
Identities = 97/127 (76%), Positives = 106/127 (83%)
Frame = +1
Query: 511 MALLLEEENAVFSGDCILGEGTTIFEDLYDYMNSLKNLLKVKANVIYPGHGPVIHNAEAK 690
MAL LEEENA+FSGDCILGEGTTIFEDLYDYMNSLK LLKVKA++IYPGHGPVIHNAEAK
Sbjct: 1 MALYLEEENAIFSGDCILGEGTTIFEDLYDYMNSLKVLLKVKADIIYPGHGPVIHNAEAK 60
Query: 691 ILEYISHRNIREQQILTVFDENFGKSFTAMELVKMIYQNIPEHLHKMAXXXXXXXXXXXX 870
ILEYISHRN REQQILT+F +NF KSFTAMELVK IY+N+P++LHKMA
Sbjct: 61 ILEYISHRNTREQQILTLFRDNFEKSFTAMELVKSIYKNVPDNLHKMAEHNVLLHLKKLE 120
Query: 871 XMGKYFS 891
GK FS
Sbjct: 121 KEGKIFS 127
>ref|XP_859562.1| PREDICTED: similar to lactamase, beta 2 isoform 4 [Canis
familiaris].
Length = 46
Score = 77.4 bits (189), Expect = 2e-14
Identities = 36/45 (80%), Positives = 40/45 (88%)
Frame = +1
Query: 64 MAAVLQRIERLSSRVIRVLGCNPGPMTLQGTNTYLVGTGPRRILI 198
M+AVLQRIERLS RV+RVLGCNPGPMTLQGTNTYLVG G R ++
Sbjct: 1 MSAVLQRIERLSGRVVRVLGCNPGPMTLQGTNTYLVGVGTRYCIL 45
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,881,879
Number of extensions: 1005188
Number of successful extensions: 2696
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2693
Number of HSP's successfully gapped: 3
Length of query: 300
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 198
Effective length of database: 15,474,232
Effective search space: 3063897936
Effective search space used: 3063897936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009230
(901 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230339.1| beta-lactamase-like protein 2 [Sus scrofa]. 525 e-149
Alignment gi|XP_003127257.2| PREDICTED: protein ETHE1, mitochondrial-like... 48 6e-06
Alignment gi|XP_003355984.1| PREDICTED: protein ETHE1, mitochondrial-like... 48 6e-06
>ref|NP_001230339.1| beta-lactamase-like protein 2 [Sus scrofa].
Length = 288
Score = 525 bits (1351), Expect = e-149
Identities = 260/276 (94%), Positives = 261/276 (94%)
Frame = +1
Query: 64 MAAVLQRIERLSSRVIRVLGCNPGPMTLQGTNTYLVGTGPRRILIDTGEPAIPEYISCLK 243
MAAVLQRIERLSSRVIRVLGCNPGPMTLQGTNTYLVGTGPRRILIDTGEPAIPEYISCLK
Sbjct: 1 MAAVLQRIERLSSRVIRVLGCNPGPMTLQGTNTYLVGTGPRRILIDTGEPAIPEYISCLK 60
Query: 244 QALKEFNTAIQEIIVTHWHRDHSGGIEDICKSISNDTTYCIKKLPRHPERKEVIGDGEQQ 423
QALKEFNTAIQEIIVTHWHRDHSGGIEDICKSISNDTTYCIKKLPRHPERKEVIGDGEQQ
Sbjct: 61 QALKEFNTAIQEIIVTHWHRDHSGGIEDICKSISNDTTYCIKKLPRHPERKEVIGDGEQQ 120
Query: 424 YVYVKDGDVIKTEGATLRVIYTPGHTDDHMALLLEEENAVFSGDCILGEGTTIFEDLYDY 603
YVYVKDGDVIKTEGATLRVIYTPGHTDDHMALLLEEENAVFSGDCILGEGTTIFEDLYDY
Sbjct: 121 YVYVKDGDVIKTEGATLRVIYTPGHTDDHMALLLEEENAVFSGDCILGEGTTIFEDLYDY 180
Query: 604 MNSLKNLLKVKANVIYPGHGPVIHNAEAKILEYISHRNIREQQILTVFDENFGKSFTAME 783
MNSLKNLLKVKANVIYPGHGPVIHNAEAKILEYISHRNIREQQILTVFDENFGKSFTAME
Sbjct: 181 MNSLKNLLKVKANVIYPGHGPVIHNAEAKILEYISHRNIREQQILTVFDENFGKSFTAME 240
Query: 784 LVKMIYQNIPEHLHKMAXXXXXXXXXXXXXMGKYFS 891
LVKMIY+NIPEHLHKMA GK FS
Sbjct: 241 LVKMIYKNIPEHLHKMAKNNVLLHLKKLEKDGKIFS 276
>ref|XP_003127257.2| PREDICTED: protein ETHE1, mitochondrial-like isoform 1 [Sus
scrofa].
