Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009359
(1258 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092430.1| histone deacetylase 6 [Bos taurus]. 353 2e-97
Alignment gi|NP_001068928.1| histone deacetylase 10 [Bos taurus]. 115 1e-25
Alignment gi|XP_002686748.1| PREDICTED: histone deacetylase 9-like [Bos t... 58 2e-08
Alignment gi|XP_615498.4| PREDICTED: histone deacetylase 9-like [Bos taur... 58 2e-08
Alignment gi|NP_001180070.1| histone deacetylase 7 [Bos taurus]. 57 3e-08
Alignment gi|XP_002687361.1| PREDICTED: histone deacetylase 7-like [Bos t... 57 3e-08
Alignment gi|NP_001033114.2| histone deacetylase 5 [Bos taurus]. 50 4e-06
Alignment gi|XP_002696086.1| PREDICTED: histone deacetylase 5 [Bos taurus]. 50 4e-06
Alignment gi|XP_001790635.2| PREDICTED: histone deacetylase 5 [Bos taurus]. 50 4e-06
Alignment gi|XP_002686643.1| PREDICTED: KIAA0288 protein-like [Bos taurus]. 50 6e-06
>ref|NP_001092430.1| histone deacetylase 6 [Bos taurus].
Length = 1129
Score = 353 bits (906), Expect = 2e-97
Identities = 177/194 (91%), Positives = 184/194 (94%)
Frame = +1
Query: 190 HNPHSPPHDSSVTSKRGVKKGAGLRSSPNLADVKKKGRMKKLSQAAEQDLIVGLQGLDLN 369
HNPHSP HDSS+TSKRGVKK A LRSSP+LA+VKKKGRMKKLSQ AEQDLI+GLQGL+LN
Sbjct: 18 HNPHSPTHDSSITSKRGVKKSAILRSSPSLAEVKKKGRMKKLSQTAEQDLIMGLQGLNLN 77
Query: 370 LEARTPSGTGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLMQEGLLDRCVSFQARFAE 549
LE+RT SGTGLV DEQLNEFHCLWDDSFPE PERLHAIKEQL+QEGLLDRCVSFQARFAE
Sbjct: 78 LESRTLSGTGLVFDEQLNEFHCLWDDSFPERPERLHAIKEQLIQEGLLDRCVSFQARFAE 137
Query: 550 KEELMLVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYTCACLASGSVLRLVDA 729
KEELMLVHSLEYIDLMETTQYMNE EL VLADTYDSVYLHPNSYTCACLASGSVLRLVDA
Sbjct: 138 KEELMLVHSLEYIDLMETTQYMNEEELHVLADTYDSVYLHPNSYTCACLASGSVLRLVDA 197
Query: 730 VLGAEIRNGMAIIR 771
VL AEIRNGMAIIR
Sbjct: 198 VLEAEIRNGMAIIR 211
Score = 111 bits (278), Expect = 1e-24
Identities = 55/126 (43%), Positives = 80/126 (63%)
Frame = +1
Query: 394 TGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELMLVH 573
TGLV D+Q+ + H LWD+ PE P+R+H I L + GL RC S AR A EL+ H
Sbjct: 482 TGLVYDQQMMDHHNLWDNYHPEMPQRIHFIMHHLDELGLAKRCHSLPARPATDAELLTCH 541
Query: 574 SLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYTCACLASGSVLRLVDAVLGAEIRN 753
S E+++ + T+ M ELR YDS+Y+ +++ CA LA+G+ RLV+AVL E+ N
Sbjct: 542 SAEHLERLRATEKMKTRELRREGANYDSIYICSSTFACAQLAAGAACRLVEAVLAGEVLN 601
Query: 754 GMAIIR 771
G+A++R
Sbjct: 602 GVAVVR 607
>ref|NP_001068928.1| histone deacetylase 10 [Bos taurus].
Length = 670
Score = 115 bits (287), Expect = 1e-25
Identities = 62/129 (48%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Frame = +1
Query: 391 GTGLVLDEQLNEFHCLWDDSFPE--GPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELM 564
GT LV E + LWDD E PERL E+L Q GL RC+ AR A + EL
Sbjct: 2 GTALVYHEDMTATRLLWDDPECEIECPERLTTALERLQQHGLKQRCLQLVAREASEAELG 61
Query: 565 LVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYTCACLASGSVLRLVDAVLGAE 744
LVHS EY+ L++ TQ + EL+ L+ YD+VYLHP+++ CA LA G+ L+LVDAVL
Sbjct: 62 LVHSPEYVALLQGTQALGTRELQALSKEYDAVYLHPSTFHCARLAVGAALQLVDAVLTGA 121
Query: 745 IRNGMAIIR 771
+RNG+A++R
Sbjct: 122 VRNGLALVR 130
>ref|XP_002686748.1| PREDICTED: histone deacetylase 9-like [Bos taurus].
