Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009257
(992 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179096.1| solute carrier family 28 member 3 [Bos tauru... 401 e-112
Alignment gi|XP_002689855.1| PREDICTED: solute carrier family 28 (sodium-... 401 e-112
Alignment gi|XP_002690952.1| PREDICTED: solute carrier family 28 (sodium-... 131 8e-31
Alignment gi|XP_610426.3| PREDICTED: solute carrier family 28 (sodium-cou... 131 8e-31
Alignment gi|NP_001032535.1| sodium/nucleoside cotransporter 1 [Bos tauru... 127 1e-29
>ref|NP_001179096.1| solute carrier family 28 member 3 [Bos taurus].
Length = 697
Score = 401 bits (1030), Expect = e-112
Identities = 200/289 (69%), Positives = 220/289 (76%), Gaps = 1/289 (0%)
Frame = +1
Query: 127 MSSKNSVELQRMVALRDEGCRNPGFQNDEICVESQNTSGNDNSLRSRVVQNREDENGKQD 306
MSSK SVELQR+ AL +GC N GFQNDE E+QN SGND+SLR+RVVQNRE ENGKQ
Sbjct: 1 MSSKISVELQRVAALPAQGCSNTGFQNDEDGFENQNPSGNDHSLRNRVVQNREHENGKQV 60
Query: 307 EEQVTIXXXXXXXXXXXXXXX-THQKGCLENKCGTVYDFYREHKTTLQYILRGILLAGYL 483
EE +TI TH+KGCLE CG + DF REHKTTL+YI+ GIL+AGYL
Sbjct: 61 EEHITIGQDSLRKDEEEEDDQETHRKGCLERMCGRMSDFCREHKTTLRYIIWGILIAGYL 120
Query: 484 ALVIAACVLNFHRALPLXXXXXXXXXXXXWDRFMAKYESQIDKFLSPGRKLLDSHWFWLK 663
ALVIAACV+NFHRALPL WD MAKYESQI +FLSPG++LLDSHWFWLK
Sbjct: 121 ALVIAACVMNFHRALPLFVITVVAIFFVVWDHLMAKYESQIARFLSPGQRLLDSHWFWLK 180
Query: 664 WVTWGSLILGVILWLIFDTAKLGQQQLVSFGGLIMYISLTFLFSKHPTKVSWRPVFWXXX 843
WV WG LILGVILWL+FDTAKLGQQQLVSFGGLI+Y SLTFLFSKHPTKV WRPVFW
Sbjct: 181 WVIWGCLILGVILWLVFDTAKLGQQQLVSFGGLIIYTSLTFLFSKHPTKVYWRPVFWGIG 240
Query: 844 XXXXXXXXXXRTKPGFIAFDWLGKQVQTFLEYTDAGALFVFGEKYTDHF 990
RT+PGF+AFDWLGKQVQTFL Y+DAGA FVFGEKYTDHF
Sbjct: 241 LQFLLGLLILRTEPGFMAFDWLGKQVQTFLGYSDAGASFVFGEKYTDHF 289
>ref|XP_002689855.1| PREDICTED: solute carrier family 28 (sodium-coupled nucleoside
transporter), member 3 [Bos taurus].
Length = 697
Score = 401 bits (1030), Expect = e-112
Identities = 200/289 (69%), Positives = 220/289 (76%), Gaps = 1/289 (0%)
Frame = +1
Query: 127 MSSKNSVELQRMVALRDEGCRNPGFQNDEICVESQNTSGNDNSLRSRVVQNREDENGKQD 306
MSSK SVELQR+ AL +GC N GFQNDE E+QN SGND+SLR+RVVQNRE ENGKQ
Sbjct: 1 MSSKISVELQRVAALPAQGCSNTGFQNDEDGFENQNPSGNDHSLRNRVVQNREHENGKQV 60
Query: 307 EEQVTIXXXXXXXXXXXXXXX-THQKGCLENKCGTVYDFYREHKTTLQYILRGILLAGYL 483
EE +TI TH+KGCLE CG + DF REHKTTL+YI+ GIL+AGYL
Sbjct: 61 EEHITIGQDSLRKDEEEEDDQETHRKGCLERMCGRMSDFCREHKTTLRYIIWGILIAGYL 120
Query: 484 ALVIAACVLNFHRALPLXXXXXXXXXXXXWDRFMAKYESQIDKFLSPGRKLLDSHWFWLK 663
ALVIAACV+NFHRALPL WD MAKYESQI +FLSPG++LLDSHWFWLK
Sbjct: 121 ALVIAACVMNFHRALPLFVITVVAIFFVVWDHLMAKYESQIARFLSPGQRLLDSHWFWLK 180
Query: 664 WVTWGSLILGVILWLIFDTAKLGQQQLVSFGGLIMYISLTFLFSKHPTKVSWRPVFWXXX 843
WV WG LILGVILWL+FDTAKLGQQQLVSFGGLI+Y SLTFLFSKHPTKV WRPVFW
Sbjct: 181 WVIWGCLILGVILWLVFDTAKLGQQQLVSFGGLIIYTSLTFLFSKHPTKVYWRPVFWGIG 240
Query: 844 XXXXXXXXXXRTKPGFIAFDWLGKQVQTFLEYTDAGALFVFGEKYTDHF 990
RT+PGF+AFDWLGKQVQTFL Y+DAGA FVFGEKYTDHF
Sbjct: 241 LQFLLGLLILRTEPGFMAFDWLGKQVQTFLGYSDAGASFVFGEKYTDHF 289
>ref|XP_002690952.1| PREDICTED: solute carrier family 28 (sodium-coupled nucleoside
transporter), member 2 [Bos taurus].
