Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009271
(967 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002691833.1| PREDICTED: calcium binding protein 39-like i... 365 e-104
Alignment gi|XP_002691832.1| PREDICTED: calcium binding protein 39-like i... 365 e-104
Alignment gi|XP_597949.3| PREDICTED: calcium binding protein 39-like isof... 365 e-104
Alignment gi|XP_002700956.1| PREDICTED: calcium binding protein 39-like i... 365 e-104
Alignment gi|NP_001039552.1| calcium-binding protein 39 [Bos taurus]. 304 7e-83
Alignment gi|XP_001790672.2| PREDICTED: calcium binding protein 39-like [... 268 5e-72
>ref|XP_002691833.1| PREDICTED: calcium binding protein 39-like isoform 2 [Bos taurus].
Length = 334
Score = 365 bits (938), Expect(2) = e-104
Identities = 184/198 (92%), Positives = 190/198 (95%)
Frame = +3
Query: 327 MPLFSKSQKNPAEIVKILKDNMAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKEPPT 506
MPLFSKS KNPAEIVKIL+DN+AILEKQDKKTDKASEEVSKSLQAMKEILCGT+DKEPP
Sbjct: 1 MPLFSKSHKNPAEIVKILRDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTSDKEPPV 60
Query: 507 EAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHP 686
EAVAQL+QELYN+GLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTR PTVEYISAHP
Sbjct: 61 EAVAQLSQELYNTGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRIPTVEYISAHP 120
Query: 687 HILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVEFVTFDIASDA 866
HILFMLLKGYE PQIALRCGIMLRECIRHEPLAKIILFSNQF+DFFKYVE TFDIASDA
Sbjct: 121 HILFMLLKGYEVPQIALRCGIMLRECIRHEPLAKIILFSNQFQDFFKYVELSTFDIASDA 180
Query: 867 FATFKDFTTRHKVLVADF 920
FATFKD TRHKVLVADF
Sbjct: 181 FATFKDLLTRHKVLVADF 198
Score = 31.6 bits (70), Expect(2) = e-104
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 929 NYDTIFEDYEKLL 967
NYDTIFEDYEKLL
Sbjct: 202 NYDTIFEDYEKLL 214
>ref|XP_002691832.1| PREDICTED: calcium binding protein 39-like isoform 1 [Bos taurus].
Length = 334
Score = 365 bits (938), Expect(2) = e-104
Identities = 184/198 (92%), Positives = 190/198 (95%)
Frame = +3
Query: 327 MPLFSKSQKNPAEIVKILKDNMAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKEPPT 506
MPLFSKS KNPAEIVKIL+DN+AILEKQDKKTDKASEEVSKSLQAMKEILCGT+DKEPP
Sbjct: 1 MPLFSKSHKNPAEIVKILRDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTSDKEPPV 60
Query: 507 EAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHP 686
EAVAQL+QELYN+GLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTR PTVEYISAHP
Sbjct: 61 EAVAQLSQELYNTGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRIPTVEYISAHP 120
Query: 687 HILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVEFVTFDIASDA 866
HILFMLLKGYE PQIALRCGIMLRECIRHEPLAKIILFSNQF+DFFKYVE TFDIASDA
Sbjct: 121 HILFMLLKGYEVPQIALRCGIMLRECIRHEPLAKIILFSNQFQDFFKYVELSTFDIASDA 180
Query: 867 FATFKDFTTRHKVLVADF 920
FATFKD TRHKVLVADF
Sbjct: 181 FATFKDLLTRHKVLVADF 198
Score = 31.6 bits (70), Expect(2) = e-104
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 929 NYDTIFEDYEKLL 967
NYDTIFEDYEKLL
Sbjct: 202 NYDTIFEDYEKLL 214
>ref|XP_597949.3| PREDICTED: calcium binding protein 39-like isoform 2 [Bos taurus].
Length = 334
Score = 365 bits (938), Expect(2) = e-104
Identities = 184/198 (92%), Positives = 190/198 (95%)
Frame = +3
Query: 327 MPLFSKSQKNPAEIVKILKDNMAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKEPPT 506
MPLFSKS KNPAEIVKIL+DN+AILEKQDKKTDKASEEVSKSLQAMKEILCGT+DKEPP
Sbjct: 1 MPLFSKSHKNPAEIVKILRDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTSDKEPPV 60
Query: 507 EAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHP 686
EAVAQL+QELYN+GLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTR PTVEYISAHP
Sbjct: 61 EAVAQLSQELYNTGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRIPTVEYISAHP 120
Query: 687 HILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVEFVTFDIASDA 866
HILFMLLKGYE PQIALRCGIMLRECIRHEPLAKIILFSNQF+DFFKYVE TFDIASDA
Sbjct: 121 HILFMLLKGYEVPQIALRCGIMLRECIRHEPLAKIILFSNQFQDFFKYVELSTFDIASDA 180
Query: 867 FATFKDFTTRHKVLVADF 920
FATFKD TRHKVLVADF
Sbjct: 181 FATFKDLLTRHKVLVADF 198
Score = 31.6 bits (70), Expect(2) = e-104
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 929 NYDTIFEDYEKLL 967
NYDTIFEDYEKLL
Sbjct: 202 NYDTIFEDYEKLL 214
>ref|XP_002700956.1| PREDICTED: calcium binding protein 39-like isoform 1 [Bos taurus].