Length = 1135
Score = 57.8 bits (138), Expect = 2e-08
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 21/152 (13%)
Frame = +1
Query: 379 RTPSGTGLVLDEQLNEFHCLWDDS--FPEGPERLHAIKEQLMQEGLLDRCVSFQARFAEK 552
R S TG+ D + + C+ +S PE R+ +I +L + GLL++C Q R A
Sbjct: 697 RPGSATGIAYDPLMLKHQCICGNSTTHPEHAGRIQSIWSRLQETGLLNKCERIQGRKASL 756
Query: 553 EELMLVHSLEYIDLMETTQYMNEGEL---RVLADT----------------YDSVYLHPN 675
EE+ LVHS E+ L+ T ++ +L +L D+ D+++ +
Sbjct: 757 EEIQLVHS-EHHSLLYGTNPLDGQKLDPRTLLGDSSQKFFSSLPCGGLGVDSDTIWNELH 815
Query: 676 SYTCACLASGSVLRLVDAVLGAEIRNGMAIIR 771
S A +A G V+ L V E++NG A++R
Sbjct: 816 SSGAARMAVGCVIELASRVASGELKNGFAVVR 847
>ref|XP_615498.4| PREDICTED: histone deacetylase 9-like [Bos taurus].
Length = 1135
Score = 57.8 bits (138), Expect = 2e-08
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 21/152 (13%)
Frame = +1
Query: 379 RTPSGTGLVLDEQLNEFHCLWDDS--FPEGPERLHAIKEQLMQEGLLDRCVSFQARFAEK 552
R S TG+ D + + C+ +S PE R+ +I +L + GLL++C Q R A
Sbjct: 697 RPGSATGIAYDPLMLKHQCICGNSTTHPEHAGRIQSIWSRLQETGLLNKCERIQGRKASL 756
Query: 553 EELMLVHSLEYIDLMETTQYMNEGEL---RVLADT----------------YDSVYLHPN 675
EE+ LVHS E+ L+ T ++ +L +L D+ D+++ +
Sbjct: 757 EEIQLVHS-EHHSLLYGTNPLDGQKLDPRTLLGDSSQKFFSSLPCGGLGVDSDTIWNELH 815
Query: 676 SYTCACLASGSVLRLVDAVLGAEIRNGMAIIR 771
S A +A G V+ L V E++NG A++R
Sbjct: 816 SSGAARMAVGCVIELASRVASGELKNGFAVVR 847
>ref|NP_001180070.1| histone deacetylase 7 [Bos taurus].
Length = 988
Score = 57.4 bits (137), Expect = 3e-08
Identities = 49/154 (31%), Positives = 73/154 (47%), Gaps = 22/154 (14%)
Frame = +1
Query: 376 ART-PSGTGLVLDEQLNEFHCLWDDS--FPEGPERLHAIKEQLMQEGLLDRCVSFQARFA 546
ART P TGLV D + + C D+ PE R+ +I +L++ GL +C S + R A
Sbjct: 549 ARTLPFTTGLVYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLLERGLRSQCESLRGRKA 608
Query: 547 EKEELMLVHSLEYIDLMETTQY----MNEGELRVL---------------ADTYDSVYLH 669
EEL VHS ++ L T ++ G+L L DT D+++
Sbjct: 609 SLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDT-DTIWNE 667
Query: 670 PNSYTCACLASGSVLRLVDAVLGAEIRNGMAIIR 771
+S A A+GSV L V E++NG A++R
Sbjct: 668 LHSSNAARWAAGSVTDLAFKVASRELKNGFAVVR 701
>ref|XP_002687361.1| PREDICTED: histone deacetylase 7-like [Bos taurus].
Length = 988
Score = 57.4 bits (137), Expect = 3e-08
Identities = 49/154 (31%), Positives = 73/154 (47%), Gaps = 22/154 (14%)
Frame = +1
Query: 376 ART-PSGTGLVLDEQLNEFHCLWDDS--FPEGPERLHAIKEQLMQEGLLDRCVSFQARFA 546
ART P TGLV D + + C D+ PE R+ +I +L++ GL +C S + R A
Sbjct: 549 ARTLPFTTGLVYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLLERGLRSQCESLRGRKA 608
Query: 547 EKEELMLVHSLEYIDLMETTQY----MNEGELRVL---------------ADTYDSVYLH 669
EEL VHS ++ L T ++ G+L L DT D+++
Sbjct: 609 SLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDT-DTIWNE 667
Query: 670 PNSYTCACLASGSVLRLVDAVLGAEIRNGMAIIR 771
+S A A+GSV L V E++NG A++R
Sbjct: 668 LHSSNAARWAAGSVTDLAFKVASRELKNGFAVVR 701
>ref|NP_001033114.2| histone deacetylase 5 [Bos taurus].
Length = 1125
Score = 50.1 bits (118), Expect = 4e-06
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Frame = +1
Query: 394 TGLVLDEQLNEFHCLWDDSF--PEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELML 567
TG+V D + + C+ ++ PE R+ +I +L + GLL +C + R A +E+
Sbjct: 686 TGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQT 745
Query: 568 VHSLEYIDLMETTQYMNEGELRV-------------------LADTYDSVYLHPNSYTCA 690
VHS EY L+ T +N +L + D+V+ +S +
Sbjct: 746 VHS-EYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAMLPCGGIGVDSDTVWNEMHSSSAV 804
Query: 691 CLASGSVLRLVDAVLGAEIRNGMAIIR 771
+A G ++ L V E++NG AIIR
Sbjct: 805 RMAVGCLVELAFKVAAGELKNGFAIIR 831
>ref|XP_002696086.1| PREDICTED: histone deacetylase 5 [Bos taurus].
