Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009309
(920 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030348.2| Krueppel-like factor 6 [Bos taurus]. 393 e-109
Alignment gi|NP_001179848.1| Krueppel-like factor 7 [Bos taurus]. 86 3e-17
Alignment gi|XP_002685583.1| PREDICTED: Kruppel-like factor 7 (ubiquitous... 86 3e-17
Alignment gi|NP_001178199.2| Krueppel-like factor 12 [Bos taurus]. 63 3e-10
Alignment gi|XP_002691935.1| PREDICTED: Kruppel-like factor 12-like [Bos ... 63 3e-10
Alignment gi|NP_001192907.1| Krueppel-like factor 3 [Bos taurus]. 62 7e-10
Alignment gi|XP_002688247.1| PREDICTED: Kruppel-like factor 3 (basic)-lik... 62 7e-10
Alignment gi|NP_001077002.1| Krueppel-like factor 13 [Bos taurus]. 60 3e-09
Alignment gi|XP_002700188.1| PREDICTED: Kruppel-like factor 8-like [Bos t... 56 4e-08
Alignment gi|XP_603911.5| PREDICTED: Kruppel-like factor 8-like [Bos taur... 56 4e-08
>ref|NP_001030348.2| Krueppel-like factor 6 [Bos taurus].
Length = 318
Score = 393 bits (1010), Expect = e-109
Identities = 195/260 (75%), Positives = 200/260 (76%), Gaps = 1/260 (0%)
Frame = +1
Query: 142 MNFXXXXXXXXXXXXXDRTPPCFYNSSDCLFQPDMDVLPMCSIFQELQIVHETGYFSALP 321
MNF DR PPCFY+S D LFQPDMDVLPMCSIFQELQIVHETGYFSALP
Sbjct: 1 MNFPGAAGTAAALPTADRKPPCFYSSGDGLFQPDMDVLPMCSIFQELQIVHETGYFSALP 60
Query: 322 SLEEYWQQTCLELERYLQSEPCYVSASEIKFDSQEDLWTKIILAREQKEDADLKMSSS-P 498
SLEEYWQQTCLELERYLQSEPCYVSASEIKFDSQEDLWTKIILARE+KEDADLK+SSS P
Sbjct: 61 SLEEYWQQTCLELERYLQSEPCYVSASEIKFDSQEDLWTKIILAREKKEDADLKVSSSGP 120
Query: 499 PEDALNSPGFGYNLETXXXXXXXXXXXXXXXXXXXPTTKFTSDPIGEVLVTSGNXXXXXX 678
PEDAL+SPGF YNLET PTTKFTSDPI EVLV SGN
Sbjct: 121 PEDALHSPGFSYNLETNSLNSDVSSESSDSSEELSPTTKFTSDPISEVLVNSGNLSSSVT 180
Query: 679 XXXXXXXXXXXXXXHLWGCVPGELHPPGKARSGTAGKPGDKGSGDASPDGRRRVHRCHFN 858
HLWGCVPGELHPPGKAR GT+GKPGDKGSGDASPDGRRRVHRCHFN
Sbjct: 181 STPPSSPELSREPSHLWGCVPGELHPPGKARGGTSGKPGDKGSGDASPDGRRRVHRCHFN 240
Query: 859 GCRKVYTKSSHLKAHQRTHT 918
GCRKVYTKSSHLKAHQRTHT
Sbjct: 241 GCRKVYTKSSHLKAHQRTHT 260
>ref|NP_001179848.1| Krueppel-like factor 7 [Bos taurus].
Length = 302
Score = 86.3 bits (212), Expect = 3e-17
Identities = 41/51 (80%), Positives = 45/51 (88%)
Frame = +1
Query: 244 MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVS 396
MDVL SIFQELQ+VH+TGYFSALPSLEE WQQTCLELERYLQ+EP +S
Sbjct: 1 MDVLASYSIFQELQLVHDTGYFSALPSLEETWQQTCLELERYLQTEPRRIS 51
Score = 73.2 bits (178), Expect = 3e-13
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = +1
Query: 760 GKARSGTAGKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
G +SG + +A P+ ++RVHRC FNGCRKVYTKSSHLKAHQRTHT
Sbjct: 192 GTVKSGHSDSEQGGVGAEACPENKKRVHRCQFNGCRKVYTKSSHLKAHQRTHT 244
>ref|XP_002685583.1| PREDICTED: Kruppel-like factor 7 (ubiquitous) [Bos taurus].
Length = 302
Score = 86.3 bits (212), Expect = 3e-17
Identities = 41/51 (80%), Positives = 45/51 (88%)
Frame = +1
Query: 244 MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVS 396
MDVL SIFQELQ+VH+TGYFSALPSLEE WQQTCLELERYLQ+EP +S
Sbjct: 1 MDVLASYSIFQELQLVHDTGYFSALPSLEETWQQTCLELERYLQTEPRRIS 51
Score = 73.2 bits (178), Expect = 3e-13
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = +1
Query: 760 GKARSGTAGKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
G +SG + +A P+ ++RVHRC FNGCRKVYTKSSHLKAHQRTHT
Sbjct: 192 GTVKSGHSDSEQGGVGAEACPENKKRVHRCQFNGCRKVYTKSSHLKAHQRTHT 244
>ref|NP_001178199.2| Krueppel-like factor 12 [Bos taurus].
Length = 402
Score = 63.2 bits (152), Expect = 3e-10
Identities = 28/35 (80%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
Frame = +1
Query: 817 SPDGR-RRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
SPD R RR+HRC F GC KVYTKSSHLKAH+RTHT
Sbjct: 308 SPDSRKRRIHRCDFEGCNKVYTKSSHLKAHRRTHT 342
>ref|XP_002691935.1| PREDICTED: Kruppel-like factor 12-like [Bos taurus].
Length = 393
Score = 63.2 bits (152), Expect = 3e-10
Identities = 28/35 (80%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
Frame = +1
Query: 817 SPDGR-RRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
SPD R RR+HRC F GC KVYTKSSHLKAH+RTHT
Sbjct: 299 SPDSRKRRIHRCDFEGCNKVYTKSSHLKAHRRTHT 333
>ref|NP_001192907.1| Krueppel-like factor 3 [Bos taurus].