Length = 334
Score = 365 bits (938), Expect(2) = e-104
Identities = 184/198 (92%), Positives = 190/198 (95%)
Frame = +3
Query: 327 MPLFSKSQKNPAEIVKILKDNMAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKEPPT 506
MPLFSKS KNPAEIVKIL+DN+AILEKQDKKTDKASEEVSKSLQAMKEILCGT+DKEPP
Sbjct: 1 MPLFSKSHKNPAEIVKILRDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTSDKEPPV 60
Query: 507 EAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHP 686
EAVAQL+QELYN+GLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTR PTVEYISAHP
Sbjct: 61 EAVAQLSQELYNTGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRIPTVEYISAHP 120
Query: 687 HILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVEFVTFDIASDA 866
HILFMLLKGYE PQIALRCGIMLRECIRHEPLAKIILFSNQF+DFFKYVE TFDIASDA
Sbjct: 121 HILFMLLKGYEVPQIALRCGIMLRECIRHEPLAKIILFSNQFQDFFKYVELSTFDIASDA 180
Query: 867 FATFKDFTTRHKVLVADF 920
FATFKD TRHKVLVADF
Sbjct: 181 FATFKDLLTRHKVLVADF 198
Score = 31.6 bits (70), Expect(2) = e-104
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 929 NYDTIFEDYEKLL 967
NYDTIFEDYEKLL
Sbjct: 202 NYDTIFEDYEKLL 214
>ref|NP_001039552.1| calcium-binding protein 39 [Bos taurus].
Length = 341
Score = 304 bits (778), Expect(2) = 7e-83
Identities = 156/198 (78%), Positives = 174/198 (87%), Gaps = 3/198 (1%)
Frame = +3
Query: 336 FSKSQKNPAEIVKILKDNMAILEKQD---KKTDKASEEVSKSLQAMKEILCGTNDKEPPT 506
F KS K+PA+IVK LK++MA+LEKQD KK +KA+EEVSK+L AMKEIL GTN+KEP T
Sbjct: 5 FGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQT 64
Query: 507 EAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHP 686
EAVAQLAQELYNSGLL TL+ADLQLIDFEGKKDV QIFNNILRRQIGTR+PTVEYI
Sbjct: 65 EAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQ 124
Query: 687 HILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVEFVTFDIASDA 866
+ILFMLLKGYE+P+IAL CGIMLRECIRHEPLAKIIL+S QF DFF+YVE TFDIASDA
Sbjct: 125 NILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDA 184
Query: 867 FATFKDFTTRHKVLVADF 920
FATFKD TRHK+L A+F
Sbjct: 185 FATFKDLLTRHKLLSAEF 202
Score = 22.7 bits (47), Expect(2) = 7e-83
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 905 VGSRLL*TNYDTIFEDYEKLL 967
+ + L +YD F +YEKLL
Sbjct: 198 LSAEFLEQHYDRFFSEYEKLL 218
>ref|XP_001790672.2| PREDICTED: calcium binding protein 39-like [Bos taurus].
Length = 304
Score = 268 bits (684), Expect(2) = 5e-72
Identities = 135/166 (81%), Positives = 149/166 (89%)
Frame = +3
Query: 423 DKASEEVSKSLQAMKEILCGTNDKEPPTEAVAQLAQELYNSGLLVTLIADLQLIDFEGKK 602
++A+EEVSK+L AMKEIL GTN+KEP TEAVAQLAQELYNSGLL TL+ADLQLIDFEGKK
Sbjct: 66 NQATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKK 125
Query: 603 DVTQIFNNILRRQIGTRSPTVEYISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPL 782
DV QIFNNILRRQIGTR+PTVEYI +ILFMLLKGYE+P+IAL CGIMLRECIRHEPL
Sbjct: 126 DVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPL 185
Query: 783 AKIILFSNQFRDFFKYVEFVTFDIASDAFATFKDFTTRHKVLVADF 920
AKIIL+S QF DFF+YVE TFDIASDAFATFKD TRHK+L A+F
Sbjct: 186 AKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEF 231
Score = 22.7 bits (47), Expect(2) = 5e-72
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 905 VGSRLL*TNYDTIFEDYEKLL 967
+ + L +YD F +YEKLL
Sbjct: 227 LSAEFLEQHYDRFFSEYEKLL 247
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,194,026
Number of extensions: 689436
Number of successful extensions: 1734
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1733
Number of HSP's successfully gapped: 12
Length of query: 322
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 220
Effective length of database: 14,306,398
Effective search space: 3147407560
Effective search space used: 3147407560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009271
(967 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542560.2| PREDICTED: similar to Calcium binding protein 3... 381 e-108
Alignment gi|XP_534599.2| PREDICTED: similar to Calcium binding protein 3... 304 7e-83
Alignment gi|XP_861166.1| PREDICTED: similar to Calcium binding protein 3... 299 2e-81
Alignment gi|XP_861138.1| PREDICTED: similar to Calcium binding protein 3... 291 5e-79
Alignment gi|XP_861196.1| PREDICTED: similar to Calcium binding protein 3... 286 1e-77
>ref|XP_542560.2| PREDICTED: similar to Calcium binding protein 39-like (Mo25-like
protein) (Antigen MLAA-34) [Canis familiaris].