Length = 733
Score = 131 bits (330), Expect = 8e-31
Identities = 75/186 (40%), Positives = 100/186 (53%), Gaps = 1/186 (0%)
Frame = +1
Query: 418 FYREHKTTLQYILRGILLAGYLALVIAACVLNFHRALPLXXXXXXXXXXXXWDRFMAKYE 597
F + H + IL +L Y A +AAC+L+FHRAL L +
Sbjct: 143 FCKTHAGLFKKILLSLLCLAYAAYFLAACILDFHRALALFVLTCLVLLVLVHRFLKRLFG 202
Query: 598 SQIDKFLSPGRKLLDSHW-FWLKWVTWGSLILGVILWLIFDTAKLGQQQLVSFGGLIMYI 774
++ + L P L +S FW+KWV G ++G+ILWL DTA+ +QL+SF G+ M+I
Sbjct: 203 EKLTRCLKP---LENSRLKFWMKWVLAGVSLIGLILWLALDTAQR-PEQLISFAGICMFI 258
Query: 775 SLTFLFSKHPTKVSWRPVFWXXXXXXXXXXXXXRTKPGFIAFDWLGKQVQTFLEYTDAGA 954
+ F SKH + VSWR V W RT PGF AF WLG+QVQ FL YT AG+
Sbjct: 259 IILFACSKHHSAVSWRAVLWGLGLQFVFGILVIRTDPGFNAFQWLGEQVQIFLSYTVAGS 318
Query: 955 LFVFGE 972
FVFG+
Sbjct: 319 SFVFGD 324
>ref|XP_610426.3| PREDICTED: solute carrier family 28 (sodium-coupled nucleoside
transporter), member 2 [Bos taurus].
Length = 733
Score = 131 bits (330), Expect = 8e-31
Identities = 75/186 (40%), Positives = 100/186 (53%), Gaps = 1/186 (0%)
Frame = +1
Query: 418 FYREHKTTLQYILRGILLAGYLALVIAACVLNFHRALPLXXXXXXXXXXXXWDRFMAKYE 597
F + H + IL +L Y A +AAC+L+FHRAL L +
Sbjct: 143 FCKTHAGLFKKILLSLLCLAYAAYFLAACILDFHRALALFVLTCLVLLVLVHRFLKRLFG 202
Query: 598 SQIDKFLSPGRKLLDSHW-FWLKWVTWGSLILGVILWLIFDTAKLGQQQLVSFGGLIMYI 774
++ + L P L +S FW+KWV G ++G+ILWL DTA+ +QL+SF G+ M+I
Sbjct: 203 EKLTRCLKP---LENSRLKFWMKWVLAGVSLIGLILWLALDTAQR-PEQLISFAGICMFI 258
Query: 775 SLTFLFSKHPTKVSWRPVFWXXXXXXXXXXXXXRTKPGFIAFDWLGKQVQTFLEYTDAGA 954
+ F SKH + VSWR V W RT PGF AF WLG+QVQ FL YT AG+
Sbjct: 259 IILFACSKHHSAVSWRAVLWGLGLQFVFGILVIRTDPGFNAFQWLGEQVQIFLSYTVAGS 318
Query: 955 LFVFGE 972
FVFG+
Sbjct: 319 SFVFGD 324
>ref|NP_001032535.1| sodium/nucleoside cotransporter 1 [Bos taurus].
Length = 649
Score = 127 bits (320), Expect = 1e-29
Identities = 73/189 (38%), Positives = 98/189 (51%), Gaps = 1/189 (0%)
Frame = +1
Query: 409 VYDFYREHKTTLQYILRGILLAGYLALVIAACVLNFHRALPLXXXXXXXXXXXXWDRFMA 588
V F REH ++I G+L Y A ++AAC+LNF RAL L
Sbjct: 72 VRHFCREHAQLFRWICIGLLCTAYTAFLLAACILNFQRALALFVLTCVVLVFLAHSLLKR 131
Query: 589 KYESQIDKFLSP-GRKLLDSHWFWLKWVTWGSLILGVILWLIFDTAKLGQQQLVSFGGLI 765
++ + + P G L W K + LG++LWL DT++ +QLVSFGG+
Sbjct: 132 LLGPKLLRCVKPLGHPCLK---LWFKRGLALAAFLGLVLWLALDTSQR-PEQLVSFGGIC 187
Query: 766 MYISLTFLFSKHPTKVSWRPVFWXXXXXXXXXXXXXRTKPGFIAFDWLGKQVQTFLEYTD 945
+++ F SKH VSWR VFW RT+PGFIAF WLG Q+Q FL YT+
Sbjct: 188 VFVGFLFAVSKHHRAVSWRAVFWGLGLQFVLGLVVIRTEPGFIAFQWLGDQIQIFLSYTE 247
Query: 946 AGALFVFGE 972
+G+ FVFGE
Sbjct: 248 SGSSFVFGE 256
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,974,981
Number of extensions: 913564
Number of successful extensions: 3022
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3012
Number of HSP's successfully gapped: 5
Length of query: 330
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,273,310
Effective search space: 3240041370
Effective search space used: 3240041370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009257
(992 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849604.1| PREDICTED: similar to concentrative Na+-nucleos... 281 5e-76
Alignment gi|XP_852022.1| PREDICTED: similar to solute carrier family 28 ... 121 1e-27
Alignment gi|XP_533508.1| PREDICTED: similar to concentrative Na+-nucleos... 86 7e-17
>ref|XP_849604.1| PREDICTED: similar to concentrative Na+-nucleoside cotransporter
[Canis familiaris].