Length = 1122
Score = 50.1 bits (118), Expect = 4e-06
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Frame = +1
Query: 394 TGLVLDEQLNEFHCLWDDSF--PEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELML 567
TG+V D + + C+ ++ PE R+ +I +L + GLL +C + R A +E+
Sbjct: 683 TGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQT 742
Query: 568 VHSLEYIDLMETTQYMNEGELRV-------------------LADTYDSVYLHPNSYTCA 690
VHS EY L+ T +N +L + D+V+ +S +
Sbjct: 743 VHS-EYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAMLPCGGIGVDSDTVWNEMHSSSAV 801
Query: 691 CLASGSVLRLVDAVLGAEIRNGMAIIR 771
+A G ++ L V E++NG AIIR
Sbjct: 802 RMAVGCLVELAFKVAAGELKNGFAIIR 828
>ref|XP_001790635.2| PREDICTED: histone deacetylase 5 [Bos taurus].
Length = 1122
Score = 50.1 bits (118), Expect = 4e-06
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Frame = +1
Query: 394 TGLVLDEQLNEFHCLWDDSF--PEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELML 567
TG+V D + + C+ ++ PE R+ +I +L + GLL +C + R A +E+
Sbjct: 683 TGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQT 742
Query: 568 VHSLEYIDLMETTQYMNEGELRV-------------------LADTYDSVYLHPNSYTCA 690
VHS EY L+ T +N +L + D+V+ +S +
Sbjct: 743 VHS-EYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAMLPCGGIGVDSDTVWNEMHSSSAV 801
Query: 691 CLASGSVLRLVDAVLGAEIRNGMAIIR 771
+A G ++ L V E++NG AIIR
Sbjct: 802 RMAVGCLVELAFKVAAGELKNGFAIIR 828
>ref|XP_002686643.1| PREDICTED: KIAA0288 protein-like [Bos taurus].
Length = 1081
Score = 49.7 bits (117), Expect = 6e-06
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 20/146 (13%)
Frame = +1
Query: 394 TGLVLDEQLNEFHCLWDD--SFPEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELML 567
TGLV D + + C + S PE R+ +I +L + GL +C + R A EEL
Sbjct: 651 TGLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQT 710
Query: 568 VHSLEYIDLMETTQYMNEGEL---RVLAD---------------TYDSVYLHPNSYTCAC 693
VHS E L+ T +N +L ++L D+++ +S A
Sbjct: 711 VHS-ETHALLYGTNPLNRQKLDSKKLLGSLTSVFVRLPCGGVGVDSDTIWNEVHSSGAAR 769
Query: 694 LASGSVLRLVDAVLGAEIRNGMAIIR 771
LA G V+ LV V E++NG A++R
Sbjct: 770 LAVGCVVELVFKVATGELKNGFAVVR 795
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,682,576
Number of extensions: 1228409
Number of successful extensions: 2848
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2836
Number of HSP's successfully gapped: 12
Length of query: 419
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 314
Effective length of database: 14,207,134
Effective search space: 4461040076
Effective search space used: 4461040076
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009359
(1258 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855362.1| PREDICTED: similar to Histone deacetylase 6 (HD... 372 e-103
Alignment gi|XP_848669.1| PREDICTED: similar to histone deacetylase 10 [C... 106 4e-23
Alignment gi|XP_862729.1| PREDICTED: similar to histone deacetylase 9 iso... 59 1e-08
Alignment gi|XP_539456.2| PREDICTED: similar to histone deacetylase 9 iso... 59 1e-08
Alignment gi|XP_862682.1| PREDICTED: similar to histone deacetylase 9 iso... 59 1e-08
Alignment gi|XP_543715.2| PREDICTED: similar to histone deacetylase 7A is... 55 2e-07
Alignment gi|XP_863877.1| PREDICTED: similar to histone deacetylase 7A is... 55 2e-07
Alignment gi|XP_856866.1| PREDICTED: similar to Histone deacetylase 5 (HD... 53 7e-07
Alignment gi|XP_856825.1| PREDICTED: similar to Histone deacetylase 5 (HD... 53 7e-07
Alignment gi|XP_856990.1| PREDICTED: similar to Histone deacetylase 5 (HD... 50 5e-06
>ref|XP_855362.1| PREDICTED: similar to Histone deacetylase 6 (HD6) [Canis
familiaris].