Length = 292
Score = 48.1 bits (113), Expect = 6e-06
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 4/149 (2%)
Frame = +1
Query: 154 TNTYLVGTGPRR--ILIDTGEPAIPEYISCLKQALKEFNTAIQEIIVTHWHRDHSGGIED 327
T TYL+G R ILID + E Q +KE + + TH H DH G
Sbjct: 73 TYTYLLGDRESREAILIDP----VLETAHRDAQLVKELGLRLLYAVNTHCHADHITG-SG 127
Query: 328 ICKSISNDTTYCIKKLPRHPERKEVIGDGEQQYVYVKDGDVIKTEGATLRVIYTPGHTDD 507
+ +S+ I +L G Q ++++DGD I+ L +PGHT
Sbjct: 128 LLRSLLPGCQSVISRL-----------SGAQADLHIEDGDSIRFGRFALETRASPGHTPG 176
Query: 508 HMALLLEEENAVFSGDCIL--GEGTTIFE 588
+ +L +++ F+GD +L G G T F+
Sbjct: 177 CVTFVLNDQSMAFTGDALLIRGCGRTDFQ 205
>ref|XP_003355984.1| PREDICTED: protein ETHE1, mitochondrial-like isoform 2 [Sus
scrofa].
Length = 351
Score = 48.1 bits (113), Expect = 6e-06
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 4/149 (2%)
Frame = +1
Query: 154 TNTYLVGTGPRR--ILIDTGEPAIPEYISCLKQALKEFNTAIQEIIVTHWHRDHSGGIED 327
T TYL+G R ILID + E Q +KE + + TH H DH G
Sbjct: 132 TYTYLLGDRESREAILIDP----VLETAHRDAQLVKELGLRLLYAVNTHCHADHITG-SG 186
Query: 328 ICKSISNDTTYCIKKLPRHPERKEVIGDGEQQYVYVKDGDVIKTEGATLRVIYTPGHTDD 507
+ +S+ I +L G Q ++++DGD I+ L +PGHT
Sbjct: 187 LLRSLLPGCQSVISRL-----------SGAQADLHIEDGDSIRFGRFALETRASPGHTPG 235
Query: 508 HMALLLEEENAVFSGDCIL--GEGTTIFE 588
+ +L +++ F+GD +L G G T F+
Sbjct: 236 CVTFVLNDQSMAFTGDALLIRGCGRTDFQ 264
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,757,361
Number of extensions: 628369
Number of successful extensions: 1650
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1646
Number of HSP's successfully gapped: 3
Length of query: 300
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 202
Effective length of database: 8,904,026
Effective search space: 1798613252
Effective search space used: 1798613252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009230
(901 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663356.1| beta-lactamase-like protein 2 [Mus musculus]. 454 e-128
Alignment gi|NP_001034598.1| probable hydrolase PNKD isoform 3 [Mus muscu... 49 7e-06
Alignment gi|NP_064383.1| probable hydrolase PNKD isoform 1 [Mus musculus]. 49 7e-06
>ref|NP_663356.1| beta-lactamase-like protein 2 [Mus musculus].
