Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009308
(1438 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002700029.1| PREDICTED: alpha thalassemia/mental retardat... 255 8e-68
Alignment gi|XP_002700028.1| PREDICTED: alpha thalassemia/mental retardat... 255 8e-68
Alignment gi|XP_592333.4| PREDICTED: transcriptional regulator ATRX isofo... 255 8e-68
Alignment gi|XP_002707323.1| PREDICTED: transcriptional regulator ATRX [B... 255 8e-68
>ref|XP_002700029.1| PREDICTED: alpha thalassemia/mental retardation syndrome X-linked
(RAD54 homolog, S. cerevisiae) isoform 2 [Bos taurus].
Length = 2441
Score = 255 bits (651), Expect = 8e-68
Identities = 165/332 (49%), Positives = 177/332 (53%), Gaps = 1/332 (0%)
Frame = +3
Query: 3 SSDAAKLSSGKEESF-SPEDKKVAETREKSKHLKTKTCRKVQGGLSDVAXXXXXXXXXXX 179
S A KL SGKEESF SPEDKKVAE++ KSKH +T+ C+K+ GGL DVA
Sbjct: 877 SESADKLCSGKEESFNSPEDKKVAESKGKSKHQRTRMCQKILGGLCDVAEKFSEKEQSDE 936
Query: 180 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEQQYESSSDSTEKLPEGEEICHFSKGIKQN 359
MEQ+YESSSD+TEKLPEGEEIC F K IKQN
Sbjct: 937 SSEDDNEQSKKEIEEKEKKTADLNKKV--MEQEYESSSDTTEKLPEGEEICDFPKSIKQN 994
Query: 360 KSDTTDREXXXXXXXXXXXXXXNELSDNAEKLPGXXXXXXXXXXXXXXNETSGREKKRCN 539
KS + D E ELSDN+EKLPG N TS REKKR N
Sbjct: 995 KS-SADGEKKCKKIKDKASKKKGELSDNSEKLPGKRESCDSSEDKRSKNGTSSREKKRFN 1053
Query: 540 LPEKCSRKRQDCSSSDTEKYSMKEDGHDSSDXXXXXXXXXXXXXXXSKRNTKXXXXXXXX 719
LPEK SRKRQDCSSSDTEKYSMKED D SD S RN+K
Sbjct: 1054 LPEKSSRKRQDCSSSDTEKYSMKEDDCDFSDKRPKGIELRERRNLNSNRNSK-EVQSGSS 1112
Query: 720 XXXXXXXXXNXXXXXXXXXXXXXXGSIKEKMRNSLRASTKRKQAXXXXXXXXXXXXXXQN 899
N GSIKEKMRNSLR STKRKQA Q
Sbjct: 1113 SDVEESSEDNKNLKKQRALAKKKAGSIKEKMRNSLRTSTKRKQA-DITSSSSDIGDDDQK 1171
Query: 900 SLGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 995
S+GEGSSDEQKIKPVTENLVLSSHTGFCQSSG
Sbjct: 1172 SVGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 1203
>ref|XP_002700028.1| PREDICTED: alpha thalassemia/mental retardation syndrome X-linked
(RAD54 homolog, S. cerevisiae) isoform 1 [Bos taurus].
Length = 2479
Score = 255 bits (651), Expect = 8e-68
Identities = 165/332 (49%), Positives = 177/332 (53%), Gaps = 1/332 (0%)
Frame = +3
Query: 3 SSDAAKLSSGKEESF-SPEDKKVAETREKSKHLKTKTCRKVQGGLSDVAXXXXXXXXXXX 179
S A KL SGKEESF SPEDKKVAE++ KSKH +T+ C+K+ GGL DVA
Sbjct: 915 SESADKLCSGKEESFNSPEDKKVAESKGKSKHQRTRMCQKILGGLCDVAEKFSEKEQSDE 974
Query: 180 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEQQYESSSDSTEKLPEGEEICHFSKGIKQN 359
MEQ+YESSSD+TEKLPEGEEIC F K IKQN
Sbjct: 975 SSEDDNEQSKKEIEEKEKKTADLNKKV--MEQEYESSSDTTEKLPEGEEICDFPKSIKQN 1032
Query: 360 KSDTTDREXXXXXXXXXXXXXXNELSDNAEKLPGXXXXXXXXXXXXXXNETSGREKKRCN 539
KS + D E ELSDN+EKLPG N TS REKKR N
Sbjct: 1033 KS-SADGEKKCKKIKDKASKKKGELSDNSEKLPGKRESCDSSEDKRSKNGTSSREKKRFN 1091
Query: 540 LPEKCSRKRQDCSSSDTEKYSMKEDGHDSSDXXXXXXXXXXXXXXXSKRNTKXXXXXXXX 719
LPEK SRKRQDCSSSDTEKYSMKED D SD S RN+K
Sbjct: 1092 LPEKSSRKRQDCSSSDTEKYSMKEDDCDFSDKRPKGIELRERRNLNSNRNSK-EVQSGSS 1150
Query: 720 XXXXXXXXXNXXXXXXXXXXXXXXGSIKEKMRNSLRASTKRKQAXXXXXXXXXXXXXXQN 899
N GSIKEKMRNSLR STKRKQA Q
Sbjct: 1151 SDVEESSEDNKNLKKQRALAKKKAGSIKEKMRNSLRTSTKRKQA-DITSSSSDIGDDDQK 1209
Query: 900 SLGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 995
S+GEGSSDEQKIKPVTENLVLSSHTGFCQSSG
Sbjct: 1210 SVGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 1241
>ref|XP_592333.4| PREDICTED: transcriptional regulator ATRX isoform 2 [Bos taurus].
