Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009348
(1181 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001180086.1| zinc finger protein 408 [Bos taurus]. 583 e-166
Alignment gi|XP_002693581.1| PREDICTED: zinc finger protein 408 [Bos taur... 583 e-166
Alignment gi|XP_002693612.1| PREDICTED: hypothetical protein [Bos taurus]. 67 4e-11
Alignment gi|XP_002701451.1| PREDICTED: hypothetical protein [Bos taurus]. 67 4e-11
Alignment gi|NP_001030418.1| zinc finger protein 746 [Bos taurus]. 53 6e-07
Alignment gi|NP_001179347.1| zinc finger protein 697 [Bos taurus]. 52 1e-06
Alignment gi|XP_002695522.1| PREDICTED: Zinc finger protein 28 homolog (m... 52 1e-06
Alignment gi|XP_002686141.1| PREDICTED: zinc finger protein 697 [Bos taur... 52 1e-06
Alignment gi|NP_001091550.1| transcriptional repressor protein YY1 [Bos t... 51 2e-06
Alignment gi|XP_002692624.1| PREDICTED: Zinc finger protein 208-like [Bos... 51 2e-06
>ref|NP_001180086.1| zinc finger protein 408 [Bos taurus].
Length = 719
Score = 583 bits (1503), Expect = e-166
Identities = 293/389 (75%), Positives = 311/389 (79%), Gaps = 1/389 (0%)
Frame = +2
Query: 17 MEEAEELLSAKGRLQFVPGPRLDPDSGWSPSGEGCAQGPKDFPARPTRAILALKSLPRGL 196
ME EELL +GRLQ P PRL P+SGWSP EGCA G KD P PTRAILALKSLPRGL
Sbjct: 1 MEATEELLLGRGRLQLAPDPRLGPESGWSPPSEGCAPGLKDVPPGPTRAILALKSLPRGL 60
Query: 197 ALGPSLTEEQRLGVWCVGEPLQPGLLWGPLEEESVSKQKGDAAEREQKEDVSLDPWGDVC 376
ALGPSLT EQRLGVWCVGEPLQPGLLWGPLEE SVS+QKG+ E ++KEDVSL WGDVC
Sbjct: 61 ALGPSLTAEQRLGVWCVGEPLQPGLLWGPLEEGSVSEQKGNGVEPKRKEDVSLGSWGDVC 120
Query: 377 ACEQSSGWMSLVQRGKLEGEGNVAPVWISERLHLQVYRVVLPGFELRLWPRPPAEGLSPN 556
ACEQS+GW S VQ G+LEGEGNVAPV I ERLHL+V R VLPGFELRLWP+ P+EG SP
Sbjct: 121 ACEQSAGWTSFVQLGRLEGEGNVAPVRIGERLHLRVSRRVLPGFELRLWPQLPSEGPSPP 180
Query: 557 QSRLEEEASMAGVTEMESVVQQEVATE-EDATEPCTDPGVQSPPNIQAESVVSSGLQPQT 733
Q RLEE +S A VTE+ES V+QEVA EDA EPC DPG QSPP+IQAESVVS GL PQT
Sbjct: 181 QPRLEEASSAAVVTEVESAVRQEVACPGEDAAEPCPDPGHQSPPSIQAESVVSPGLTPQT 240
Query: 734 QDHVSKESQSLGPLPEDGSVDEEVPPQTQMSPGPQSTSAPQQGPXXXXXXXXXXXRGPQL 913
Q V KE+Q LGPLP D SVDEE PPQTQ P PQS+SAPQQGP R PQL
Sbjct: 241 QPPVPKENQPLGPLPADDSVDEEDPPQTQTPPEPQSSSAPQQGPARGEASSSSSDRAPQL 300
Query: 914 RAHLGKRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGRRYCC 1093
AHL K+LRSPS Q PPR KTSEPGAQ TGE Q PGFPA LRSPPG AGGSPKQGRRY C
Sbjct: 301 CAHLVKKLRSPSGQHPPRAKTSEPGAQATGEPQRPGFPARLRSPPGPAGGSPKQGRRYRC 360
Query: 1094 GECGKAFLQLCHLKKHAFVHTGHKPFLCT 1180
GECGKAFLQLCHLKKHAFVHTGHKPFLCT
Sbjct: 361 GECGKAFLQLCHLKKHAFVHTGHKPFLCT 389
>ref|XP_002693581.1| PREDICTED: zinc finger protein 408 [Bos taurus].
Length = 719
Score = 583 bits (1503), Expect = e-166
Identities = 293/389 (75%), Positives = 311/389 (79%), Gaps = 1/389 (0%)
Frame = +2
Query: 17 MEEAEELLSAKGRLQFVPGPRLDPDSGWSPSGEGCAQGPKDFPARPTRAILALKSLPRGL 196
ME EELL +GRLQ P PRL P+SGWSP EGCA G KD P PTRAILALKSLPRGL
Sbjct: 1 MEATEELLLGRGRLQLAPDPRLGPESGWSPPSEGCAPGLKDVPPGPTRAILALKSLPRGL 60
Query: 197 ALGPSLTEEQRLGVWCVGEPLQPGLLWGPLEEESVSKQKGDAAEREQKEDVSLDPWGDVC 376
ALGPSLT EQRLGVWCVGEPLQPGLLWGPLEE SVS+QKG+ E ++KEDVSL WGDVC
Sbjct: 61 ALGPSLTAEQRLGVWCVGEPLQPGLLWGPLEEGSVSEQKGNGVEPKRKEDVSLGSWGDVC 120
Query: 377 ACEQSSGWMSLVQRGKLEGEGNVAPVWISERLHLQVYRVVLPGFELRLWPRPPAEGLSPN 556
ACEQS+GW S VQ G+LEGEGNVAPV I ERLHL+V R VLPGFELRLWP+ P+EG SP
Sbjct: 121 ACEQSAGWTSFVQLGRLEGEGNVAPVRIGERLHLRVSRRVLPGFELRLWPQLPSEGPSPP 180
Query: 557 QSRLEEEASMAGVTEMESVVQQEVATE-EDATEPCTDPGVQSPPNIQAESVVSSGLQPQT 733
Q RLEE +S A VTE+ES V+QEVA EDA EPC DPG QSPP+IQAESVVS GL PQT
Sbjct: 181 QPRLEEASSAAVVTEVESAVRQEVACPGEDAAEPCPDPGHQSPPSIQAESVVSPGLTPQT 240
Query: 734 QDHVSKESQSLGPLPEDGSVDEEVPPQTQMSPGPQSTSAPQQGPXXXXXXXXXXXRGPQL 913
Q V KE+Q LGPLP D SVDEE PPQTQ P PQS+SAPQQGP R PQL
Sbjct: 241 QPPVPKENQPLGPLPADDSVDEEDPPQTQTPPEPQSSSAPQQGPARGEASSSSSDRAPQL 300
Query: 914 RAHLGKRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGRRYCC 1093
AHL K+LRSPS Q PPR KTSEPGAQ TGE Q PGFPA LRSPPG AGGSPKQGRRY C
Sbjct: 301 CAHLVKKLRSPSGQHPPRAKTSEPGAQATGEPQRPGFPARLRSPPGPAGGSPKQGRRYRC 360
Query: 1094 GECGKAFLQLCHLKKHAFVHTGHKPFLCT 1180
GECGKAFLQLCHLKKHAFVHTGHKPFLCT
Sbjct: 361 GECGKAFLQLCHLKKHAFVHTGHKPFLCT 389
>ref|XP_002693612.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 379
Score = 66.6 bits (161), Expect = 4e-11
Identities = 33/53 (62%), Positives = 38/53 (71%)
Frame = -2
Query: 562 GLVGAQALSGRPGPQPQLETWQHNPVHL*VEPLADPHGSHVSLTLQLAPLHQT 404
GL GA+AL G+ GPQPQL+ QH P H V+PLADPH HV L LQ A LH+T
Sbjct: 321 GLGGARALGGKLGPQPQLKARQHAPGHPQVQPLADPHRGHVPLALQPAQLHKT 373
Score = 54.3 bits (129), Expect = 2e-07
Identities = 33/51 (64%), Positives = 36/51 (70%), Gaps = 5/51 (9%)
Frame = -2
Query: 1177 AKEGLVACVHECMLLQVAQLQEGLATLPTAVSSPL-----FWGASCTARRA 1040
AKEGLVA VHE +LLQVA+LQEGLA LPTAVS+ L G T RRA
Sbjct: 205 AKEGLVARVHERVLLQVAELQEGLAALPTAVSTQLGGPVRRGGTGLTPRRA 255
>ref|XP_002701451.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 379
Score = 66.6 bits (161), Expect = 4e-11
Identities = 33/53 (62%), Positives = 38/53 (71%)
Frame = -2
Query: 562 GLVGAQALSGRPGPQPQLETWQHNPVHL*VEPLADPHGSHVSLTLQLAPLHQT 404
GL GA+AL G+ GPQPQL+ QH P H V+PLADPH HV L LQ A LH+T
Sbjct: 321 GLGGARALGGKLGPQPQLKARQHAPGHPQVQPLADPHRGHVPLALQPAQLHKT 373
Score = 54.3 bits (129), Expect = 2e-07
Identities = 33/51 (64%), Positives = 36/51 (70%), Gaps = 5/51 (9%)
Frame = -2
Query: 1177 AKEGLVACVHECMLLQVAQLQEGLATLPTAVSSPL-----FWGASCTARRA 1040
AKEGLVA VHE +LLQVA+LQEGLA LPTAVS+ L G T RRA
Sbjct: 205 AKEGLVARVHERVLLQVAELQEGLAALPTAVSTQLGGPVRRGGTGLTPRRA 255
>ref|NP_001030418.1| zinc finger protein 746 [Bos taurus].
