Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009312
(945 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069161.1| 26S proteasome non-ATPase regulatory subunit... 476 e-134
>ref|NP_001069161.1| 26S proteasome non-ATPase regulatory subunit 5 [Bos taurus].
Length = 503
Score = 476 bits (1224), Expect = e-134
Identities = 253/278 (91%), Positives = 258/278 (92%)
Frame = +3
Query: 21 MAAQVLALLREVSXXXXXXXXXXXXQSVLQSVPLSELREHAAELHLGPLFSLLNENHREQ 200
MAAQ LALLREVS QS+LQSVPLSELRE AAEL LGPLFSLLNENHREQ
Sbjct: 1 MAAQALALLREVSRLEAPLEELRALQSLLQSVPLSELREQAAELRLGPLFSLLNENHREQ 60
Query: 201 TTLCVSILERLLQALEPVHVARNLKVDLQRGLTHTNDSVKILTLSQVGRIVDNSDAVTEI 380
TTLCVSILERLLQALEPVHVARNL+VDLQRGLTH NDSVKILTLSQVGRIV+NSDAVTEI
Sbjct: 61 TTLCVSILERLLQALEPVHVARNLRVDLQRGLTHPNDSVKILTLSQVGRIVENSDAVTEI 120
Query: 381 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI 560
LNNAELLKQIVYCIGGENLSVAK AIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI
Sbjct: 121 LNNAELLKQIVYCIGGENLSVAKTAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI 180
Query: 561 VRYRVYELIVEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG 740
VRYRVYELIVEISSVSPESLN CTTSGLVTQLLRELTGEDVLVRATCIEMVTSLA THHG
Sbjct: 181 VRYRVYELIVEISSVSPESLNCCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLACTHHG 240
Query: 741 RQYLAQERVIDQISNIIVGAESDPFSSFYLPGFVKFFG 854
RQYLAQE VIDQISNIIVGA++DPFSSFYLPGFVKFFG
Sbjct: 241 RQYLAQEGVIDQISNIIVGADADPFSSFYLPGFVKFFG 278
Score = 63.5 bits (153), Expect = 3e-10
Identities = 30/45 (66%), Positives = 33/45 (73%)
Frame = +2
Query: 809 PFL*LLFARICEVFWNLXIMDSPQQICERYPVFVEKVFEMTESQD 943
PF + F NL IMDSPQQICERYP+F+EKVFEMTESQD
Sbjct: 264 PFSSFYLPGFVKFFGNLAIMDSPQQICERYPIFMEKVFEMTESQD 308
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,712,851
Number of extensions: 667816
Number of successful extensions: 1628
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1626
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 213
Effective length of database: 14,306,398
Effective search space: 3047262774
Effective search space used: 3047262774
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009312
(945 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531929.2| PREDICTED: similar to 26S proteasome non-ATPase... 444 e-125
Alignment gi|XP_853353.1| PREDICTED: similar to 26S proteasome non-ATPase... 364 e-101
>ref|XP_531929.2| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit
5 (26S proteasome subunit S5B) (26S protease subunit S5
basic) [Canis familiaris].