Length = 2441
Score = 255 bits (651), Expect = 8e-68
Identities = 165/332 (49%), Positives = 177/332 (53%), Gaps = 1/332 (0%)
Frame = +3
Query: 3 SSDAAKLSSGKEESF-SPEDKKVAETREKSKHLKTKTCRKVQGGLSDVAXXXXXXXXXXX 179
S A KL SGKEESF SPEDKKVAE++ KSKH +T+ C+K+ GGL DVA
Sbjct: 877 SESADKLCSGKEESFNSPEDKKVAESKGKSKHQRTRMCQKILGGLCDVAEKFSEKEQSDE 936
Query: 180 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEQQYESSSDSTEKLPEGEEICHFSKGIKQN 359
MEQ+YESSSD+TEKLPEGEEIC F K IKQN
Sbjct: 937 SSEDDNEQSKKEIEEKEKKTADLNKKV--MEQEYESSSDTTEKLPEGEEICDFPKSIKQN 994
Query: 360 KSDTTDREXXXXXXXXXXXXXXNELSDNAEKLPGXXXXXXXXXXXXXXNETSGREKKRCN 539
KS + D E ELSDN+EKLPG N TS REKKR N
Sbjct: 995 KS-SADGEKKCKKIKDKASKKKGELSDNSEKLPGKRESCDSSEDKRSKNGTSSREKKRFN 1053
Query: 540 LPEKCSRKRQDCSSSDTEKYSMKEDGHDSSDXXXXXXXXXXXXXXXSKRNTKXXXXXXXX 719
LPEK SRKRQDCSSSDTEKYSMKED D SD S RN+K
Sbjct: 1054 LPEKSSRKRQDCSSSDTEKYSMKEDDCDFSDKRPKGIELRERRNLNSNRNSK-EVQSGSS 1112
Query: 720 XXXXXXXXXNXXXXXXXXXXXXXXGSIKEKMRNSLRASTKRKQAXXXXXXXXXXXXXXQN 899
N GSIKEKMRNSLR STKRKQA Q
Sbjct: 1113 SDVEESSEDNKNLKKQRALAKKKAGSIKEKMRNSLRTSTKRKQA-DITSSSSDIGDDDQK 1171
Query: 900 SLGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 995
S+GEGSSDEQKIKPVTENLVLSSHTGFCQSSG
Sbjct: 1172 SVGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 1203
>ref|XP_002707323.1| PREDICTED: transcriptional regulator ATRX [Bos taurus].
Length = 2479
Score = 255 bits (651), Expect = 8e-68
Identities = 165/332 (49%), Positives = 177/332 (53%), Gaps = 1/332 (0%)
Frame = +3
Query: 3 SSDAAKLSSGKEESF-SPEDKKVAETREKSKHLKTKTCRKVQGGLSDVAXXXXXXXXXXX 179
S A KL SGKEESF SPEDKKVAE++ KSKH +T+ C+K+ GGL DVA
Sbjct: 915 SESADKLCSGKEESFNSPEDKKVAESKGKSKHQRTRMCQKILGGLCDVAEKFSEKEQSDE 974
Query: 180 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEQQYESSSDSTEKLPEGEEICHFSKGIKQN 359
MEQ+YESSSD+TEKLPEGEEIC F K IKQN
Sbjct: 975 SSEDDNEQSKKEIEEKEKKTADLNKKV--MEQEYESSSDTTEKLPEGEEICDFPKSIKQN 1032
Query: 360 KSDTTDREXXXXXXXXXXXXXXNELSDNAEKLPGXXXXXXXXXXXXXXNETSGREKKRCN 539
KS + D E ELSDN+EKLPG N TS REKKR N
Sbjct: 1033 KS-SADGEKKCKKIKDKASKKKGELSDNSEKLPGKRESCDSSEDKRSKNGTSSREKKRFN 1091
Query: 540 LPEKCSRKRQDCSSSDTEKYSMKEDGHDSSDXXXXXXXXXXXXXXXSKRNTKXXXXXXXX 719
LPEK SRKRQDCSSSDTEKYSMKED D SD S RN+K
Sbjct: 1092 LPEKSSRKRQDCSSSDTEKYSMKEDDCDFSDKRPKGIELRERRNLNSNRNSK-EVQSGSS 1150
Query: 720 XXXXXXXXXNXXXXXXXXXXXXXXGSIKEKMRNSLRASTKRKQAXXXXXXXXXXXXXXQN 899
N GSIKEKMRNSLR STKRKQA Q
Sbjct: 1151 SDVEESSEDNKNLKKQRALAKKKAGSIKEKMRNSLRTSTKRKQA-DITSSSSDIGDDDQK 1209
Query: 900 SLGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 995
S+GEGSSDEQKIKPVTENLVLSSHTGFCQSSG
Sbjct: 1210 SVGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 1241
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 27,604,295
Number of extensions: 756187
Number of successful extensions: 1527
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1499
Number of HSP's successfully gapped: 8
Length of query: 479
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 373
Effective length of database: 14,174,046
Effective search space: 5286919158
Effective search space used: 5286919158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009308
(1438 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_860168.1| PREDICTED: similar to transcriptional regulator... 277 2e-74
Alignment gi|XP_860124.1| PREDICTED: similar to transcriptional regulator... 277 2e-74
Alignment gi|XP_860092.1| PREDICTED: similar to transcriptional regulator... 277 2e-74
Alignment gi|XP_860057.1| PREDICTED: similar to transcriptional regulator... 277 2e-74
Alignment gi|XP_860017.1| PREDICTED: similar to transcriptional regulator... 277 2e-74
Alignment gi|XP_859979.1| PREDICTED: similar to transcriptional regulator... 277 2e-74
Alignment gi|XP_538084.2| PREDICTED: similar to transcriptional regulator... 277 2e-74
>ref|XP_860168.1| PREDICTED: similar to transcriptional regulator ATRX isoform 1
isoform 7 [Canis familiaris].