Length = 288
Score = 454 bits (1167), Expect = e-128
Identities = 215/277 (77%), Positives = 247/277 (89%)
Frame = +1
Query: 64 MAAVLQRIERLSSRVIRVLGCNPGPMTLQGTNTYLVGTGPRRILIDTGEPAIPEYISCLK 243
MAA LQRIE+LSSRV+RVLGCNPGPMTLQGTNTYLVGTG RRILIDTGEP++PEYISCLK
Sbjct: 1 MAAALQRIEQLSSRVVRVLGCNPGPMTLQGTNTYLVGTGSRRILIDTGEPSVPEYISCLK 60
Query: 244 QALKEFNTAIQEIIVTHWHRDHSGGIEDICKSISNDTTYCIKKLPRHPERKEVIGDGEQQ 423
QAL EF+TAIQEI+VTHWH DHSGGI DICK+I+NDTTYCIKKL R+P+R+E+IG+GEQQ
Sbjct: 61 QALVEFDTAIQEILVTHWHSDHSGGIVDICKNINNDTTYCIKKLRRNPQREEIIGNGEQQ 120
Query: 424 YVYVKDGDVIKTEGATLRVIYTPGHTDDHMALLLEEENAVFSGDCILGEGTTIFEDLYDY 603
++Y+++GDV+KTEGATLRV+YTPGHTDDHMALLLEEENA+FSGDCILGEGTTIFEDLYDY
Sbjct: 121 FIYIENGDVVKTEGATLRVLYTPGHTDDHMALLLEEENAIFSGDCILGEGTTIFEDLYDY 180
Query: 604 MNSLKNLLKVKANVIYPGHGPVIHNAEAKILEYISHRNIREQQILTVFDENFGKSFTAME 783
MNSL NLLK+KAN+IYPGHGPVIHNAEAKILEYISHRN RE+QI+++F +NF KSFT E
Sbjct: 181 MNSLNNLLKIKANIIYPGHGPVIHNAEAKILEYISHRNNREEQIISLFRDNFEKSFTVTE 240
Query: 784 LVKMIYQNIPEHLHKMAXXXXXXXXXXXXXMGKYFST 894
L MIY+++PE+LHKMA GK F T
Sbjct: 241 LRTMIYKDVPENLHKMAEHNLLLHLRKLEKDGKIFYT 277
>ref|NP_001034598.1| probable hydrolase PNKD isoform 3 [Mus musculus].
Length = 385
Score = 48.5 bits (114), Expect = 7e-06
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 12/169 (7%)
Frame = +1
Query: 190 ILIDTGEPAIPEYISCLKQALKEFNTAIQEIIVTHWHRDHSGGIEDICKSISNDTTYCIK 369
+ +D +P ++ ++++ + I+ TH H DHSGG D+ +
Sbjct: 144 VAVDPSDPR------AVQASIEKERVNLVAILCTHKHWDHSGGNRDLSR----------- 186
Query: 370 KLPRHPERKEVIGDGEQQYVYVKDG----DVIKTEGATLRVIYTPGHTDDHMALLLEEE- 534
RH + + V G + Y+ DV+ +R + TPGHT H+ LL+ E
Sbjct: 187 ---RHRDCR-VYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALATPGHTQGHLVYLLDGEP 242
Query: 535 ----NAVFSGDCIL--GEGTTIFEDLYDYMNSLKNLLKV-KANVIYPGH 660
+ +FSGD + G G T ++SL +L + +++PGH
Sbjct: 243 YKGPSCLFSGDLLFLSGCGRTFEGTAETMLSSLDTVLDLGDDTLLWPGH 291
>ref|NP_064383.1| probable hydrolase PNKD isoform 1 [Mus musculus].