Length = 346
Score = 62.0 bits (149), Expect = 7e-10
Identities = 28/46 (60%), Positives = 35/46 (76%), Gaps = 2/46 (4%)
Frame = +1
Query: 787 KPGDKGSGDASPDG--RRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
+PG + SPD +RR+HRC ++GC KVYTKSSHLKAH+RTHT
Sbjct: 241 QPGKRPLPVESPDTQRKRRIHRCDYDGCNKVYTKSSHLKAHRRTHT 286
>ref|XP_002688247.1| PREDICTED: Kruppel-like factor 3 (basic)-like [Bos taurus].
Length = 346
Score = 62.0 bits (149), Expect = 7e-10
Identities = 28/46 (60%), Positives = 35/46 (76%), Gaps = 2/46 (4%)
Frame = +1
Query: 787 KPGDKGSGDASPDG--RRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
+PG + SPD +RR+HRC ++GC KVYTKSSHLKAH+RTHT
Sbjct: 241 QPGKRPLPVESPDTQRKRRIHRCDYDGCNKVYTKSSHLKAHRRTHT 286
>ref|NP_001077002.1| Krueppel-like factor 13 [Bos taurus].
Length = 296
Score = 60.1 bits (144), Expect = 3e-09
Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Frame = +1
Query: 757 PGKARSGTAG--KPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
PG A SG G + G +G + +R H+CH+ GC KVY KSSHLKAH RTHT
Sbjct: 145 PGPAGSGEPGFRQRGRRGRSRTDLESPQRKHKCHYAGCEKVYGKSSHLKAHLRTHT 200
>ref|XP_002700188.1| PREDICTED: Kruppel-like factor 8-like [Bos taurus].
Length = 567
Score = 56.2 bits (134), Expect = 4e-08
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +1
Query: 829 RRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
RRR+H+C F GC KVYTKSSHLKAH+R HT
Sbjct: 478 RRRIHQCDFAGCSKVYTKSSHLKAHRRIHT 507
>ref|XP_603911.5| PREDICTED: Kruppel-like factor 8-like [Bos taurus].
Length = 567
Score = 56.2 bits (134), Expect = 4e-08
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +1
Query: 829 RRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
RRR+H+C F GC KVYTKSSHLKAH+R HT
Sbjct: 478 RRRIHQCDFAGCSKVYTKSSHLKAHRRIHT 507
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,939,253
Number of extensions: 1100641
Number of successful extensions: 11100
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 11010
Number of HSP's successfully gapped: 30
Length of query: 306
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,306,398
Effective search space: 2918505192
Effective search space used: 2918505192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009309
(920 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544279.2| PREDICTED: similar to Kruppel-like factor 6 [Ca... 385 e-128
Alignment gi|XP_860115.1| PREDICTED: similar to Kruppel-like factor 7 (ub... 86 4e-17
Alignment gi|XP_860082.1| PREDICTED: similar to Krueppel-like factor 7 is... 86 4e-17
Alignment gi|XP_860044.1| PREDICTED: similar to Kruppel-like factor 7 (ub... 86 4e-17
Alignment gi|XP_536044.2| PREDICTED: similar to Kruppel-like factor 7 (ub... 86 4e-17
Alignment gi|XP_857906.1| PREDICTED: similar to Kruppel-like factor 12 is... 63 3e-10
Alignment gi|XP_542612.2| PREDICTED: similar to Kruppel-like factor 12 is... 63 3e-10
Alignment gi|XP_545954.2| PREDICTED: similar to Kruppel-like factor 3 (Ba... 62 8e-10
Alignment gi|XP_542040.2| PREDICTED: similar to Kruppel-like factor 1 (er... 58 1e-08
Alignment gi|XP_855498.1| PREDICTED: similar to Krueppel-like factor 8 (Z... 56 4e-08
>ref|XP_544279.2| PREDICTED: similar to Kruppel-like factor 6 [Canis familiaris].
Length = 439
Score = 385 bits (990), Expect(2) = e-128
Identities = 189/243 (77%), Positives = 191/243 (78%), Gaps = 1/243 (0%)
Frame = +1
Query: 193 RTPPCFYNSS-DCLFQPDMDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERY 369
RT PC DCLFQPDMDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERY
Sbjct: 139 RTAPCVLGGGGDCLFQPDMDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERY 198
Query: 370 LQSEPCYVSASEIKFDSQEDLWTKIILAREQKEDADLKMSSSPPEDALNSPGFGYNLETX 549
LQSEPCYVSASEIKFDSQEDLWTKIILARE+KED DLK+SSSPPEDALNSPGF YNLET
Sbjct: 199 LQSEPCYVSASEIKFDSQEDLWTKIILAREKKEDPDLKLSSSPPEDALNSPGFAYNLETN 258
Query: 550 XXXXXXXXXXXXXXXXXXPTTKFTSDPIGEVLVTSGNXXXXXXXXXXXXXXXXXXXXHLW 729
PTTKFTSDPIGEVLV SG HLW
Sbjct: 259 SLNSDVSSESSDSSEELSPTTKFTSDPIGEVLVNSGTLSSSATSTPPSSPELSREPSHLW 318
Query: 730 GCVPGELHPPGKARSGTAGKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQR 909
GCVPGELHPPGK R GTAGKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQR
Sbjct: 319 GCVPGELHPPGKVRGGTAGKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQR 378
Query: 910 THT 918
THT
Sbjct: 379 THT 381
Score = 93.2 bits (230), Expect(2) = e-128
Identities = 42/48 (87%), Positives = 43/48 (89%)
Frame = +3
Query: 3 LAYWKSCRGYVCSQSGVCKYCVGSRVRLRAPAGSEPAAPNCCALSLHE 146
L K CRGYVCSQSGVCKYCVGSR RLRAPAGSEPAAP+CCALSLHE
Sbjct: 75 LGIGKFCRGYVCSQSGVCKYCVGSRARLRAPAGSEPAAPHCCALSLHE 122
>ref|XP_860115.1| PREDICTED: similar to Kruppel-like factor 7 (ubiquitous) isoform 4
[Canis familiaris].