Length = 2433
Score = 277 bits (709), Expect = 2e-74
Identities = 171/333 (51%), Positives = 180/333 (54%), Gaps = 2/333 (0%)
Frame = +3
Query: 3 SSDAA-KLSSGKEESF-SPEDKKVAETREKSKHLKTKTCRKVQGGLSDVAXXXXXXXXXX 176
SSD A KL SGKE SF SPEDKKVAET+EKSKHLKTK C+KVQ GLSD+
Sbjct: 861 SSDGADKLPSGKEASFNSPEDKKVAETKEKSKHLKTKMCKKVQAGLSDILENFPKKEQSD 920
Query: 177 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEQQYESSSDSTEKLPEGEEICHFSKGIKQ 356
MEQQYESSSDSTEKLPEGE + F KGIKQ
Sbjct: 921 ESSEDDKKQSKKGTEVKEKKTTDLKKSTIKMEQQYESSSDSTEKLPEGEVVSPFPKGIKQ 980
Query: 357 NKSDTTDREXXXXXXXXXXXXXXNELSDNAEKLPGXXXXXXXXXXXXXXNETSGREKKRC 536
NK+DTT E E+SDNAEKL G N S R KKRC
Sbjct: 981 NKNDTTYGEKKSKKTKDKTSKKKGEVSDNAEKLQGKRDSCDSSEDKKSKNGASNRVKKRC 1040
Query: 537 NLPEKCSRKRQDCSSSDTEKYSMKEDGHDSSDXXXXXXXXXXXXXXXSKRNTKXXXXXXX 716
NL EK SRKRQDCSSSDTEKYSMKEDG DSSD SKRNTK
Sbjct: 1041 NLSEKSSRKRQDCSSSDTEKYSMKEDGCDSSDKRLNRIELNERRNLNSKRNTKEVHIGSS 1100
Query: 717 XXXXXXXXXXNXXXXXXXXXXXXXXGSIKEKMRNSLRASTKRKQAXXXXXXXXXXXXXXQ 896
N ++KEKMRNSLR STKRKQA Q
Sbjct: 1101 SSDGEESSEDNKKLKKQRTSAKKKTVNVKEKMRNSLRTSTKRKQADITSSSSSDIGDDDQ 1160
Query: 897 NSLGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 995
NS+GEGSSDEQKIKPVTENLVLSSHTGFCQSSG
Sbjct: 1161 NSVGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 1193
>ref|XP_860124.1| PREDICTED: similar to transcriptional regulator ATRX isoform 2
isoform 6 [Canis familiaris].
Length = 2395
Score = 277 bits (709), Expect = 2e-74
Identities = 171/333 (51%), Positives = 180/333 (54%), Gaps = 2/333 (0%)
Frame = +3
Query: 3 SSDAA-KLSSGKEESF-SPEDKKVAETREKSKHLKTKTCRKVQGGLSDVAXXXXXXXXXX 176
SSD A KL SGKE SF SPEDKKVAET+EKSKHLKTK C+KVQ GLSD+
Sbjct: 823 SSDGADKLPSGKEASFNSPEDKKVAETKEKSKHLKTKMCKKVQAGLSDILENFPKKEQSD 882
Query: 177 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEQQYESSSDSTEKLPEGEEICHFSKGIKQ 356
MEQQYESSSDSTEKLPEGE + F KGIKQ
Sbjct: 883 ESSEDDKKQSKKGTEVKEKKTTDLKKSTIKMEQQYESSSDSTEKLPEGEVVSPFPKGIKQ 942
Query: 357 NKSDTTDREXXXXXXXXXXXXXXNELSDNAEKLPGXXXXXXXXXXXXXXNETSGREKKRC 536
NK+DTT E E+SDNAEKL G N S R KKRC
Sbjct: 943 NKNDTTYGEKKSKKTKDKTSKKKGEVSDNAEKLQGKRDSCDSSEDKKSKNGASNRVKKRC 1002
Query: 537 NLPEKCSRKRQDCSSSDTEKYSMKEDGHDSSDXXXXXXXXXXXXXXXSKRNTKXXXXXXX 716
NL EK SRKRQDCSSSDTEKYSMKEDG DSSD SKRNTK
Sbjct: 1003 NLSEKSSRKRQDCSSSDTEKYSMKEDGCDSSDKRLNRIELNERRNLNSKRNTKEVHIGSS 1062
Query: 717 XXXXXXXXXXNXXXXXXXXXXXXXXGSIKEKMRNSLRASTKRKQAXXXXXXXXXXXXXXQ 896
N ++KEKMRNSLR STKRKQA Q
Sbjct: 1063 SSDGEESSEDNKKLKKQRTSAKKKTVNVKEKMRNSLRTSTKRKQADITSSSSSDIGDDDQ 1122
Query: 897 NSLGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 995
NS+GEGSSDEQKIKPVTENLVLSSHTGFCQSSG
Sbjct: 1123 NSVGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 1155
>ref|XP_860092.1| PREDICTED: similar to transcriptional regulator ATRX isoform 1
isoform 5 [Canis familiaris].