Length = 330
Score = 381 bits (979), Expect(2) = e-108
Identities = 193/201 (96%), Positives = 196/201 (97%)
Frame = +3
Query: 318 MKKMPLFSKSQKNPAEIVKILKDNMAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKE 497
MKKMPLFSKS KNPAEIVK+LKDN+AILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKE
Sbjct: 1 MKKMPLFSKSPKNPAEIVKVLKDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKE 60
Query: 498 PPTEAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYIS 677
PPTEAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYIS
Sbjct: 61 PPTEAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYIS 120
Query: 678 AHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVEFVTFDIA 857
AHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFS+QFRDFFKYVE TFDIA
Sbjct: 121 AHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSSQFRDFFKYVELSTFDIA 180
Query: 858 SDAFATFKDFTTRHKVLVADF 920
SDAFATFKD TRHKVLVADF
Sbjct: 181 SDAFATFKDLLTRHKVLVADF 201
Score = 31.6 bits (70), Expect(2) = e-108
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 929 NYDTIFEDYEKLL 967
NYDTIFEDYEKLL
Sbjct: 205 NYDTIFEDYEKLL 217
>ref|XP_534599.2| PREDICTED: similar to Calcium binding protein 39 (Mo25 protein)
isoform 1 [Canis familiaris].
Length = 341
Score = 304 bits (778), Expect(2) = 7e-83
Identities = 156/198 (78%), Positives = 174/198 (87%), Gaps = 3/198 (1%)
Frame = +3
Query: 336 FSKSQKNPAEIVKILKDNMAILEKQD---KKTDKASEEVSKSLQAMKEILCGTNDKEPPT 506
F KS K+PA+IVK LK++MA+LEKQD KK +KA+EEVSK+L AMKEIL GTN+KEP T
Sbjct: 5 FGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQT 64
Query: 507 EAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHP 686
EAVAQLAQELYNSGLL TL+ADLQLIDFEGKKDV QIFNNILRRQIGTR+PTVEYI
Sbjct: 65 EAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQ 124
Query: 687 HILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVEFVTFDIASDA 866
+ILFMLLKGYE+P+IAL CGIMLRECIRHEPLAKIIL+S QF DFF+YVE TFDIASDA
Sbjct: 125 NILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDA 184
Query: 867 FATFKDFTTRHKVLVADF 920
FATFKD TRHK+L A+F
Sbjct: 185 FATFKDLLTRHKLLSAEF 202
Score = 22.7 bits (47), Expect(2) = 7e-83
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 905 VGSRLL*TNYDTIFEDYEKLL 967
+ + L +YD F +YEKLL
Sbjct: 198 LSAEFLEQHYDKFFSEYEKLL 218
>ref|XP_861166.1| PREDICTED: similar to Calcium binding protein 39 (Mo25 protein)
isoform 4 [Canis familiaris].
Length = 343
Score = 299 bits (765), Expect(2) = 2e-81
Identities = 156/200 (78%), Positives = 174/200 (87%), Gaps = 5/200 (2%)
Frame = +3
Query: 336 FSKSQKNPAEIVKILKDNMAILEKQD---KKTDKASEEVSKSLQAMKEILCGTNDKEPPT 506
F KS K+PA+IVK LK++MA+LEKQD KK +KA+EEVSK+L AMKEIL GTN+KEP T
Sbjct: 5 FGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQT 64
Query: 507 EAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHP 686
EAVAQLAQELYNSGLL TL+ADLQLIDFEGKKDV QIFNNILRRQIGTR+PTVEYI
Sbjct: 65 EAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQ 124
Query: 687 HILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVEFVTFDIASDA 866
+ILFMLLKGYE+P+IAL CGIMLRECIRHEPLAKIIL+S QF DFF+YVE TFDIASDA
Sbjct: 125 NILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDA 184
Query: 867 FATFK--DFTTRHKVLVADF 920
FATFK D TRHK+L A+F
Sbjct: 185 FATFKICDLLTRHKLLSAEF 204
Score = 22.7 bits (47), Expect(2) = 2e-81
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 905 VGSRLL*TNYDTIFEDYEKLL 967
+ + L +YD F +YEKLL
Sbjct: 200 LSAEFLEQHYDKFFSEYEKLL 220
>ref|XP_861138.1| PREDICTED: similar to Calcium binding protein 39 (Mo25 protein)
isoform 3 [Canis familiaris].
Length = 321
Score = 291 bits (746), Expect = 5e-79
Identities = 151/194 (77%), Positives = 169/194 (87%), Gaps = 3/194 (1%)
Frame = +3
Query: 336 FSKSQKNPAEIVKILKDNMAILEKQD---KKTDKASEEVSKSLQAMKEILCGTNDKEPPT 506
F KS K+PA+IVK LK++MA+LEKQD KK +KA+EEVSK+L AMKEIL GTN+KEP T
Sbjct: 5 FGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQT 64
Query: 507 EAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHP 686
EAVAQLAQELYNSGLL TL+ADLQLIDFEGKKDV QIFNNILRRQIGTR+PTVEYI
Sbjct: 65 EAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQ 124
Query: 687 HILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVEFVTFDIASDA 866
+ILFMLLKGYE+P+IAL CGIMLRECIRHEPLAKIIL+S QF DFF+YVE TFDIASDA
Sbjct: 125 NILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDA 184
Query: 867 FATFKDFTTRHKVL 908
FATFK F+ K+L
Sbjct: 185 FATFKFFSEYEKLL 198
>ref|XP_861196.1| PREDICTED: similar to Calcium binding protein 39 (Mo25 protein)
isoform 5 [Canis familiaris].