Length = 302
Score = 86.3 bits (212), Expect = 4e-17
Identities = 41/51 (80%), Positives = 45/51 (88%)
Frame = +1
Query: 244 MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVS 396
MDVL SIFQELQ+VH+TGYFSALPSLEE WQQTCLELERYLQ+EP +S
Sbjct: 1 MDVLASYSIFQELQLVHDTGYFSALPSLEETWQQTCLELERYLQTEPRRIS 51
Score = 73.6 bits (179), Expect = 3e-13
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = +1
Query: 760 GKARSGTAGKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
G +SG + +A P+ ++RVHRC FNGCRKVYTKSSHLKAHQRTHT
Sbjct: 192 GTVKSGQSDSEQGGVGAEACPENKKRVHRCQFNGCRKVYTKSSHLKAHQRTHT 244
>ref|XP_860082.1| PREDICTED: similar to Krueppel-like factor 7 isoform 3 [Canis
familiaris].
Length = 230
Score = 86.3 bits (212), Expect = 4e-17
Identities = 41/51 (80%), Positives = 45/51 (88%)
Frame = +1
Query: 244 MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVS 396
MDVL SIFQELQ+VH+TGYFSALPSLEE WQQTCLELERYLQ+EP +S
Sbjct: 1 MDVLASYSIFQELQLVHDTGYFSALPSLEETWQQTCLELERYLQTEPRRIS 51
>ref|XP_860044.1| PREDICTED: similar to Kruppel-like factor 7 (ubiquitous) isoform 2
[Canis familiaris].
Length = 302
Score = 86.3 bits (212), Expect = 4e-17
Identities = 41/51 (80%), Positives = 45/51 (88%)
Frame = +1
Query: 244 MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVS 396
MDVL SIFQELQ+VH+TGYFSALPSLEE WQQTCLELERYLQ+EP +S
Sbjct: 1 MDVLASYSIFQELQLVHDTGYFSALPSLEETWQQTCLELERYLQTEPRRIS 51
Score = 73.6 bits (179), Expect = 3e-13
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = +1
Query: 760 GKARSGTAGKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
G +SG + +A P+ ++RVHRC FNGCRKVYTKSSHLKAHQRTHT
Sbjct: 192 GTVKSGQSDSEQGGVGAEACPENKKRVHRCQFNGCRKVYTKSSHLKAHQRTHT 244
>ref|XP_536044.2| PREDICTED: similar to Kruppel-like factor 7 (ubiquitous) isoform 1
[Canis familiaris].
Length = 302
Score = 86.3 bits (212), Expect = 4e-17
Identities = 41/51 (80%), Positives = 45/51 (88%)
Frame = +1
Query: 244 MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVS 396
MDVL SIFQELQ+VH+TGYFSALPSLEE WQQTCLELERYLQ+EP +S
Sbjct: 1 MDVLASYSIFQELQLVHDTGYFSALPSLEETWQQTCLELERYLQTEPRRIS 51
Score = 73.6 bits (179), Expect = 3e-13
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = +1
Query: 760 GKARSGTAGKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
G +SG + +A P+ ++RVHRC FNGCRKVYTKSSHLKAHQRTHT
Sbjct: 192 GTVKSGQSDSEQGGVGAEACPENKKRVHRCQFNGCRKVYTKSSHLKAHQRTHT 244
>ref|XP_857906.1| PREDICTED: similar to Kruppel-like factor 12 isoform a isoform 2
[Canis familiaris].
Length = 347
Score = 63.2 bits (152), Expect = 3e-10
Identities = 28/35 (80%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
Frame = +1
Query: 817 SPDGR-RRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
SPD R RR+HRC F GC KVYTKSSHLKAH+RTHT
Sbjct: 253 SPDSRKRRIHRCDFEGCNKVYTKSSHLKAHRRTHT 287
>ref|XP_542612.2| PREDICTED: similar to Kruppel-like factor 12 isoform a isoform 1
[Canis familiaris].
Length = 398
Score = 63.2 bits (152), Expect = 3e-10
Identities = 28/35 (80%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
Frame = +1
Query: 817 SPDGR-RRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
SPD R RR+HRC F GC KVYTKSSHLKAH+RTHT
Sbjct: 304 SPDSRKRRIHRCDFEGCNKVYTKSSHLKAHRRTHT 338
>ref|XP_545954.2| PREDICTED: similar to Kruppel-like factor 3 (Basic kruppel-like
factor) (CACCC-box binding protein BKLF) (TEF-2) [Canis
familiaris].
Length = 443
Score = 62.0 bits (149), Expect = 8e-10
Identities = 28/46 (60%), Positives = 35/46 (76%), Gaps = 2/46 (4%)
Frame = +1
Query: 787 KPGDKGSGDASPDG--RRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
+PG + SPD +RR+HRC ++GC KVYTKSSHLKAH+RTHT
Sbjct: 338 QPGKRPLPVESPDTQRKRRIHRCDYDGCNKVYTKSSHLKAHRRTHT 383
>ref|XP_542040.2| PREDICTED: similar to Kruppel-like factor 1 (erythroid) [Canis
familiaris].
Length = 412
Score = 57.8 bits (138), Expect = 1e-08
Identities = 33/64 (51%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Frame = +1
Query: 757 PGKARSGTAGKPGDKGS-GDASPDGRRR---------VHRCHFNGCRKVYTKSSHLKAHQ 906
PG A SG G GD G DA+P R R H C GC K YTKSSHLKAH
Sbjct: 291 PGTAGSGLRGTAGDPGGVADAAPSKRSRRSWARKRQAAHTCTHPGCGKSYTKSSHLKAHL 350
Query: 907 RTHT 918
RTHT
Sbjct: 351 RTHT 354
>ref|XP_855498.1| PREDICTED: similar to Krueppel-like factor 8 (Zinc finger protein
741) (Basic kruppel-like factor 3) [Canis familiaris].