Length = 2460
Score = 277 bits (709), Expect = 2e-74
Identities = 171/333 (51%), Positives = 180/333 (54%), Gaps = 2/333 (0%)
Frame = +3
Query: 3 SSDAA-KLSSGKEESF-SPEDKKVAETREKSKHLKTKTCRKVQGGLSDVAXXXXXXXXXX 176
SSD A KL SGKE SF SPEDKKVAET+EKSKHLKTK C+KVQ GLSD+
Sbjct: 888 SSDGADKLPSGKEASFNSPEDKKVAETKEKSKHLKTKMCKKVQAGLSDILENFPKKEQSD 947
Query: 177 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEQQYESSSDSTEKLPEGEEICHFSKGIKQ 356
MEQQYESSSDSTEKLPEGE + F KGIKQ
Sbjct: 948 ESSEDDKKQSKKGTEVKEKKTTDLKKSTIKMEQQYESSSDSTEKLPEGEVVSPFPKGIKQ 1007
Query: 357 NKSDTTDREXXXXXXXXXXXXXXNELSDNAEKLPGXXXXXXXXXXXXXXNETSGREKKRC 536
NK+DTT E E+SDNAEKL G N S R KKRC
Sbjct: 1008 NKNDTTYGEKKSKKTKDKTSKKKGEVSDNAEKLQGKRDSCDSSEDKKSKNGASNRVKKRC 1067
Query: 537 NLPEKCSRKRQDCSSSDTEKYSMKEDGHDSSDXXXXXXXXXXXXXXXSKRNTKXXXXXXX 716
NL EK SRKRQDCSSSDTEKYSMKEDG DSSD SKRNTK
Sbjct: 1068 NLSEKSSRKRQDCSSSDTEKYSMKEDGCDSSDKRLNRIELNERRNLNSKRNTKEVHIGSS 1127
Query: 717 XXXXXXXXXXNXXXXXXXXXXXXXXGSIKEKMRNSLRASTKRKQAXXXXXXXXXXXXXXQ 896
N ++KEKMRNSLR STKRKQA Q
Sbjct: 1128 SSDGEESSEDNKKLKKQRTSAKKKTVNVKEKMRNSLRTSTKRKQADITSSSSSDIGDDDQ 1187
Query: 897 NSLGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 995
NS+GEGSSDEQKIKPVTENLVLSSHTGFCQSSG
Sbjct: 1188 NSVGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 1220
>ref|XP_860057.1| PREDICTED: similar to transcriptional regulator ATRX isoform 1
isoform 4 [Canis familiaris].
Length = 2482
Score = 277 bits (709), Expect = 2e-74
Identities = 171/333 (51%), Positives = 180/333 (54%), Gaps = 2/333 (0%)
Frame = +3
Query: 3 SSDAA-KLSSGKEESF-SPEDKKVAETREKSKHLKTKTCRKVQGGLSDVAXXXXXXXXXX 176
SSD A KL SGKE SF SPEDKKVAET+EKSKHLKTK C+KVQ GLSD+
Sbjct: 917 SSDGADKLPSGKEASFNSPEDKKVAETKEKSKHLKTKMCKKVQAGLSDILENFPKKEQSD 976
Query: 177 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEQQYESSSDSTEKLPEGEEICHFSKGIKQ 356
MEQQYESSSDSTEKLPEGE + F KGIKQ
Sbjct: 977 ESSEDDKKQSKKGTEVKEKKTTDLKKSTIKMEQQYESSSDSTEKLPEGEVVSPFPKGIKQ 1036
Query: 357 NKSDTTDREXXXXXXXXXXXXXXNELSDNAEKLPGXXXXXXXXXXXXXXNETSGREKKRC 536
NK+DTT E E+SDNAEKL G N S R KKRC
Sbjct: 1037 NKNDTTYGEKKSKKTKDKTSKKKGEVSDNAEKLQGKRDSCDSSEDKKSKNGASNRVKKRC 1096
Query: 537 NLPEKCSRKRQDCSSSDTEKYSMKEDGHDSSDXXXXXXXXXXXXXXXSKRNTKXXXXXXX 716
NL EK SRKRQDCSSSDTEKYSMKEDG DSSD SKRNTK
Sbjct: 1097 NLSEKSSRKRQDCSSSDTEKYSMKEDGCDSSDKRLNRIELNERRNLNSKRNTKEVHIGSS 1156
Query: 717 XXXXXXXXXXNXXXXXXXXXXXXXXGSIKEKMRNSLRASTKRKQAXXXXXXXXXXXXXXQ 896
N ++KEKMRNSLR STKRKQA Q
Sbjct: 1157 SSDGEESSEDNKKLKKQRTSAKKKTVNVKEKMRNSLRTSTKRKQADITSSSSSDIGDDDQ 1216
Query: 897 NSLGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 995
NS+GEGSSDEQKIKPVTENLVLSSHTGFCQSSG
Sbjct: 1217 NSVGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 1249
>ref|XP_860017.1| PREDICTED: similar to transcriptional regulator ATRX isoform 1
isoform 3 [Canis familiaris].