Length = 630
Score = 52.8 bits (125), Expect = 6e-07
Identities = 87/368 (23%), Positives = 129/368 (35%), Gaps = 76/368 (20%)
Frame = +2
Query: 305 KQKGDAAEREQKE-----------DVSLDPWGDVCACEQSSGWMSLVQRGKLEGEGNVAP 451
KQ+G+ +EQ+ D+ +PWG +S + G + + A
Sbjct: 189 KQEGELQLQEQQALGVEAWAAGQPDIGEEPWG-----------LSQLDSGAGDVSTDAA- 236
Query: 452 VWISERLHLQVYRVVLP-GFELRLWPRPPAEGLSPNQSRLEEEASMAGVTEMESVVQQEV 628
+H + P ++ L P P+ S +L AS +++ V++ EV
Sbjct: 237 ----SGVHANFSTTIPPTSWQADLPPHHPSSACSDGTLKLSTAASTEA--DVKIVIKTEV 290
Query: 629 ATEEDATEPC--TD---------PGVQS---PPNIQAESVVSSGLQPQTQDHVSKESQSL 766
EE P TD PG + P +Q + S G +QD V +
Sbjct: 291 QEEEVVATPVHPTDLEAHGTLFGPGQATRFFPSPVQEGAWESQGSSFPSQDPVLGLREPA 350
Query: 767 GPLPEDGSVDEEVPPQTQMSPG----------------PQSTSAPQQGPXXXXXXXXXXX 898
P + G VP Q + SPG P + P+ GP
Sbjct: 351 RPERDLGDPTPTVP-QDETSPGDWLFGGVRWGWNFRCKPPAGLNPRTGPEGL-------- 401
Query: 899 RGPQLRAHLGKRLRSPSDQ-RPPRVKTSEPG-----AQQTGEQQHPGFP----------- 1027
P + G+ + P RP PG + G ++HP P
Sbjct: 402 --PFSSSDNGEAVLDPGQAPRPFNDPCKYPGRTKGFGHKPGLKKHPAAPPGGRPFTCATC 459
Query: 1028 -----------AHLRS----PPGCAG--GSPKQGRRYCCGECGKAFLQLCHLKKHAFVHT 1156
AH RS P G G GS + G CGECG+ F + HL +H +HT
Sbjct: 460 GKSFQLQVSLSAHQRSCGGQPDGVPGAAGSARDGSGLRCGECGRCFTRPAHLIRHRMLHT 519
Query: 1157 GHKPFLCT 1180
G +PF CT
Sbjct: 520 GERPFPCT 527
>ref|NP_001179347.1| zinc finger protein 697 [Bos taurus].
Length = 550
Score = 52.0 bits (123), Expect = 1e-06
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +2
Query: 1028 AHLRSPPGCAGGSPKQGRRYCCGECGKAFLQLCHLKKHAFVHTGHKPFLCT 1180
+H R+ +G P R + CGECGK F++ HL H +HTG KP C+
Sbjct: 339 SHRRAHAAASGAGPAALRPFACGECGKGFVRRSHLANHQRIHTGEKPHGCS 389
>ref|XP_002695522.1| PREDICTED: Zinc finger protein 28 homolog (mouse)-like [Bos taurus].
Length = 957
Score = 52.0 bits (123), Expect = 1e-06
Identities = 21/34 (61%), Positives = 23/34 (67%)
Frame = +2
Query: 1079 RRYCCGECGKAFLQLCHLKKHAFVHTGHKPFLCT 1180
R Y CG+C KAF Q HL +H VHTG KPF CT
Sbjct: 340 RPYTCGQCAKAFTQAAHLAQHRGVHTGEKPFACT 373
>ref|XP_002686141.1| PREDICTED: zinc finger protein 697 [Bos taurus].
Length = 550
Score = 52.0 bits (123), Expect = 1e-06
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +2
Query: 1028 AHLRSPPGCAGGSPKQGRRYCCGECGKAFLQLCHLKKHAFVHTGHKPFLCT 1180
+H R+ +G P R + CGECGK F++ HL H +HTG KP C+
Sbjct: 339 SHRRAHAAASGAGPAALRPFACGECGKGFVRRSHLANHQRIHTGEKPHGCS 389
>ref|NP_001091550.1| transcriptional repressor protein YY1 [Bos taurus].
Length = 415
Score = 51.2 bits (121), Expect = 2e-06
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 929 KRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGRR-YCCGECG 1105
K+L + +P ++K E A +T H G R G R + C ECG
Sbjct: 275 KQLAEFARMKPRKIK--EDDAPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECG 332
Query: 1106 KAFLQLCHLKKHAFVHTGHKPFLCT 1180
KAF++ LK+H VHTG KPF CT
Sbjct: 333 KAFVESSKLKRHQLVHTGEKPFQCT 357
>ref|XP_002692624.1| PREDICTED: Zinc finger protein 208-like [Bos taurus].
Length = 1010
Score = 50.8 bits (120), Expect = 2e-06
Identities = 20/32 (62%), Positives = 25/32 (78%)
Frame = +2
Query: 1085 YCCGECGKAFLQLCHLKKHAFVHTGHKPFLCT 1180
Y CGECGKAF+Q HL +H VHTG KP++C+
Sbjct: 873 YECGECGKAFVQHSHLTQHQRVHTGEKPYVCS 904
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,249,713
Number of extensions: 1833027
Number of successful extensions: 17405
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 17054
Number of HSP's successfully gapped: 35
Length of query: 393
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 289
Effective length of database: 14,240,222
Effective search space: 4115424158
Effective search space used: 4115424158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009348
(1181 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540750.2| PREDICTED: similar to zinc finger protein 408 [... 577 e-165
Alignment gi|XP_547165.2| PREDICTED: similar to zinc finger protein 206 [... 54 4e-07
Alignment gi|XP_546966.2| PREDICTED: similar to Zinc finger protein 38 ho... 54 4e-07
Alignment gi|XP_868538.1| PREDICTED: similar to YY1 transcription factor ... 51 2e-06
Alignment gi|XP_854514.1| PREDICTED: similar to YY1 transcription factor ... 51 2e-06
Alignment gi|XP_539574.2| PREDICTED: similar to zinc finger protein 643 [... 51 2e-06
Alignment gi|XP_542859.2| PREDICTED: similar to zinc finger protein 336 [... 50 4e-06
Alignment gi|XP_548891.2| PREDICTED: similar to Membrane-bound transcript... 50 5e-06
Alignment gi|XP_543536.1| PREDICTED: similar to Zinc finger protein 70 (Z... 50 5e-06
Alignment gi|XP_547020.2| PREDICTED: similar to zinc finger protein 553 [... 49 7e-06
>ref|XP_540750.2| PREDICTED: similar to zinc finger protein 408 [Canis familiaris].
Length = 752
Score = 577 bits (1487), Expect = e-165
Identities = 287/394 (72%), Positives = 319/394 (80%), Gaps = 1/394 (0%)
Frame = +2
Query: 2 AFRSGMEEAEELLSAKGRLQFVPGPRLDPDSGWSPSGEGCAQGPKDFPARPTRAILALKS 181
AF GMEEAEELLS RL+ P PRL D GW PSG+GCAQG KDFP PTRA+LAL+S
Sbjct: 19 AFLEGMEEAEELLSKGERLRLAPDPRLGLDLGWIPSGQGCAQGLKDFPPEPTRAVLALQS 78
Query: 182 LPRGLALGPSLTEEQRLGVWCVGEPLQPGLLWGPLEEESVSKQKGDAAEREQKEDVSLDP 361
LPRGLALGPS EEQRLGVWCVGEPLQPGLLWGPLEEESV +QK + + +KEDVSL P
Sbjct: 79 LPRGLALGPSFAEEQRLGVWCVGEPLQPGLLWGPLEEESVPEQKDEGVKPRRKEDVSLGP 138
Query: 362 WGDVCACEQSSGWMSLVQRGKLEGEGNVAPVWISERLHLQVYRVVLPGFELRLWPRPPAE 541
WGDVCACEQSSGW+SLVQR +LE EGNVAPV ISE+LHLQVYR++LPGFEL LWP+PP++
Sbjct: 139 WGDVCACEQSSGWISLVQRSRLESEGNVAPVRISEKLHLQVYRIILPGFELLLWPQPPSD 198
Query: 542 GLSPNQSRLEEEASMAGVTEMESVVQQEV-ATEEDATEPCTDPGVQSPPNIQAESVVSSG 718
GLS Q RLEEEA+MA +TE++SVVQQEV + EDATEP TDPG QSPP+IQAES+V G
Sbjct: 199 GLSHTQPRLEEEAAMAVLTEVDSVVQQEVDSPGEDATEPWTDPGHQSPPSIQAESMVGPG 258
Query: 719 LQPQTQDHVSKESQSLGPLPEDGSVDEEVPPQTQMSPGPQSTSAPQQGPXXXXXXXXXXX 898
L+PQTQD +SKE+Q LGPLP+DGS+DEE P QTQM P QS+SA QQG
Sbjct: 259 LKPQTQDQLSKETQLLGPLPQDGSMDEEDPAQTQMPPESQSSSATQQGTESSEASSSFSA 318
Query: 899 RGPQLRAHLGKRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQG 1078
R QLRA++ K+LR PS Q PPR TSEP AQQ GEQQ PGFPA LRSPPG AG SPKQ
Sbjct: 319 RDNQLRAYVVKKLRGPSGQCPPREMTSEPRAQQAGEQQQPGFPACLRSPPGPAGSSPKQR 378
Query: 1079 RRYCCGECGKAFLQLCHLKKHAFVHTGHKPFLCT 1180
RRY CGECGKAFLQLCHLKKHAFVHTGHKPFLCT
Sbjct: 379 RRYRCGECGKAFLQLCHLKKHAFVHTGHKPFLCT 412
>ref|XP_547165.2| PREDICTED: similar to zinc finger protein 206 [Canis familiaris].