Length = 258
Score = 56.2 bits (134), Expect = 4e-08
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +1
Query: 829 RRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
RRR+H+C F GC KVYTKSSHLKAH+R HT
Sbjct: 224 RRRIHQCDFAGCSKVYTKSSHLKAHRRIHT 253
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,324,637
Number of extensions: 1122348
Number of successful extensions: 10657
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 10572
Number of HSP's successfully gapped: 24
Length of query: 306
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 204
Effective length of database: 15,474,232
Effective search space: 3156743328
Effective search space used: 3156743328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009309
(920 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001127825.1| Krueppel-like factor 6 [Sus scrofa]. 379 e-105
Alignment gi|NP_001090956.1| Krueppel-like factor 7 [Sus scrofa]. 86 2e-17
Alignment gi|NP_001127819.1| Krueppel-like factor 12 [Sus scrofa]. 63 2e-10
Alignment gi|NP_001127824.1| Krueppel-like factor 3 [Sus scrofa]. 62 4e-10
Alignment gi|NP_001011505.1| Krueppel-like factor 13 [Sus scrofa]. 59 3e-09
Alignment gi|XP_003135181.2| PREDICTED: Krueppel-like factor 8-like, part... 56 2e-08
Alignment gi|NP_001177179.1| Krueppel-like factor 8 [Sus scrofa]. 56 2e-08
Alignment gi|NP_001127822.2| Krueppel-like factor 1 [Sus scrofa]. 56 2e-08
Alignment gi|NP_001026952.1| Krueppel-like factor 4 [Sus scrofa]. 55 7e-08
Alignment gi|NP_001090958.1| Krueppel-like factor 5 [Sus scrofa]. 54 9e-08
>ref|NP_001127825.1| Krueppel-like factor 6 [Sus scrofa].
Length = 283
Score = 379 bits (973), Expect = e-105
Identities = 186/225 (82%), Positives = 186/225 (82%)
Frame = +1
Query: 244 MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVSASEIKFDSQ 423
MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVSASEIKFDSQ
Sbjct: 1 MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVSASEIKFDSQ 60
Query: 424 EDLWTKIILAREQKEDADLKMSSSPPEDALNSPGFGYNLETXXXXXXXXXXXXXXXXXXX 603
EDLWTKIILAREQKEDADLKMSSSPPEDALNSPGFGYNLET
Sbjct: 61 EDLWTKIILAREQKEDADLKMSSSPPEDALNSPGFGYNLETNSLNSDVSSESSDSSEELS 120
Query: 604 PTTKFTSDPIGEVLVTSGNXXXXXXXXXXXXXXXXXXXXHLWGCVPGELHPPGKARSGTA 783
PTTKFTSDPIGEVLVTSGN HLWGCVPGELHPPGKARSGTA
Sbjct: 121 PTTKFTSDPIGEVLVTSGNLSSSVTSTPPSSPELSREPSHLWGCVPGELHPPGKARSGTA 180
Query: 784 GKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
GKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT
Sbjct: 181 GKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 225
>ref|NP_001090956.1| Krueppel-like factor 7 [Sus scrofa].
Length = 302
Score = 86.3 bits (212), Expect = 2e-17
Identities = 41/51 (80%), Positives = 45/51 (88%)
Frame = +1
Query: 244 MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVS 396
MDVL SIFQELQ+VH+TGYFSALPSLEE WQQTCLELERYLQ+EP +S
Sbjct: 1 MDVLASYSIFQELQLVHDTGYFSALPSLEETWQQTCLELERYLQTEPRRIS 51
Score = 73.6 bits (179), Expect = 1e-13
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = +1
Query: 760 GKARSGTAGKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
G +SG + +A P+ ++RVHRC FNGCRKVYTKSSHLKAHQRTHT
Sbjct: 192 GTVKSGQSDSEQGGVGAEACPENKKRVHRCQFNGCRKVYTKSSHLKAHQRTHT 244
>ref|NP_001127819.1| Krueppel-like factor 12 [Sus scrofa].
Length = 402
Score = 63.2 bits (152), Expect = 2e-10
Identities = 28/35 (80%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
Frame = +1
Query: 817 SPDGR-RRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
SPD R RR+HRC F GC KVYTKSSHLKAH+RTHT
Sbjct: 308 SPDSRKRRIHRCDFEGCNKVYTKSSHLKAHRRTHT 342
>ref|NP_001127824.1| Krueppel-like factor 3 [Sus scrofa].
Length = 347
Score = 62.0 bits (149), Expect = 4e-10
Identities = 28/46 (60%), Positives = 35/46 (76%), Gaps = 2/46 (4%)
Frame = +1
Query: 787 KPGDKGSGDASPDG--RRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
+PG + SPD +RR+HRC ++GC KVYTKSSHLKAH+RTHT
Sbjct: 242 QPGKRPLPVESPDTQRKRRIHRCDYDGCNKVYTKSSHLKAHRRTHT 287
>ref|NP_001011505.1| Krueppel-like factor 13 [Sus scrofa].
Length = 292
Score = 59.3 bits (142), Expect = 3e-09
Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Frame = +1
Query: 757 PGKARSGTAG--KPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
PG A SG + G +G A + +R H+CH+ GC KVY KSSHLKAH RTHT
Sbjct: 141 PGPAGSGEPSLRQRGRRGRSRADLESPQRKHKCHYAGCEKVYGKSSHLKAHLRTHT 196
>ref|XP_003135181.2| PREDICTED: Krueppel-like factor 8-like, partial [Sus scrofa].
Length = 307
Score = 56.2 bits (134), Expect = 2e-08
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +1
Query: 829 RRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
RRR+H+C F GC KVYTKSSHLKAH+R HT
Sbjct: 245 RRRIHQCDFAGCSKVYTKSSHLKAHRRIHT 274
>ref|NP_001177179.1| Krueppel-like factor 8 [Sus scrofa].