Length = 1212
Score = 372 bits (956), Expect = e-103
Identities = 187/221 (84%), Positives = 196/221 (88%)
Frame = +1
Query: 109 NRVRGEVSPAMXXXXXXXXXXXXXXXXHNPHSPPHDSSVTSKRGVKKGAGLRSSPNLADV 288
+R+RGEVSP M HNPHSPPHDSSVTSKRGVKKGA SSP+LA+V
Sbjct: 60 SRIRGEVSPTMTSTGQDSTTTRQRRSRHNPHSPPHDSSVTSKRGVKKGALRHSSPSLAEV 119
Query: 289 KKKGRMKKLSQAAEQDLIVGLQGLDLNLEARTPSGTGLVLDEQLNEFHCLWDDSFPEGPE 468
KKKGRMKKLSQAAEQDLIVGLQGLDLNLEA+T GTGLV DEQLNEFHCLWDDSFPEGPE
Sbjct: 120 KKKGRMKKLSQAAEQDLIVGLQGLDLNLEAKTLCGTGLVFDEQLNEFHCLWDDSFPEGPE 179
Query: 469 RLHAIKEQLMQEGLLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRVLADT 648
RLHAIKEQL+Q+GLLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELR+LADT
Sbjct: 180 RLHAIKEQLIQDGLLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRILADT 239
Query: 649 YDSVYLHPNSYTCACLASGSVLRLVDAVLGAEIRNGMAIIR 771
YDSVYLHPNSYTCACLASGSVLRLVDAVL EIRNGMAI+R
Sbjct: 240 YDSVYLHPNSYTCACLASGSVLRLVDAVLRNEIRNGMAIVR 280
Score = 103 bits (258), Expect = 3e-22
Identities = 52/126 (41%), Positives = 76/126 (60%)
Frame = +1
Query: 394 TGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELMLVH 573
TGLV D + + LWD+ PE P+R+ I +L + GL RC++ R A EL+ H
Sbjct: 549 TGLVYDPAMMGHYNLWDNHHPEMPQRVFRIMRRLEELGLAGRCLTLPTRPATDAELLTCH 608
Query: 574 SLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYTCACLASGSVLRLVDAVLGAEIRN 753
S EY+ + T+ M EL +DS+Y+ P+++ CA LA+GSV RLV+AVL E+ N
Sbjct: 609 SAEYVGRLRATEKMKTRELHREGSNFDSIYICPSTFACAQLATGSVCRLVEAVLAREVLN 668
Query: 754 GMAIIR 771
G A++R
Sbjct: 669 GTAVVR 674
>ref|XP_848669.1| PREDICTED: similar to histone deacetylase 10 [Canis familiaris].
Length = 830
Score = 106 bits (265), Expect = 4e-23
Identities = 58/128 (45%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
Frame = +1
Query: 394 TGLVLDEQLNEFHCLWDDSFPE--GPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELML 567
T LV E + LW+D E PERL A +L Q GL RC+ R A + EL L
Sbjct: 3 TALVYHEDMTAARLLWEDPECEIERPERLTAALRRLQQGGLEQRCLQLAPREASEAELGL 62
Query: 568 VHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYTCACLASGSVLRLVDAVLGAEI 747
VHS EY+ L+ TQ ++ ELR L+ YD+VY HP+++ CA LA G+ L+LVDAVL +
Sbjct: 63 VHSPEYVSLLRGTQALDTQELRALSGQYDAVYFHPSTFHCARLAVGAALQLVDAVLMGAV 122
Query: 748 RNGMAIIR 771
NG+A++R
Sbjct: 123 HNGLALVR 130
>ref|XP_862729.1| PREDICTED: similar to histone deacetylase 9 isoform 2 isoform 4
[Canis familiaris].
Length = 875
Score = 58.5 bits (140), Expect = 1e-08
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 21/149 (14%)
Frame = +1
Query: 388 SGTGLVLDEQLNEFHCLWDDS--FPEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEEL 561
S TG+ D + + C+ +S PE R+ +I +L + GLL++C Q R A EE+
Sbjct: 627 SATGIAYDPLMLKHQCICGNSTTHPEHAGRIQSIWSRLQETGLLNKCERIQGRKASLEEI 686
Query: 562 MLVHSLEYIDLMETTQYMNEGEL---RVLADT----------------YDSVYLHPNSYT 684
LVHS E+ L+ T ++ +L +L DT D+++ +S
Sbjct: 687 QLVHS-EHHSLLYGTNPLDGQKLDPRTLLGDTSQKIFSSLPCGGLGVDSDTIWNELHSSG 745
Query: 685 CACLASGSVLRLVDAVLGAEIRNGMAIIR 771
A +A G V+ L V E++NG A++R
Sbjct: 746 AARMAVGCVIELASKVASGELKNGFAVVR 774
>ref|XP_539456.2| PREDICTED: similar to histone deacetylase 9 isoform 2 isoform 1
[Canis familiaris].
Length = 875
Score = 58.5 bits (140), Expect = 1e-08
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 21/149 (14%)
Frame = +1
Query: 388 SGTGLVLDEQLNEFHCLWDDS--FPEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEEL 561
S TG+ D + + C+ +S PE R+ +I +L + GLL++C Q R A EE+
Sbjct: 627 SATGIAYDPLMLKHQCICGNSTTHPEHAGRIQSIWSRLQETGLLNKCERIQGRKASLEEI 686
Query: 562 MLVHSLEYIDLMETTQYMNEGEL---RVLADT----------------YDSVYLHPNSYT 684
LVHS E+ L+ T ++ +L +L DT D+++ +S
Sbjct: 687 QLVHS-EHHSLLYGTNPLDGQKLDPRTLLGDTSQKIFSSLPCGGLGVDSDTIWNELHSSG 745
Query: 685 CACLASGSVLRLVDAVLGAEIRNGMAIIR 771
A +A G V+ L V E++NG A++R
Sbjct: 746 AARMAVGCVIELASKVASGELKNGFAVVR 774
>ref|XP_862682.1| PREDICTED: similar to histone deacetylase 9 isoform 5 isoform 3
[Canis familiaris].
