Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009313
(1111 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068820.1| probable methylthioribulose-1-phosphate dehy... 481 e-136
>ref|NP_001068820.1| probable methylthioribulose-1-phosphate dehydratase [Bos taurus].
Length = 242
Score = 481 bits (1238), Expect = e-136
Identities = 226/242 (93%), Positives = 233/242 (96%)
Frame = +2
Query: 137 MSGCHAPEGDCGSRQCLAQDKEHPRYLIPELCKQFYHLGWVTGTGGGISLKHGNEIYIAP 316
MSG HAPEGDC RQC AQDKEHPRYLIPELCKQFYHLGWVTGTGGGISLKHGNEIYIAP
Sbjct: 1 MSGSHAPEGDCCLRQCRAQDKEHPRYLIPELCKQFYHLGWVTGTGGGISLKHGNEIYIAP 60
Query: 317 SGVQKERIQPEDMFVCDIDEQDISGPPPHKNLKKSQCTPLFMNAYTMRGAGAVIHTHSKA 496
SGVQKERIQPEDMFVCDI+E+DISGPPP KNLKKSQCTPLFMNAYTMR AGAVIHTHSKA
Sbjct: 61 SGVQKERIQPEDMFVCDINEKDISGPPPSKNLKKSQCTPLFMNAYTMREAGAVIHTHSKA 120
Query: 497 AVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKERMARA 676
AVMATL+FPG+EFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKERMARA
Sbjct: 121 AVMATLVFPGKEFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKERMARA 180
Query: 677 MNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDVAVSMKKVGLDPTQLPVGENG 856
+N+YPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDVAVSMK+ GLDP QLP GENG
Sbjct: 181 VNDYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDVAVSMKQAGLDPAQLPAGENG 240
Query: 857 IV 862
IV
Sbjct: 241 IV 242
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,481,146
Number of extensions: 1254185
Number of successful extensions: 4014
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4014
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 266
Effective length of database: 14,240,222
Effective search space: 3787899052
Effective search space used: 3787899052
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009313
(1111 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533154.2| PREDICTED: similar to APAF1 interacting protein... 385 e-114
>ref|XP_533154.2| PREDICTED: similar to APAF1 interacting protein [Canis familiaris].
Length = 285
Score = 385 bits (990), Expect(2) = e-114
Identities = 183/189 (96%), Positives = 188/189 (99%)
Frame = +2
Query: 296 NEIYIAPSGVQKERIQPEDMFVCDIDEQDISGPPPHKNLKKSQCTPLFMNAYTMRGAGAV 475
+EIYIAPSGVQKERIQPEDMFVCDI+EQDISGPPP KNLKKSQCTPLFMNAYTMRGAGAV
Sbjct: 97 DEIYIAPSGVQKERIQPEDMFVCDINEQDISGPPPSKNLKKSQCTPLFMNAYTMRGAGAV 156
Query: 476 IHTHSKAAVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDL 655
IHTHSKAAVMATLLFPGREFKITHQEMIKGI+KCTSGGYYRYDDMLVVPIIENTPEEKDL
Sbjct: 157 IHTHSKAAVMATLLFPGREFKITHQEMIKGIRKCTSGGYYRYDDMLVVPIIENTPEEKDL 216
Query: 656 KERMARAMNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDVAVSMKKVGLDPTQ 835
KERMARA+NEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFD+AVSMKKVGLDPTQ
Sbjct: 217 KERMARAINEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAVSMKKVGLDPTQ 276
Query: 836 LPVGENGIV 862
LPVGENGIV
Sbjct: 277 LPVGENGIV 285
Score = 47.0 bits (110), Expect(2) = e-114
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 12/72 (16%)
Frame = +3
Query: 12 PASGLPSTPPDCI------------SGLAVLAPTEGREQSLAKTGGRGYLCSRPCLAVTL 155
P S + + PP C +G +V TE + AK GGRG S PC A TL
Sbjct: 24 PPSAVSAPPPGCPRRRLIAVAASPRTGRSVAGGTERGSRGRAKLGGRGLASSGPCRAATL 83
Query: 156 QRETVARGNASR 191
+RET AR A+R
Sbjct: 84 RRETAARAGAAR 95
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,217,053
Number of extensions: 1254859
Number of successful extensions: 4143
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4142
Number of HSP's successfully gapped: 2
Length of query: 370
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 266
Effective length of database: 15,407,560
Effective search space: 4098410960
Effective search space used: 4098410960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009313
(1111 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122918.1| PREDICTED: probable methylthioribulose-1-pho... 512 e-145
>ref|XP_003122918.1| PREDICTED: probable methylthioribulose-1-phosphate dehydratase-like
[Sus scrofa].
