Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009342
(993 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002699012.1| PREDICTED: hypothetical protein isoform 2 [B... 115 6e-26
Alignment gi|XP_001251639.1| PREDICTED: hypothetical protein isoform 1 [B... 115 6e-26
Alignment gi|XP_002699011.1| PREDICTED: hypothetical protein isoform 1 [B... 97 2e-20
Alignment gi|XP_001789655.1| PREDICTED: hypothetical protein isoform 2 [B... 97 2e-20
>ref|XP_002699012.1| PREDICTED: hypothetical protein isoform 2 [Bos taurus].
Length = 119
Score = 115 bits (288), Expect = 6e-26
Identities = 58/76 (76%), Positives = 63/76 (82%)
Frame = +1
Query: 121 DVGGAQVLATGKSAGEETDIKYALIGTALGFIISAGFLALKICMIRKHLFDNDSSDLRSM 300
DVG AQVLATGK A E DIKYA+IGTA+G ISAGFLALK CMIRKH+FDNDSSDLRS
Sbjct: 15 DVGAAQVLATGKPARAEADIKYAVIGTAVGIAISAGFLALKFCMIRKHMFDNDSSDLRST 74
Query: 301 NAGSSETMALKKRAPR 348
N G +ET+ALKKR R
Sbjct: 75 NVGFNETIALKKRTSR 90
>ref|XP_001251639.1| PREDICTED: hypothetical protein isoform 1 [Bos taurus].
Length = 119
Score = 115 bits (288), Expect = 6e-26
Identities = 58/76 (76%), Positives = 63/76 (82%)
Frame = +1
Query: 121 DVGGAQVLATGKSAGEETDIKYALIGTALGFIISAGFLALKICMIRKHLFDNDSSDLRSM 300
DVG AQVLATGK A E DIKYA+IGTA+G ISAGFLALK CMIRKH+FDNDSSDLRS
Sbjct: 15 DVGAAQVLATGKPARAEADIKYAVIGTAVGIAISAGFLALKFCMIRKHMFDNDSSDLRST 74
Query: 301 NAGSSETMALKKRAPR 348
N G +ET+ALKKR R
Sbjct: 75 NVGFNETIALKKRTSR 90
>ref|XP_002699011.1| PREDICTED: hypothetical protein isoform 1 [Bos taurus].
Length = 79
Score = 97.1 bits (240), Expect = 2e-20
Identities = 51/73 (69%), Positives = 57/73 (78%)
Frame = +1
Query: 175 DIKYALIGTALGFIISAGFLALKICMIRKHLFDNDSSDLRSMNAGSSETMALKKRAPRLN 354
DIKYA+IGTA+G ISAGFLALK CMIRKH+FDNDSSDLRS N G +ET+ALKKR
Sbjct: 15 DIKYAVIGTAVGIAISAGFLALKFCMIRKHMFDNDSSDLRSTNVGFNETIALKKR----- 69
Query: 355 LSLSERNAQVIEL 393
+ RNA VIEL
Sbjct: 70 ---TSRNAHVIEL 79
>ref|XP_001789655.1| PREDICTED: hypothetical protein isoform 2 [Bos taurus].
Length = 79
Score = 97.1 bits (240), Expect = 2e-20
Identities = 51/73 (69%), Positives = 57/73 (78%)
Frame = +1
Query: 175 DIKYALIGTALGFIISAGFLALKICMIRKHLFDNDSSDLRSMNAGSSETMALKKRAPRLN 354
DIKYA+IGTA+G ISAGFLALK CMIRKH+FDNDSSDLRS N G +ET+ALKKR
Sbjct: 15 DIKYAVIGTAVGIAISAGFLALKFCMIRKHMFDNDSSDLRSTNVGFNETIALKKR----- 69
Query: 355 LSLSERNAQVIEL 393
+ RNA VIEL
Sbjct: 70 ---TSRNAHVIEL 79
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,052,677
Number of extensions: 906025
Number of successful extensions: 2341
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2340
Number of HSP's successfully gapped: 4
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009342
(993 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,486,517
Number of extensions: 932947
Number of successful extensions: 2146
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2146
Number of HSP's successfully gapped: 0
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009342
(993 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177096.1| chromosome 10 open reading frame 128 [Sus sc... 195 3e-50
>ref|NP_001177096.1| chromosome 10 open reading frame 128 [Sus scrofa].