Length = 650
Score = 281 bits (720), Expect = 5e-76
Identities = 135/200 (67%), Positives = 150/200 (75%)
Frame = +1
Query: 388 LENKCGTVYDFYREHKTTLQYILRGILLAGYLALVIAACVLNFHRALPLXXXXXXXXXXX 567
LE K TV DFY++HKT QYI+ GIL+ GYLA+VIAACVLNF RAL L
Sbjct: 42 LERKYDTVCDFYKKHKTIFQYIIWGILILGYLAMVIAACVLNFQRALALFVITVAAIFFV 101
Query: 568 XWDRFMAKYESQIDKFLSPGRKLLDSHWFWLKWVTWGSLILGVILWLIFDTAKLGQQQLV 747
WD FMAKYE QID+ LSP + LL+SHWFW+KWV W LILGVILWLIFDTAKLGQQQL+
Sbjct: 102 IWDYFMAKYEHQIDECLSPAKGLLNSHWFWMKWVVWSLLILGVILWLIFDTAKLGQQQLI 161
Query: 748 SFGGLIMYISLTFLFSKHPTKVSWRPVFWXXXXXXXXXXXXXRTKPGFIAFDWLGKQVQT 927
SFGGL+MYI L FLFSKHPTKV WRPVFW RT PGF+AFDWLG+QVQT
Sbjct: 162 SFGGLVMYIILVFLFSKHPTKVYWRPVFWGIGLQFLLGLLILRTDPGFMAFDWLGQQVQT 221
Query: 928 FLEYTDAGALFVFGEKYTDH 987
FLEYT+AGA FVFG+ Y DH
Sbjct: 222 FLEYTNAGAEFVFGDTYADH 241
>ref|XP_852022.1| PREDICTED: similar to solute carrier family 28 (sodium-coupled
nucleoside transporter), member 1 [Canis familiaris].
Length = 753
Score = 121 bits (303), Expect = 1e-27
Identities = 72/186 (38%), Positives = 97/186 (52%), Gaps = 1/186 (0%)
Frame = +1
Query: 418 FYREHKTTLQYILRGILLAGYLALVIAACVLNFHRALPLXXXXXXXXXXXXWDRFMAKYE 597
F REH Q+I G+L + A ++ A +L+F RAL L
Sbjct: 176 FCREHAQLFQWICTGLLSTAFAAFLLTAGLLDFQRALALFVLTCVVLTFLAHSLLRRLLG 235
Query: 598 SQIDKFLSP-GRKLLDSHWFWLKWVTWGSLILGVILWLIFDTAKLGQQQLVSFGGLIMYI 774
++ + + P G L FW++ + LG+ILWLI DT++ +QLVSF G+ ++I
Sbjct: 236 PRLLRCVKPLGHCRLS---FWVERGLALTAFLGLILWLILDTSQR-PEQLVSFAGICVFI 291
Query: 775 SLTFLFSKHPTKVSWRPVFWXXXXXXXXXXXXXRTKPGFIAFDWLGKQVQTFLEYTDAGA 954
L F SKH VSWR VFW RT+PGFIAF W+G Q+Q FL YTD G+
Sbjct: 292 GLLFACSKHHYAVSWRAVFWGLGLQFVLGLFVIRTEPGFIAFQWMGNQIQIFLSYTDVGS 351
Query: 955 LFVFGE 972
FVFGE
Sbjct: 352 SFVFGE 357
>ref|XP_533508.1| PREDICTED: similar to concentrative Na+-nucleoside cotransporter
[Canis familiaris].
Length = 94
Score = 85.5 bits (210), Expect = 7e-17
Identities = 48/87 (55%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Frame = +1
Query: 127 MSSKNSVELQRMVALRDEGCRNPGFQNDEICVESQNTSGNDNSLRSRVVQNREDENGKQD 306
MSS++ VEL M R EGC N GFQNDE E+QNTSGN+NSLR RV + RE EN KQD
Sbjct: 1 MSSRDFVELTGMTTPRAEGCSNTGFQNDEDLDENQNTSGNNNSLRCRVSKGREHENAKQD 60
Query: 307 EEQVTI-XXXXXXXXXXXXXXXTHQKG 384
EEQ+TI THQKG
Sbjct: 61 EEQITIEQDSLRNKEDMEDDPETHQKG 87
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,495,860
Number of extensions: 940536
Number of successful extensions: 3228
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3224
Number of HSP's successfully gapped: 3
Length of query: 330
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 227
Effective length of database: 15,440,896
Effective search space: 3505083392
Effective search space used: 3505083392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009257
(992 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130696.2| PREDICTED: solute carrier family 28 member 3... 452 e-127
Alignment gi|NP_999277.1| sodium/nucleoside cotransporter 1 [Sus scrofa]. 124 1e-28
Alignment gi|XP_003121601.2| PREDICTED: sodium/nucleoside cotransporter 1... 121 5e-28
>ref|XP_003130696.2| PREDICTED: solute carrier family 28 member 3-like [Sus scrofa].