Length = 782
Score = 53.5 bits (127), Expect = 4e-07
Identities = 40/114 (35%), Positives = 53/114 (46%), Gaps = 21/114 (18%)
Frame = +2
Query: 899 RGPQLRAHLGKRLRSPS-DQRPPRVKTSEPGAQQTGE----------QQHPGFPAHLRSP 1045
+G Q RAHL + L + + D+ PRV +P A++ Q+ HLR
Sbjct: 437 QGFQRRAHLMQHLLAHAQDRESPRVPEPKPEAREPAIVLCSHCGQTFQRRSSLKRHLRIH 496
Query: 1046 PGCAG-------GSPKQG---RRYCCGECGKAFLQLCHLKKHAFVHTGHKPFLC 1177
G GS + G R Y CG+CGKAF + HL H VHTG +PF C
Sbjct: 497 AKDKGHQCSECSGSLRPGPERRPYVCGDCGKAFRRSEHLGAHRRVHTGERPFAC 550
>ref|XP_546966.2| PREDICTED: similar to Zinc finger protein 38 homolog (Zfp-38)
(NY-REN-21 antigen) (Zinc finger and SCAN domain
containing protein 21) [Canis familiaris].
Length = 598
Score = 53.5 bits (127), Expect = 4e-07
Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 9/250 (3%)
Frame = +2
Query: 458 ISERLHLQVYRVVLPGFELRLW-----PRPPAEGLSPNQSRLEEEASMAGVTEMESVVQQ 622
I E L L+ + +LP EL+ W P E ++ + LE+E G +Q
Sbjct: 209 ILELLVLEQFLTILPQ-ELQAWVQEHCPESAEEAVTLLED-LEQELDEPGQQVSSPPSEQ 266
Query: 623 EVATEEDATEPCTDPGVQSPPNIQAESVVSS----GLQPQTQDHVSKESQSLGPLPEDGS 790
+ E+ ++ V+ P + Q +SVV+S G +P +E L + S
Sbjct: 267 QQMWEKKSSSGT----VKFPSSTQPQSVVTSHKCEGWEPLYIQETGEEQNFTPELRK--S 320
Query: 791 VDEEVPPQTQMSPGPQSTSAPQQGPXXXXXXXXXXXRGPQLRAHLGKRLRSPSDQRPPRV 970
D + Q + S Q +S Q + A L ++ + +R +
Sbjct: 321 QDRKSNTQNEESTDKQKSSEECQ---EFKRDVIPMIIASKCEARLERQWVNLEKERGTKT 377
Query: 971 KTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGRRYCCGECGKAFLQLCHLKKHAFV 1150
+ G+++ G + P PA PG RRY C ECGKAF +L KH
Sbjct: 378 PLLDKGSKK-GRELIPAKPA-----PG--------ERRYICAECGKAFSNSSNLTKHRRT 423
Query: 1151 HTGHKPFLCT 1180
HTG KP++CT
Sbjct: 424 HTGEKPYVCT 433
>ref|XP_868538.1| PREDICTED: similar to YY1 transcription factor isoform 4 [Canis
familiaris].
Length = 411
Score = 51.2 bits (121), Expect = 2e-06
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 929 KRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGRR-YCCGECG 1105
K+L + +P ++K E A +T H G R G R + C ECG
Sbjct: 271 KQLAEFARMKPRKIK--EDDAPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECG 328
Query: 1106 KAFLQLCHLKKHAFVHTGHKPFLCT 1180
KAF++ LK+H VHTG KPF CT
Sbjct: 329 KAFVESSKLKRHQLVHTGEKPFQCT 353
>ref|XP_854514.1| PREDICTED: similar to YY1 transcription factor isoform 1 [Canis
familiaris].
Length = 410
Score = 51.2 bits (121), Expect = 2e-06
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 929 KRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGRR-YCCGECG 1105
K+L + +P ++K E A +T H G R G R + C ECG
Sbjct: 270 KQLAEFARMKPRKIK--EDDAPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECG 327
Query: 1106 KAFLQLCHLKKHAFVHTGHKPFLCT 1180
KAF++ LK+H VHTG KPF CT
Sbjct: 328 KAFVESSKLKRHQLVHTGEKPFQCT 352
>ref|XP_539574.2| PREDICTED: similar to zinc finger protein 643 [Canis familiaris].
Length = 757
Score = 50.8 bits (120), Expect = 2e-06
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Frame = +2
Query: 926 GKRLRSPSD-QRPPRVKTSEP----GAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGRRYC 1090
GK R PS + R+ T E G + Q G HLR+ + + +
Sbjct: 340 GKTFRHPSSLTQHVRIHTGEKPYECGVCEKAFSQSIGLIQHLRTHV--------REKPFT 391
Query: 1091 CGECGKAFLQLCHLKKHAFVHTGHKPFLC 1177
C +CGKAF Q+ HL++H +HTG KP++C
Sbjct: 392 CKDCGKAFFQIRHLRQHEIIHTGVKPYIC 420
>ref|XP_542859.2| PREDICTED: similar to zinc finger protein 336 [Canis familiaris].
Length = 744
Score = 50.1 bits (118), Expect = 4e-06
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +2
Query: 1079 RRYCCGECGKAFLQLCHLKKHAFVHTGHKPFLC 1177
R YCC +CGK F QL L++H +HTG KPF+C
Sbjct: 578 RPYCCDQCGKQFTQLNALQRHHRIHTGEKPFMC 610
>ref|XP_548891.2| PREDICTED: similar to Membrane-bound transcription factor site 2
protease (S2P endopeptidase) (Site-2 protease)
(Sterol-regulatory element-binding proteins intramembrane
protease) [Canis familiaris].
Length = 812
Score = 49.7 bits (117), Expect = 5e-06
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +2
Query: 1079 RRYCCGECGKAFLQLCHLKKHAFVHTGHKPFLCT 1180
R + C ECGKAF++ LK+H VHTG KPF CT
Sbjct: 427 RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 460
>ref|XP_543536.1| PREDICTED: similar to Zinc finger protein 70 (Zinc finger protein
N27C7-1) [Canis familiaris].
Length = 449
Score = 49.7 bits (117), Expect = 5e-06
Identities = 26/77 (33%), Positives = 36/77 (46%)
Frame = +2
Query: 947 SDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGRRYCCGECGKAFLQLC 1126
S + P + T E ++ + P H +PP + Y C ECGKAF Q
Sbjct: 109 SGEEPSKHNTCEKASRAHSGPKEP----HRTAPPA---------KPYACRECGKAFSQSS 155
Query: 1127 HLKKHAFVHTGHKPFLC 1177
HL +H +HTG KP+ C
Sbjct: 156 HLLRHLVIHTGEKPYEC 172
>ref|XP_547020.2| PREDICTED: similar to zinc finger protein 553 [Canis familiaris].
Length = 626
Score = 49.3 bits (116), Expect = 7e-06
Identities = 52/182 (28%), Positives = 69/182 (37%), Gaps = 31/182 (17%)
Frame = +2
Query: 725 PQTQDHVSKESQSLGPLPEDGS---------------VDEEVPPQTQMSPG-PQSTSAPQ 856
PQ D KE + L P E G+ V EVP + Q G P+ P+
Sbjct: 45 PQEDDLGFKEEEDLAPGHEVGNASLKPEGIQTWDDLWVQREVPGKPQARDGGPRLLGEPR 104
Query: 857 QGPXXXXXXXXXXXRGPQLR--AHLGKRLRSPSDQRPPRVKTSEPG-----AQQTGEQQH 1015
G G R + L K R+ + ++P + G A+ ++ H
Sbjct: 105 WGQASDRAAVCGEC-GKSFRQMSDLVKHQRTHTGEKPYKCAVCGKGFGDSSARIKHQRTH 163
Query: 1016 PGFPAHLRSPPGCAGGSPKQGRRYC--------CGECGKAFLQLCHLKKHAFVHTGHKPF 1171
G + PP A G PK R CGECGK+F Q L KH HTG KP+
Sbjct: 164 SGEKPYRARPP--AQGPPKIPRSRIPAGERPTICGECGKSFRQSSDLVKHQRTHTGEKPY 221
Query: 1172 LC 1177
C
Sbjct: 222 KC 223
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,305,456
Number of extensions: 1867397
Number of successful extensions: 16102
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 15830
Number of HSP's successfully gapped: 10
Length of query: 393
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 288
Effective length of database: 15,374,224
Effective search space: 4427776512
Effective search space used: 4427776512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009348
(1181 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122888.2| PREDICTED: zinc finger protein 408-like [Sus... 791 0.0
Alignment gi|XP_003122872.2| PREDICTED: zinc finger protein 408-like [Sus... 782 0.0
Alignment gi|XP_003124368.2| PREDICTED: zinc finger protein with KRAB and... 56 3e-08
Alignment gi|XP_003134959.1| PREDICTED: zinc finger protein 746-like [Sus... 55 6e-08
Alignment gi|XP_003135022.2| PREDICTED: transcription factor YY2-like [Su... 53 4e-07
Alignment gi|XP_003355276.1| PREDICTED: zinc finger protein 697 [Sus scro... 52 8e-07
Alignment gi|XP_003356850.1| PREDICTED: transcriptional repressor protein... 51 1e-06
Alignment gi|XP_001926840.2| PREDICTED: zinc finger protein 70-like [Sus ... 50 2e-06
Alignment gi|XP_001929040.1| PREDICTED: zinc finger protein with KRAB and... 50 2e-06
Alignment gi|XP_003356154.1| PREDICTED: hypothetical protein LOC100518738... 50 2e-06
>ref|XP_003122888.2| PREDICTED: zinc finger protein 408-like [Sus scrofa].