Length = 523
Score = 444 bits (1142), Expect = e-125
Identities = 230/252 (91%), Positives = 241/252 (95%)
Frame = +3
Query: 99 SVLQSVPLSELREHAAELHLGPLFSLLNENHREQTTLCVSILERLLQALEPVHVARNLKV 278
SVLQ+VPL ELR AAEL LGPLFSLL+E+HREQTTLCVSILERLLQA+EPVH+ARNL
Sbjct: 46 SVLQTVPLGELRAPAAELRLGPLFSLLHEDHREQTTLCVSILERLLQAMEPVHIARNLGA 105
Query: 279 DLQRGLTHTNDSVKILTLSQVGRIVDNSDAVTEILNNAELLKQIVYCIGGENLSVAKAAI 458
DLQ+GLTH +DSVKILTLSQVGRIV+NSDAVTEILNN ELLKQIVYCIGG+NLSVAKAAI
Sbjct: 106 DLQKGLTHPDDSVKILTLSQVGRIVENSDAVTEILNNGELLKQIVYCIGGDNLSVAKAAI 165
Query: 459 KSLSRISLTQAGLEALFESNLLDDLKSVMKTNDIVRYRVYELIVEISSVSPESLNYCTTS 638
KSLS+ISLTQAGLEALFESNLLDDLK VMKTNDIVRYRVYELIVEISSVSPESL YCTTS
Sbjct: 166 KSLSKISLTQAGLEALFESNLLDDLKRVMKTNDIVRYRVYELIVEISSVSPESLTYCTTS 225
Query: 639 GLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHGRQYLAQERVIDQISNIIVGAESDPFS 818
GLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHGRQYLAQE VIDQISNIIVGA+SDPFS
Sbjct: 226 GLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHGRQYLAQEGVIDQISNIIVGADSDPFS 285
Query: 819 SFYLPGFVKFFG 854
SFYLPGFVKFFG
Sbjct: 286 SFYLPGFVKFFG 297
Score = 65.1 bits (157), Expect = 9e-11
Identities = 32/45 (71%), Positives = 33/45 (73%)
Frame = +2
Query: 809 PFL*LLFARICEVFWNLXIMDSPQQICERYPVFVEKVFEMTESQD 943
PF + F NL IMDSPQQICERYPVFVEKVFEMTESQD
Sbjct: 283 PFSSFYLPGFVKFFGNLAIMDSPQQICERYPVFVEKVFEMTESQD 327
>ref|XP_853353.1| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit
5 (26S proteasome subunit S5B) (26S protease subunit S5
basic) [Canis familiaris].
Length = 509
Score = 364 bits (934), Expect = e-101
Identities = 197/252 (78%), Positives = 208/252 (82%)
Frame = +3
Query: 99 SVLQSVPLSELREHAAELHLGPLFSLLNENHREQTTLCVSILERLLQALEPVHVARNLKV 278
SVLQ+VPL ELR AAEL LGPLFSLL+E+HREQTTLCVSILERLLQA+EPVH+ARNL
Sbjct: 65 SVLQTVPLGELRAPAAELRLGPLFSLLHEDHREQTTLCVSILERLLQAMEPVHIARNLGA 124
Query: 279 DLQRGLTHTNDSVKILTLSQVGRIVDNSDAVTEILNNAELLKQIVYCIGGENLSVAKAAI 458
DLQ+GLTH +DSVKILTLSQVGRIV+NSDAVTEILNN ELLKQIVYCIGG+NLSVAKAAI
Sbjct: 125 DLQKGLTHPDDSVKILTLSQVGRIVENSDAVTEILNNGELLKQIVYCIGGDNLSVAKAAI 184
Query: 459 KSLSRISLTQAGLEALFESNLLDDLKSVMKTNDIVRYRVYELIVEISSVSPESLNYCTTS 638
KSLS+ISLTQAGLEALFESNLLDDLK
Sbjct: 185 KSLSKISLTQAGLEALFESNLLDDLKG--------------------------------- 211
Query: 639 GLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHGRQYLAQERVIDQISNIIVGAESDPFS 818
GLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHGRQYLAQE VIDQISNIIVGA+SDPFS
Sbjct: 212 GLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHGRQYLAQEGVIDQISNIIVGADSDPFS 271
Query: 819 SFYLPGFVKFFG 854
SFYLPG VKFFG
Sbjct: 272 SFYLPGLVKFFG 283
Score = 65.9 bits (159), Expect = 5e-11
Identities = 32/45 (71%), Positives = 34/45 (75%)
Frame = +2
Query: 809 PFL*LLFARICEVFWNLXIMDSPQQICERYPVFVEKVFEMTESQD 943
PF + + F NL IMDSPQQICERYPVFVEKVFEMTESQD
Sbjct: 269 PFSSFYLPGLVKFFGNLAIMDSPQQICERYPVFVEKVFEMTESQD 313
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,048,827
Number of extensions: 688942
Number of successful extensions: 1625
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1625
Number of HSP's successfully gapped: 4
Length of query: 315
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 212
Effective length of database: 15,440,896
Effective search space: 3273469952
Effective search space used: 3273469952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009312
(945 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353679.1| PREDICTED: 26S proteasome non-ATPase regulat... 248 5e-66
Alignment gi|XP_001925536.3| PREDICTED: 26S proteasome non-ATPase regulat... 180 1e-45
>ref|XP_003353679.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 5-like [Sus
scrofa].