Length = 242
Score = 512 bits (1319), Expect = e-145
Identities = 241/242 (99%), Positives = 241/242 (99%)
Frame = +2
Query: 137 MSGCHAPEGDCGSRQCLAQDKEHPRYLIPELCKQFYHLGWVTGTGGGISLKHGNEIYIAP 316
MSGCHAPEGDC SRQCLAQDKEHPRYLIPELCKQFYHLGWVTGTGGGISLKHGNEIYIAP
Sbjct: 1 MSGCHAPEGDCSSRQCLAQDKEHPRYLIPELCKQFYHLGWVTGTGGGISLKHGNEIYIAP 60
Query: 317 SGVQKERIQPEDMFVCDIDEQDISGPPPHKNLKKSQCTPLFMNAYTMRGAGAVIHTHSKA 496
SGVQKERIQPEDMFVCDIDEQDISGPPPHKNLKKSQCTPLFMNAYTMRGAGAVIHTHSKA
Sbjct: 61 SGVQKERIQPEDMFVCDIDEQDISGPPPHKNLKKSQCTPLFMNAYTMRGAGAVIHTHSKA 120
Query: 497 AVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKERMARA 676
AVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKERMARA
Sbjct: 121 AVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKERMARA 180
Query: 677 MNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDVAVSMKKVGLDPTQLPVGENG 856
MNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDVAVSMKKVGLDPTQLPVGENG
Sbjct: 181 MNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDVAVSMKKVGLDPTQLPVGENG 240
Query: 857 IV 862
IV
Sbjct: 241 IV 242
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,383,787
Number of extensions: 861378
Number of successful extensions: 2494
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2493
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 270
Effective length of database: 8,854,232
Effective search space: 2390642640
Effective search space used: 2390642640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009313
(1111 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062709.3| probable methylthioribulose-1-phosphate dehydra... 476 e-134
>ref|NP_062709.3| probable methylthioribulose-1-phosphate dehydratase [Mus musculus].
Length = 241
Score = 476 bits (1224), Expect = e-134
Identities = 226/242 (93%), Positives = 233/242 (96%)
Frame = +2
Query: 137 MSGCHAPEGDCGSRQCLAQDKEHPRYLIPELCKQFYHLGWVTGTGGGISLKHGNEIYIAP 316
MSGC A +GDC SR C AQDKEHPR+LIPELCKQFYHLGWVTGTGGGISLKHGNEIYIAP
Sbjct: 1 MSGCQA-QGDCCSRPCGAQDKEHPRFLIPELCKQFYHLGWVTGTGGGISLKHGNEIYIAP 59
Query: 317 SGVQKERIQPEDMFVCDIDEQDISGPPPHKNLKKSQCTPLFMNAYTMRGAGAVIHTHSKA 496
SGVQKERIQPEDMFVCDI+EQDISGPP K LKKSQCTPLFMNAYTMRGAGAVIHTHSKA
Sbjct: 60 SGVQKERIQPEDMFVCDINEQDISGPPASKKLKKSQCTPLFMNAYTMRGAGAVIHTHSKA 119
Query: 497 AVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKERMARA 676
AVMATLLFPG+EFKITHQEMIKGI+KCTSGGYYRYDDMLVVPIIENTPEEKDLKERMA A
Sbjct: 120 AVMATLLFPGQEFKITHQEMIKGIRKCTSGGYYRYDDMLVVPIIENTPEEKDLKERMAHA 179
Query: 677 MNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDVAVSMKKVGLDPTQLPVGENG 856
MNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFD+AVSMKK+GLDPTQLPVGENG
Sbjct: 180 MNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAVSMKKMGLDPTQLPVGENG 239
Query: 857 IV 862
IV
Sbjct: 240 IV 241
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,698,455
Number of extensions: 1036756
Number of successful extensions: 3155
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3152
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 267
Effective length of database: 12,523,851
Effective search space: 3343868217
Effective search space used: 3343868217
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009313
(1111 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057041.2| probable methylthioribulose-1-phosphate dehydra... 480 e-136
>ref|NP_057041.2| probable methylthioribulose-1-phosphate dehydratase [Homo sapiens].