Length = 2501
Score = 277 bits (709), Expect = 2e-74
Identities = 171/333 (51%), Positives = 180/333 (54%), Gaps = 2/333 (0%)
Frame = +3
Query: 3 SSDAA-KLSSGKEESF-SPEDKKVAETREKSKHLKTKTCRKVQGGLSDVAXXXXXXXXXX 176
SSD A KL SGKE SF SPEDKKVAET+EKSKHLKTK C+KVQ GLSD+
Sbjct: 917 SSDGADKLPSGKEASFNSPEDKKVAETKEKSKHLKTKMCKKVQAGLSDILENFPKKEQSD 976
Query: 177 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEQQYESSSDSTEKLPEGEEICHFSKGIKQ 356
MEQQYESSSDSTEKLPEGE + F KGIKQ
Sbjct: 977 ESSEDDKKQSKKGTEVKEKKTTDLKKSTIKMEQQYESSSDSTEKLPEGEVVSPFPKGIKQ 1036
Query: 357 NKSDTTDREXXXXXXXXXXXXXXNELSDNAEKLPGXXXXXXXXXXXXXXNETSGREKKRC 536
NK+DTT E E+SDNAEKL G N S R KKRC
Sbjct: 1037 NKNDTTYGEKKSKKTKDKTSKKKGEVSDNAEKLQGKRDSCDSSEDKKSKNGASNRVKKRC 1096
Query: 537 NLPEKCSRKRQDCSSSDTEKYSMKEDGHDSSDXXXXXXXXXXXXXXXSKRNTKXXXXXXX 716
NL EK SRKRQDCSSSDTEKYSMKEDG DSSD SKRNTK
Sbjct: 1097 NLSEKSSRKRQDCSSSDTEKYSMKEDGCDSSDKRLNRIELNERRNLNSKRNTKEVHIGSS 1156
Query: 717 XXXXXXXXXXNXXXXXXXXXXXXXXGSIKEKMRNSLRASTKRKQAXXXXXXXXXXXXXXQ 896
N ++KEKMRNSLR STKRKQA Q
Sbjct: 1157 SSDGEESSEDNKKLKKQRTSAKKKTVNVKEKMRNSLRTSTKRKQADITSSSSSDIGDDDQ 1216
Query: 897 NSLGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 995
NS+GEGSSDEQKIKPVTENLVLSSHTGFCQSSG
Sbjct: 1217 NSVGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 1249
>ref|XP_859979.1| PREDICTED: similar to transcriptional regulator ATRX isoform 1
isoform 2 [Canis familiaris].
Length = 1818
Score = 277 bits (709), Expect = 2e-74
Identities = 171/333 (51%), Positives = 180/333 (54%), Gaps = 2/333 (0%)
Frame = +3
Query: 3 SSDAA-KLSSGKEESF-SPEDKKVAETREKSKHLKTKTCRKVQGGLSDVAXXXXXXXXXX 176
SSD A KL SGKE SF SPEDKKVAET+EKSKHLKTK C+KVQ GLSD+
Sbjct: 917 SSDGADKLPSGKEASFNSPEDKKVAETKEKSKHLKTKMCKKVQAGLSDILENFPKKEQSD 976
Query: 177 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEQQYESSSDSTEKLPEGEEICHFSKGIKQ 356
MEQQYESSSDSTEKLPEGE + F KGIKQ
Sbjct: 977 ESSEDDKKQSKKGTEVKEKKTTDLKKSTIKMEQQYESSSDSTEKLPEGEVVSPFPKGIKQ 1036
Query: 357 NKSDTTDREXXXXXXXXXXXXXXNELSDNAEKLPGXXXXXXXXXXXXXXNETSGREKKRC 536
NK+DTT E E+SDNAEKL G N S R KKRC
Sbjct: 1037 NKNDTTYGEKKSKKTKDKTSKKKGEVSDNAEKLQGKRDSCDSSEDKKSKNGASNRVKKRC 1096
Query: 537 NLPEKCSRKRQDCSSSDTEKYSMKEDGHDSSDXXXXXXXXXXXXXXXSKRNTKXXXXXXX 716
NL EK SRKRQDCSSSDTEKYSMKEDG DSSD SKRNTK
Sbjct: 1097 NLSEKSSRKRQDCSSSDTEKYSMKEDGCDSSDKRLNRIELNERRNLNSKRNTKEVHIGSS 1156
Query: 717 XXXXXXXXXXNXXXXXXXXXXXXXXGSIKEKMRNSLRASTKRKQAXXXXXXXXXXXXXXQ 896
N ++KEKMRNSLR STKRKQA Q
Sbjct: 1157 SSDGEESSEDNKKLKKQRTSAKKKTVNVKEKMRNSLRTSTKRKQADITSSSSSDIGDDDQ 1216
Query: 897 NSLGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 995
NS+GEGSSDEQKIKPVTENLVLSSHTGFCQSSG
Sbjct: 1217 NSVGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 1249
>ref|XP_538084.2| PREDICTED: similar to transcriptional regulator ATRX isoform 1
isoform 1 [Canis familiaris].