Length = 235
Score = 248 bits (632), Expect = 5e-66
Identities = 132/146 (90%), Positives = 133/146 (91%)
Frame = +3
Query: 21 MAAQVLALLREVSXXXXXXXXXXXXQSVLQSVPLSELREHAAELHLGPLFSLLNENHREQ 200
MAAQVLALLREVS QSVLQSVPLSELREHAAELHLGPLFSLLNENHREQ
Sbjct: 1 MAAQVLALLREVSRLEAPLEELRALQSVLQSVPLSELREHAAELHLGPLFSLLNENHREQ 60
Query: 201 TTLCVSILERLLQALEPVHVARNLKVDLQRGLTHTNDSVKILTLSQVGRIVDNSDAVTEI 380
TTLCVSILERLLQALEPVHVARNLKVDLQRGLTHTNDSVKILTLSQVGRIVDNSDAVTEI
Sbjct: 61 TTLCVSILERLLQALEPVHVARNLKVDLQRGLTHTNDSVKILTLSQVGRIVDNSDAVTEI 120
Query: 381 LNNAELLKQIVYCIGGENLSVAKAAI 458
LNNAELLKQIVYCIGGENLSVAKA +
Sbjct: 121 LNNAELLKQIVYCIGGENLSVAKATM 146
>ref|XP_001925536.3| PREDICTED: 26S proteasome non-ATPase regulatory subunit 5 [Sus
scrofa].
Length = 457
Score = 180 bits (456), Expect = 1e-45
Identities = 90/94 (95%), Positives = 92/94 (97%)
Frame = +3
Query: 573 VYELIVEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHGRQYL 752
V+ LIVEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHGRQYL
Sbjct: 199 VFSLIVEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHGRQYL 258
Query: 753 AQERVIDQISNIIVGAESDPFSSFYLPGFVKFFG 854
AQE VIDQISNIIVGA+SDPFSSFYLPGFVKFFG
Sbjct: 259 AQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFG 292
Score = 65.1 bits (157), Expect = 5e-11
Identities = 32/45 (71%), Positives = 33/45 (73%)
Frame = +2
Query: 809 PFL*LLFARICEVFWNLXIMDSPQQICERYPVFVEKVFEMTESQD 943
PF + F NL IMDSPQQICERYPVFVEKVFEMTESQD
Sbjct: 278 PFSSFYLPGFVKFFGNLAIMDSPQQICERYPVFVEKVFEMTESQD 322
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,068,400
Number of extensions: 423923
Number of successful extensions: 992
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 992
Number of HSP's successfully gapped: 3
Length of query: 315
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 216
Effective length of database: 8,879,129
Effective search space: 1917891864
Effective search space used: 1917891864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009312
(945 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_542121.2| 26S proteasome non-ATPase regulatory subunit 5 ... 451 e-127
>ref|NP_542121.2| 26S proteasome non-ATPase regulatory subunit 5 [Mus musculus].