Length = 375
Score = 286 bits (733), Expect(2) = 1e-77
Identities = 156/232 (67%), Positives = 174/232 (75%), Gaps = 37/232 (15%)
Frame = +3
Query: 336 FSKSQKNPAEIVKILKDNMAILEKQD---KKTDKASEEVSKSLQAMKEILCGTNDKEPPT 506
F KS K+PA+IVK LK++MA+LEKQD KK +KA+EEVSK+L AMKEIL GTN+KEP T
Sbjct: 5 FGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQT 64
Query: 507 EAVAQLAQELYNSGLLVTLIADLQLIDFE------------------------------- 593
EAVAQLAQELYNSGLL TL+ADLQLIDFE
Sbjct: 65 EAVAQLAQELYNSGLLSTLVADLQLIDFEVRNQIFFFFFFQKWCLLHAEMICSVCLCLAL 124
Query: 594 ---GKKDVTQIFNNILRRQIGTRSPTVEYISAHPHILFMLLKGYEAPQIALRCGIMLREC 764
GKKDV QIFNNILRRQIGTR+PTVEYI +ILFMLLKGYE+P+IAL CGIMLREC
Sbjct: 125 LLNGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLREC 184
Query: 765 IRHEPLAKIILFSNQFRDFFKYVEFVTFDIASDAFATFKDFTTRHKVLVADF 920
IRHEPLAKIIL+S QF DFF+YVE TFDIASDAFATFKD TRHK+L A+F
Sbjct: 185 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEF 236
Score = 22.7 bits (47), Expect(2) = 1e-77
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 905 VGSRLL*TNYDTIFEDYEKLL 967
+ + L +YD F +YEKLL
Sbjct: 232 LSAEFLEQHYDKFFSEYEKLL 252
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,617,062
Number of extensions: 713362
Number of successful extensions: 1819
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1814
Number of HSP's successfully gapped: 10
Length of query: 322
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 219
Effective length of database: 15,440,896
Effective search space: 3381556224
Effective search space used: 3381556224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009271
(967 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131019.2| PREDICTED: calcium-binding protein 39-like [... 387 e-110
Alignment gi|XP_003359720.1| PREDICTED: calcium-binding protein 39 isofor... 303 9e-83
Alignment gi|XP_003359719.1| PREDICTED: calcium-binding protein 39 isofor... 303 9e-83
Alignment gi|XP_003361038.1| PREDICTED: calcium-binding protein 39-like, ... 290 8e-79
Alignment gi|XP_003131017.1| PREDICTED: hypothetical protein LOC100518747... 122 4e-28
Alignment gi|XP_001926651.2| PREDICTED: zinc finger CCCH domain-containin... 35 8e-06
>ref|XP_003131019.2| PREDICTED: calcium-binding protein 39-like [Sus scrofa].
Length = 337
Score = 387 bits (994), Expect(2) = e-110
Identities = 197/201 (98%), Positives = 197/201 (98%)
Frame = +3
Query: 318 MKKMPLFSKSQKNPAEIVKILKDNMAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKE 497
MKKMPLFSKSQKNPAEIVKILKDNMAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKE
Sbjct: 1 MKKMPLFSKSQKNPAEIVKILKDNMAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKE 60
Query: 498 PPTEAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYIS 677
PPTEAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYIS
Sbjct: 61 PPTEAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYIS 120
Query: 678 AHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVEFVTFDIA 857
AHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVE TFDIA
Sbjct: 121 AHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIA 180
Query: 858 SDAFATFKDFTTRHKVLVADF 920
SDAFATFKD TRHKVLVADF
Sbjct: 181 SDAFATFKDLLTRHKVLVADF 201
Score = 31.6 bits (70), Expect(2) = e-110
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 929 NYDTIFEDYEKLL 967
NYDTIFEDYEKLL
Sbjct: 205 NYDTIFEDYEKLL 217
>ref|XP_003359720.1| PREDICTED: calcium-binding protein 39 isoform 2 [Sus scrofa].
Length = 341
Score = 303 bits (775), Expect(2) = 9e-83
Identities = 155/198 (78%), Positives = 174/198 (87%), Gaps = 3/198 (1%)
Frame = +3
Query: 336 FSKSQKNPAEIVKILKDNMAILEKQD---KKTDKASEEVSKSLQAMKEILCGTNDKEPPT 506
F KS K+PA+IV+ LK++MA+LEKQD KK +KA+EEVSK+L AMKEIL GTN+KEP T
Sbjct: 5 FGKSHKSPADIVRNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQT 64
Query: 507 EAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHP 686
EAVAQLAQELYNSGLL TL+ADLQLIDFEGKKDV QIFNNILRRQIGTR+PTVEYI
Sbjct: 65 EAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQ 124
Query: 687 HILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVEFVTFDIASDA 866
+ILFMLLKGYE+P+IAL CGIMLRECIRHEPLAKIIL+S QF DFF+YVE TFDIASDA
Sbjct: 125 NILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDA 184
Query: 867 FATFKDFTTRHKVLVADF 920
FATFKD TRHK+L A+F
Sbjct: 185 FATFKDLLTRHKLLSAEF 202
Score = 22.7 bits (47), Expect(2) = 9e-83
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 905 VGSRLL*TNYDTIFEDYEKLL 967
+ + L +YD F +YEKLL
Sbjct: 198 LSAEFLEQHYDRFFSEYEKLL 218
>ref|XP_003359719.1| PREDICTED: calcium-binding protein 39 isoform 1 [Sus scrofa].