Length = 748
Score = 58.5 bits (140), Expect = 1e-08
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 21/149 (14%)
Frame = +1
Query: 388 SGTGLVLDEQLNEFHCLWDDS--FPEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEEL 561
S TG+ D + + C+ +S PE R+ +I +L + GLL++C Q R A EE+
Sbjct: 589 SATGIAYDPLMLKHQCICGNSTTHPEHAGRIQSIWSRLQETGLLNKCERIQGRKASLEEI 648
Query: 562 MLVHSLEYIDLMETTQYMNEGEL---RVLADT----------------YDSVYLHPNSYT 684
LVHS E+ L+ T ++ +L +L DT D+++ +S
Sbjct: 649 QLVHS-EHHSLLYGTNPLDGQKLDPRTLLGDTSQKIFSSLPCGGLGVDSDTIWNELHSSG 707
Query: 685 CACLASGSVLRLVDAVLGAEIRNGMAIIR 771
A +A G V+ L V E++NG A++R
Sbjct: 708 AARMAVGCVIELASKVASGELKNGFAVVR 736
>ref|XP_543715.2| PREDICTED: similar to histone deacetylase 7A isoform a isoform 1
[Canis familiaris].
Length = 962
Score = 54.7 bits (130), Expect = 2e-07
Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 22/154 (14%)
Frame = +1
Query: 376 ART-PSGTGLVLDEQLNEFHCLWDDS--FPEGPERLHAIKEQLMQEGLLDRCVSFQARFA 546
ART P TGLV D + + C D+ PE R+ +I +L + GL +C + R A
Sbjct: 523 ARTLPFTTGLVYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKA 582
Query: 547 EKEELMLVHSLEYIDLMETTQY----MNEGELRVL---------------ADTYDSVYLH 669
EEL VHS ++ L T ++ G+L L DT D+++
Sbjct: 583 SLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDT-DTIWNE 641
Query: 670 PNSYTCACLASGSVLRLVDAVLGAEIRNGMAIIR 771
+S A A+GSV L V E++NG A++R
Sbjct: 642 LHSSNAARWAAGSVTDLAFKVASRELKNGFAVVR 675
>ref|XP_863877.1| PREDICTED: similar to histone deacetylase 7A isoform b isoform 2
[Canis familiaris].
Length = 901
Score = 54.7 bits (130), Expect = 2e-07
Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 22/154 (14%)
Frame = +1
Query: 376 ART-PSGTGLVLDEQLNEFHCLWDDS--FPEGPERLHAIKEQLMQEGLLDRCVSFQARFA 546
ART P TGLV D + + C D+ PE R+ +I +L + GL +C + R A
Sbjct: 462 ARTLPFTTGLVYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKA 521
Query: 547 EKEELMLVHSLEYIDLMETTQY----MNEGELRVL---------------ADTYDSVYLH 669
EEL VHS ++ L T ++ G+L L DT D+++
Sbjct: 522 SLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDT-DTIWNE 580
Query: 670 PNSYTCACLASGSVLRLVDAVLGAEIRNGMAIIR 771
+S A A+GSV L V E++NG A++R
Sbjct: 581 LHSSNAARWAAGSVTDLAFKVASRELKNGFAVVR 614
>ref|XP_856866.1| PREDICTED: similar to Histone deacetylase 5 (HD5) (Antigen NY-CO-9)
isoform 5 [Canis familiaris].
Length = 993
Score = 52.8 bits (125), Expect = 7e-07
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Frame = +1
Query: 394 TGLVLDEQLNEFHCLWDDSF--PEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELML 567
TG+V D + + C+ ++ PE R+ +I +L + GLL +C + R A +E+
Sbjct: 555 TGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQT 614
Query: 568 VHSLEYIDLMETTQYMNEGE------LRVLADTY------------DSVYLHPNSYTCAC 693
VHS EY L+ T +N + L LA Y D+V+ +S +
Sbjct: 615 VHS-EYHTLLYGTSPLNRQKLDSKKLLGELAGMYAMLPCGGIGVDSDTVWNEMHSSSAVR 673
Query: 694 LASGSVLRLVDAVLGAEIRNGMAIIR 771
+A G ++ L V E++NG AIIR
Sbjct: 674 MAVGCLVELAFKVAAGELKNGFAIIR 699
>ref|XP_856825.1| PREDICTED: similar to Histone deacetylase 5 (HD5) (Antigen NY-CO-9)
isoform 4 [Canis familiaris].