Length = 360
Score = 48.5 bits (114), Expect = 7e-06
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 12/169 (7%)
Frame = +1
Query: 190 ILIDTGEPAIPEYISCLKQALKEFNTAIQEIIVTHWHRDHSGGIEDICKSISNDTTYCIK 369
+ +D +P ++ ++++ + I+ TH H DHSGG D+ +
Sbjct: 119 VAVDPSDPR------AVQASIEKERVNLVAILCTHKHWDHSGGNRDLSR----------- 161
Query: 370 KLPRHPERKEVIGDGEQQYVYVKDG----DVIKTEGATLRVIYTPGHTDDHMALLLEEE- 534
RH + + V G + Y+ DV+ +R + TPGHT H+ LL+ E
Sbjct: 162 ---RHRDCR-VYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALATPGHTQGHLVYLLDGEP 217
Query: 535 ----NAVFSGDCIL--GEGTTIFEDLYDYMNSLKNLLKV-KANVIYPGH 660
+ +FSGD + G G T ++SL +L + +++PGH
Sbjct: 218 YKGPSCLFSGDLLFLSGCGRTFEGTAETMLSSLDTVLDLGDDTLLWPGH 266
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,799,481
Number of extensions: 835460
Number of successful extensions: 2066
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2059
Number of HSP's successfully gapped: 3
Length of query: 300
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 199
Effective length of database: 12,583,923
Effective search space: 2504200677
Effective search space used: 2504200677
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009230
(901 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057111.1| beta-lactamase-like protein 2 [Homo sapiens]. 481 e-136
Alignment gi|NP_056303.3| probable hydrolase PNKD isoform 1 precursor [Ho... 50 4e-06
Alignment gi|NP_072094.1| probable hydrolase PNKD isoform 2 [Homo sapiens]. 50 4e-06
>ref|NP_057111.1| beta-lactamase-like protein 2 [Homo sapiens].
Length = 288
Score = 481 bits (1238), Expect = e-136
Identities = 230/276 (83%), Positives = 253/276 (91%)
Frame = +1
Query: 64 MAAVLQRIERLSSRVIRVLGCNPGPMTLQGTNTYLVGTGPRRILIDTGEPAIPEYISCLK 243
MAAVLQR+ERLS+RV+RVLGCNPGPMTLQGTNTYLVGTGPRRILIDTGEPAIPEYISCLK
Sbjct: 1 MAAVLQRVERLSNRVVRVLGCNPGPMTLQGTNTYLVGTGPRRILIDTGEPAIPEYISCLK 60
Query: 244 QALKEFNTAIQEIIVTHWHRDHSGGIEDICKSISNDTTYCIKKLPRHPERKEVIGDGEQQ 423
QAL EFNTAIQEI+VTHWHRDHSGGI DICKSI+NDTTYCIKKLPR+P+R+E+IG+GEQQ
Sbjct: 61 QALTEFNTAIQEIVVTHWHRDHSGGIGDICKSINNDTTYCIKKLPRNPQREEIIGNGEQQ 120
Query: 424 YVYVKDGDVIKTEGATLRVIYTPGHTDDHMALLLEEENAVFSGDCILGEGTTIFEDLYDY 603
YVY+KDGDVIKTEGATLRV+YTPGHTDDHMALLLEEENA+FSGDCILGEGTT+FEDLYDY
Sbjct: 121 YVYLKDGDVIKTEGATLRVLYTPGHTDDHMALLLEEENAIFSGDCILGEGTTVFEDLYDY 180
Query: 604 MNSLKNLLKVKANVIYPGHGPVIHNAEAKILEYISHRNIREQQILTVFDENFGKSFTAME 783
MNSLK LLK+KA++IYPGHGPVIHNAEAKI +YISHRNIREQQILT+F ENF KSFT ME
Sbjct: 181 MNSLKELLKIKADIIYPGHGPVIHNAEAKIQQYISHRNIREQQILTLFRENFEKSFTVME 240
Query: 784 LVKMIYQNIPEHLHKMAXXXXXXXXXXXXXMGKYFS 891
LVK+IY+N PE+LH+MA GK FS
Sbjct: 241 LVKIIYKNTPENLHEMAKHNLLLHLKKLEKEGKIFS 276
>ref|NP_056303.3| probable hydrolase PNKD isoform 1 precursor [Homo sapiens].