Length = 359
Score = 56.2 bits (134), Expect = 2e-08
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +1
Query: 829 RRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
RRR+H+C F GC KVYTKSSHLKAH+R HT
Sbjct: 270 RRRIHQCDFAGCSKVYTKSSHLKAHRRIHT 299
>ref|NP_001127822.2| Krueppel-like factor 1 [Sus scrofa].
Length = 367
Score = 56.2 bits (134), Expect = 2e-08
Identities = 31/64 (48%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
Frame = +1
Query: 757 PGKARSGTAGKPGDKG-SGDASPDGRRR---------VHRCHFNGCRKVYTKSSHLKAHQ 906
PG A +G G GD G + +A+P R R H C GC K YTKSSHLKAH
Sbjct: 246 PGTAGAGLGGTTGDSGGTAEAAPSKRSRRSWARKRQAAHTCTHPGCGKSYTKSSHLKAHL 305
Query: 907 RTHT 918
RTHT
Sbjct: 306 RTHT 309
>ref|NP_001026952.1| Krueppel-like factor 4 [Sus scrofa].
Length = 510
Score = 54.7 bits (130), Expect = 7e-08
Identities = 30/60 (50%), Positives = 33/60 (55%)
Frame = +1
Query: 739 PGELHPPGKARSGTAGKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
P EL PPG S +P K + P R H C + GC K YTKSSHLKAH RTHT
Sbjct: 396 PLELMPPG---SCMPEEPKPKRGRRSWPRKRTATHTCDYAGCGKTYTKSSHLKAHLRTHT 452
>ref|NP_001090958.1| Krueppel-like factor 5 [Sus scrofa].
Length = 457
Score = 54.3 bits (129), Expect = 9e-08
Identities = 24/36 (66%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
Frame = +1
Query: 814 ASPD-GRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
++PD +RR+H C + GC KVYTKSSHLKAH RTHT
Sbjct: 363 SNPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHT 398
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,825,860
Number of extensions: 708109
Number of successful extensions: 6436
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 6391
Number of HSP's successfully gapped: 23
Length of query: 306
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 207
Effective length of database: 8,879,129
Effective search space: 1837979703
Effective search space used: 1837979703
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009309
(920 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035933.2| Krueppel-like factor 6 [Mus musculus]. 363 e-101
Alignment gi|NP_291041.2| Krueppel-like factor 7 [Mus musculus]. 86 3e-17
Alignment gi|NP_034766.2| Krueppel-like factor 12 [Mus musculus]. 63 3e-10
Alignment gi|NP_032479.1| Krueppel-like factor 3 [Mus musculus]. 62 6e-10
Alignment gi|NP_067341.2| Krueppel-like factor 13 [Mus musculus]. 62 8e-10
Alignment gi|NP_033899.2| Krueppel-like factor 5 [Mus musculus]. 57 2e-08
Alignment gi|NP_776141.1| Krueppel-like factor 8 [Mus musculus]. 56 3e-08
Alignment gi|NP_001128565.1| Krueppel-like factor 14 [Mus musculus]. 54 1e-07
Alignment gi|NP_034767.2| Krueppel-like factor 4 [Mus musculus]. 54 2e-07
Alignment gi|NP_001159857.1| transcription factor Sp4 isoform 2 [Mus musc... 51 1e-06
>ref|NP_035933.2| Krueppel-like factor 6 [Mus musculus].
Length = 318
Score = 363 bits (933), Expect = e-101
Identities = 179/244 (73%), Positives = 190/244 (77%), Gaps = 1/244 (0%)
Frame = +1
Query: 190 DRTPPCFYNSSDCLFQPDMDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERY 369
DR+PPCF +S DCLFQPDMDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERY
Sbjct: 17 DRSPPCFPDSEDCLFQPDMDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERY 76
Query: 370 LQSEPCYVSASEIKFDSQEDLWTKIILAR-EQKEDADLKMSSSPPEDALNSPGFGYNLET 546
LQSEPCYVSASEIKFDSQEDLWTK ILAR E+KE+++LK+SSSPPED+L S F YNLET
Sbjct: 77 LQSEPCYVSASEIKFDSQEDLWTKFILARGEKKEESELKISSSPPEDSLISSSFNYNLET 136
Query: 547 XXXXXXXXXXXXXXXXXXXPTTKFTSDPIGEVLVTSGNXXXXXXXXXXXXXXXXXXXXHL 726
PTTKFTSDPIGEVLV SGN L
Sbjct: 137 NSLNSDVSSESSDSSEELSPTTKFTSDPIGEVLVNSGNLSSSVISTPPSSPEVNRESSQL 196
Query: 727 WGCVPGELHPPGKARSGTAGKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQ 906
WGC PG+L PGK RSGT+GK GDKG+GDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQ
Sbjct: 197 WGCGPGDLPSPGKVRSGTSGKSGDKGNGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQ 256
Query: 907 RTHT 918
RTHT
Sbjct: 257 RTHT 260
>ref|NP_291041.2| Krueppel-like factor 7 [Mus musculus].
Length = 301
Score = 86.3 bits (212), Expect = 3e-17
Identities = 41/51 (80%), Positives = 45/51 (88%)
Frame = +1
Query: 244 MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVS 396
MDVL SIFQELQ+VH+TGYFSALPSLEE WQQTCLELERYLQ+EP +S
Sbjct: 1 MDVLASYSIFQELQLVHDTGYFSALPSLEETWQQTCLELERYLQTEPRRIS 51
Score = 79.3 bits (194), Expect = 4e-15
Identities = 34/55 (61%), Positives = 39/55 (70%)
Frame = +1
Query: 754 PPGKARSGTAGKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
P G +SG + G D P+ ++RVHRC FNGCRKVYTKSSHLKAHQRTHT
Sbjct: 189 PAGAVKSGQSDSEQGGGGADTCPENKKRVHRCQFNGCRKVYTKSSHLKAHQRTHT 243
>ref|NP_034766.2| Krueppel-like factor 12 [Mus musculus].
Length = 402
Score = 63.2 bits (152), Expect = 3e-10
Identities = 28/35 (80%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
Frame = +1
Query: 817 SPDGR-RRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
SPD R RR+HRC F GC KVYTKSSHLKAH+RTHT
Sbjct: 308 SPDSRKRRIHRCDFEGCNKVYTKSSHLKAHRRTHT 342
>ref|NP_032479.1| Krueppel-like factor 3 [Mus musculus].