Length = 747
Score = 791 bits (2044), Expect = 0.0
Identities = 382/393 (97%), Positives = 382/393 (97%)
Frame = +2
Query: 2 AFRSGMEEAEELLSAKGRLQFVPGPRLDPDSGWSPSGEGCAQGPKDFPARPTRAILALKS 181
AFRSGMEEAEELLSAKGRLQFVPGPRLDPDSGWSPSGEGCAQGPKDFPARPTRAILALKS
Sbjct: 19 AFRSGMEEAEELLSAKGRLQFVPGPRLDPDSGWSPSGEGCAQGPKDFPARPTRAILALKS 78
Query: 182 LPRGLALGPSLTEEQRLGVWCVGEPLQPGLLWGPLEEESVSKQKGDAAEREQKEDVSLDP 361
LPRGLALGPSLTEEQRLGVWCVGEPLQPGLLWGPLEEESVSKQKGDAAEREQKEDVSLDP
Sbjct: 79 LPRGLALGPSLTEEQRLGVWCVGEPLQPGLLWGPLEEESVSKQKGDAAEREQKEDVSLDP 138
Query: 362 WGDVCACEQSSGWMSLVQRGKLEGEGNVAPVWISERLHLQVYRVVLPGFELRLWPRPPAE 541
WGDVCACEQSSGWMSLVQRGKLEGEGNVAPVWISERLHLQVYRVVLPGFELRLWPRPPAE
Sbjct: 139 WGDVCACEQSSGWMSLVQRGKLEGEGNVAPVWISERLHLQVYRVVLPGFELRLWPRPPAE 198
Query: 542 GLSPNQSRLEEEASMAGVTEMESVVQQEVATEEDATEPCTDPGVQSPPNIQAESVVSSGL 721
GLSPNQSRLEEEASMAGVTEMESVVQQEVATEEDATEPCTDPGVQSPPNIQAESVVSSGL
Sbjct: 199 GLSPNQSRLEEEASMAGVTEMESVVQQEVATEEDATEPCTDPGVQSPPNIQAESVVSSGL 258
Query: 722 QPQTQDHVSKESQSLGPLPEDGSVDEEVPPQTQMSPGPQSTSAPQQGPXXXXXXXXXXXR 901
QPQTQDHVSKESQSLGPLPEDGSVDEEVPPQTQMSPGPQSTSAPQQGP R
Sbjct: 259 QPQTQDHVSKESQSLGPLPEDGSVDEEVPPQTQMSPGPQSTSAPQQGPESSEATSSSSAR 318
Query: 902 GPQLRAHLGKRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGR 1081
GPQLRAHLGKRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGR
Sbjct: 319 GPQLRAHLGKRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGR 378
Query: 1082 RYCCGECGKAFLQLCHLKKHAFVHTGHKPFLCT 1180
RYCCGECGKAFLQLCHLKKHAFVHTGHKPFLCT
Sbjct: 379 RYCCGECGKAFLQLCHLKKHAFVHTGHKPFLCT 411
>ref|XP_003122872.2| PREDICTED: zinc finger protein 408-like [Sus scrofa].
Length = 724
Score = 782 bits (2019), Expect = 0.0
Identities = 377/388 (97%), Positives = 377/388 (97%)
Frame = +2
Query: 17 MEEAEELLSAKGRLQFVPGPRLDPDSGWSPSGEGCAQGPKDFPARPTRAILALKSLPRGL 196
MEEAEELLSAKGRLQFVPGPRLDPDSGWSPSGEGCAQGPKDFPARPTRAILALKSLPRGL
Sbjct: 1 MEEAEELLSAKGRLQFVPGPRLDPDSGWSPSGEGCAQGPKDFPARPTRAILALKSLPRGL 60
Query: 197 ALGPSLTEEQRLGVWCVGEPLQPGLLWGPLEEESVSKQKGDAAEREQKEDVSLDPWGDVC 376
ALGPSLTEEQRLGVWCVGEPLQPGLLWGPLEEESVSKQKGDAAEREQKEDVSLDPWGDVC
Sbjct: 61 ALGPSLTEEQRLGVWCVGEPLQPGLLWGPLEEESVSKQKGDAAEREQKEDVSLDPWGDVC 120
Query: 377 ACEQSSGWMSLVQRGKLEGEGNVAPVWISERLHLQVYRVVLPGFELRLWPRPPAEGLSPN 556
ACEQSSGWMSLVQRGKLEGEGNVAPVWISERLHLQVYRVVLPGFELRLWPRPPAEGLSPN
Sbjct: 121 ACEQSSGWMSLVQRGKLEGEGNVAPVWISERLHLQVYRVVLPGFELRLWPRPPAEGLSPN 180
Query: 557 QSRLEEEASMAGVTEMESVVQQEVATEEDATEPCTDPGVQSPPNIQAESVVSSGLQPQTQ 736
QSRLEEEASMAGVTEMESVVQQEVATEEDATEPCTDPGVQSPPNIQAESVVSSGLQPQTQ
Sbjct: 181 QSRLEEEASMAGVTEMESVVQQEVATEEDATEPCTDPGVQSPPNIQAESVVSSGLQPQTQ 240
Query: 737 DHVSKESQSLGPLPEDGSVDEEVPPQTQMSPGPQSTSAPQQGPXXXXXXXXXXXRGPQLR 916
DHVSKESQSLGPLPEDGSVDEEVPPQTQMSPGPQSTSAPQQGP RGPQLR
Sbjct: 241 DHVSKESQSLGPLPEDGSVDEEVPPQTQMSPGPQSTSAPQQGPESSEATSSSSARGPQLR 300
Query: 917 AHLGKRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGRRYCCG 1096
AHLGKRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGRRYCCG
Sbjct: 301 AHLGKRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGRRYCCG 360
Query: 1097 ECGKAFLQLCHLKKHAFVHTGHKPFLCT 1180
ECGKAFLQLCHLKKHAFVHTGHKPFLCT
Sbjct: 361 ECGKAFLQLCHLKKHAFVHTGHKPFLCT 388
>ref|XP_003124368.2| PREDICTED: zinc finger protein with KRAB and SCAN domains 5 [Sus
scrofa].
Length = 701
Score = 56.2 bits (134), Expect = 3e-08
Identities = 45/142 (31%), Positives = 59/142 (41%), Gaps = 12/142 (8%)
Frame = +2
Query: 788 SVDEEVPPQTQMSPGPQSTSAPQQGPXXXXXXXXXXXRGPQLRAHLGKRLRSPSDQRPPR 967
S + E P T SPG ST+AP QG R Q+ GK ++PS +R P
Sbjct: 145 SDEAEAPWMTSGSPG--STAAPSQGFAEVSELQGVVERW-QVSPAGGKSRQNPSQKREPV 201
Query: 968 VKTSEPGAQQTGEQQH------------PGFPAHLRSPPGCAGGSPKQGRRYCCGECGKA 1111
+GE+ H F H R G + + CGECGK+
Sbjct: 202 PDDGNRKPNTSGERGHRCNDCGKFFLQASNFIQHRRIHTG--------EKPFKCGECGKS 253
Query: 1112 FLQLCHLKKHAFVHTGHKPFLC 1177
+ Q HL +H VHTG KP+ C
Sbjct: 254 YNQRVHLTQHQRVHTGEKPYKC 275
>ref|XP_003134959.1| PREDICTED: zinc finger protein 746-like [Sus scrofa].
Length = 632
Score = 55.5 bits (132), Expect = 6e-08
Identities = 64/240 (26%), Positives = 86/240 (35%), Gaps = 13/240 (5%)
Frame = +2
Query: 500 PGFELRLWPRPPAEGLSPNQ-SRLEEEASMAGVTEMESVVQQEVATEEDATEPCTDP--- 667
PG R +P P EG +Q S + + G+ E Q+++A A P
Sbjct: 311 PGQATRFFPSPVQEGAWESQGSSFPSQDPVLGLREPARPEQRDLAEPSPAVAQDEAPPGD 370
Query: 668 ----GVQSPPNIQAESVVSSGLQPQTQDHVSKESQSLGPLPEDGSVDEEVPPQTQMSPGP 835
GV+ N + + V GL P+T S S DG + + PG
Sbjct: 371 WLFGGVRWGWNFRCKPPV--GLNPRTGPEGLPYSSS------DGG-------EAVLDPG- 414
Query: 836 QSTSAPQQGPXXXXXXXXXXXRGPQLRAHLGKRLRSPSDQRPPRVKTSEPGAQQTGEQQH 1015
P P P L+ H PP + A Q
Sbjct: 415 -QAPRPFADPCKYPGRTKGFGHKPGLKKH---------PAAPPGGRPFTCAACGKSFQLQ 464
Query: 1016 PGFPAHLRS---PPGCAG--GSPKQGRRYCCGECGKAFLQLCHLKKHAFVHTGHKPFLCT 1180
AH RS P G G GS + G CGECG+ F + HL +H +HTG +PF CT
Sbjct: 465 VSLSAHQRSCGPPDGAPGAAGSARDGSALRCGECGRCFTRPAHLIRHRMLHTGERPFPCT 524
>ref|XP_003135022.2| PREDICTED: transcription factor YY2-like [Sus scrofa].
Length = 695
Score = 52.8 bits (125), Expect = 4e-07
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +2
Query: 929 KRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGRR-YCCGECG 1105
K+L + +P + K P +T H G P R G R + C ECG
Sbjct: 247 KQLAEFTRMKPKKTKEEAP---RTIACAHKGCPKMFRDNSAMRKHLHTHGPRVHVCAECG 303
Query: 1106 KAFLQLCHLKKHAFVHTGHKPFLCT 1180
KAF++ LK+H VHTG KPF CT
Sbjct: 304 KAFVESSKLKRHQLVHTGEKPFQCT 328
>ref|XP_003355276.1| PREDICTED: zinc finger protein 697 [Sus scrofa].