Length = 457
Score = 452 bits (1164), Expect = e-127
Identities = 225/272 (82%), Positives = 226/272 (83%)
Frame = +1
Query: 175 DEGCRNPGFQNDEICVESQNTSGNDNSLRSRVVQNREDENGKQDEEQVTIXXXXXXXXXX 354
D GC +NDEICVESQNTSGNDNSLRSRVVQNREDENGKQDEEQVTI
Sbjct: 43 DGGCG----KNDEICVESQNTSGNDNSLRSRVVQNREDENGKQDEEQVTIEEDSPRKEEE 98
Query: 355 XXXXXTHQKGCLENKCGTVYDFYREHKTTLQYILRGILLAGYLALVIAACVLNFHRALPL 534
THQKGCLENKCGTVYDFYREHKTTLQYILRGILLAGYLALVIAACVLNFHRALPL
Sbjct: 99 EEDQETHQKGCLENKCGTVYDFYREHKTTLQYILRGILLAGYLALVIAACVLNFHRALPL 158
Query: 535 XXXXXXXXXXXXWDRFMAKYESQIDKFLSPGRKLLDSHWFWLKWVTWGSLILGVILWLIF 714
WDRFMAKYESQIDKFLSPGRKLLDSHWFWLKWVTWGSLILGVILWLIF
Sbjct: 159 FVITVVVIFFVVWDRFMAKYESQIDKFLSPGRKLLDSHWFWLKWVTWGSLILGVILWLIF 218
Query: 715 DTAKLGQQQLVSFGGLIMYISLTFLFSKHPTKVSWRPVFWXXXXXXXXXXXXXRTKPGFI 894
DTAKLGQQQLVSFGGLIMYISLTFLFSKHPTKVSWRPVFW RTKPGFI
Sbjct: 219 DTAKLGQQQLVSFGGLIMYISLTFLFSKHPTKVSWRPVFWGIGLQFLLGLLILRTKPGFI 278
Query: 895 AFDWLGKQVQTFLEYTDAGALFVFGEKYTDHF 990
AFDWLGKQVQTFLEYTDAGALFVFGEKYTDHF
Sbjct: 279 AFDWLGKQVQTFLEYTDAGALFVFGEKYTDHF 310
>ref|NP_999277.1| sodium/nucleoside cotransporter 1 [Sus scrofa].
Length = 647
Score = 124 bits (310), Expect = 1e-28
Identities = 72/185 (38%), Positives = 98/185 (52%)
Frame = +1
Query: 418 FYREHKTTLQYILRGILLAGYLALVIAACVLNFHRALPLXXXXXXXXXXXXWDRFMAKYE 597
F REH ++I G+L + A ++ AC+L+F RAL L
Sbjct: 73 FCREHTQLFRWICTGLLCTAFAAFLLIACLLDFQRALALFVLFCVVLFFLAHSLLKRLLG 132
Query: 598 SQIDKFLSPGRKLLDSHWFWLKWVTWGSLILGVILWLIFDTAKLGQQQLVSFGGLIMYIS 777
++ + + P R + WF K + LG++LWL+ DTA+ +QLVSFGG+ ++I
Sbjct: 133 PKLLRCVKPLRHPCLNLWF--KRGLALAAFLGLVLWLVLDTAQR-PEQLVSFGGICVFIL 189
Query: 778 LTFLFSKHPTKVSWRPVFWXXXXXXXXXXXXXRTKPGFIAFDWLGKQVQTFLEYTDAGAL 957
L F SKH VSWR V W RT+PGFIAF WLG Q+Q FL YT+AG+
Sbjct: 190 LLFAGSKHHRAVSWRAVSWGLGLQFALGLFVIRTEPGFIAFQWLGDQIQIFLSYTEAGSS 249
Query: 958 FVFGE 972
FVFGE
Sbjct: 250 FVFGE 254
>ref|XP_003121601.2| PREDICTED: sodium/nucleoside cotransporter 1-like [Sus scrofa].
Length = 672
Score = 121 bits (304), Expect = 5e-28
Identities = 70/185 (37%), Positives = 95/185 (51%)
Frame = +1
Query: 418 FYREHKTTLQYILRGILLAGYLALVIAACVLNFHRALPLXXXXXXXXXXXXWDRFMAKYE 597
F + H + IL +L Y A ++ AC+LNF RAL L +
Sbjct: 88 FCKTHAGLFKKILLSLLCVAYAAYLLTACILNFQRALALFVLTCLVLLVVVYRILKRFCG 147
Query: 598 SQIDKFLSPGRKLLDSHWFWLKWVTWGSLILGVILWLIFDTAKLGQQQLVSFGGLIMYIS 777
+I + L P + W+K V G+ ++G+ILWL DTA+ +QL+SF G+ M+I
Sbjct: 148 KKITRCLKPLKNSCLK--LWMKRVFAGASLVGLILWLALDTAQR-PEQLISFAGICMFIL 204
Query: 778 LTFLFSKHPTKVSWRPVFWXXXXXXXXXXXXXRTKPGFIAFDWLGKQVQTFLEYTDAGAL 957
+ F SKH + VSWR V W RT PGF AF WLG Q+Q FL YT AG+
Sbjct: 205 ILFACSKHHSAVSWRAVLWGLGLQFVFGILVIRTDPGFNAFQWLGDQIQIFLHYTVAGSS 264
Query: 958 FVFGE 972
FVFG+
Sbjct: 265 FVFGD 269
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,160,612
Number of extensions: 586109
Number of successful extensions: 2078
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2071
Number of HSP's successfully gapped: 3
Length of query: 330
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,879,129
Effective search space: 2051078799
Effective search space used: 2051078799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009257
(992 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071712.3| solute carrier family 28 member 3 [Mus musculus]. 315 3e-86
Alignment gi|NP_001078987.1| solute carrier family 28 (sodium-coupled nuc... 124 1e-28
Alignment gi|NP_766568.1| sodium/nucleoside cotransporter 2 [Mus musculus]. 122 4e-28
Alignment gi|NP_001004184.2| solute carrier family 28, member 1 [Mus musc... 122 6e-28
>ref|NP_071712.3| solute carrier family 28 member 3 [Mus musculus].