Length = 341
Score = 303 bits (775), Expect(2) = 9e-83
Identities = 155/198 (78%), Positives = 174/198 (87%), Gaps = 3/198 (1%)
Frame = +3
Query: 336 FSKSQKNPAEIVKILKDNMAILEKQD---KKTDKASEEVSKSLQAMKEILCGTNDKEPPT 506
F KS K+PA+IV+ LK++MA+LEKQD KK +KA+EEVSK+L AMKEIL GTN+KEP T
Sbjct: 5 FGKSHKSPADIVRNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQT 64
Query: 507 EAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHP 686
EAVAQLAQELYNSGLL TL+ADLQLIDFEGKKDV QIFNNILRRQIGTR+PTVEYI
Sbjct: 65 EAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQ 124
Query: 687 HILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVEFVTFDIASDA 866
+ILFMLLKGYE+P+IAL CGIMLRECIRHEPLAKIIL+S QF DFF+YVE TFDIASDA
Sbjct: 125 NILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDA 184
Query: 867 FATFKDFTTRHKVLVADF 920
FATFKD TRHK+L A+F
Sbjct: 185 FATFKDLLTRHKLLSAEF 202
Score = 22.7 bits (47), Expect(2) = 9e-83
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 905 VGSRLL*TNYDTIFEDYEKLL 967
+ + L +YD F +YEKLL
Sbjct: 198 LSAEFLEQHYDRFFSEYEKLL 218
>ref|XP_003361038.1| PREDICTED: calcium-binding protein 39-like, partial [Sus scrofa].
Length = 395
Score = 290 bits (742), Expect = 8e-79
Identities = 151/198 (76%), Positives = 170/198 (85%), Gaps = 3/198 (1%)
Frame = +3
Query: 336 FSKSQKNPAEIVKILKDNMAILEKQD---KKTDKASEEVSKSLQAMKEILCGTNDKEPPT 506
F KS K+PA+IV+ LK++MA+LEKQD KK +KA+EEVSK+L AMKEIL GTN+KEP T
Sbjct: 5 FGKSHKSPADIVRNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQT 64
Query: 507 EAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHP 686
EAVAQLAQELYNSGLL TL+ADLQLIDFEGKKDV QIFNNILRRQIGTR+PTVEYI
Sbjct: 65 EAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQ 124
Query: 687 HILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVEFVTFDIASDA 866
+ILFMLLKGYE+P+IAL CGIMLRECIRHEPLAKIIL+S QF DFF+YVE TFDIASDA
Sbjct: 125 NILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDA 184
Query: 867 FATFKDFTTRHKVLVADF 920
FATFK T ++L DF
Sbjct: 185 FATFK--VTETRILTIDF 200
>ref|XP_003131017.1| PREDICTED: hypothetical protein LOC100518747 [Sus scrofa].
Length = 165
Score = 122 bits (305), Expect = 4e-28
Identities = 57/73 (78%), Positives = 59/73 (80%)
Frame = +1
Query: 1 CGYPRSRGWHRWXXXXXXXXXXXXXIEKKEHQELSVLFKPVVAAQKIKMQTRNQWFIHSS 180
CGYPRSRGWHRW I+KKEHQELSVLFKPVVAAQKIKMQT+NQWFIHSS
Sbjct: 93 CGYPRSRGWHRWSSGAAVSSGSTSSIKKKEHQELSVLFKPVVAAQKIKMQTQNQWFIHSS 152
Query: 181 CKTIVLKERSKLC 219
CKT VLKERSKLC
Sbjct: 153 CKTTVLKERSKLC 165
>ref|XP_001926651.2| PREDICTED: zinc finger CCCH domain-containing protein 15 [Sus
scrofa].
Length = 426
Score = 34.7 bits (78), Expect(2) = 8e-06
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +1
Query: 79 EKKEHQELSVLFKPVVAAQKI 141
+KKE QEL+ LFKPVVAAQKI
Sbjct: 74 KKKELQELNELFKPVVAAQKI 94
Score = 32.7 bits (73), Expect(2) = 8e-06
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 138 NKDADPESVVYPFFMQDHCIKGEK 209
+K ADP+SVV FF Q C KG+K
Sbjct: 95 SKGADPKSVVCAFFKQGQCTKGDK 118
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,964,362
Number of extensions: 437825
Number of successful extensions: 1128
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1125
Number of HSP's successfully gapped: 10
Length of query: 322
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 223
Effective length of database: 8,879,129
Effective search space: 1980045767
Effective search space used: 1980045767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009271
(967 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081184.3| calcium-binding protein 39-like [Mus musculus]. 379 e-108
Alignment gi|NP_598542.3| calcium-binding protein 39 [Mus musculus]. 303 8e-83
>ref|NP_081184.3| calcium-binding protein 39-like [Mus musculus].
Length = 337
Score = 379 bits (973), Expect(2) = e-108
Identities = 192/201 (95%), Positives = 195/201 (97%)
Frame = +3
Query: 318 MKKMPLFSKSQKNPAEIVKILKDNMAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKE 497
MKKMPLFSKS KNPAEIVKILKDN+AILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKE
Sbjct: 1 MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKE 60
Query: 498 PPTEAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYIS 677
PPTEAVAQLAQELY+SGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTR PTVEYIS
Sbjct: 61 PPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRCPTVEYIS 120
Query: 678 AHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVEFVTFDIA 857
+HPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVE TFDIA
Sbjct: 121 SHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIA 180
Query: 858 SDAFATFKDFTTRHKVLVADF 920
SDAFATFKD TRHKVLVADF
Sbjct: 181 SDAFATFKDLLTRHKVLVADF 201
Score = 31.6 bits (70), Expect(2) = e-108
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 929 NYDTIFEDYEKLL 967
NYDTIFEDYEKLL
Sbjct: 205 NYDTIFEDYEKLL 217
>ref|NP_598542.3| calcium-binding protein 39 [Mus musculus].