Length = 2489
Score = 277 bits (709), Expect = 2e-74
Identities = 171/333 (51%), Positives = 180/333 (54%), Gaps = 2/333 (0%)
Frame = +3
Query: 3 SSDAA-KLSSGKEESF-SPEDKKVAETREKSKHLKTKTCRKVQGGLSDVAXXXXXXXXXX 176
SSD A KL SGKE SF SPEDKKVAET+EKSKHLKTK C+KVQ GLSD+
Sbjct: 917 SSDGADKLPSGKEASFNSPEDKKVAETKEKSKHLKTKMCKKVQAGLSDILENFPKKEQSD 976
Query: 177 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEQQYESSSDSTEKLPEGEEICHFSKGIKQ 356
MEQQYESSSDSTEKLPEGE + F KGIKQ
Sbjct: 977 ESSEDDKKQSKKGTEVKEKKTTDLKKSTIKMEQQYESSSDSTEKLPEGEVVSPFPKGIKQ 1036
Query: 357 NKSDTTDREXXXXXXXXXXXXXXNELSDNAEKLPGXXXXXXXXXXXXXXNETSGREKKRC 536
NK+DTT E E+SDNAEKL G N S R KKRC
Sbjct: 1037 NKNDTTYGEKKSKKTKDKTSKKKGEVSDNAEKLQGKRDSCDSSEDKKSKNGASNRVKKRC 1096
Query: 537 NLPEKCSRKRQDCSSSDTEKYSMKEDGHDSSDXXXXXXXXXXXXXXXSKRNTKXXXXXXX 716
NL EK SRKRQDCSSSDTEKYSMKEDG DSSD SKRNTK
Sbjct: 1097 NLSEKSSRKRQDCSSSDTEKYSMKEDGCDSSDKRLNRIELNERRNLNSKRNTKEVHIGSS 1156
Query: 717 XXXXXXXXXXNXXXXXXXXXXXXXXGSIKEKMRNSLRASTKRKQAXXXXXXXXXXXXXXQ 896
N ++KEKMRNSLR STKRKQA Q
Sbjct: 1157 SSDGEESSEDNKKLKKQRTSAKKKTVNVKEKMRNSLRTSTKRKQADITSSSSSDIGDDDQ 1216
Query: 897 NSLGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 995
NS+GEGSSDEQKIKPVTENLVLSSHTGFCQSSG
Sbjct: 1217 NSVGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 1249
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 27,296,160
Number of extensions: 475491
Number of successful extensions: 1483
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1468
Number of HSP's successfully gapped: 14
Length of query: 479
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 372
Effective length of database: 15,307,552
Effective search space: 5694409344
Effective search space used: 5694409344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009308
(1438 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,402,228
Number of extensions: 956189
Number of successful extensions: 887
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 887
Number of HSP's successfully gapped: 0
Length of query: 479
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 376
Effective length of database: 8,779,541
Effective search space: 3301107416
Effective search space used: 3301107416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009308
(1438 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033556.2| transcriptional regulator ATRX [Mus musculus]. 198 8e-51
>ref|NP_033556.2| transcriptional regulator ATRX [Mus musculus].
Length = 2476
Score = 198 bits (504), Expect = 8e-51
Identities = 135/332 (40%), Positives = 161/332 (48%), Gaps = 1/332 (0%)
Frame = +3
Query: 3 SSDAAKLSSGKEESF-SPEDKKVAETREKSKHLKTKTCRKVQGGLSDVAXXXXXXXXXXX 179
SSD A+ S KEE+ SPEDK+V++T+EK+KHL+++ RK +GG SD
Sbjct: 896 SSDGAEKPSVKEENVNSPEDKRVSKTKEKTKHLRSRQSRKGKGGSSDGTDRFPKKEQSDE 955
Query: 180 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEQQYESSSDSTEKLPEGEEICHFSKGIKQN 359
EQ+++SSSD TE+LPE EEI FSKGIKQ+
Sbjct: 956 SSEGEKKQSRQRPGTKGKKAPDLKGETLKREQEWDSSSDGTERLPEEEEIGPFSKGIKQS 1015
Query: 360 KSDTTDREXXXXXXXXXXXXXXNELSDNAEKLPGXXXXXXXXXXXXXXNETSGREKKRCN 539
K+DT E ELSD+ +KLPG N S REKKR +
Sbjct: 1016 KTDTAGGEKKGKKWKDKSCEKKEELSDSVDKLPGKGDSCDSSEDKKTRNRVSLREKKRFS 1075
Query: 540 LPEKCSRKRQDCSSSDTEKYSMKEDGHDSSDXXXXXXXXXXXXXXXSKRNTKXXXXXXXX 719
LP K KR +CSSSDTEK S+K DS++ SKRNTK
Sbjct: 1076 LPAKSPGKRPECSSSDTEK-SLKGQCCDSTEKRPKRIDLRERRNSSSKRNTKEVKSASSS 1134
Query: 720 XXXXXXXXXNXXXXXXXXXXXXXXGSIKEKMRNSLRASTKRKQAXXXXXXXXXXXXXXQN 899
N G+ KEK RNSLRA+ KRKQ QN
Sbjct: 1135 SDAEGSSEDNKKQKKQRTSAKKKTGNTKEKKRNSLRATPKRKQV-DITSSSSDIGDDDQN 1193
Query: 900 SLGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 995
S GE SSDEQKIKPVTENLVL SHTGFCQSSG
Sbjct: 1194 SAGEESSDEQKIKPVTENLVLPSHTGFCQSSG 1225
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 23,158,794
Number of extensions: 404847
Number of successful extensions: 1342
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1334
Number of HSP's successfully gapped: 2
Length of query: 479
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 374
Effective length of database: 12,463,779
Effective search space: 4661453346
Effective search space used: 4661453346
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009308
(1438 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_612114.1| transcriptional regulator ATRX isoform 2 [Homo ... 254 1e-67
Alignment gi|NP_000480.2| transcriptional regulator ATRX isoform 1 [Homo ... 254 1e-67
>ref|NP_612114.1| transcriptional regulator ATRX isoform 2 [Homo sapiens].