Length = 1098
Score = 52.8 bits (125), Expect = 7e-07
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Frame = +1
Query: 394 TGLVLDEQLNEFHCLWDDSF--PEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELML 567
TG+V D + + C+ ++ PE R+ +I +L + GLL +C + R A +E+
Sbjct: 660 TGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQT 719
Query: 568 VHSLEYIDLMETTQYMNEGE------LRVLADTY------------DSVYLHPNSYTCAC 693
VHS EY L+ T +N + L LA Y D+V+ +S +
Sbjct: 720 VHS-EYHTLLYGTSPLNRQKLDSKKLLGELAGMYAMLPCGGIGVDSDTVWNEMHSSSAVR 778
Query: 694 LASGSVLRLVDAVLGAEIRNGMAIIR 771
+A G ++ L V E++NG AIIR
Sbjct: 779 MAVGCLVELAFKVAAGELKNGFAIIR 804
>ref|XP_856990.1| PREDICTED: similar to Histone deacetylase 5 (HD5) (Antigen NY-CO-9)
isoform 8 [Canis familiaris].
Length = 994
Score = 50.1 bits (118), Expect = 5e-06
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Frame = +1
Query: 394 TGLVLDEQLNEFHCLWDDSF--PEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELML 567
TG+V D + + C+ ++ PE R+ +I +L + GLL +C + R A +E+
Sbjct: 555 TGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQT 614
Query: 568 VHSLEYIDLMETTQYMNEGELRV-------------------LADTYDSVYLHPNSYTCA 690
VHS EY L+ T +N +L + D+V+ +S +
Sbjct: 615 VHS-EYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAMLPCGGIGVDSDTVWNEMHSSSAV 673
Query: 691 CLASGSVLRLVDAVLGAEIRNGMAIIR 771
+A G ++ L V E++NG AIIR
Sbjct: 674 RMAVGCLVELAFKVAAGELKNGFAIIR 700
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,161,831
Number of extensions: 1023472
Number of successful extensions: 2795
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2773
Number of HSP's successfully gapped: 14
Length of query: 419
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 314
Effective length of database: 15,374,224
Effective search space: 4827506336
Effective search space used: 4827506336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009359
(1258 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360358.1| PREDICTED: histone deacetylase 6-like [Sus s... 390 e-109
Alignment gi|XP_003126824.1| PREDICTED: histone deacetylase 10-like [Sus ... 111 1e-24
Alignment gi|XP_003360363.1| PREDICTED: histone deacetylase 6-like [Sus s... 108 6e-24
Alignment gi|XP_003362118.1| PREDICTED: histone deacetylase 10-like [Sus ... 64 1e-10
Alignment gi|XP_003131417.2| PREDICTED: histone deacetylase 5-like [Sus s... 50 3e-06
>ref|XP_003360358.1| PREDICTED: histone deacetylase 6-like [Sus scrofa].
Length = 272
Score = 390 bits (1002), Expect = e-109
Identities = 194/194 (100%), Positives = 194/194 (100%)
Frame = +1
Query: 190 HNPHSPPHDSSVTSKRGVKKGAGLRSSPNLADVKKKGRMKKLSQAAEQDLIVGLQGLDLN 369
HNPHSPPHDSSVTSKRGVKKGAGLRSSPNLADVKKKGRMKKLSQAAEQDLIVGLQGLDLN
Sbjct: 18 HNPHSPPHDSSVTSKRGVKKGAGLRSSPNLADVKKKGRMKKLSQAAEQDLIVGLQGLDLN 77
Query: 370 LEARTPSGTGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLMQEGLLDRCVSFQARFAE 549
LEARTPSGTGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLMQEGLLDRCVSFQARFAE
Sbjct: 78 LEARTPSGTGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLMQEGLLDRCVSFQARFAE 137
Query: 550 KEELMLVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYTCACLASGSVLRLVDA 729
KEELMLVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYTCACLASGSVLRLVDA
Sbjct: 138 KEELMLVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYTCACLASGSVLRLVDA 197
Query: 730 VLGAEIRNGMAIIR 771
VLGAEIRNGMAIIR
Sbjct: 198 VLGAEIRNGMAIIR 211
>ref|XP_003126824.1| PREDICTED: histone deacetylase 10-like [Sus scrofa].
Length = 671
Score = 111 bits (277), Expect = 1e-24
Identities = 59/129 (45%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Frame = +1
Query: 391 GTGLVLDEQLNEFHCLWDDSFPE--GPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELM 564
GT LV E + LWDD E PERL E+L Q GL RC+ AR A + EL
Sbjct: 2 GTALVYHEDMTAARLLWDDPECEIERPERLTTALERLRQRGLEQRCLRLVAREASEAELG 61
Query: 565 LVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYTCACLASGSVLRLVDAVLGAE 744
LVHS EY+ L+ TQ ++ EL+ L+ +D+VY HP+++ CA LA+G+ L+LVDAV+
Sbjct: 62 LVHSPEYVALLRGTQALSTEELQALSRQFDAVYFHPSTFHCARLAAGAALQLVDAVMAGV 121
Query: 745 IRNGMAIIR 771
+RNG+A++R
Sbjct: 122 VRNGLALVR 130
>ref|XP_003360363.1| PREDICTED: histone deacetylase 6-like [Sus scrofa].