Length = 344
Score = 62.0 bits (149), Expect = 6e-10
Identities = 28/46 (60%), Positives = 35/46 (76%), Gaps = 2/46 (4%)
Frame = +1
Query: 787 KPGDKGSGDASPDG--RRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
+PG + SPD +RR+HRC ++GC KVYTKSSHLKAH+RTHT
Sbjct: 239 QPGKRPLPVESPDTQRKRRIHRCDYDGCNKVYTKSSHLKAHRRTHT 284
>ref|NP_067341.2| Krueppel-like factor 13 [Mus musculus].
Length = 289
Score = 61.6 bits (148), Expect = 8e-10
Identities = 30/56 (53%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Frame = +1
Query: 757 PGKARSGTAG--KPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
PG A SG G + G +G A + +R H+CH+ GC KVY KSSHLKAH RTHT
Sbjct: 138 PGPAGSGEPGLRQRGRRGRSRADLESPQRKHKCHYAGCEKVYGKSSHLKAHLRTHT 193
>ref|NP_033899.2| Krueppel-like factor 5 [Mus musculus].
Length = 446
Score = 57.0 bits (136), Expect = 2e-08
Identities = 25/36 (69%), Positives = 30/36 (83%), Gaps = 1/36 (2%)
Frame = +1
Query: 814 ASPD-GRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
++PD +RR+H C +NGC KVYTKSSHLKAH RTHT
Sbjct: 352 SNPDLEKRRIHFCDYNGCTKVYTKSSHLKAHLRTHT 387
>ref|NP_776141.1| Krueppel-like factor 8 [Mus musculus].
Length = 355
Score = 56.2 bits (134), Expect = 3e-08
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +1
Query: 829 RRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
RRR+H+C F GC KVYTKSSHLKAH+R HT
Sbjct: 266 RRRIHQCDFAGCSKVYTKSSHLKAHRRIHT 295
>ref|NP_001128565.1| Krueppel-like factor 14 [Mus musculus].
Length = 325
Score = 54.3 bits (129), Expect = 1e-07
Identities = 26/52 (50%), Positives = 31/52 (59%), Gaps = 7/52 (13%)
Frame = +1
Query: 784 GKPGDKGSGDASPDGRRRV-------HRCHFNGCRKVYTKSSHLKAHQRTHT 918
G PG + + P RRR H+C F+GC K Y KSSHLK+HQRTHT
Sbjct: 169 GPPGARPAPSTGPTYRRRQITPASKRHQCSFHGCNKAYYKSSHLKSHQRTHT 220
>ref|NP_034767.2| Krueppel-like factor 4 [Mus musculus].
Length = 483
Score = 53.5 bits (127), Expect = 2e-07
Identities = 29/58 (50%), Positives = 32/58 (55%)
Frame = +1
Query: 745 ELHPPGKARSGTAGKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
EL PPG S +P K + P R H C + GC K YTKSSHLKAH RTHT
Sbjct: 371 ELMPPG---SCLPEEPKPKRGRRSWPRKRTATHTCDYAGCGKTYTKSSHLKAHLRTHT 425
>ref|NP_001159857.1| transcription factor Sp4 isoform 2 [Mus musculus].
Length = 780
Score = 51.2 bits (121), Expect = 1e-06
Identities = 23/58 (39%), Positives = 32/58 (55%)
Frame = +1
Query: 745 ELHPPGKARSGTAGKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
E+ P + R P + +S G+++ H CH GC KVY K+SHL+AH R HT
Sbjct: 611 EVQPGKRLRRVACSCPNCREGEGSSEPGKKKQHVCHIEGCGKVYGKTSHLRAHLRWHT 668
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,799,116
Number of extensions: 920117
Number of successful extensions: 10429
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 10294
Number of HSP's successfully gapped: 19
Length of query: 306
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 205
Effective length of database: 12,583,923
Effective search space: 2579704215
Effective search space used: 2579704215
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009309
(920 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001153597.1| Krueppel-like factor 6 isoform C [Homo sapie... 341 5e-94
Alignment gi|NP_001291.3| Krueppel-like factor 6 isoform A [Homo sapiens]. 341 5e-94
Alignment gi|NP_001153596.1| Krueppel-like factor 6 isoform B [Homo sapie... 268 4e-72
Alignment gi|NP_003700.1| Krueppel-like factor 7 [Homo sapiens]. 86 4e-17
Alignment gi|NP_009180.3| Krueppel-like factor 12 [Homo sapiens]. 63 3e-10
Alignment gi|NP_057615.3| Krueppel-like factor 3 [Homo sapiens]. 62 7e-10
Alignment gi|NP_057079.2| Krueppel-like factor 13 [Homo sapiens]. 58 1e-08
Alignment gi|NP_009181.2| Krueppel-like factor 8 isoform 1 [Homo sapiens]. 56 4e-08
Alignment gi|NP_001721.2| Krueppel-like factor 5 [Homo sapiens]. 54 2e-07
Alignment gi|NP_114124.1| Krueppel-like factor 16 [Homo sapiens]. 54 2e-07
>ref|NP_001153597.1| Krueppel-like factor 6 isoform C [Homo sapiens].
Length = 237
Score = 341 bits (875), Expect = 5e-94
Identities = 168/225 (74%), Positives = 176/225 (78%)
Frame = +1
Query: 244 MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVSASEIKFDSQ 423
MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVSASEIKFDSQ
Sbjct: 1 MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVSASEIKFDSQ 60
Query: 424 EDLWTKIILAREQKEDADLKMSSSPPEDALNSPGFGYNLETXXXXXXXXXXXXXXXXXXX 603
EDLWTKIILARE+KE+++LK+SSSPPED L SP F YNLET
Sbjct: 61 EDLWTKIILAREKKEESELKISSSPPEDTLISPSFCYNLETNSLNSDVSSESSDSSEELS 120
Query: 604 PTTKFTSDPIGEVLVTSGNXXXXXXXXXXXXXXXXXXXXHLWGCVPGELHPPGKARSGTA 783
PT KFTSDPIGEVLV+SG LWGCVPGEL PGK RSGT+
Sbjct: 121 PTAKFTSDPIGEVLVSSGKLSSSVTSTPPSSPELSREPSQLWGCVPGELPSPGKVRSGTS 180
Query: 784 GKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
GKPGDKG+GDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT
Sbjct: 181 GKPGDKGNGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 225
>ref|NP_001291.3| Krueppel-like factor 6 isoform A [Homo sapiens].