Length = 703
Score = 315 bits (807), Expect = 3e-86
Identities = 162/288 (56%), Positives = 193/288 (67%), Gaps = 2/288 (0%)
Frame = +1
Query: 133 SKNSVELQRMVALRDEGCRNPGFQNDEICVESQNTSGNDNSLRSRVVQNREDENGKQDEE 312
SK S+EL R A D G N FQ++++ E QNT GN +++R+RVVQ+ E + KQD+
Sbjct: 15 SKMSLEL-RPTAPSDLGRSNEAFQDEDL--ERQNTPGN-STVRNRVVQSGEQGHAKQDDR 70
Query: 313 QVTIXXXXXXXXXXXXXXXT--HQKGCLENKCGTVYDFYREHKTTLQYILRGILLAGYLA 486
Q+TI HQKG LE K T+ +F R+H+ L+ + +LL G+LA
Sbjct: 71 QITIEQEPLGNKEDPEDDSEDEHQKGFLERKYDTICEFCRKHRVVLRSTIWAVLLTGFLA 130
Query: 487 LVIAACVLNFHRALPLXXXXXXXXXXXXWDRFMAKYESQIDKFLSPGRKLLDSHWFWLKW 666
LVIAAC +NFHRALPL WD MAKYE +ID FLSPGR+LLD HWFWLKW
Sbjct: 131 LVIAACAINFHRALPLFVITLVTIFFVIWDHLMAKYEQRIDDFLSPGRRLLDRHWFWLKW 190
Query: 667 VTWGSLILGVILWLIFDTAKLGQQQLVSFGGLIMYISLTFLFSKHPTKVSWRPVFWXXXX 846
V W SLIL +ILWL DTAKLGQQ LVSFGGLIMY+ L FLFSKHPT+V WRPVFW
Sbjct: 191 VVWSSLILAIILWLSLDTAKLGQQNLVSFGGLIMYLILLFLFSKHPTRVYWRPVFWGIGL 250
Query: 847 XXXXXXXXXRTKPGFIAFDWLGKQVQTFLEYTDAGALFVFGEKYTDHF 990
RT+PGF+AFDW+G+QVQTFL YTD GA FVFGEKYTDHF
Sbjct: 251 QFLLGLLILRTRPGFVAFDWMGRQVQTFLGYTDTGARFVFGEKYTDHF 298
>ref|NP_001078987.1| solute carrier family 28 (sodium-coupled nucleoside transporter),
member 2-like [Mus musculus].
Length = 660
Score = 124 bits (311), Expect = 1e-28
Identities = 73/186 (39%), Positives = 100/186 (53%), Gaps = 1/186 (0%)
Frame = +1
Query: 418 FYREHKTTLQYILRGILLAGYLALVIAACVLNFHRALPLXXXXXXXXXXXXWDRFMAKYE 597
F+ H + IL G+L Y A +AAC+LNF RAL L + F+ K+
Sbjct: 71 FFERHAGLFRKILLGLLCLAYAAYFLAACILNFQRALALFVITCLVFFISAY-HFLEKFP 129
Query: 598 SQ-IDKFLSPGRKLLDSHWFWLKWVTWGSLILGVILWLIFDTAKLGQQQLVSFGGLIMYI 774
++ + + LS R LKWV G+ ++ ILWL+ DTA+ +QL+SF G+ M+I
Sbjct: 130 AKKLIRCLSCFRNFCLRRC--LKWVLPGASVVSQILWLVLDTAQR-PEQLISFAGICMFI 186
Query: 775 SLTFLFSKHPTKVSWRPVFWXXXXXXXXXXXXXRTKPGFIAFDWLGKQVQTFLEYTDAGA 954
+ F SKH + V WR VFW RT+PGF AF WLG Q+Q FL YT G+
Sbjct: 187 LILFACSKHHSAVCWRTVFWGLGLQFIFGILVIRTEPGFNAFQWLGDQIQIFLAYTVEGS 246
Query: 955 LFVFGE 972
FVFG+
Sbjct: 247 SFVFGD 252
>ref|NP_766568.1| sodium/nucleoside cotransporter 2 [Mus musculus].