Length = 242
Score = 480 bits (1236), Expect = e-136
Identities = 227/242 (93%), Positives = 234/242 (96%)
Frame = +2
Query: 137 MSGCHAPEGDCGSRQCLAQDKEHPRYLIPELCKQFYHLGWVTGTGGGISLKHGNEIYIAP 316
MSGC A EGDC SR+C AQDKEHPRYLIPELCKQFYHLGWVTGTGGGISLKHG+EIYIAP
Sbjct: 1 MSGCDAREGDCCSRRCGAQDKEHPRYLIPELCKQFYHLGWVTGTGGGISLKHGDEIYIAP 60
Query: 317 SGVQKERIQPEDMFVCDIDEQDISGPPPHKNLKKSQCTPLFMNAYTMRGAGAVIHTHSKA 496
SGVQKERIQPEDMFVCDI+E+DISGP P K LKKSQCTPLFMNAYTMRGAGAVIHTHSKA
Sbjct: 61 SGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKSQCTPLFMNAYTMRGAGAVIHTHSKA 120
Query: 497 AVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKERMARA 676
AVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLK+RMA A
Sbjct: 121 AVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKDRMAHA 180
Query: 677 MNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDVAVSMKKVGLDPTQLPVGENG 856
MNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFD+AVSMKKVGLDP+QLPVGENG
Sbjct: 181 MNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAVSMKKVGLDPSQLPVGENG 240
Query: 857 IV 862
IV
Sbjct: 241 IV 242
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,364,473
Number of extensions: 1224940
Number of successful extensions: 3734
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3732
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 266
Effective length of database: 14,868,908
Effective search space: 3955129528
Effective search space used: 3955129528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009313
(1111 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 428 e-117
Sscrofa_Chr03 184 7e-44
>Sscrofa_Chr02
|| Length = 162569375
Score = 428 bits (216), Expect = e-117
Identities = 265/276 (96%), Gaps = 4/276 (1%)
Strand = Plus / Plus
Query: 766 gtgtgagtgttacgactatttgttcgatgttgccgtatcaatgaagaaagtaggactgga 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28482142 gtgtgagtgttacgactatttgttcgatgttgccgtatcaatgaagaaagtaggactgga 28482201
Query: 826 ccctacacagcttcctgttggagaaaatggaattgtctaagccaagtggaagtttatgat 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28482202 ccctacacagcttcctgttggagaaaatggaattgtctaagccaagtggaagtttatgat 28482261
Query: 886 atacagagacaaagcttaattattacttaaatgacatgactttttt-aacaaactgaaaa 944
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 28482262 atacagagacaaagcttaattattacttaaatgacatgacttttttaaacaaactgaaaa 28482321
Query: 945 tttccatgaagctattgatttgtccctaaatattggcccaaaccctggattttatttgct 1004
|||||||||||||||||||||||| ||||||||| || || || ||||||||||||||||
Sbjct: 28482322 tttccatgaagctattgatttgtcactaaatatt-gcacagacactggattttatttgct 28482380
Query: 1005 taaatttctggtatttttaaatgaccaatacaatgg 1040
|| | |||| ||| |||||||||| |||||||||||
Sbjct: 28482381 tata-ttcttgtaattttaaatga-caatacaatgg 28482414
Score = 377 bits (190), Expect = e-102
Identities = 193/194 (99%)
Strand = Plus / Plus
Query: 1 gtcttgtccgccccgcctccggactgccctccacaccgcctgattgcatttctggcctcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28461989 gtcttgtccgccccgcctccggactgccctccacaccgcctgattgcatttctggcctcg 28462048
Query: 61 ccgtgttagccccaactgagggccgggagcaaagccttgcgaagaccggagggcgcgggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28462049 ccgtgttagccccaactgagggccgggagcaaagccttgcgaagaccggagggcgcgggt 28462108
Query: 121 acctctgctcccggccatgtctggctgtcacgctccagagggagactgtggctcgcggca 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 28462109 acctctgctcccggccatgtctggctgtcacgctccagagggagactgtagctcgcggca 28462168
Query: 181 atgcctcgcgcagg 194
||||||||||||||
Sbjct: 28462169 atgcctcgcgcagg 28462182
Score = 335 bits (169), Expect = 3e-89
Identities = 172/173 (99%)
Strand = Plus / Plus
Query: 595 cagatatgatgacatgttagtagtccccattattgagaacacacctgaggagaaggacct 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28481370 cagatatgatgacatgttagtagtccccattattgagaacacacctgaggagaaggacct 28481429
Query: 655 caaggagagaatggccagggcaatgaatgaatacccagactcctgcgccgtgctcgtcag 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28481430 caaggagagaatggccagggcaatgaatgaatacccagactcctgcgccgtgctcgtcag 28481489