Length = 341
Score = 303 bits (777), Expect(2) = 8e-83
Identities = 156/198 (78%), Positives = 174/198 (87%), Gaps = 3/198 (1%)
Frame = +3
Query: 336 FSKSQKNPAEIVKILKDNMAILEKQD---KKTDKASEEVSKSLQAMKEILCGTNDKEPPT 506
F KS K+PA+IVK LK++MA+LEKQD KK +KA+EEVSK+L AMKEIL GTN+KEP T
Sbjct: 5 FGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQT 64
Query: 507 EAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHP 686
EAVAQLAQELYNSGLL TL+ADLQLIDFEGKKDV QIFNNILRRQIGTR+PTVEYI
Sbjct: 65 EAVAQLAQELYNSGLLGTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQ 124
Query: 687 HILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVEFVTFDIASDA 866
+ILFMLLKGYE+P+IAL CGIMLRECIRHEPLAKIIL+S QF DFF+YVE TFDIASDA
Sbjct: 125 NILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDA 184
Query: 867 FATFKDFTTRHKVLVADF 920
FATFKD TRHK+L A+F
Sbjct: 185 FATFKDLLTRHKLLSAEF 202
Score = 22.7 bits (47), Expect(2) = 8e-83
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 905 VGSRLL*TNYDTIFEDYEKLL 967
+ + L +YD F +YEKLL
Sbjct: 198 LSAEFLEQHYDRFFSEYEKLL 218
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,670,291
Number of extensions: 611691
Number of successful extensions: 1514
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1513
Number of HSP's successfully gapped: 4
Length of query: 322
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 221
Effective length of database: 12,583,923
Effective search space: 2781046983
Effective search space used: 2781046983
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009271
(967 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073138.1| calcium-binding protein 39-like [Homo sapien... 380 e-108
Alignment gi|NP_112187.2| calcium-binding protein 39-like [Homo sapiens]. 380 e-108
Alignment gi|NP_001124322.1| calcium-binding protein 39 [Homo sapiens]. 304 7e-83
Alignment gi|NP_001124321.1| calcium-binding protein 39 [Homo sapiens]. 304 7e-83
Alignment gi|NP_057373.1| calcium-binding protein 39 [Homo sapiens]. 304 7e-83
>ref|NP_001073138.1| calcium-binding protein 39-like [Homo sapiens].
Length = 337
Score = 380 bits (977), Expect(2) = e-108
Identities = 193/201 (96%), Positives = 196/201 (97%)
Frame = +3
Query: 318 MKKMPLFSKSQKNPAEIVKILKDNMAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKE 497
MKKMPLFSKS KNPAEIVKILKDN+AILEKQDKKTDKASEEVSKSLQAMKEILCGTN+KE
Sbjct: 1 MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNEKE 60
Query: 498 PPTEAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYIS 677
PPTEAVAQLAQELY+SGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYIS
Sbjct: 61 PPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYIS 120
Query: 678 AHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVEFVTFDIA 857
AHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVE TFDIA
Sbjct: 121 AHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIA 180
Query: 858 SDAFATFKDFTTRHKVLVADF 920
SDAFATFKD TRHKVLVADF
Sbjct: 181 SDAFATFKDLLTRHKVLVADF 201
Score = 31.6 bits (70), Expect(2) = e-108
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 929 NYDTIFEDYEKLL 967
NYDTIFEDYEKLL
Sbjct: 205 NYDTIFEDYEKLL 217
>ref|NP_112187.2| calcium-binding protein 39-like [Homo sapiens].
Length = 337
Score = 380 bits (977), Expect(2) = e-108
Identities = 193/201 (96%), Positives = 196/201 (97%)
Frame = +3
Query: 318 MKKMPLFSKSQKNPAEIVKILKDNMAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKE 497
MKKMPLFSKS KNPAEIVKILKDN+AILEKQDKKTDKASEEVSKSLQAMKEILCGTN+KE
Sbjct: 1 MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNEKE 60
Query: 498 PPTEAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYIS 677
PPTEAVAQLAQELY+SGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYIS
Sbjct: 61 PPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYIS 120
Query: 678 AHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVEFVTFDIA 857
AHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVE TFDIA
Sbjct: 121 AHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIA 180
Query: 858 SDAFATFKDFTTRHKVLVADF 920
SDAFATFKD TRHKVLVADF
Sbjct: 181 SDAFATFKDLLTRHKVLVADF 201
Score = 31.6 bits (70), Expect(2) = e-108
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 929 NYDTIFEDYEKLL 967
NYDTIFEDYEKLL
Sbjct: 205 NYDTIFEDYEKLL 217
>ref|NP_001124322.1| calcium-binding protein 39 [Homo sapiens].