Length = 553
Score = 51.6 bits (122), Expect = 8e-07
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +2
Query: 1028 AHLRSPPGCAGGSPKQGRRYCCGECGKAFLQLCHLKKHAFVHTGHKPFLC 1177
+H R+ +G P R + CGECGK F++ HL H +HTG KP C
Sbjct: 342 SHRRAHAAASGAGPAALRPFACGECGKGFVRRSHLANHQRIHTGEKPHGC 391
>ref|XP_003356850.1| PREDICTED: transcriptional repressor protein YY1-like [Sus scrofa].
Length = 248
Score = 51.2 bits (121), Expect = 1e-06
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 929 KRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGRR-YCCGECG 1105
K+L + +P ++K E A +T H G R G R + C ECG
Sbjct: 108 KQLAEFARMKPRKIK--EDDAPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECG 165
Query: 1106 KAFLQLCHLKKHAFVHTGHKPFLCT 1180
KAF++ LK+H VHTG KPF CT
Sbjct: 166 KAFVESSKLKRHQLVHTGEKPFQCT 190
>ref|XP_001926840.2| PREDICTED: zinc finger protein 70-like [Sus scrofa].
Length = 448
Score = 50.4 bits (119), Expect = 2e-06
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +2
Query: 986 GAQQTGEQQHPGFPAHLRSPPGCAG--GSPKQGRRYCCGECGKAFLQLCHLKKHAFVHTG 1159
GA+++G+ P PG G G+ + + Y C ECGKAF Q HL +H +HTG
Sbjct: 109 GAEESGK---PNGQTVGSGDPGPEGPHGTVQPAKPYACRECGKAFSQSSHLLRHLVIHTG 165
Query: 1160 HKPFLC 1177
KP+ C
Sbjct: 166 EKPYEC 171
>ref|XP_001929040.1| PREDICTED: zinc finger protein with KRAB and SCAN domains 4 [Sus
scrofa].
Length = 546
Score = 50.4 bits (119), Expect = 2e-06
Identities = 34/101 (33%), Positives = 44/101 (43%), Gaps = 16/101 (15%)
Frame = +2
Query: 923 LGKRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSP----PGCAGGSPKQGR--- 1081
LG +R+ PP EP Q+ G+ P HL P CA ++GR
Sbjct: 259 LGGEIRTKLRDLPPE---EEPPEQEPGQ-----VPCHLGEAIGQIPVCAEAGEQEGRLQR 310
Query: 1082 ---------RYCCGECGKAFLQLCHLKKHAFVHTGHKPFLC 1177
R+ C ECGK+F Q L KH +HTG KP+ C
Sbjct: 311 KQKGAAGTRRHYCHECGKSFAQSSGLTKHRRIHTGEKPYEC 351
>ref|XP_003356154.1| PREDICTED: hypothetical protein LOC100518738 [Sus scrofa].
Length = 1657
Score = 50.4 bits (119), Expect = 2e-06
Identities = 26/71 (36%), Positives = 34/71 (47%)
Frame = +2
Query: 965 RVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGRRYCCGECGKAFLQLCHLKKHA 1144
R +EP GEQ G P R+ P G+ + Y C +CGKAF HL H
Sbjct: 1313 RAPDAEPHPASAGEQTSAGPPGAGRATPV---GARAPDKPYKCADCGKAFNHNAHLTVHK 1369
Query: 1145 FVHTGHKPFLC 1177
+HTG +P+ C
Sbjct: 1370 RIHTGERPYTC 1380
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,063,237
Number of extensions: 1186813
Number of successful extensions: 10282
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 9998
Number of HSP's successfully gapped: 35
Length of query: 393
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 292
Effective length of database: 8,829,335
Effective search space: 2578165820
Effective search space used: 2578165820
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009348
(1181 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028623.1| zinc finger protein 408 [Mus musculus]. 233 3e-61
Alignment gi|NP_001038170.1| zinc finger and SCAN domain-containing prote... 57 2e-08
Alignment gi|NP_001038169.1| zinc finger and SCAN domain-containing prote... 57 2e-08
Alignment gi|NP_001038168.1| zinc finger and SCAN domain-containing prote... 57 2e-08
Alignment gi|NP_035887.2| zinc finger and SCAN domain-containing protein ... 57 2e-08
Alignment gi|NP_038950.3| zinc finger protein 354C [Mus musculus]. 52 9e-07
Alignment gi|NP_033563.2| transcriptional repressor protein YY1 [Mus musc... 51 2e-06
Alignment gi|NP_001104499.1| zinc finger protein 2 [Mus musculus]. 51 2e-06
Alignment gi|NP_082417.3| zinc finger protein 2 [Mus musculus]. 51 2e-06
Alignment gi|NP_033582.2| zinc finger protein 42 [Mus musculus]. 50 3e-06
>ref|NP_001028623.1| zinc finger protein 408 [Mus musculus].
Length = 610
Score = 233 bits (593), Expect = 3e-61
Identities = 135/282 (47%), Positives = 172/282 (60%), Gaps = 1/282 (0%)
Frame = +2
Query: 338 KEDVSLDPWGDVCACEQSSGWMSLVQRGKLEGEGNVAPVWISERLHLQVYRVVLPGFELR 517
+ED SL P G +C +QSS W SLVQ G+L+ +GN + VWI E+LHLQV + +LPGFEL
Sbjct: 6 EEDFSLAPCGAICPRQQSSTWTSLVQEGRLQSDGNASLVWIREKLHLQVDQTILPGFELL 65
Query: 518 LWPRPPAEGLSPNQSRLEEEASMAGVTEMESVVQQEVAT-EEDATEPCTDPGVQSPPNIQ 694
L P+ P + LS +LEEE + G S Q+EVA+ +ED+ CTDPG +S +IQ
Sbjct: 66 LRPQSPQKSLSVLHPKLEEEVAETGEA---SATQEEVASPQEDSAGFCTDPGHESSHSIQ 122
Query: 695 AESVVSSGLQPQTQDHVSKESQSLGPLPEDGSVDEEVPPQTQMSPGPQSTSAPQQGPXXX 874
++++ S +T++ + K+SQ +G L D S+D++ PQT P PQSTSA Q+ P
Sbjct: 123 EDNMLVSESVTKTEEQLFKDSQPIGLLLHDDSMDKQCLPQT--PPEPQSTSAAQKSP-ES 179
Query: 875 XXXXXXXXRGPQLRAHLGKRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGC 1054
G Q+ K+L PS Q P +TSEPG Q P L SP
Sbjct: 180 SEAGLFPPEGAQVETCPAKQLDVPSSQCPSIAQTSEPGTQL------PDLSGLLCSPLDP 233
Query: 1055 AGGSPKQGRRYCCGECGKAFLQLCHLKKHAFVHTGHKPFLCT 1180
AG S K GRRY CGEC KAFLQLCHLKKHAFVHT HKPFLCT
Sbjct: 234 AGSSSKLGRRYRCGECSKAFLQLCHLKKHAFVHTDHKPFLCT 275
>ref|NP_001038170.1| zinc finger and SCAN domain-containing protein 21 [Mus musculus].
Length = 555
Score = 57.4 bits (137), Expect = 2e-08
Identities = 58/209 (27%), Positives = 83/209 (39%), Gaps = 21/209 (10%)
Frame = +2
Query: 617 QQEVATEEDATEPCTDPGVQ--SPPNIQAES--------VVSSGLQPQTQDHV--SKESQ 760
++ V ED + +PG+Q SPPN Q +S L HV S + +
Sbjct: 191 EEAVTLLEDLEQELDEPGLQVSSPPNEQKQSWEKMSTSGTAMESLSSTETQHVDASPKYE 250
Query: 761 SLGPLPEDGSVDEEV----PPQTQ-MSPGPQSTSAPQQGPXXXXXXXXXXXRG---PQLR 916
GPL + +EEV P + Q PQ + + + P +
Sbjct: 251 FWGPLYIQETGEEEVFTQDPRKRQGFKSNPQKEDSADEHRSSEEESHADGLKRTVIPMIP 310
Query: 917 AH-LGKRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGRRYCC 1093
A+ G R R + ++ Q TG ++ PA R PG +RY C
Sbjct: 311 ANKYGSRSERQWANNLERERGTKASLQDTGSRKGAE-PASTRPAPG--------EKRYIC 361
Query: 1094 GECGKAFLQLCHLKKHAFVHTGHKPFLCT 1180
ECGKAF +L KH HTG KP++CT
Sbjct: 362 AECGKAFSNSSNLTKHRRTHTGEKPYVCT 390
>ref|NP_001038169.1| zinc finger and SCAN domain-containing protein 21 [Mus musculus].
Length = 555
Score = 57.4 bits (137), Expect = 2e-08
Identities = 58/209 (27%), Positives = 83/209 (39%), Gaps = 21/209 (10%)
Frame = +2
Query: 617 QQEVATEEDATEPCTDPGVQ--SPPNIQAES--------VVSSGLQPQTQDHV--SKESQ 760
++ V ED + +PG+Q SPPN Q +S L HV S + +
Sbjct: 191 EEAVTLLEDLEQELDEPGLQVSSPPNEQKQSWEKMSTSGTAMESLSSTETQHVDASPKYE 250
Query: 761 SLGPLPEDGSVDEEV----PPQTQ-MSPGPQSTSAPQQGPXXXXXXXXXXXRG---PQLR 916
GPL + +EEV P + Q PQ + + + P +
Sbjct: 251 FWGPLYIQETGEEEVFTQDPRKRQGFKSNPQKEDSADEHRSSEEESHADGLKRTVIPMIP 310
Query: 917 AH-LGKRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGRRYCC 1093
A+ G R R + ++ Q TG ++ PA R PG +RY C
Sbjct: 311 ANKYGSRSERQWANNLERERGTKASLQDTGSRKGAE-PASTRPAPG--------EKRYIC 361
Query: 1094 GECGKAFLQLCHLKKHAFVHTGHKPFLCT 1180
ECGKAF +L KH HTG KP++CT
Sbjct: 362 AECGKAFSNSSNLTKHRRTHTGEKPYVCT 390
>ref|NP_001038168.1| zinc finger and SCAN domain-containing protein 21 [Mus musculus].