Length = 648
Score = 108 bits (270), Expect = 6e-24
Identities = 53/126 (42%), Positives = 78/126 (61%)
Frame = +1
Query: 394 TGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELMLVH 573
TGLV D+Q+ + + LWD PE P+R+ I +L + GL RC++ AR A EL+ H
Sbjct: 11 TGLVYDQQMMDHYNLWDSHHPEMPQRILRIMRRLEELGLAGRCLALPARPATDAELLACH 70
Query: 574 SLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYTCACLASGSVLRLVDAVLGAEIRN 753
S EY+ + T+ M EL YDS+Y+ P ++ CA LA+G+ RLV+AVL E+ N
Sbjct: 71 SAEYVSRIRATEKMRTRELHREGANYDSIYICPGTFACAQLAAGAACRLVEAVLAGEVLN 130
Query: 754 GMAIIR 771
G+A++R
Sbjct: 131 GIAVVR 136
>ref|XP_003362118.1| PREDICTED: histone deacetylase 10-like [Sus scrofa].
Length = 571
Score = 64.3 bits (155), Expect = 1e-10
Identities = 35/88 (39%), Positives = 52/88 (59%)
Frame = +1
Query: 508 LLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYTC 687
L D C+ AR A + EL L S E EL+ L+ +D+VY HP+++ C
Sbjct: 13 LWDECLRLVAREASEAELGLALSTE--------------ELQALSRQFDAVYFHPSTFHC 58
Query: 688 ACLASGSVLRLVDAVLGAEIRNGMAIIR 771
A LA+G+ L+LVDAV+ +RNG+A++R
Sbjct: 59 ARLAAGAALQLVDAVMAGVVRNGLALVR 86
>ref|XP_003131417.2| PREDICTED: histone deacetylase 5-like [Sus scrofa].
Length = 642
Score = 50.1 bits (118), Expect = 3e-06
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Frame = +1
Query: 394 TGLVLDEQLNEFHCLWDDSF--PEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELML 567
TG+V D + + C+ ++ PE R+ +I +L + GLL +C + R A +E+
Sbjct: 226 TGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQT 285
Query: 568 VHSLEYIDLMETTQYMNEGELRV-------------------LADTYDSVYLHPNSYTCA 690
VHS EY L+ T +N +L + D+V+ +S +
Sbjct: 286 VHS-EYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAVLPCGGIGVDSDTVWNEMHSSSAV 344
Query: 691 CLASGSVLRLVDAVLGAEIRNGMAIIR 771
+A G ++ L V E++NG AIIR
Sbjct: 345 RMAVGCLVELAFKVAAGELKNGFAIIR 371
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,196,911
Number of extensions: 1172921
Number of successful extensions: 1797
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1783
Number of HSP's successfully gapped: 5
Length of query: 419
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 317
Effective length of database: 8,804,438
Effective search space: 2791006846
Effective search space used: 2791006846
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009359
(1258 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001123888.1| histone deacetylase 6 [Mus musculus]. 326 2e-89
Alignment gi|NP_034543.3| histone deacetylase 6 [Mus musculus]. 326 2e-89
Alignment gi|NP_954668.2| histone deacetylase 10 [Mus musculus]. 110 2e-24
Alignment gi|NP_001191210.1| histone deacetylase 7 isoform 8 [Mus musculu... 54 3e-07
Alignment gi|NP_001191208.1| histone deacetylase 7 isoform 6 [Mus musculu... 54 3e-07
Alignment gi|NP_001191207.1| histone deacetylase 7 isoform 5 [Mus musculu... 54 3e-07
Alignment gi|NP_001191206.1| histone deacetylase 7 isoform 3 [Mus musculu... 54 3e-07
Alignment gi|NP_001191205.1| histone deacetylase 7 isoform 2 [Mus musculu... 54 3e-07
Alignment gi|NP_001191204.1| histone deacetylase 7 isoform 1 [Mus musculu... 54 3e-07
Alignment gi|NP_062518.2| histone deacetylase 7 isoform 4 [Mus musculus]. 54 3e-07
>ref|NP_001123888.1| histone deacetylase 6 [Mus musculus].