Length = 504
Score = 451 bits (1161), Expect = e-127
Identities = 233/278 (83%), Positives = 255/278 (91%)
Frame = +3
Query: 21 MAAQVLALLREVSXXXXXXXXXXXXQSVLQSVPLSELREHAAELHLGPLFSLLNENHREQ 200
MAAQ ++LLREV+ QSV+Q+VPL ELRE AAEL L PLFSLLN+N+REQ
Sbjct: 1 MAAQAVSLLREVARLEAPLEELRALQSVVQAVPLHELREQAAELRLRPLFSLLNQNNREQ 60
Query: 201 TTLCVSILERLLQALEPVHVARNLKVDLQRGLTHTNDSVKILTLSQVGRIVDNSDAVTEI 380
T LCVSILERLLQA+EP+H+ARNL++DLQRGLTH +DSVK LTLSQ+GRIV+NS+AVTEI
Sbjct: 61 TALCVSILERLLQAVEPIHLARNLRLDLQRGLTHPDDSVKTLTLSQIGRIVENSEAVTEI 120
Query: 381 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI 560
LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLK+VMKTND+
Sbjct: 121 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKNVMKTNDV 180
Query: 561 VRYRVYELIVEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG 740
VRYRVYELI++ISSVS ESLNYCTTSGLVTQLL+ELTGEDVLVRATCIEMVTSLAYTHHG
Sbjct: 181 VRYRVYELIIDISSVSSESLNYCTTSGLVTQLLKELTGEDVLVRATCIEMVTSLAYTHHG 240
Query: 741 RQYLAQERVIDQISNIIVGAESDPFSSFYLPGFVKFFG 854
RQYLAQE VIDQISNIIVGA+SDPFS FYLPGFVKFFG
Sbjct: 241 RQYLAQEGVIDQISNIIVGADSDPFSGFYLPGFVKFFG 278
Score = 60.5 bits (145), Expect = 2e-09
Identities = 28/45 (62%), Positives = 32/45 (71%)
Frame = +2
Query: 809 PFL*LLFARICEVFWNLXIMDSPQQICERYPVFVEKVFEMTESQD 943
PF + F NL +MDSPQQICERYPVF+EKVFEM +SQD
Sbjct: 264 PFSGFYLPGFVKFFGNLAVMDSPQQICERYPVFLEKVFEMADSQD 308
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,096,756
Number of extensions: 584378
Number of successful extensions: 1461
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1457
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 214
Effective length of database: 12,583,923
Effective search space: 2692959522
Effective search space used: 2692959522
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009312
(945 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005038.1| 26S proteasome non-ATPase regulatory subunit 5 ... 473 e-133
>ref|NP_005038.1| 26S proteasome non-ATPase regulatory subunit 5 [Homo sapiens].
Length = 504
Score = 473 bits (1216), Expect = e-133
Identities = 247/278 (88%), Positives = 259/278 (93%)
Frame = +3
Query: 21 MAAQVLALLREVSXXXXXXXXXXXXQSVLQSVPLSELREHAAELHLGPLFSLLNENHREQ 200
MAAQ LALLREV+ SVLQ+VPL+ELR+ AAEL LGPLFSLLNENHRE+
Sbjct: 1 MAAQALALLREVARLEAPLEELRALHSVLQAVPLNELRQQAAELRLGPLFSLLNENHREK 60
Query: 201 TTLCVSILERLLQALEPVHVARNLKVDLQRGLTHTNDSVKILTLSQVGRIVDNSDAVTEI 380
TTLCVSILERLLQA+EPVHVARNL+VDLQRGL H +DSVKILTLSQ+GRIV+NSDAVTEI
Sbjct: 61 TTLCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSDAVTEI 120
Query: 381 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI 560
LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI
Sbjct: 121 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI 180
Query: 561 VRYRVYELIVEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG 740
VRYRVYELI+EISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG
Sbjct: 181 VRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG 240
Query: 741 RQYLAQERVIDQISNIIVGAESDPFSSFYLPGFVKFFG 854
RQYLAQE VIDQISNIIVGA+SDPFSSFYLPGFVKFFG
Sbjct: 241 RQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFG 278
Score = 62.0 bits (149), Expect = 8e-10
Identities = 29/45 (64%), Positives = 32/45 (71%)
Frame = +2
Query: 809 PFL*LLFARICEVFWNLXIMDSPQQICERYPVFVEKVFEMTESQD 943
PF + F NL +MDSPQQICERYP+FVEKVFEM ESQD
Sbjct: 264 PFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKVFEMIESQD 308
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,532,479
Number of extensions: 685564
Number of successful extensions: 1553
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1553
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 213
Effective length of database: 14,934,836
Effective search space: 3181120068
Effective search space used: 3181120068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009312
(945 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 377 e-102
>Sscrofa_Chr01
|| Length = 315321322