Length = 660
Score = 122 bits (306), Expect = 4e-28
Identities = 72/186 (38%), Positives = 96/186 (51%), Gaps = 1/186 (0%)
Frame = +1
Query: 418 FYREHKTTLQYILRGILLAGYLALVIAACVLNFHRALPLXXXXXXXXXXXXWDRFMAKYE 597
F+ H + IL G+L Y A +AAC+LNF RAL L +
Sbjct: 71 FFERHAGLFRKILLGLLCLAYAAYFLAACILNFQRALALFVITCLVIFILACHFLKKFFP 130
Query: 598 SQIDKFLSPGRKLLDSHW-FWLKWVTWGSLILGVILWLIFDTAKLGQQQLVSFGGLIMYI 774
+ + L P L ++H W K V G ++G+ILWL DTA+ +QL+SF G+ M+I
Sbjct: 131 KEQLRCLKP---LENTHLNLWAKRVFVGLSVVGLILWLALDTAQR-PEQLISFAGICMFI 186
Query: 775 SLTFLFSKHPTKVSWRPVFWXXXXXXXXXXXXXRTKPGFIAFDWLGKQVQTFLEYTDAGA 954
+ F SKH + V WR VFW RT+PGF AF WLG Q+Q FL YT G+
Sbjct: 187 LILFACSKHHSAVCWRTVFWGLGLQFIFGILVIRTEPGFNAFQWLGDQIQIFLAYTVEGS 246
Query: 955 LFVFGE 972
FVFG+
Sbjct: 247 SFVFGD 252
>ref|NP_001004184.2| solute carrier family 28, member 1 [Mus musculus].
Length = 648
Score = 122 bits (305), Expect = 6e-28
Identities = 72/184 (39%), Positives = 98/184 (53%), Gaps = 1/184 (0%)
Frame = +1
Query: 424 REHKTTLQYILRGILLAGYLALVIAACVLNFHRALPLXXXXXXXXXXXXWDRFMAKYESQ 603
REH ++I +G+L Y+ +I AC+L+F RAL L ++ S+
Sbjct: 76 REHWQLFEWISKGLLSTAYIGFLIVACLLDFPRALALFVITCVVLVFLAYNLLKRLLGSK 135
Query: 604 IDKFLS-PGRKLLDSHWFWLKWVTWGSLILGVILWLIFDTAKLGQQQLVSFGGLIMYISL 780
+ K + G L WLK + LGVILWL DTA+ +QLVSF G+ +++ L
Sbjct: 136 LKKCVKFQGHSCLS---LWLKRGLALAAGLGVILWLSLDTAQR-PEQLVSFAGICVFLVL 191
Query: 781 TFLFSKHPTKVSWRPVFWXXXXXXXXXXXXXRTKPGFIAFDWLGKQVQTFLEYTDAGALF 960
F SKH VSWR V W RT+PGF+AF WLG Q++ FL YT+AG+ F
Sbjct: 192 LFAGSKHHRAVSWRAVSWGLGLQFVLGLFVIRTEPGFVAFQWLGDQIRVFLSYTEAGSSF 251
Query: 961 VFGE 972
VFGE
Sbjct: 252 VFGE 255
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,383,689
Number of extensions: 787080
Number of successful extensions: 2664
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2654
Number of HSP's successfully gapped: 4
Length of query: 330
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 228
Effective length of database: 12,553,887
Effective search space: 2862286236
Effective search space used: 2862286236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009257
(992 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001186562.1| solute carrier family 28 member 3 [Homo sapi... 347 1e-95
Alignment gi|NP_071410.1| solute carrier family 28 member 3 [Homo sapiens]. 347 1e-95
Alignment gi|NP_004204.3| sodium/nucleoside cotransporter 1 isoform 1 [Ho... 121 9e-28
Alignment gi|NP_004203.2| sodium/nucleoside cotransporter 2 [Homo sapiens]. 118 7e-27
>ref|NP_001186562.1| solute carrier family 28 member 3 [Homo sapiens].
Length = 691
Score = 347 bits (890), Expect = 1e-95
Identities = 177/284 (62%), Positives = 201/284 (70%), Gaps = 2/284 (0%)
Frame = +1
Query: 145 VELQRMVALRDEGCRNPGFQNDEICVESQNTSGNDNSLRSRVVQNREDENGKQDEEQVTI 324
+EL+ A R EG N GFQN+E +E++NTSGN NS+RSR VQ+RE N KQDEEQVT+
Sbjct: 1 MELRSTAAPRAEGYSNVGFQNEENFLENENTSGN-NSIRSRAVQSREHTNTKQDEEQVTV 59
Query: 325 XXXXXXXXXXXXXXXTH--QKGCLENKCGTVYDFYREHKTTLQYILRGILLAGYLALVIA 498
QKGCLE + TV F R+HKTTL++I+ GILLAGYL +VI+
Sbjct: 60 EQDSPRNREHMEDDDEEMQQKGCLERRYDTVCGFCRKHKTTLRHIIWGILLAGYLVMVIS 119
Query: 499 ACVLNFHRALPLXXXXXXXXXXXXWDRFMAKYESQIDKFLSPGRKLLDSHWFWLKWVTWG 678
ACVLNFHRALPL WD MAKYE +ID+ LSPGR+LL+SHWFWLKWV W
Sbjct: 120 ACVLNFHRALPLFVITVAAIFFVVWDHLMAKYEHRIDEMLSPGRRLLNSHWFWLKWVIWS 179
Query: 679 SLILGVILWLIFDTAKLGQQQLVSFGGLIMYISLTFLFSKHPTKVSWRPVFWXXXXXXXX 858
SL+L VI WL FDTAKLGQQQLVSFGGLIMYI L FLFSK+PT+V WRPV W
Sbjct: 180 SLVLAVIFWLAFDTAKLGQQQLVSFGGLIMYIVLLFLFSKYPTRVYWRPVLWGIGLQFLL 239
Query: 859 XXXXXRTKPGFIAFDWLGKQVQTFLEYTDAGALFVFGEKYTDHF 990
RT PGFIAFDWLG+QVQTFLEYTDAGA FVFGEKY DHF
Sbjct: 240 GLLILRTDPGFIAFDWLGRQVQTFLEYTDAGASFVFGEKYKDHF 283
>ref|NP_071410.1| solute carrier family 28 member 3 [Homo sapiens].