Length = 341
Score = 304 bits (778), Expect(2) = 7e-83
Identities = 156/198 (78%), Positives = 174/198 (87%), Gaps = 3/198 (1%)
Frame = +3
Query: 336 FSKSQKNPAEIVKILKDNMAILEKQD---KKTDKASEEVSKSLQAMKEILCGTNDKEPPT 506
F KS K+PA+IVK LK++MA+LEKQD KK +KA+EEVSK+L AMKEIL GTN+KEP T
Sbjct: 5 FGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQT 64
Query: 507 EAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHP 686
EAVAQLAQELYNSGLL TL+ADLQLIDFEGKKDV QIFNNILRRQIGTR+PTVEYI
Sbjct: 65 EAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQ 124
Query: 687 HILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVEFVTFDIASDA 866
+ILFMLLKGYE+P+IAL CGIMLRECIRHEPLAKIIL+S QF DFF+YVE TFDIASDA
Sbjct: 125 NILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDA 184
Query: 867 FATFKDFTTRHKVLVADF 920
FATFKD TRHK+L A+F
Sbjct: 185 FATFKDLLTRHKLLSAEF 202
Score = 22.7 bits (47), Expect(2) = 7e-83
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 905 VGSRLL*TNYDTIFEDYEKLL 967
+ + L +YD F +YEKLL
Sbjct: 198 LSAEFLEQHYDRFFSEYEKLL 218
>ref|NP_001124321.1| calcium-binding protein 39 [Homo sapiens].
Length = 341
Score = 304 bits (778), Expect(2) = 7e-83
Identities = 156/198 (78%), Positives = 174/198 (87%), Gaps = 3/198 (1%)
Frame = +3
Query: 336 FSKSQKNPAEIVKILKDNMAILEKQD---KKTDKASEEVSKSLQAMKEILCGTNDKEPPT 506
F KS K+PA+IVK LK++MA+LEKQD KK +KA+EEVSK+L AMKEIL GTN+KEP T
Sbjct: 5 FGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQT 64
Query: 507 EAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHP 686
EAVAQLAQELYNSGLL TL+ADLQLIDFEGKKDV QIFNNILRRQIGTR+PTVEYI
Sbjct: 65 EAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQ 124
Query: 687 HILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVEFVTFDIASDA 866
+ILFMLLKGYE+P+IAL CGIMLRECIRHEPLAKIIL+S QF DFF+YVE TFDIASDA
Sbjct: 125 NILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDA 184
Query: 867 FATFKDFTTRHKVLVADF 920
FATFKD TRHK+L A+F
Sbjct: 185 FATFKDLLTRHKLLSAEF 202
Score = 22.7 bits (47), Expect(2) = 7e-83
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 905 VGSRLL*TNYDTIFEDYEKLL 967
+ + L +YD F +YEKLL
Sbjct: 198 LSAEFLEQHYDRFFSEYEKLL 218
>ref|NP_057373.1| calcium-binding protein 39 [Homo sapiens].
Length = 341
Score = 304 bits (778), Expect(2) = 7e-83
Identities = 156/198 (78%), Positives = 174/198 (87%), Gaps = 3/198 (1%)
Frame = +3
Query: 336 FSKSQKNPAEIVKILKDNMAILEKQD---KKTDKASEEVSKSLQAMKEILCGTNDKEPPT 506
F KS K+PA+IVK LK++MA+LEKQD KK +KA+EEVSK+L AMKEIL GTN+KEP T
Sbjct: 5 FGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQT 64
Query: 507 EAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHP 686
EAVAQLAQELYNSGLL TL+ADLQLIDFEGKKDV QIFNNILRRQIGTR+PTVEYI
Sbjct: 65 EAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQ 124
Query: 687 HILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVEFVTFDIASDA 866
+ILFMLLKGYE+P+IAL CGIMLRECIRHEPLAKIIL+S QF DFF+YVE TFDIASDA
Sbjct: 125 NILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDA 184
Query: 867 FATFKDFTTRHKVLVADF 920
FATFKD TRHK+L A+F
Sbjct: 185 FATFKDLLTRHKLLSAEF 202
Score = 22.7 bits (47), Expect(2) = 7e-83
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 905 VGSRLL*TNYDTIFEDYEKLL 967
+ + L +YD F +YEKLL
Sbjct: 198 LSAEFLEQHYDRFFSEYEKLL 218
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,180,950
Number of extensions: 709395
Number of successful extensions: 1817
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1814
Number of HSP's successfully gapped: 10
Length of query: 322
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 219
Effective length of database: 14,901,872
Effective search space: 3263509968
Effective search space used: 3263509968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009271
(967 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 333 1e-88
Sscrofa_Chr04 90 3e-15
Sscrofa_Chr12 72 6e-10
>Sscrofa_Chr11
|| Length = 87690581
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 427 aggcttcagaagaagtgtcaaaatcactgcaagcaatgaaagaaattctgtgtgggacaa 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18670987 aggcttcagaagaagtgtcaaaatcactgcaagcaatgaaagaaattctgtgtgggacaa 18671046
Query: 487 atgacaaggaaccccctacagaagccgtggctcagctagcacaagaactctacaatagtg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18671047 atgacaaggaaccccctacagaagccgtggctcagctagcacaagaactctacaatagtg 18671106
Query: 547 ggctgctggtgacactcatagccgacctacagctcatagactttgagg 594
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18671107 ggctgctggtgacactcatagccgacctacagctcatagactttgagg 18671154
Score = 309 bits (156), Expect = 2e-81
Identities = 170/172 (98%), Gaps = 2/172 (1%)
Strand = Plus / Plus
Query: 712 gatatgaagccccacagattgccttacgctgtgggattatgctgagagaatgtattcgac 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18689902 gatatgaagccccacagattgccttacgctgtgggattatgctgagagaatgtattcgac 18689961