Score = 377 bits (190), Expect = e-102
Identities = 190/190 (100%)
Strand = Plus / Plus
Query: 5 ggcgggagggggcaagatggcggcccaggtgctggcgctcctgagggaggtgtcgcggct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292950947 ggcgggagggggcaagatggcggcccaggtgctggcgctcctgagggaggtgtcgcggct 292951006
Query: 65 ggaggcgccgctggaggagctgcgcgctctgcaatcggtgctgcagtcggtgccactcag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292951007 ggaggcgccgctggaggagctgcgcgctctgcaatcggtgctgcagtcggtgccactcag 292951066
Query: 125 cgagctccgtgagcatgctgcggaactgcacctcggtccgcttttctccctgctcaacga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292951067 cgagctccgtgagcatgctgcggaactgcacctcggtccgcttttctccctgctcaacga 292951126
Query: 185 gaaccatcgg 194
||||||||||
Sbjct: 292951127 gaaccatcgg 292951136
Score = 295 bits (149), Expect = 2e-77
Identities = 152/153 (99%)
Strand = Plus / Plus
Query: 193 gggaacagactactttgtgtgtatccatcctggagagattgcttcaagctttagagccag 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292955163 gggaacagactactttgtgtgtatccatcctggagagattgcttcaagctttagagccag 292955222
Query: 253 ttcacgtggctcggaacctcaaggttgacctgcagaggggacttactcataccaatgatt 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292955223 ttcacgtggctcggaacctcaaggttgacctgcagaggggacttactcataccaatgatt 292955282
Query: 313 ctgtaaaaatcctcactctgtcccaggttggaa 345
|||||||||||||||||||||||||||| ||||
Sbjct: 292955283 ctgtaaaaatcctcactctgtcccaggtaggaa 292955315
Score = 278 bits (140), Expect = 5e-72
Identities = 146/148 (98%)
Strand = Plus / Plus
Query: 688 tcagagccacctgtatagagatggtgacatcactggcatatactcatcatggacgacagt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292960360 tcagagccacctgtatagagatggtgacatcactggcatatactcatcatggacgacagt 292960419
Query: 748 accttgctcaagaaagagtcattgaccagatttctaatataattgttggggcggaatcag 807
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 292960420 accttgctcaagaaggagtcattgaccagatttctaatataattgttggggcggattcag 292960479
Query: 808 accctttctctagcttctatttgccagg 835
||||||||||||||||||||||||||||
Sbjct: 292960480 accctttctctagcttctatttgccagg 292960507
Score = 234 bits (118), Expect = 7e-59
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 336 caggttggaagaattgttgacaattctgatgctgttactgagattctaaataatgctgaa 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292956545 caggttggaagaattgttgacaattctgatgctgttactgagattctaaataatgctgaa 292956604
Query: 396 ttactaaaacaaatcgtttattgtattggtggagagaatctgtctgtagctaaagcgg 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292956605 ttactaaaacaaatcgtttattgtattggtggagagaatctgtctgtagctaaagcgg 292956662
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 580 agctaattgtggagatttcctccgtgtcaccagaatctttaaactactgtaccaccagtg 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292957709 agctaattgtggagatttcctccgtgtcaccagaatctttaaactactgtaccaccagtg 292957768
Query: 640 gattggtaacacagctcctccgagaactgaccggtgaggatgtgctggtcag 691
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292957769 gattggtaacacagctcctccgagaactgaccggtgaggatgtgctggtcag 292957820
Score = 204 bits (103), Expect = 6e-50
Identities = 112/114 (98%), Gaps = 1/114 (0%)
Strand = Plus / Plus
Query: 833 aggatttgtgaagttttttggaa-cctgnctatcatggatagtcctcaacaaatctgtga 891
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 292961246 aggatttgtgaagttttttggaaacctggctatcatggatagtcctcaacaaatctgtga 292961305
Query: 892 gcgttatcctgtctttgtggagaaagtctttgaaatgacagaaagtcaggaccc 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292961306 gcgttatcctgtctttgtggagaaagtctttgaaatgacagaaagtcaggaccc 292961359
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,168,682
Number of extensions: 138
Number of successful extensions: 138
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 6
Length of query: 945
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 924
Effective length of database: 2,808,413,156
Effective search space: 2594973756144
Effective search space used: 2594973756144
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)