Length = 283
Score = 341 bits (875), Expect = 5e-94
Identities = 168/225 (74%), Positives = 176/225 (78%)
Frame = +1
Query: 244 MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVSASEIKFDSQ 423
MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVSASEIKFDSQ
Sbjct: 1 MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVSASEIKFDSQ 60
Query: 424 EDLWTKIILAREQKEDADLKMSSSPPEDALNSPGFGYNLETXXXXXXXXXXXXXXXXXXX 603
EDLWTKIILARE+KE+++LK+SSSPPED L SP F YNLET
Sbjct: 61 EDLWTKIILAREKKEESELKISSSPPEDTLISPSFCYNLETNSLNSDVSSESSDSSEELS 120
Query: 604 PTTKFTSDPIGEVLVTSGNXXXXXXXXXXXXXXXXXXXXHLWGCVPGELHPPGKARSGTA 783
PT KFTSDPIGEVLV+SG LWGCVPGEL PGK RSGT+
Sbjct: 121 PTAKFTSDPIGEVLVSSGKLSSSVTSTPPSSPELSREPSQLWGCVPGELPSPGKVRSGTS 180
Query: 784 GKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
GKPGDKG+GDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT
Sbjct: 181 GKPGDKGNGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 225
>ref|NP_001153596.1| Krueppel-like factor 6 isoform B [Homo sapiens].
Length = 241
Score = 268 bits (686), Expect = 4e-72
Identities = 139/225 (61%), Positives = 151/225 (67%)
Frame = +1
Query: 244 MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVSASEIKFDSQ 423
MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVSASEIKFDSQ
Sbjct: 1 MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVSASEIKFDSQ 60
Query: 424 EDLWTKIILAREQKEDADLKMSSSPPEDALNSPGFGYNLETXXXXXXXXXXXXXXXXXXX 603
EDLWTKIILARE+KE+++LK+SSSPPED L SP F YNLET
Sbjct: 61 EDLWTKIILAREKKEESELKISSSPPEDTLISPSFCYNLETNSLNSDVSSESSDSSEELS 120
Query: 604 PTTKFTSDPIGEVLVTSGNXXXXXXXXXXXXXXXXXXXXHLWGCVPGELHPPGKARSGTA 783
PT KFTSDPIGEVLV+SG LWGCVPGEL PGK RSGT+
Sbjct: 121 PTAKFTSDPIGEVLVSSGKLSSSVTSTPPSSPELSREPSQLWGCVPGELPSPGKVRSGTS 180
Query: 784 GKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
GKPG+K +RC + GC + +S L H R HT
Sbjct: 181 GKPGEK------------PYRCSWEGCEWRFARSDELTRHFRKHT 213
>ref|NP_003700.1| Krueppel-like factor 7 [Homo sapiens].
Length = 302
Score = 86.3 bits (212), Expect = 4e-17
Identities = 41/51 (80%), Positives = 45/51 (88%)
Frame = +1
Query: 244 MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVS 396
MDVL SIFQELQ+VH+TGYFSALPSLEE WQQTCLELERYLQ+EP +S
Sbjct: 1 MDVLASYSIFQELQLVHDTGYFSALPSLEETWQQTCLELERYLQTEPRRIS 51
Score = 73.2 bits (178), Expect = 3e-13
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = +1
Query: 760 GKARSGTAGKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
G +SG + +A P+ ++RVHRC FNGCRKVYTKSSHLKAHQRTHT
Sbjct: 192 GAVKSGQSDSDQGGLGAEACPENKKRVHRCQFNGCRKVYTKSSHLKAHQRTHT 244
>ref|NP_009180.3| Krueppel-like factor 12 [Homo sapiens].
Length = 402
Score = 63.2 bits (152), Expect = 3e-10
Identities = 28/35 (80%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
Frame = +1
Query: 817 SPDGR-RRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
SPD R RR+HRC F GC KVYTKSSHLKAH+RTHT
Sbjct: 308 SPDSRKRRIHRCDFEGCNKVYTKSSHLKAHRRTHT 342
>ref|NP_057615.3| Krueppel-like factor 3 [Homo sapiens].
Length = 345
Score = 62.0 bits (149), Expect = 7e-10
Identities = 28/46 (60%), Positives = 35/46 (76%), Gaps = 2/46 (4%)
Frame = +1
Query: 787 KPGDKGSGDASPDG--RRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
+PG + SPD +RR+HRC ++GC KVYTKSSHLKAH+RTHT
Sbjct: 240 QPGKRPLPVESPDTQRKRRIHRCDYDGCNKVYTKSSHLKAHRRTHT 285
>ref|NP_057079.2| Krueppel-like factor 13 [Homo sapiens].
Length = 288
Score = 58.2 bits (139), Expect = 1e-08
Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Frame = +1
Query: 757 PGKARSGTAG--KPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
PG A SG G + +G A + +R H+CH+ GC KVY KSSHLKAH RTHT
Sbjct: 137 PGPAGSGEPGLRQRVRRGRSRADLESPQRKHKCHYAGCEKVYGKSSHLKAHLRTHT 192
>ref|NP_009181.2| Krueppel-like factor 8 isoform 1 [Homo sapiens].
Length = 359
Score = 56.2 bits (134), Expect = 4e-08
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +1
Query: 829 RRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
RRR+H+C F GC KVYTKSSHLKAH+R HT
Sbjct: 270 RRRIHQCDFAGCSKVYTKSSHLKAHRRIHT 299
>ref|NP_001721.2| Krueppel-like factor 5 [Homo sapiens].