Length = 555
Score = 57.4 bits (137), Expect = 2e-08
Identities = 58/209 (27%), Positives = 83/209 (39%), Gaps = 21/209 (10%)
Frame = +2
Query: 617 QQEVATEEDATEPCTDPGVQ--SPPNIQAES--------VVSSGLQPQTQDHV--SKESQ 760
++ V ED + +PG+Q SPPN Q +S L HV S + +
Sbjct: 191 EEAVTLLEDLEQELDEPGLQVSSPPNEQKQSWEKMSTSGTAMESLSSTETQHVDASPKYE 250
Query: 761 SLGPLPEDGSVDEEV----PPQTQ-MSPGPQSTSAPQQGPXXXXXXXXXXXRG---PQLR 916
GPL + +EEV P + Q PQ + + + P +
Sbjct: 251 FWGPLYIQETGEEEVFTQDPRKRQGFKSNPQKEDSADEHRSSEEESHADGLKRTVIPMIP 310
Query: 917 AH-LGKRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGRRYCC 1093
A+ G R R + ++ Q TG ++ PA R PG +RY C
Sbjct: 311 ANKYGSRSERQWANNLERERGTKASLQDTGSRKGAE-PASTRPAPG--------EKRYIC 361
Query: 1094 GECGKAFLQLCHLKKHAFVHTGHKPFLCT 1180
ECGKAF +L KH HTG KP++CT
Sbjct: 362 AECGKAFSNSSNLTKHRRTHTGEKPYVCT 390
>ref|NP_035887.2| zinc finger and SCAN domain-containing protein 21 [Mus musculus].
Length = 555
Score = 57.4 bits (137), Expect = 2e-08
Identities = 58/209 (27%), Positives = 83/209 (39%), Gaps = 21/209 (10%)
Frame = +2
Query: 617 QQEVATEEDATEPCTDPGVQ--SPPNIQAES--------VVSSGLQPQTQDHV--SKESQ 760
++ V ED + +PG+Q SPPN Q +S L HV S + +
Sbjct: 191 EEAVTLLEDLEQELDEPGLQVSSPPNEQKQSWEKMSTSGTAMESLSSTETQHVDASPKYE 250
Query: 761 SLGPLPEDGSVDEEV----PPQTQ-MSPGPQSTSAPQQGPXXXXXXXXXXXRG---PQLR 916
GPL + +EEV P + Q PQ + + + P +
Sbjct: 251 FWGPLYIQETGEEEVFTQDPRKRQGFKSNPQKEDSADEHRSSEEESHADGLKRTVIPMIP 310
Query: 917 AH-LGKRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGRRYCC 1093
A+ G R R + ++ Q TG ++ PA R PG +RY C
Sbjct: 311 ANKYGSRSERQWANNLERERGTKASLQDTGSRKGAE-PASTRPAPG--------EKRYIC 361
Query: 1094 GECGKAFLQLCHLKKHAFVHTGHKPFLCT 1180
ECGKAF +L KH HTG KP++CT
Sbjct: 362 AECGKAFSNSSNLTKHRRTHTGEKPYVCT 390
>ref|NP_038950.3| zinc finger protein 354C [Mus musculus].
Length = 560
Score = 52.0 bits (123), Expect = 9e-07
Identities = 62/240 (25%), Positives = 87/240 (36%), Gaps = 17/240 (7%)
Frame = +2
Query: 509 ELRLWPRPPAEGLSPNQSRLEEEASMAGVTEMES-VVQQEVATEEDATEPCTD------- 664
+ +WP E L P Q L +E S + + V +++ E C D
Sbjct: 85 DFEIWPE--IEALPPKQDVLTKETSHGLIKNGSTKCVYWKISFGELVKTECRDIAQEQEK 142
Query: 665 ----PGVQSPPNIQAESVVSSGLQPQTQDHVSKESQSLGPLPEDGSVDEEVPP--QTQMS 826
PG +SP +E +G +P+ +SK S ++G E VP T
Sbjct: 143 KVHGPGAESPKETTSEDGTPTGFEPEKPLFISKALVS-----QEGDPTESVPATYHTSEK 197
Query: 827 PGPQSTSAP---QQGPXXXXXXXXXXXRGPQLRAHLGKRLRSPSDQRPPRVKTSEPGAQQ 997
PQ Q P +G HL + R + ++P K SE G
Sbjct: 198 DLPQDFDLMRSFQMYPGQKPHVCSECGKGFTQSLHLLEHKRLHTGEKP--YKCSECGKSF 255
Query: 998 TGEQQHPGFPAHLRSPPGCAGGSPKQGRRYCCGECGKAFLQLCHLKKHAFVHTGHKPFLC 1177
+ AH R+ G + Y C EC KAF L KH VHTG KP+ C
Sbjct: 256 S---HRSSLLAHQRTHTG--------EKPYKCSECEKAFGSSSTLIKHLRVHTGEKPYRC 304
>ref|NP_033563.2| transcriptional repressor protein YY1 [Mus musculus].
Length = 414
Score = 51.2 bits (121), Expect = 2e-06
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 929 KRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGRR-YCCGECG 1105
K+L + +P ++K E A +T H G R G R + C ECG
Sbjct: 274 KQLAEFARMKPRKIK--EDDAPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECG 331
Query: 1106 KAFLQLCHLKKHAFVHTGHKPFLCT 1180
KAF++ LK+H VHTG KPF CT
Sbjct: 332 KAFVESSKLKRHQLVHTGEKPFQCT 356
>ref|NP_001104499.1| zinc finger protein 2 [Mus musculus].
Length = 427
Score = 50.8 bits (120), Expect = 2e-06
Identities = 21/32 (65%), Positives = 23/32 (71%)
Frame = +2
Query: 1085 YCCGECGKAFLQLCHLKKHAFVHTGHKPFLCT 1180
Y CGECGKAF Q C L +H VHTG KPF C+
Sbjct: 365 YECGECGKAFSQRCRLTRHQRVHTGEKPFECS 396
>ref|NP_082417.3| zinc finger protein 2 [Mus musculus].
Length = 427
Score = 50.8 bits (120), Expect = 2e-06
Identities = 21/32 (65%), Positives = 23/32 (71%)
Frame = +2
Query: 1085 YCCGECGKAFLQLCHLKKHAFVHTGHKPFLCT 1180
Y CGECGKAF Q C L +H VHTG KPF C+
Sbjct: 365 YECGECGKAFSQRCRLTRHQRVHTGEKPFECS 396
>ref|NP_033582.2| zinc finger protein 42 [Mus musculus].
Length = 288
Score = 50.4 bits (119), Expect = 3e-06
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +2
Query: 1079 RRYCCGECGKAFLQLCHLKKHAFVHTGHKPFLCT 1180
RR+ C ECGKAF + LK+H VHTG KP+ CT
Sbjct: 197 RRHVCAECGKAFTESSKLKRHFLVHTGEKPYQCT 230
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,283,005
Number of extensions: 1505994
Number of successful extensions: 15427
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 14951
Number of HSP's successfully gapped: 31
Length of query: 393
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 290
Effective length of database: 12,523,851
Effective search space: 3631916790
Effective search space used: 3631916790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009348
(1181 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079017.1| zinc finger protein 408 isoform 1 [Homo sapiens]. 523 e-148
Alignment gi|NP_001171680.1| zinc finger protein 408 isoform 2 [Homo sapi... 511 e-145
Alignment gi|NP_001139015.1| zinc finger and SCAN domain-containing prote... 56 6e-08
Alignment gi|NP_001139014.1| zinc finger and SCAN domain-containing prote... 56 6e-08
Alignment gi|NP_076415.3| zinc finger and SCAN domain-containing protein ... 56 6e-08
Alignment gi|NP_001229824.1| zinc finger protein with KRAB and SCAN domai... 54 3e-07
Alignment gi|NP_001229823.1| zinc finger protein with KRAB and SCAN domai... 54 3e-07
Alignment gi|NP_077819.2| zinc finger protein with KRAB and SCAN domains ... 54 3e-07
Alignment gi|NP_001139016.1| zinc finger and SCAN domain-containing prote... 54 4e-07
Alignment gi|NP_001156946.1| zinc finger protein 746 isoform 1 [Homo sapi... 53 5e-07
>ref|NP_079017.1| zinc finger protein 408 isoform 1 [Homo sapiens].