Query: 772 atgaacctcttgccaaaatcatcctcttttccaatcagttcagagatttctttaaatacg 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18689962 atgaacctcttgccaaaatcatcctcttttccaatcagttcagagatttctttaaatacg 18690021
Query: 832 tggagtttgtc-acatttgatattgcttccgatgcctttgctacttttaagg 882
||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 18690022 tggag-ttgtcaacatttgatattgcttccgatgcctttgctacttttaagg 18690072
Score = 266 bits (134), Expect = 2e-68
Identities = 146/150 (97%)
Strand = Plus / Plus
Query: 61 ggatctacatcaagtattgagaagaaagaacatcaagagctaagtgtcctatttaaacca 120
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 18628806 ggatctacatcaagtattaagaagaaagaacatcaagagctaagtgttctatttaaacca 18628865
Query: 121 gtagttgctgctcagaaaataaagatgcagacccggaatcagtggtttatccattcttca 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 18628866 gtagttgctgctcagaaaataaagatgcagacccagaatcagtggtttatccattcttca 18628925
Query: 181 tgcaagaccattgtattaaaggagagaagt 210
|||||||||| |||||||||||||||||||
Sbjct: 18628926 tgcaagaccactgtattaaaggagagaagt 18628955
Score = 246 bits (124), Expect = 2e-62
Identities = 138/145 (95%)
Strand = Plus / Plus
Query: 285 agcattccatattggaagaagagatttctatagatgnnnnnnntgcctttgtttagtaaa 344
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 18665768 agcattccatattggaagaagagatttctatagatgaaaaaaatgcctttgtttagtaaa 18665827
Query: 345 tcacagaaaaatccagcggaaattgtgaaaattctgaaagacaacatggccattttggaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18665828 tcacagaaaaatccagcggaaattgtgaaaattctgaaagacaacatggccattttggaa 18665887
Query: 405 aagcaagacaaaaagacagataagg 429
|||||||||||||||||||||||||
Sbjct: 18665888 aagcaagacaaaaagacagataagg 18665912
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 592 aggggaaaaaagacgtgacccagatatttaacaacatcctgagaagacagataggcactc 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18676721 aggggaaaaaagacgtgacccagatatttaacaacatcctgagaagacagataggcactc 18676780
Query: 652 ggagtcctaccgtggagtacattagcgctcatcctcacatcctgtttatgctcctcaaag 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18676781 ggagtcctaccgtggagtacattagcgctcatcctcacatcctgtttatgctcctcaaag 18676840
Query: 712 g 712
|
Sbjct: 18676841 g 18676841
Score = 151 bits (76), Expect = 8e-34
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 211 aagctgtgttgatcatcaactttggtgaaggctgagaaagttgaagcaaatttgcagatg 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18630235 aagctgtgttgatcatcaactttggtgaaggctgagaaagttgaagcaaatttgcagatg 18630294
Query: 271 atacacaacatctaag 286
||||||||||||||||
Sbjct: 18630295 atacacaacatctaag 18630310
Score = 151 bits (76), Expect = 8e-34
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 211 aagctgtgttgatcatcaactttggtgaaggctgagaaagttgaagcaaatttgcagatg 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18790685 aagctgtgttgatcatcaactttggtgaaggctgagaaagttgaagcaaatttgcagatg 18790626
Query: 271 atacacaacatctaag 286
||||||||||||||||
Sbjct: 18790625 atacacaacatctaag 18790610
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 1 tgcggataccctcggtccagaggctggcatcgctggagtagtggcgctgctgtttcctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18612842 tgcggataccctcggtccagaggctggcatcgctggagtagtggcgctgctgtttcctcc 18612901
Query: 61 gg 62
||
Sbjct: 18612902 gg 18612903
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 891 accagacataaagtgttggtagcagacttctt 922
||||||||||||||||||||||||||||||||
Sbjct: 18694614 accagacataaagtgttggtagcagacttctt 18694645
>Sscrofa_Chr04
|| Length = 143465943
Score = 89.7 bits (45), Expect = 3e-15
Identities = 78/89 (87%)
Strand = Plus / Minus
Query: 334 tgtttagtaaatcacagaaaaatccagcggaaattgtgaaaattctgaaagacaacatgg 393
|||| ||||||||| | || | |||||| ||||||| ||||| ||||| |||||||||||
Sbjct: 44658190 tgttcagtaaatcatacaacagtccagcagaaattgcgaaaactctgacagacaacatgg 44658131
Query: 394 ccattttggaaaagcaagacaaaaagaca 422
|||||||||||||||| ||||| ||||||
Sbjct: 44658130 ccattttggaaaagcacgacaataagaca 44658102
>Sscrofa_Chr12
|| Length = 63588571
Score = 71.9 bits (36), Expect = 6e-10
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 429 gcttcagaagaagtgtcaaaatcactgcaagcaatgaaagaaattctgtgtgggacaaat 488
||||||||| |||||| |||||||||||||||||| ||||||||||||| | ||||||
Sbjct: 41231329 gcttcagaaaaagtgtagcaatcactgcaagcaatgacagaaattctgtgtagtacaaat 41231388
Query: 489 gaca 492
||||
Sbjct: 41231389 gaca 41231392
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,676,980
Number of extensions: 274
Number of successful extensions: 274
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 11
Length of query: 967
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 946
Effective length of database: 2,808,413,156
Effective search space: 2656758845576
Effective search space used: 2656758845576
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)