Length = 106
Score = 195 bits (496), Expect = 3e-50
Identities = 101/106 (95%), Positives = 101/106 (95%)
Frame = +1
Query: 76 MGWGPSTLRAXXXXXDVGGAQVLATGKSAGEETDIKYALIGTALGFIISAGFLALKICMI 255
MGWGPSTLRA DVGGAQVLATGKSAGEETDIKYALIGTALGFIISAGFLALKICMI
Sbjct: 1 MGWGPSTLRALLLLLDVGGAQVLATGKSAGEETDIKYALIGTALGFIISAGFLALKICMI 60
Query: 256 RKHLFDNDSSDLRSMNAGSSETMALKKRAPRLNLSLSERNAQVIEL 393
RKHLFDNDSSDLRSMNAGSSETMALKKRAPRLNLSLSERNAQVIEL
Sbjct: 61 RKHLFDNDSSDLRSMNAGSSETMALKKRAPRLNLSLSERNAQVIEL 106
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,175,053
Number of extensions: 581356
Number of successful extensions: 1430
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1430
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009342
(993 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157088.1| hypothetical protein LOC69069 [Mus musculus]. 97 1e-20
>ref|NP_001157088.1| hypothetical protein LOC69069 [Mus musculus].
Length = 95
Score = 97.4 bits (241), Expect = 1e-20
Identities = 52/91 (57%), Positives = 63/91 (69%)
Frame = +1
Query: 76 MGWGPSTLRAXXXXXDVGGAQVLATGKSAGEETDIKYALIGTALGFIISAGFLALKICMI 255
M G LR +GGAQVLATGK A E D KYA+IG A+G ISAGFLALKICMI
Sbjct: 1 MSSGVPLLRVLLFLLGIGGAQVLATGKPAETEIDFKYAIIGMAVGVAISAGFLALKICMI 60
Query: 256 RKHLFDNDSSDLRSMNAGSSETMALKKRAPR 348
R+HL DNDS+DL++ +T+ LKK++PR
Sbjct: 61 RRHLSDNDSADLKNT---PQDTILLKKKSPR 88
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,501,057
Number of extensions: 782269
Number of successful extensions: 2033
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2031
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009342
(993 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001010863.1| putative uncharacterized protein C10orf128 p... 132 6e-31
>ref|NP_001010863.1| putative uncharacterized protein C10orf128 precursor [Homo
sapiens].
Length = 105
Score = 132 bits (331), Expect = 6e-31
Identities = 72/106 (67%), Positives = 82/106 (77%)
Frame = +1
Query: 76 MGWGPSTLRAXXXXXDVGGAQVLATGKSAGEETDIKYALIGTALGFIISAGFLALKICMI 255
M G S LR DVGGAQVLATGK+ G E D KYALIGTA+G ISAGFLALKICMI
Sbjct: 1 MNLGVSMLRILFLL-DVGGAQVLATGKTPGAEIDFKYALIGTAVGVAISAGFLALKICMI 59
Query: 256 RKHLFDNDSSDLRSMNAGSSETMALKKRAPRLNLSLSERNAQVIEL 393
R+HLFD+DSSDL+S G S+T+ LKKRAPR N + S+R+AQVIEL
Sbjct: 60 RRHLFDDDSSDLKSTPGGLSDTIPLKKRAPRRNHNFSKRDAQVIEL 105
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,943,652
Number of extensions: 923830
Number of successful extensions: 2203
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2203
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009342
(993 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1205 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 1205 bits (608), Expect = 0.0
Identities = 620/624 (99%)
Strand = Plus / Minus
Query: 370 agaaatgcacaagtgattgagctctgagcaaacagcctcttcagaagggtttcagcactc 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97565879 agaaatgcacaagtgattgagctctgagcaaacagcctcttcagaagggtttcagcactc 97565820
Query: 430 tggactcctgcctacagttgcagtcttagagacagcttgaatttgagcaccaaggctggt 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97565819 tggactcctgcctacagttgcagtcttagagacagcttgaatttgagcaccaaggctggt 97565760
Query: 490 gatggaccttcacaaagaactcaaaatccagagcaaataatagagcatacagatgctgca 549
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 97565759 gatggaccttcacaaagagctcaaaatccagagcaaataatagagcatacagatgctgca 97565700