Length = 385
Score = 49.7 bits (117), Expect = 4e-06
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 12/169 (7%)
Frame = +1
Query: 190 ILIDTGEPAIPEYISCLKQALKEFNTAIQEIIVTHWHRDHSGGIEDICKSISNDTTYCIK 369
+ +D +P ++ ++++ + I+ TH H DHSGG D+ +
Sbjct: 144 VAVDPSDPR------AVQASIEKEGVTLVAILCTHKHWDHSGGNRDLSR----------- 186
Query: 370 KLPRHPERKEVIGDGEQQYVYVKDG----DVIKTEGATLRVIYTPGHTDDHMALLLEEE- 534
RH + + V G + Y+ DV+ +R + TPGHT H+ LL+ E
Sbjct: 187 ---RHRDCR-VYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALATPGHTQGHLVYLLDGEP 242
Query: 535 ----NAVFSGDCIL--GEGTTIFEDLYDYMNSLKNLLKV-KANVIYPGH 660
+ +FSGD + G G T + ++SL +L + +++PGH
Sbjct: 243 YKGPSCLFSGDLLFLSGCGRTFEGNAETMLSSLDTVLGLGDDTLLWPGH 291
>ref|NP_072094.1| probable hydrolase PNKD isoform 2 [Homo sapiens].
Length = 361
Score = 49.7 bits (117), Expect = 4e-06
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 12/169 (7%)
Frame = +1
Query: 190 ILIDTGEPAIPEYISCLKQALKEFNTAIQEIIVTHWHRDHSGGIEDICKSISNDTTYCIK 369
+ +D +P ++ ++++ + I+ TH H DHSGG D+ +
Sbjct: 120 VAVDPSDPR------AVQASIEKEGVTLVAILCTHKHWDHSGGNRDLSR----------- 162
Query: 370 KLPRHPERKEVIGDGEQQYVYVKDG----DVIKTEGATLRVIYTPGHTDDHMALLLEEE- 534
RH + + V G + Y+ DV+ +R + TPGHT H+ LL+ E
Sbjct: 163 ---RHRDCR-VYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALATPGHTQGHLVYLLDGEP 218
Query: 535 ----NAVFSGDCIL--GEGTTIFEDLYDYMNSLKNLLKV-KANVIYPGH 660
+ +FSGD + G G T + ++SL +L + +++PGH
Sbjct: 219 YKGPSCLFSGDLLFLSGCGRTFEGNAETMLSSLDTVLGLGDDTLLWPGH 267
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,263,004
Number of extensions: 995685
Number of successful extensions: 2637
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2628
Number of HSP's successfully gapped: 3
Length of query: 300
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 198
Effective length of database: 14,934,836
Effective search space: 2957097528
Effective search space used: 2957097528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009230
(901 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 367 7e-99
>Sscrofa_Chr04
|| Length = 143465943
Score = 367 bits (185), Expect = 7e-99
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 2 gttgcttggtgcgcaccccagccggcctgccagccccgtgccagtaagcggcagtggtag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70341257 gttgcttggtgcgcaccccagccggcctgccagccccgtgccagtaagcggcagtggtag 70341316
Query: 62 atatggctgctgtcctgcagcgcattgaacggctgtccagtcgggtgattcgcgtcctgg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70341317 atatggctgctgtcctgcagcgcattgaacggctgtccagtcgggtgattcgcgtcctgg 70341376
Query: 122 gctgtaacccgggtcccatgactctgcagggcaccaacacctacttggtggggaccggcc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70341377 gctgtaacccgggtcccatgactctgcagggcaccaacacctacttggtggggaccggcc 70341436
Query: 182 ccagg 186
|||||
Sbjct: 70341437 ccagg 70341441
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 476 gagttatatacacacctggccacactgatgatcatatggccctgcttttggaagaagaaa 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70371477 gagttatatacacacctggccacactgatgatcatatggccctgcttttggaagaagaaa 70371536