Length = 2454
Score = 254 bits (650), Expect = 1e-67
Identities = 163/332 (49%), Positives = 174/332 (52%), Gaps = 1/332 (0%)
Frame = +3
Query: 3 SSDAAKLSSGKEESF-SPEDKKVAETREKSKHLKTKTCRKVQGGLSDVAXXXXXXXXXXX 179
S+D SGKE+SF S E +KVAET+EKSKHLKTKTC+KVQ GLSD+A
Sbjct: 879 STDGVDKLSGKEQSFTSLEVRKVAETKEKSKHLKTKTCKKVQDGLSDIAEKFLKKDQSDE 938
Query: 180 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEQQYESSSDSTEKLPEGEEICHFSKGIKQN 359
MEQQYESSSD TEKLPE EEICHF KGIKQ
Sbjct: 939 TSEDDKKQSKKGTEEKKKPSDFKKKVIK-MEQQYESSSDGTEKLPEREEICHFPKGIKQI 997
Query: 360 KSDTTDREXXXXXXXXXXXXXXNELSDNAEKLPGXXXXXXXXXXXXXXNETSGREKKRCN 539
K+ TTD E +ELSD AEK G N GREKKRC
Sbjct: 998 KNGTTDGEKKSKKIRDKTSKKKDELSDYAEKSTGKGDSCDSSEDKKSKNGAYGREKKRCK 1057
Query: 540 LPEKCSRKRQDCSSSDTEKYSMKEDGHDSSDXXXXXXXXXXXXXXXSKRNTKXXXXXXXX 719
L K SRKRQDCSSSDTEKYSMKEDG +SSD SKRNTK
Sbjct: 1058 LLGKSSRKRQDCSSSDTEKYSMKEDGCNSSDKRLKRIELRERRNLSSKRNTKEIQSGSSS 1117
Query: 720 XXXXXXXXXNXXXXXXXXXXXXXXGSIKEKMRNSLRASTKRKQAXXXXXXXXXXXXXXQN 899
N +KEK RNSLR STKRKQA QN
Sbjct: 1118 SDAEESSEDNKKKKQRTSSKKKAV-IVKEKKRNSLRTSTKRKQADITSSSSSDIEDDDQN 1176
Query: 900 SLGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 995
S+GEGSSDEQKIKPVTENLVLSSHTGFCQSSG
Sbjct: 1177 SIGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 1208
>ref|NP_000480.2| transcriptional regulator ATRX isoform 1 [Homo sapiens].
Length = 2492
Score = 254 bits (650), Expect = 1e-67
Identities = 163/332 (49%), Positives = 174/332 (52%), Gaps = 1/332 (0%)
Frame = +3
Query: 3 SSDAAKLSSGKEESF-SPEDKKVAETREKSKHLKTKTCRKVQGGLSDVAXXXXXXXXXXX 179
S+D SGKE+SF S E +KVAET+EKSKHLKTKTC+KVQ GLSD+A
Sbjct: 917 STDGVDKLSGKEQSFTSLEVRKVAETKEKSKHLKTKTCKKVQDGLSDIAEKFLKKDQSDE 976
Query: 180 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEQQYESSSDSTEKLPEGEEICHFSKGIKQN 359
MEQQYESSSD TEKLPE EEICHF KGIKQ
Sbjct: 977 TSEDDKKQSKKGTEEKKKPSDFKKKVIK-MEQQYESSSDGTEKLPEREEICHFPKGIKQI 1035
Query: 360 KSDTTDREXXXXXXXXXXXXXXNELSDNAEKLPGXXXXXXXXXXXXXXNETSGREKKRCN 539
K+ TTD E +ELSD AEK G N GREKKRC
Sbjct: 1036 KNGTTDGEKKSKKIRDKTSKKKDELSDYAEKSTGKGDSCDSSEDKKSKNGAYGREKKRCK 1095
Query: 540 LPEKCSRKRQDCSSSDTEKYSMKEDGHDSSDXXXXXXXXXXXXXXXSKRNTKXXXXXXXX 719
L K SRKRQDCSSSDTEKYSMKEDG +SSD SKRNTK
Sbjct: 1096 LLGKSSRKRQDCSSSDTEKYSMKEDGCNSSDKRLKRIELRERRNLSSKRNTKEIQSGSSS 1155
Query: 720 XXXXXXXXXNXXXXXXXXXXXXXXGSIKEKMRNSLRASTKRKQAXXXXXXXXXXXXXXQN 899
N +KEK RNSLR STKRKQA QN
Sbjct: 1156 SDAEESSEDNKKKKQRTSSKKKAV-IVKEKKRNSLRTSTKRKQADITSSSSSDIEDDDQN 1214
Query: 900 SLGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 995
S+GEGSSDEQKIKPVTENLVLSSHTGFCQSSG
Sbjct: 1215 SIGEGSSDEQKIKPVTENLVLSSHTGFCQSSG 1246
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 26,766,133
Number of extensions: 450553
Number of successful extensions: 1452
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1451
Number of HSP's successfully gapped: 6
Length of query: 479
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 373
Effective length of database: 14,802,980
Effective search space: 5521511540
Effective search space used: 5521511540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009308
(1438 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 1374 0.0
>Sscrofa_ChrX
|| Length = 144288218
Score = 1374 bits (693), Expect = 0.0
Identities = 702/705 (99%)
Strand = Plus / Minus
Query: 422 gaagaatgaattatctgataatgctgagaagttaccagggaaaagagatagttgtgattc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70669859 gaagaatgaattatctgataatgctgagaagttaccagggaaaagagatagttgtgattc 70669800
Query: 482 ttctgaagataagaagagcaagaatgaaacatccggtagagagaagaaaaggtgcaactt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70669799 ttctgaagataagaagagcaagaatgaaacatccggtagagagaagaaaaggtgcaactt 70669740