Length = 691
Score = 347 bits (890), Expect = 1e-95
Identities = 177/284 (62%), Positives = 201/284 (70%), Gaps = 2/284 (0%)
Frame = +1
Query: 145 VELQRMVALRDEGCRNPGFQNDEICVESQNTSGNDNSLRSRVVQNREDENGKQDEEQVTI 324
+EL+ A R EG N GFQN+E +E++NTSGN NS+RSR VQ+RE N KQDEEQVT+
Sbjct: 1 MELRSTAAPRAEGYSNVGFQNEENFLENENTSGN-NSIRSRAVQSREHTNTKQDEEQVTV 59
Query: 325 XXXXXXXXXXXXXXXTH--QKGCLENKCGTVYDFYREHKTTLQYILRGILLAGYLALVIA 498
QKGCLE + TV F R+HKTTL++I+ GILLAGYL +VI+
Sbjct: 60 EQDSPRNREHMEDDDEEMQQKGCLERRYDTVCGFCRKHKTTLRHIIWGILLAGYLVMVIS 119
Query: 499 ACVLNFHRALPLXXXXXXXXXXXXWDRFMAKYESQIDKFLSPGRKLLDSHWFWLKWVTWG 678
ACVLNFHRALPL WD MAKYE +ID+ LSPGR+LL+SHWFWLKWV W
Sbjct: 120 ACVLNFHRALPLFVITVAAIFFVVWDHLMAKYEHRIDEMLSPGRRLLNSHWFWLKWVIWS 179
Query: 679 SLILGVILWLIFDTAKLGQQQLVSFGGLIMYISLTFLFSKHPTKVSWRPVFWXXXXXXXX 858
SL+L VI WL FDTAKLGQQQLVSFGGLIMYI L FLFSK+PT+V WRPV W
Sbjct: 180 SLVLAVIFWLAFDTAKLGQQQLVSFGGLIMYIVLLFLFSKYPTRVYWRPVLWGIGLQFLL 239
Query: 859 XXXXXRTKPGFIAFDWLGKQVQTFLEYTDAGALFVFGEKYTDHF 990
RT PGFIAFDWLG+QVQTFLEYTDAGA FVFGEKY DHF
Sbjct: 240 GLLILRTDPGFIAFDWLGRQVQTFLEYTDAGASFVFGEKYKDHF 283
>ref|NP_004204.3| sodium/nucleoside cotransporter 1 isoform 1 [Homo sapiens].
Length = 649
Score = 121 bits (304), Expect = 9e-28
Identities = 71/188 (37%), Positives = 98/188 (52%), Gaps = 3/188 (1%)
Frame = +1
Query: 418 FYREHKTTLQYILRGILLAGYLALVIAACVLNFHRALPLXXXXXXXXXXXXWDRFMAKYE 597
F REH ++I G+L G A ++ AC+L+F RAL L
Sbjct: 74 FCREHMQLFRWIGTGLLCTGLSAFLLVACLLDFQRALALFVLTCVVLTFLGHRLLKRLLG 133
Query: 598 SQIDKFLSPGRKLLDSHWFWLKWVTWG---SLILGVILWLIFDTAKLGQQQLVSFGGLIM 768
++ +FL P H L W G + LG++LWL DT++ +QLVSF G+ +
Sbjct: 134 PKLRRFLKP-----QGHPRLLLWFKRGLALAAFLGLVLWLSLDTSQR-PEQLVSFAGICV 187
Query: 769 YISLTFLFSKHPTKVSWRPVFWXXXXXXXXXXXXXRTKPGFIAFDWLGKQVQTFLEYTDA 948
+++L F SKH VSWR V W RT+PGFIAF+WLG+Q++ FL YT A
Sbjct: 188 FVALLFACSKHHCAVSWRAVSWGLGLQFVLGLLVIRTEPGFIAFEWLGEQIRIFLSYTKA 247
Query: 949 GALFVFGE 972
G+ FVFGE
Sbjct: 248 GSSFVFGE 255
>ref|NP_004203.2| sodium/nucleoside cotransporter 2 [Homo sapiens].