Length = 720
Score = 523 bits (1348), Expect = e-148
Identities = 268/390 (68%), Positives = 297/390 (76%), Gaps = 2/390 (0%)
Frame = +2
Query: 17 MEEAEELL-SAKGRLQFVPGPRLDPDSGWSPSGEGCAQGPKDFPARPTRAILALKSLPRG 193
MEEAEELL K LQ PRL D GW+PSGEGC QG KD P PTR ILALKSLPRG
Sbjct: 1 MEEAEELLLEGKKALQLAREPRLGLDLGWNPSGEGCTQGLKDVPPEPTRDILALKSLPRG 60
Query: 194 LALGPSLTEEQRLGVWCVGEPLQPGLLWGPLEEESVSKQKGDAAEREQKEDVSLDPWGDV 373
LALGPSL +EQRLGVWCVG+PLQPGLLWGPLEEES SK+KG+ + Q+E++SL PWGDV
Sbjct: 61 LALGPSLAKEQRLGVWCVGDPLQPGLLWGPLEEESASKEKGEGVKPRQEENLSLGPWGDV 120
Query: 374 CACEQSSGWMSLVQRGKLEGEGNVAPVWISERLHLQVYRVVLPGFELRLWPRPPAEGLSP 553
CACEQSSGW SLVQRG+LE EGNVAPV ISERLHLQVY++VLPG EL LWP+P +EG S
Sbjct: 121 CACEQSSGWTSLVQRGRLESEGNVAPVRISERLHLQVYQLVLPGSELLLWPQPSSEGPSL 180
Query: 554 NQSRLEEEASMAGVTEMESVVQQEVATE-EDATEPCTDPGVQSPPNIQAESVVSSGLQPQ 730
Q L++EA++A VTE+ES VQQEVA+ EDA EPC DPG QSP IQAE++VS GL+
Sbjct: 181 TQPGLDKEAAVAVVTEVESAVQQEVASPGEDAAEPCIDPGSQSPSGIQAENMVSPGLKFP 240
Query: 731 TQDHVSKESQSLGPLPEDGSVDEEVPPQTQMSPGPQSTSAPQQGPXXXXXXXXXXXRGPQ 910
TQD +SK+SQ LGPL +DG VDEE P Q QM P QS SA QQ P RG Q
Sbjct: 241 TQDRISKDSQPLGPLLQDGDVDEECPAQAQMPPELQSNSATQQDPDGSGASFSSSARGTQ 300
Query: 911 LRAHLGKRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGRRYC 1090
+L K+L SPSDQ PPR KT EPGAQQ+ GFP RSPPG AG SPKQGRRY
Sbjct: 301 PHGYLAKKLHSPSDQCPPRAKTPEPGAQQS------GFPTLSRSPPGPAGSSPKQGRRYR 354
Query: 1091 CGECGKAFLQLCHLKKHAFVHTGHKPFLCT 1180
CGECGKAFLQLCHLKKHAFVHTGHKPFLCT
Sbjct: 355 CGECGKAFLQLCHLKKHAFVHTGHKPFLCT 384
>ref|NP_001171680.1| zinc finger protein 408 isoform 2 [Homo sapiens].
Length = 712
Score = 511 bits (1316), Expect = e-145
Identities = 257/370 (69%), Positives = 286/370 (77%), Gaps = 1/370 (0%)
Frame = +2
Query: 74 PRLDPDSGWSPSGEGCAQGPKDFPARPTRAILALKSLPRGLALGPSLTEEQRLGVWCVGE 253
PRL D GW+PSGEGC QG KD P PTR ILALKSLPRGLALGPSL +EQRLGVWCVG+
Sbjct: 13 PRLGLDLGWNPSGEGCTQGLKDVPPEPTRDILALKSLPRGLALGPSLAKEQRLGVWCVGD 72
Query: 254 PLQPGLLWGPLEEESVSKQKGDAAEREQKEDVSLDPWGDVCACEQSSGWMSLVQRGKLEG 433
PLQPGLLWGPLEEES SK+KG+ + Q+E++SL PWGDVCACEQSSGW SLVQRG+LE
Sbjct: 73 PLQPGLLWGPLEEESASKEKGEGVKPRQEENLSLGPWGDVCACEQSSGWTSLVQRGRLES 132
Query: 434 EGNVAPVWISERLHLQVYRVVLPGFELRLWPRPPAEGLSPNQSRLEEEASMAGVTEMESV 613
EGNVAPV ISERLHLQVY++VLPG EL LWP+P +EG S Q L++EA++A VTE+ES
Sbjct: 133 EGNVAPVRISERLHLQVYQLVLPGSELLLWPQPSSEGPSLTQPGLDKEAAVAVVTEVESA 192
Query: 614 VQQEVATE-EDATEPCTDPGVQSPPNIQAESVVSSGLQPQTQDHVSKESQSLGPLPEDGS 790
VQQEVA+ EDA EPC DPG QSP IQAE++VS GL+ TQD +SK+SQ LGPL +DG
Sbjct: 193 VQQEVASPGEDAAEPCIDPGSQSPSGIQAENMVSPGLKFPTQDRISKDSQPLGPLLQDGD 252
Query: 791 VDEEVPPQTQMSPGPQSTSAPQQGPXXXXXXXXXXXRGPQLRAHLGKRLRSPSDQRPPRV 970
VDEE P Q QM P QS SA QQ P RG Q +L K+L SPSDQ PPR
Sbjct: 253 VDEECPAQAQMPPELQSNSATQQDPDGSGASFSSSARGTQPHGYLAKKLHSPSDQCPPRA 312
Query: 971 KTSEPGAQQTGEQQHPGFPAHLRSPPGCAGGSPKQGRRYCCGECGKAFLQLCHLKKHAFV 1150
KT EPGAQQ+ GFP RSPPG AG SPKQGRRY CGECGKAFLQLCHLKKHAFV
Sbjct: 313 KTPEPGAQQS------GFPTLSRSPPGPAGSSPKQGRRYRCGECGKAFLQLCHLKKHAFV 366
Query: 1151 HTGHKPFLCT 1180
HTGHKPFLCT
Sbjct: 367 HTGHKPFLCT 376
>ref|NP_001139015.1| zinc finger and SCAN domain-containing protein 18 isoform 3 [Homo
sapiens].
Length = 510
Score = 56.2 bits (134), Expect = 6e-08
Identities = 59/223 (26%), Positives = 74/223 (33%)
Frame = +2
Query: 509 ELRLWPRPPAEGLSPNQSRLEEEASMAGVTEMESVVQQEVATEEDATEPCTDPGVQSPPN 688
ELRL R P P R +E A A + V E+ TE + DP P
Sbjct: 265 ELRLVERDPQGSSLPEGGRRQESAGCACEEAAPAGVLPELPTEAPPGDALADP----PSG 320
Query: 689 IQAESVVSSGLQPQTQDHVSKESQSLGPLPEDGSVDEEVPPQTQMSPGPQSTSAPQQGPX 868
E G P QD ES S GS + V Q AP +G
Sbjct: 321 TTEEEEEQPGKAPDPQDPQDAESDSA-----TGSQRQSVIQQP----------APDRGT- 364
Query: 869 XXXXXXXXXXRGPQLRAHLGKRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPP 1048
A LG + P D ++ G + G P
Sbjct: 365 ----------------AKLGTKRPHPEDGDGQSLEGVSSSGDSAGLEAGQG--------P 400
Query: 1049 GCAGGSPKQGRRYCCGECGKAFLQLCHLKKHAFVHTGHKPFLC 1177
G +G+ Y CGECG+AF L HL +H H G K + C
Sbjct: 401 GADEPGLSRGKPYACGECGEAFAWLSHLMEHHSSHGGRKRYAC 443
>ref|NP_001139014.1| zinc finger and SCAN domain-containing protein 18 isoform 1 [Homo
sapiens].
Length = 566
Score = 56.2 bits (134), Expect = 6e-08
Identities = 59/223 (26%), Positives = 74/223 (33%)
Frame = +2
Query: 509 ELRLWPRPPAEGLSPNQSRLEEEASMAGVTEMESVVQQEVATEEDATEPCTDPGVQSPPN 688
ELRL R P P R +E A A + V E+ TE + DP P
Sbjct: 321 ELRLVERDPQGSSLPEGGRRQESAGCACEEAAPAGVLPELPTEAPPGDALADP----PSG 376
Query: 689 IQAESVVSSGLQPQTQDHVSKESQSLGPLPEDGSVDEEVPPQTQMSPGPQSTSAPQQGPX 868
E G P QD ES S GS + V Q AP +G
Sbjct: 377 TTEEEEEQPGKAPDPQDPQDAESDSA-----TGSQRQSVIQQP----------APDRGT- 420
Query: 869 XXXXXXXXXXRGPQLRAHLGKRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPP 1048
A LG + P D ++ G + G P
Sbjct: 421 ----------------AKLGTKRPHPEDGDGQSLEGVSSSGDSAGLEAGQG--------P 456
Query: 1049 GCAGGSPKQGRRYCCGECGKAFLQLCHLKKHAFVHTGHKPFLC 1177
G +G+ Y CGECG+AF L HL +H H G K + C
Sbjct: 457 GADEPGLSRGKPYACGECGEAFAWLSHLMEHHSSHGGRKRYAC 499
>ref|NP_076415.3| zinc finger and SCAN domain-containing protein 18 isoform 3 [Homo
sapiens].
Length = 510
Score = 56.2 bits (134), Expect = 6e-08
Identities = 59/223 (26%), Positives = 74/223 (33%)
Frame = +2
Query: 509 ELRLWPRPPAEGLSPNQSRLEEEASMAGVTEMESVVQQEVATEEDATEPCTDPGVQSPPN 688
ELRL R P P R +E A A + V E+ TE + DP P
Sbjct: 265 ELRLVERDPQGSSLPEGGRRQESAGCACEEAAPAGVLPELPTEAPPGDALADP----PSG 320
Query: 689 IQAESVVSSGLQPQTQDHVSKESQSLGPLPEDGSVDEEVPPQTQMSPGPQSTSAPQQGPX 868
E G P QD ES S GS + V Q AP +G
Sbjct: 321 TTEEEEEQPGKAPDPQDPQDAESDSA-----TGSQRQSVIQQP----------APDRGT- 364
Query: 869 XXXXXXXXXXRGPQLRAHLGKRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPP 1048
A LG + P D ++ G + G P
Sbjct: 365 ----------------AKLGTKRPHPEDGDGQSLEGVSSSGDSAGLEAGQG--------P 400
Query: 1049 GCAGGSPKQGRRYCCGECGKAFLQLCHLKKHAFVHTGHKPFLC 1177
G +G+ Y CGECG+AF L HL +H H G K + C
Sbjct: 401 GADEPGLSRGKPYACGECGEAFAWLSHLMEHHSSHGGRKRYAC 443
>ref|NP_001229824.1| zinc finger protein with KRAB and SCAN domains 3 isoform 2 [Homo
sapiens].
Length = 390
Score = 53.9 bits (128), Expect = 3e-07
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Frame = +2
Query: 983 PGAQQTGEQQHPGFPAHLRSP----PGCAGGSPKQGR------------RYCCGECGKAF 1114
P A++ E++H HLR P CA ++GR R+ C ECGK+F
Sbjct: 116 PPAEELPEKEHGKISCHLREDIAQIPTCAEAGEQEGRLQRKQKNATGGRRHICHECGKSF 175
Query: 1115 LQLCHLKKHAFVHTGHKPFLC 1177
Q L KH +HTG KP+ C
Sbjct: 176 AQSSGLSKHRRIHTGEKPYEC 196
>ref|NP_001229823.1| zinc finger protein with KRAB and SCAN domains 3 isoform 1 [Homo
sapiens].