Query: 536 atgccgtcttttctggagattgcatcctgggggaaggaacaactatatttgaagacctct 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70371537 atgccgtcttttctggagattgcatcctgggggaaggaacaactatatttgaagacctct 70371596
Query: 596 atgattatatgaattccctgaaaaacttattaaaagtcaaagctaatgttatatatccag 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70371597 atgattatatgaattccctgaaaaacttattaaaagtcaaagctaatgttatatatccag 70371656
Query: 656 g 656
|
Sbjct: 70371657 g 70371657
Score = 331 bits (167), Expect = 4e-88
Identities = 167/167 (100%)
Strand = Plus / Plus
Query: 183 caggagaatcctcattgacactggagaaccagccattccagaatatatcagctgtttaaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70348720 caggagaatcctcattgacactggagaaccagccattccagaatatatcagctgtttaaa 70348779
Query: 243 gcaggcgctgaaggaatttaacacagcgatccaggaaatcatagtgactcactggcaccg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70348780 gcaggcgctgaaggaatttaacacagcgatccaggaaatcatagtgactcactggcaccg 70348839
Query: 303 tgatcatagtggaggcatagaagatatttgtaaaagcatcagtaatg 349
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70348840 tgatcatagtggaggcatagaagatatttgtaaaagcatcagtaatg 70348886
Score = 293 bits (148), Expect = 8e-77
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 654 aggacatggcccagtaatccacaatgctgaagctaaaattctagaatacatttctcatag 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70374771 aggacatggcccagtaatccacaatgctgaagctaaaattctagaatacatttctcatag 70374830
Query: 714 aaatatccgagaacagcaaattcttacggtatttgacgagaactttggaaagtcattcac 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70374831 aaatatccgagaacagcaaattcttacggtatttgacgagaactttggaaagtcattcac 70374890
Query: 774 agcaatggagcttgtaaaaatgatttac 801
||||||||||||||||||||||||||||
Sbjct: 70374891 agcaatggagcttgtaaaaatgatttac 70374918
Score = 254 bits (128), Expect = 7e-65
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 349 gacactacatactgcattaaaaaactcccccggcatcctgagagaaaagaagttattgga 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70355455 gacactacatactgcattaaaaaactcccccggcatcctgagagaaaagaagttattgga 70355514
Query: 409 gatggagagcaacagtatgtttatgtgaaagatggagatgtgattaagactgagggcgcc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70355515 gatggagagcaacagtatgtttatgtgaaagatggagatgtgattaagactgagggcgcc 70355574
Query: 469 actcttcg 476
||||||||
Sbjct: 70355575 actcttcg 70355582
Score = 127 bits (64), Expect = 1e-26
Identities = 80/84 (95%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 803 agaatattcctgagcatttacataaaatggccaaaaaacatgtcttgcttcatttg-aaa 861
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 70377786 agaatattcctgagcatttacataaaatggccaaaaacaatgtcttgcttcatttgaaaa 70377845
Query: 862 aatttgaaaaagatgggaaaatat 885
|||| |||||||||||||||||||
Sbjct: 70377846 aattagaaaaagatgggaaaatat 70377869
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,751,312
Number of extensions: 242
Number of successful extensions: 242
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 6
Length of query: 901
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 880
Effective length of database: 2,808,413,156
Effective search space: 2471403577280
Effective search space used: 2471403577280
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)