Length = 658
Score = 118 bits (296), Expect = 7e-27
Identities = 69/185 (37%), Positives = 93/185 (50%)
Frame = +1
Query: 418 FYREHKTTLQYILRGILLAGYLALVIAACVLNFHRALPLXXXXXXXXXXXXWDRFMAKYE 597
F + H + + IL G+L Y A ++AAC+LNF RAL L
Sbjct: 69 FCKTHASLFKKILLGLLCLAYAAYLLAACILNFQRALALFVITCLVIFVLVHSFLKKLLG 128
Query: 598 SQIDKFLSPGRKLLDSHWFWLKWVTWGSLILGVILWLIFDTAKLGQQQLVSFGGLIMYIS 777
++ + L P W KWV G ++G+ILWL DTA+ +QL+ F G+ M+I
Sbjct: 129 KKLTRCLKPFEN--SRLRLWTKWVFAGVSLVGLILWLALDTAQR-PEQLIPFAGICMFIL 185
Query: 778 LTFLFSKHPTKVSWRPVFWXXXXXXXXXXXXXRTKPGFIAFDWLGKQVQTFLEYTDAGAL 957
+ F SKH + VSWR VF RT G+ F WLG+QVQ FL YT AG+
Sbjct: 186 ILFACSKHHSAVSWRTVFSGLGLQFVFGILVIRTDLGYTVFQWLGEQVQIFLNYTVAGSS 245
Query: 958 FVFGE 972
FVFG+
Sbjct: 246 FVFGD 250
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,914,783
Number of extensions: 933286
Number of successful extensions: 3240
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3227
Number of HSP's successfully gapped: 4
Length of query: 330
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,901,872
Effective search space: 3382724944
Effective search space used: 3382724944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009257
(992 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 385 e-104
>Sscrofa_Chr10
|| Length = 79102373
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 473 cagggtacctggccctggtgattgcagcctgcgtgctgaacttccacagagcccttcctc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34745250 cagggtacctggccctggtgattgcagcctgcgtgctgaacttccacagagcccttcctc 34745309
Query: 533 ttttcgtgatcacagtggtcgtcatcttctttgtggtctgggatcgcttcatggccaaat 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34745310 ttttcgtgatcacagtggtcgtcatcttctttgtggtctgggatcgcttcatggccaaat 34745369
Query: 593 atgagtcgcagatcgataagttcctgtctcctggcagaaagcttctggacagccactggt 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34745370 atgagtcgcagatcgataagttcctgtctcctggcagaaagcttctggacagccactggt 34745429
Query: 653 tctggctgaagtgg 666
||||||||||||||
Sbjct: 34745430 tctggctgaagtgg 34745443
Score = 293 bits (148), Expect = 9e-77
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 665 gggtgacttggggctccctgatcctgggagttattttgtggctgatctttgacaccgcca 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34746496 gggtgacttggggctccctgatcctgggagttattttgtggctgatctttgacaccgcca 34746555
Query: 725 aactgggccaacagcagctcgtgtccttcggtggactcataatgtacatcagcctgacat 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34746556 aactgggccaacagcagctcgtgtccttcggtggactcataatgtacatcagcctgacat 34746615
Query: 785 ttctgttttccaagcacccaaccaaagt 812
||||||||||||||||||||||||||||
Sbjct: 34746616 ttctgttttccaagcacccaaccaaagt 34746643
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 811 gtttcctggagacccgtcttttggggaattgggttacagtttcttcttggacttttgata 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34747898 gtttcctggagacccgtcttttggggaattgggttacagtttcttcttggacttttgata 34747957
Query: 871 ctaaggactaaacctggatttatagcttttgattggttgggcaaacaagttcag 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34747958 ctaaggactaaacctggatttatagcttttgattggttgggcaaacaagttcag 34748011
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 203 agaatgacgaaatctgcgttgaaagccagaacacatcaggaaacgacaactcattaagga 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34734234 agaatgacgaaatctgcgttgaaagccagaacacatcaggaaacgacaactcattaagga 34734293
Query: 263 gcagagttgtgcaaaacagagaggatgaaaatggaaaacagg 304
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34734294 gcagagttgtgcaaaacagagaggatgaaaatggaaaacagg 34734335
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 383 ggtgcctggaaaacaagtgcggcacagtttatgatttttacagggaacacaaaacaaccc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34743199 ggtgcctggaaaacaagtgcggcacagtttatgatttttacagggaacacaaaacaaccc 34743258
Query: 443 ttcagtatatcctcaggggcattttactagcagg 476
||||||||||||||||||||||||||||||||||
Sbjct: 34743259 ttcagtatatcctcaggggcattttactagcagg 34743292
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 301 caggatgaagagcaagtcaccattgaggaggattctccaaggaaggaggaagaggaggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34738890 caggatgaagagcaagtcaccattgaggaggattctccaaggaaggaggaagaggaggaa 34738949
Query: 361 gatcaagagacacatcaaaaagggt 385
|||||||||||||||||||||||||
Sbjct: 34738950 gatcaagagacacatcaaaaagggt 34738974
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 921 tcagacgttcttggagtacaccgacgctggcgctttgtttgtcttcggcgagaaatatac 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34748831 tcagacgttcttggagtacaccgacgctggcgctttgtttgtcttcggcgagaaatatac 34748890
Query: 981 agaccatttttt 992
||||||||||||
Sbjct: 34748891 agaccatttttt 34748902
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,299,705
Number of extensions: 410
Number of successful extensions: 410
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 7
Length of query: 992
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 971
Effective length of database: 2,808,413,156
Effective search space: 2726969174476
Effective search space used: 2726969174476
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)