Length = 538
Score = 53.9 bits (128), Expect = 3e-07
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Frame = +2
Query: 983 PGAQQTGEQQHPGFPAHLRSP----PGCAGGSPKQGR------------RYCCGECGKAF 1114
P A++ E++H HLR P CA ++GR R+ C ECGK+F
Sbjct: 264 PPAEELPEKEHGKISCHLREDIAQIPTCAEAGEQEGRLQRKQKNATGGRRHICHECGKSF 323
Query: 1115 LQLCHLKKHAFVHTGHKPFLC 1177
Q L KH +HTG KP+ C
Sbjct: 324 AQSSGLSKHRRIHTGEKPYEC 344
>ref|NP_077819.2| zinc finger protein with KRAB and SCAN domains 3 isoform 1 [Homo
sapiens].
Length = 538
Score = 53.9 bits (128), Expect = 3e-07
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Frame = +2
Query: 983 PGAQQTGEQQHPGFPAHLRSP----PGCAGGSPKQGR------------RYCCGECGKAF 1114
P A++ E++H HLR P CA ++GR R+ C ECGK+F
Sbjct: 264 PPAEELPEKEHGKISCHLREDIAQIPTCAEAGEQEGRLQRKQKNATGGRRHICHECGKSF 323
Query: 1115 LQLCHLKKHAFVHTGHKPFLC 1177
Q L KH +HTG KP+ C
Sbjct: 324 AQSSGLSKHRRIHTGEKPYEC 344
>ref|NP_001139016.1| zinc finger and SCAN domain-containing protein 18 isoform 2 [Homo
sapiens].
Length = 374
Score = 53.5 bits (127), Expect = 4e-07
Identities = 60/223 (26%), Positives = 76/223 (34%)
Frame = +2
Query: 509 ELRLWPRPPAEGLSPNQSRLEEEASMAGVTEMESVVQQEVATEEDATEPCTDPGVQSPPN 688
ELRL R P +G S R +E A A + V E+ TE + DP P
Sbjct: 130 ELRLVERDP-QGSSLPGGRRQESAGCACEEAAPAGVLPELPTEAPPGDALADP----PSG 184
Query: 689 IQAESVVSSGLQPQTQDHVSKESQSLGPLPEDGSVDEEVPPQTQMSPGPQSTSAPQQGPX 868
E G P QD ES S GS + V Q AP +G
Sbjct: 185 TTEEEEEQPGKAPDPQDPQDAESDSA-----TGSQRQSVIQQP----------APDRGT- 228
Query: 869 XXXXXXXXXXRGPQLRAHLGKRLRSPSDQRPPRVKTSEPGAQQTGEQQHPGFPAHLRSPP 1048
A LG + P D ++ G + G P
Sbjct: 229 ----------------AKLGTKRPHPEDGDGQSLEGVSSSGDSAGLEAGQG--------P 264
Query: 1049 GCAGGSPKQGRRYCCGECGKAFLQLCHLKKHAFVHTGHKPFLC 1177
G +G+ Y CGECG+AF L HL +H H G K + C
Sbjct: 265 GADEPGLSRGKPYACGECGEAFAWLSHLMEHHSSHGGRKRYAC 307
>ref|NP_001156946.1| zinc finger protein 746 isoform 1 [Homo sapiens].
Length = 645
Score = 53.1 bits (126), Expect = 5e-07
Identities = 21/44 (47%), Positives = 27/44 (61%)
Frame = +2
Query: 1049 GCAGGSPKQGRRYCCGECGKAFLQLCHLKKHAFVHTGHKPFLCT 1180
G GGS + G CGECG+ F + HL +H +HTG +PF CT
Sbjct: 499 GSGGGSARDGSALRCGECGRCFTRPAHLIRHRMLHTGERPFPCT 542
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,179,900
Number of extensions: 1825750
Number of successful extensions: 19671
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 19317
Number of HSP's successfully gapped: 31
Length of query: 393
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 288
Effective length of database: 14,835,944
Effective search space: 4272751872
Effective search space used: 4272751872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009348
(1181 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1035 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 1035 bits (522), Expect = 0.0
Identities = 522/522 (100%)
Strand = Plus / Minus
Query: 660 cagaccctggtgtccaatcaccccccaacatccaggcagagagtgtggtgagctccggac 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17182099 cagaccctggtgtccaatcaccccccaacatccaggcagagagtgtggtgagctccggac 17182040
Query: 720 ttcagcctcaaacccaggaccacgtttccaaggagagccaatcactcggcccattgcctg 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17182039 ttcagcctcaaacccaggaccacgtttccaaggagagccaatcactcggcccattgcctg 17181980
Query: 780 aggacggcagcgtagatgaggaggtcccaccccagacacagatgtcacctggacctcaga 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17181979 aggacggcagcgtagatgaggaggtcccaccccagacacagatgtcacctggacctcaga 17181920
Query: 840 gcacctccgctccccagcagggccctgagagcagtgaggccacttcctcgtcttctgcca 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17181919 gcacctccgctccccagcagggccctgagagcagtgaggccacttcctcgtcttctgcca 17181860
Query: 900 ggggcccccagctgcgtgctcacctgggcaagaggttacgaagccccagtgatcagcgcc 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17181859 ggggcccccagctgcgtgctcacctgggcaagaggttacgaagccccagtgatcagcgcc 17181800
Query: 960 cacccagagtgaagacctcagagcctggggcccagcagactggagagcagcagcaccctg 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17181799 cacccagagtgaagacctcagagcctggggcccagcagactggagagcagcagcaccctg 17181740
Query: 1020 gcttccctgcacacttgcggagccctcctggctgtgcaggaggctccccaaaacaggggc 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17181739 gcttccctgcacacttgcggagccctcctggctgtgcaggaggctccccaaaacaggggc 17181680
Query: 1080 gacgatactgctgtggggagtgtggcaaggccttcctgcagctgtgccacctgaagaagc 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17181679 gacgatactgctgtggggagtgtggcaaggccttcctgcagctgtgccacctgaagaagc 17181620
Query: 1140 atgcattcgtgcacacaggccacaagcccttcctttgcactg 1181
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17181619 atgcattcgtgcacacaggccacaagcccttcctttgcactg 17181578
Score = 555 bits (280), Expect = e-155
Identities = 280/280 (100%)
Strand = Plus / Minus
Query: 65 gtccccggcccacgcctggacccggactcaggatggagcccttccggagaaggctgtgca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17184912 gtccccggcccacgcctggacccggactcaggatggagcccttccggagaaggctgtgca 17184853
Query: 125 cagggacccaaagatttcccagccagaccgacccgagccatcctcgctctaaagagcctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17184852 cagggacccaaagatttcccagccagaccgacccgagccatcctcgctctaaagagcctc 17184793
Query: 185 ccccggggcttggccctaggtccctcactgaccgaggaacagcgcttgggggtctggtgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17184792 ccccggggcttggccctaggtccctcactgaccgaggaacagcgcttgggggtctggtgt 17184733
Query: 245 gtcggggaacccttgcagccgggactgctctggggaccactggaagaggagtctgtctct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17184732 gtcggggaacccttgcagccgggactgctctggggaccactggaagaggagtctgtctct 17184673
Query: 305 aagcagaagggtgatgcagcggaaagagagcaaaaagagg 344
||||||||||||||||||||||||||||||||||||||||
Sbjct: 17184672 aagcagaagggtgatgcagcggaaagagagcaaaaagagg 17184633
Score = 513 bits (259), Expect = e-143
Identities = 259/259 (100%)
Strand = Plus / Minus
Query: 404 agtttggtgcagcggggcaagctggagggtgagggaaacgtggctcccgtgtggatcagc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17183405 agtttggtgcagcggggcaagctggagggtgagggaaacgtggctcccgtgtggatcagc 17183346
Query: 464 gagaggctccacctacaggtgtaccgggttgtgctgccaggtttcgagctgcggctgtgg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17183345 gagaggctccacctacaggtgtaccgggttgtgctgccaggtttcgagctgcggctgtgg 17183286
Query: 524 ccccggcctcccgctgagggcctgagccccaaccagtccagactagaggaggaggcaagc 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17183285 ccccggcctcccgctgagggcctgagccccaaccagtccagactagaggaggaggcaagc 17183226
Query: 584 atggctggggtgacagaaatggagtctgttgtacaacaggaagtagccacagaggaagat 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17183225 atggctggggtgacagaaatggagtctgttgtacaacaggaagtagccacagaggaagat 17183166
Query: 644 gcaacagaaccttgcacag 662
|||||||||||||||||||
Sbjct: 17183165 gcaacagaaccttgcacag 17183147
Score = 129 bits (65), Expect = 4e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 1 ggcttttcgatccgggatggaggaggcggaggagcttctctcggcgaagggaagactgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17185281 ggcttttcgatccgggatggaggaggcggaggagcttctctcggcgaagggaagactgca 17185222
Query: 61 gttcg 65
|||||
Sbjct: 17185221 gttcg 17185217
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 342 aggacgtgtcactagacccatggggagatgtgtgtgcttgtgagcagagttcaggctgga 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17183693 aggacgtgtcactagacccatggggagatgtgtgtgcttgtgagcagagttcaggctgga 17183634
Query: 402 tgag 405
||||
Sbjct: 17183633 tgag 17183630
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,510,699
Number of extensions: 266
Number of successful extensions: 266
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 5
Length of query: 1181
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1160
Effective length of database: 2,808,413,156
Effective search space: 3257759260960
Effective search space used: 3257759260960
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)