Query: 715 acggcacggagtctacgtctggggagagacgtgggagaaggccaaaaccatgt 767
||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28481490 acggcacggtgtctacgtctggggagagacgtgggagaaggccaaaaccatgt 28481542
Score = 266 bits (134), Expect = 2e-68
Identities = 137/138 (99%)
Strand = Plus / Plus
Query: 460 aggagcaggtgctgtgattcacacccactctaaagctgctgtcatggccacccttctctt 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28478546 aggagcaggtgctgtgattcacacccactctaaagctgctgtcatggccacccttctctt 28478605
Query: 520 cccaggaagggagtttaaaattacacatcaagagatgatcaaaggaataaagaaatgtac 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28478606 cccaggaagggagtttaaaattacacatcaagagatgatcaaaggaataaagaaatgtac 28478665
Query: 580 ctcgggagggtattacag 597
||| ||||||||||||||
Sbjct: 28478666 ctcaggagggtattacag 28478683
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 342 agcctgaagatatgtttgtgtgtgacatcgatgaacaggacataagtggacctccaccgc 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28476750 agcctgaagatatgtttgtgtgtgacatcgatgaacaggacataagtggacctccaccgc 28476809
Query: 402 ataagaacctgaagaaaagccagtgtacgcctcttttcatgaatgcttacacaatgagag 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28476810 ataagaacctgaagaaaagccagtgtacgcctcttttcatgaatgcttacacaatgagag 28476869
Query: 462 g 462
|
Sbjct: 28476870 g 28476870
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 192 aggacaaggaacatccacggtacctgatcccagagctttgcaaacagttttaccatttgg 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28470304 aggacaaggaacatccacggtacctgatcccagagctttgcaaacagttttaccatttgg 28470363
Query: 252 gctgggtcactggcactggaggaggaatcagcttgaagcatgg 294
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28470364 gctgggtcactggcactggaggaggaatcagcttgaagcatgg 28470406
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 294 gcaatgaaatctacattgctccttcaggagtacaaaaggaacggattcag 343
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28475040 gcaatgaaatctacattgctccttcaggagtacaaaaggaacggattcag 28475089
>Sscrofa_Chr03
|| Length = 144787322
Score = 184 bits (93), Expect = 7e-44
Identities = 285/347 (82%), Gaps = 14/347 (4%)
Strand = Plus / Plus
Query: 191 caggacaaggaacatccacggtacctgatcccagagctttgcaaacagttttaccatttg 250
|||||||||||||| ||| | | | |||||| ||||||||||||||||| |||||||||
Sbjct: 59529196 caggacaaggaacacccaagattctggatccctgagctttgcaaacagttgtaccatttg 59529255
Query: 251 ggctgggtcactggcactggaggaggaatcagcttgaagcatggcaatgaaatctacatt 310
||||| |||| |||| | ||||||| |||||||||| | ||| ||||||||||||
Sbjct: 59529256 ggctg-----ctgggactgaaagaggaattggcttgaagcaagacaaagaaatctacatt 59529310
Query: 311 gctccttcaggagtacaaaaggaacggattcagcctgaagatatgtttgtgtgtgacatc 370
|||||||||| ||| |||||| ||| |||||||||||||||||| | || |||||||
Sbjct: 59529311 gctccttcagaagttcaaaagaaacacattcagcctgaagatatgctggtttgtgacact 59529370
Query: 371 gatgaacaggacataagtggacctccaccgcataagaacct-gaagaaaagccagtgtac 429
|||||||||||||| |||||| || ||||||| || || ||||||||| ||||
Sbjct: 59529371 gatgaacaggacat-----gacctctgccatataagaatctaaaaaaaaagccagcgtac 59529425
Query: 430 gcctcttttcatgaatgcttacacaatgagaggagcaggtgctgtgattcacacccactc 489
|| |||||||||||||| ||||||| ||||| |||||| ||| ||| | ||||||
Sbjct: 59529426 tccccttttcatgaatgcatacacaaccagagg---aggtgccatgactcataaccactc 59529482
Query: 490 taaagctgctgtcatggccacccttctcttcccaggaagggagttta 536
|||| |||| |||||| |||||||||||||||||||||||||||||
Sbjct: 59529483 aaaaggtgctttcatggacacccttctcttcccaggaagggagttta 59529529
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,379,073
Number of extensions: 230
Number of successful extensions: 230
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 9
Length of query: 1111
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1090
Effective length of database: 2,808,413,156
Effective search space: 3061170340040
Effective search space used: 3061170340040
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)