Query: 550 atacctctatgctaaaggaaaatgttgcttctcttctacaagaagctgattgcatagaca 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97565699 atacctctatgctaaaggaaaatgttgcttctcttctacaagaagctgattgcatagaca 97565640
Query: 610 gatgtaagagcaatctttccagcagtaagaaagaattgaagccagcaaatcttcactgcc 669
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97565639 gatgtaagagaaatctttccagcagtaagaaagaattgaagccagcaaatcttcactgcc 97565580
Query: 670 tatcctgttccccatgttggagctggtcatgctgcatgatgtctttgtgtccatatcagt 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97565579 tatcctgttccccatgttggagctggtcatgctgcatgatgtctttgtgtccatatcagt 97565520
Query: 730 ggaacctacctgcagcaaatggctcatggaatgagaaccaaactcaagacacaacttctt 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97565519 ggaacctacctgcagcaaatggctcatggaatgagaaccaaactcaagacacaacttctt 97565460
Query: 790 tagcaccaccgtcttaccaagagatgagccacattttctaggactgttagcctcaccttc 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97565459 tagcaccaccgtcttaccaagagatgagccacattttctaggactgttagcctcaccttc 97565400
Query: 850 ttagctgccagaagaatccctctgtcaacattcaagggccctgaaacatggaaactaaag 909
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 97565399 ttagctgccagaagaatccctctgtcaacattcaagggccctgaaacatggaaactaagg 97565340
Query: 910 ggtagtctccattcccataaatgaaagacagaccttccaaaggaagaaatggcaagctga 969
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 97565339 ggtagtctccattcccataaatgaaagacagaccttccaaaggaagaaatggcaggctga 97565280
Query: 970 actggagtgggagtaaagggtctg 993
||||||||||||||||||||||||
Sbjct: 97565279 actggagtgggagtaaagggtctg 97565256
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 175 gatatcaaatatgccctcatcgggactgctctgggcttcatcatatcagctggctttctg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97576239 gatatcaaatatgccctcatcgggactgctctgggcttcatcatatcagctggctttctg 97576180
Query: 235 gccctgaaaatctgcatgatcaggaagcacttgtttgataatgactcctcagacctgaga 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97576179 gccctgaaaatctgcatgatcaggaagcacttgtttgataatgactcctcagacctgaga 97576120
Query: 295 agcatgaacgcgggctccagtg 316
||||||||||||||||||||||
Sbjct: 97576119 agcatgaacgcgggctccagtg 97576098
Score = 230 bits (116), Expect = 1e-57
Identities = 119/120 (99%)
Strand = Plus / Minus
Query: 2 tcctgtcccctggagtctttggtcacacagcctgtcctgtccgccctttgaggagccaga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97598354 tcctgtcccctggagtctttggtcacacagcctgtcctgtccgccctttgaggagccaga 97598295
Query: 62 agcagagagccagcatgggctgggggcccagcacgctgagagctctccttcttctcctgg 121
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 97598294 agcagagagccagcatgggctgggggcccagcacgctgagagctctcctccttctcctgg 97598235
Score = 109 bits (55), Expect = 3e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 121 gatgttggtggagctcaagtgctggcaacgggcaagtctgctggggaggaaactg 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97577675 gatgttggtggagctcaagtgctggcaacgggcaagtctgctggggaggaaactg 97577621
Score = 67.9 bits (34), Expect = 1e-08
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 316 gagaccatggcgctaaagaagagagccccaaggt 349
||||||||||||||||||||||||||||||||||
Sbjct: 97574750 gagaccatggcgctaaagaagagagccccaaggt 97574717
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,606,456
Number of extensions: 242
Number of successful extensions: 242
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 5
Length of query: 993
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 972
Effective length of database: 2,808,413,156
Effective search space: 2729777587632
Effective search space used: 2729777587632
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)