Query: 542 gcccgaaaagtgttcaaggaagagacaagattgttcatcatctgatactgagaaatattc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70669739 gcccgaaaagtgttcaaggaagagacaagattgttcatcatctgatactgagaaatattc 70669680
Query: 602 catgaaagaagatggtcatgattcttctgataagagactaaaaagaatagaattgaggga 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70669679 catgaaagaagatggtcatgattcttctgataagagactaaaaagaatagaattgaggga 70669620
Query: 662 aagaagaaatttaaattcaaagagaaataccaaggaggtacaaagtggttcatcatcttc 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70669619 aagaagaaatttaaattcaaagagaaataccaaggaggtacaaagtggttcatcatcttc 70669560
Query: 722 cgatgttgaggaaagttccgaagataataaaaaactgaagaagcaaagagctacagctaa 781
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70669559 tgatgttgaggaaagttccgaagataataaaaaactgaagaagcaaagagctacagctaa 70669500
Query: 782 aaagaaggcaggcagtatcaaggagaaaatgagaaactccctaagagcaagcactaaaag 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70669499 aaagaaggcaggcagtatcaaggagaaaatgagaaactccctaagagcaagcactaaaag 70669440
Query: 842 gaagcaagctgatattacttcctcatcatcttctgatataggagatgacgatcagaattc 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70669439 gaagcaagctgatattacttcctcatcatcttctgatataggagatgacgatcagaattc 70669380
Query: 902 tttaggtgaggggagcagtgatgaacagaaaattaagcctgtgacggaaaatttagttct 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70669379 tttaggtgaggggagcagtgatgaacagaaaattaagcctgtgacggaaaatttagttct 70669320
Query: 962 gtcttcacatactggattttgccaatcttcaggtatgggaaaataaatagaaaatttata 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70669319 gtcttcacatactggattttgccaatcttcaggtatgggaaaataaatagaaaatttata 70669260
Query: 1022 atttgtactttttcccgtttgaataactgaattgtttacttttccctgatgtcaatcaaa 1081
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70669259 atttgtacttttccccttttgaataactgaattgtttacttttccctgatgtcaatcaaa 70669200
Query: 1082 tgcaaggttactgtttaggaaaagaccatttaaaaagtcttcaga 1126
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70669199 tgcaaggttactgtttaggaaaagaccatttaaaaagtcttcaga 70669155
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Minus
Query: 1 tttcctcagatgctgctaagctttcttctggaaaggaggagagtttttctccagaagaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70670280 tttcctcagatgctgctaagctttcttctggaaaggaggagagtttttctccagaagaca 70670221
Query: 61 aaaaggttgctgaaactagagaaaagagtaagcatctgaaaaccaaaacatgtaggaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70670220 aaaaggttgctgaaactagagaaaagagtaagcatctgaaaaccaaaacatgtaggaaag 70670161
Query: 121 tacagggtggcttatctgatgttgctgagaagttctccaagaaagaacagagtgatgaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70670160 tacagggtggcttatctgatgttgctgagaagttctccaagaaagaacagagtgatgaat 70670101
Query: 181 cctctgaagatgat 194
||||||||||||||
Sbjct: 70670100 cctctgaagatgat 70670087
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 259 taattaagatggaacaacagtatgaatcatcatctgatagcactgaaaaattacctgaag 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70670022 taattaagatggaacaacagtatgaatcatcatctgatagcactgaaaaattacctgaag 70669963
Query: 319 gagaagaaatttgtcatttttctaaaggcataaaacaaaataagagtgacacaactgata 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70669962 gagaagaaatttgtcatttttctaaaggcataaaacaaaataagagtgacacaactgata 70669903
Query: 379 ggg 381
|||
Sbjct: 70669902 ggg 70669900
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,623,591
Number of extensions: 466
Number of successful extensions: 466
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 466
Number of HSP's successfully gapped: 3
Length of query: 1438
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1417
Effective length of database: 2,808,413,156
Effective search space: 3979521442052
Effective search space used: 3979521442052
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)