Length = 457
Score = 54.3 bits (129), Expect = 2e-07
Identities = 24/36 (66%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
Frame = +1
Query: 814 ASPD-GRRRVHRCHFNGCRKVYTKSSHLKAHQRTHT 918
++PD +RR+H C + GC KVYTKSSHLKAH RTHT
Sbjct: 363 SNPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHT 398
>ref|NP_114124.1| Krueppel-like factor 16 [Homo sapiens].
Length = 252
Score = 53.9 bits (128), Expect = 2e-07
Identities = 27/63 (42%), Positives = 31/63 (49%)
Frame = +1
Query: 730 GCVPGELHPPGKARSGTAGKPGDKGSGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQR 909
G PG P S A P + A+P + HRC F C K Y KSSHLK+H R
Sbjct: 92 GAAPGGASPASS--SSAASSPSSGRAPGAAPSAAAKSHRCPFPDCAKAYYKSSHLKSHLR 149
Query: 910 THT 918
THT
Sbjct: 150 THT 152
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,641,537
Number of extensions: 1099624
Number of successful extensions: 12959
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 12860
Number of HSP's successfully gapped: 25
Length of query: 306
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,934,836
Effective search space: 3046706544
Effective search space used: 3046706544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009309
(920 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 1098 0.0
Sscrofa_Chr15 58 9e-06
>Sscrofa_Chr10
|| Length = 79102373
Score = 1098 bits (554), Expect = 0.0
Identities = 571/579 (98%)
Strand = Plus / Plus
Query: 342 acagacctgcctggagttggagcgttacctccagagcgaaccctgctatgtgtcagcctc 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72995488 acagacctgcctggagttggagcgttacctccagagcgaaccctgctatgtgtcagcctc 72995547
Query: 402 tgaaatcaaattcgacagccaggaagacctgtggaccaaaatcatcctggcgcgggagca 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72995548 tgaaatcaaattcgacagccaggaagacctgtggaccaaaatcatcctggcgcgggagca 72995607
Query: 462 aaaggaggatgcggacctgaagatgtcctccagnnnnnnngaggatgctctcaacagccc 521
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 72995608 aaaggaggatgcggacctgaagatgtcctccagcccccccgaggatgctctcaacagccc 72995667
Query: 522 cggctttggctacaacctggagaccaacagcctgaactcggacgtgagcagcgaatcgtc 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72995668 cggctttggctacaacctggagaccaacagcctgaactcggacgtgagcagcgaatcgtc 72995727
Query: 582 cgacagctccgaggagctgtcccccaccaccaagtttacctccgaccccatcggcgaagt 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72995728 cgacagctccgaggagctgtcccccaccaccaagtttacctccgaccccatcggcgaagt 72995787
Query: 642 tttagtcacttcggggaacctgagctcctccgtcacctccacgcccccttcttcgccaga 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72995788 tttagtcacttcggggaacctgagctcctccgtcacctccacgcccccttcttcgccaga 72995847
Query: 702 actgagcagggagccgtctcacctgtggggctgtgtgcccggcgagctgcacccgccggg 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72995848 actgagcagggagccgtctcacctgtggggctgtgtgcccggcgagctgcacccgccggg 72995907
Query: 762 gaaggcgcgcagcgggactgcggggaagccaggcgacaagggcagcggggacgcgtcccc 821
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 72995908 gaaggcgcgcagcgggactgcggggaagccaggcgacaagggcagcggggacgtgtcccc 72995967
Query: 822 ggacggccgcagaagggtgcatcggtgccactttaacggctgccggaaagtttacaccaa 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72995968 ggacggccgcagaagggtgcatcggtgccactttaacggctgccggaaagtttacaccaa 72996027
Query: 882 aagctcccacttgaaagcacatcagcgcacccacacagg 920
|||||||||||||||||||||||||||||||||||||||
Sbjct: 72996028 aagctcccacttgaaagcacatcagcgcacccacacagg 72996066
Score = 652 bits (329), Expect = 0.0
Identities = 332/333 (99%)
Strand = Plus / Plus
Query: 13 ggaagtcttgcaggggttacgtttgcagtcagtccggtgtttgcaaatattgtgtgggct 72
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72992310 ggaagttttgcaggggttacgtttgcagtcagtccggtgtttgcaaatattgtgtgggct 72992369
Query: 73 cgagagtgcgtctccgggctccggcaggatccgaacccgcggcgcctaattgctgcgcac 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72992370 cgagagtgcgtctccgggctccggcaggatccgaacccgcggcgcctaattgctgcgcac 72992429
Query: 133 tgagtttgcatgaacttccccggcgctgcaggcacgactgctgcgctcccgactccagac 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72992430 tgagtttgcatgaacttccccggcgctgcaggcacgactgctgcgctcccgactccagac 72992489
Query: 193 cgcacacctccctgtttttacaacagcagtgactgtcttttccaacccgacatggatgtg 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72992490 cgcacacctccctgtttttacaacagcagtgactgtcttttccaacccgacatggatgtg 72992549
Query: 253 ctcccaatgtgcagcatcttccaggaactccagattgtgcacgagactggttacttctcg 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72992550 ctcccaatgtgcagcatcttccaggaactccagattgtgcacgagactggttacttctcg 72992609
Query: 313 gcgctgccctccctggaggaatattggcaacag 345
|||||||||||||||||||||||||||||||||
Sbjct: 72992610 gcgctgccctccctggaggaatattggcaacag 72992642
>Sscrofa_Chr15
|| Length = 157681621
Score = 58.0 bits (29), Expect = 9e-06
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 853 tttaacggctgccggaaagtttacaccaaaagctcccactt 893
|||||||| |||||||||||||| || ||||||||||||||
Sbjct: 121891882 tttaacgggtgccggaaagtttatacaaaaagctcccactt 121891842
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,907,062
Number of extensions: 82
Number of successful extensions: 82
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 3
Length of query: 920
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 899
Effective length of database: 2,808,413,156
Effective search space: 2524763427244
Effective search space used: 2524763427244
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)