Length = 1149
Score = 326 bits (836), Expect = 2e-89
Identities = 161/194 (82%), Positives = 175/194 (90%)
Frame = +1
Query: 190 HNPHSPPHDSSVTSKRGVKKGAGLRSSPNLADVKKKGRMKKLSQAAEQDLIVGLQGLDLN 369
HNP SP +SS T KRG KK A SSPNLA+VKKKG+MKKLSQ AE+DL+VGLQGLDLN
Sbjct: 17 HNPQSPLQESSATLKRGGKKCAVPHSSPNLAEVKKKGKMKKLSQPAEEDLVVGLQGLDLN 76
Query: 370 LEARTPSGTGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLMQEGLLDRCVSFQARFAE 549
E R P GTGLV DEQLN+FHCLWDDSFPE PERLHAI+EQL+ EGLL RCVSFQARFAE
Sbjct: 77 PETRVPVGTGLVFDEQLNDFHCLWDDSFPESPERLHAIREQLILEGLLGRCVSFQARFAE 136
Query: 550 KEELMLVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYTCACLASGSVLRLVDA 729
KEELMLVHSLEYIDLMETTQYMNEGELRVLA+TYDSVYLHPNSY+CACLA+GSVLRLVDA
Sbjct: 137 KEELMLVHSLEYIDLMETTQYMNEGELRVLAETYDSVYLHPNSYSCACLATGSVLRLVDA 196
Query: 730 VLGAEIRNGMAIIR 771
++GAEIRNGMA+IR
Sbjct: 197 LMGAEIRNGMAVIR 210
Score = 103 bits (256), Expect = 4e-22
Identities = 52/126 (41%), Positives = 78/126 (61%)
Frame = +1
Query: 394 TGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELMLVH 573
TGLV DE++ LWD+ PE P+R+ I L + GL RC+ AR A EL+ H
Sbjct: 480 TGLVYDEKMMSHCNLWDNHHPETPQRILRIMCHLEEVGLAARCLILPARPALDSELLTCH 539
Query: 574 SLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYTCACLASGSVLRLVDAVLGAEIRN 753
S EY++ + TT+ M +L +DS+Y+ P+++ CA LA+G+ RLV+AVL E+ N
Sbjct: 540 SAEYVEHLRTTEKMKTRDLHREGANFDSIYICPSTFACAKLATGAACRLVEAVLSGEVLN 599
Query: 754 GMAIIR 771
G+A++R
Sbjct: 600 GIAVVR 605
>ref|NP_034543.3| histone deacetylase 6 [Mus musculus].
Length = 1149
Score = 326 bits (836), Expect = 2e-89
Identities = 161/194 (82%), Positives = 175/194 (90%)
Frame = +1
Query: 190 HNPHSPPHDSSVTSKRGVKKGAGLRSSPNLADVKKKGRMKKLSQAAEQDLIVGLQGLDLN 369
HNP SP +SS T KRG KK A SSPNLA+VKKKG+MKKLSQ AE+DL+VGLQGLDLN
Sbjct: 17 HNPQSPLQESSATLKRGGKKCAVPHSSPNLAEVKKKGKMKKLSQPAEEDLVVGLQGLDLN 76
Query: 370 LEARTPSGTGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLMQEGLLDRCVSFQARFAE 549
E R P GTGLV DEQLN+FHCLWDDSFPE PERLHAI+EQL+ EGLL RCVSFQARFAE
Sbjct: 77 PETRVPVGTGLVFDEQLNDFHCLWDDSFPESPERLHAIREQLILEGLLGRCVSFQARFAE 136
Query: 550 KEELMLVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYTCACLASGSVLRLVDA 729
KEELMLVHSLEYIDLMETTQYMNEGELRVLA+TYDSVYLHPNSY+CACLA+GSVLRLVDA
Sbjct: 137 KEELMLVHSLEYIDLMETTQYMNEGELRVLAETYDSVYLHPNSYSCACLATGSVLRLVDA 196
Query: 730 VLGAEIRNGMAIIR 771
++GAEIRNGMA+IR
Sbjct: 197 LMGAEIRNGMAVIR 210
Score = 103 bits (256), Expect = 4e-22
Identities = 52/126 (41%), Positives = 78/126 (61%)
Frame = +1
Query: 394 TGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELMLVH 573
TGLV DE++ LWD+ PE P+R+ I L + GL RC+ AR A EL+ H
Sbjct: 480 TGLVYDEKMMSHCNLWDNHHPETPQRILRIMCHLEEVGLAARCLILPARPALDSELLTCH 539
Query: 574 SLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYTCACLASGSVLRLVDAVLGAEIRN 753
S EY++ + TT+ M +L +DS+Y+ P+++ CA LA+G+ RLV+AVL E+ N
Sbjct: 540 SAEYVEHLRTTEKMKTRDLHREGANFDSIYICPSTFACAKLATGAACRLVEAVLSGEVLN 599
Query: 754 GMAIIR 771
G+A++R
Sbjct: 600 GIAVVR 605
>ref|NP_954668.2| histone deacetylase 10 [Mus musculus].
Length = 666
Score = 110 bits (276), Expect = 2e-24
Identities = 60/129 (46%), Positives = 83/129 (64%), Gaps = 2/129 (1%)
Frame = +1
Query: 391 GTGLVLDEQLNEFHCLWDDSFPE--GPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELM 564
GT LV E + LWDD E PERL A + L Q GL +RC+ A A +EEL
Sbjct: 2 GTALVYHEDMTATRLLWDDPECEIECPERLTAALDGLRQRGLEERCLCLSACEASEEELG 61
Query: 565 LVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYTCACLASGSVLRLVDAVLGAE 744
LVHS EYI L++ TQ +++ EL L+ Y++VY HP+++ CA LA+G+ L+LVDAVL
Sbjct: 62 LVHSPEYIALVQKTQTLDKEELHALSKQYNAVYFHPDTFHCARLAAGAALQLVDAVLTGA 121
Query: 745 IRNGMAIIR 771
+ NG+A++R
Sbjct: 122 VHNGLALVR 130
>ref|NP_001191210.1| histone deacetylase 7 isoform 8 [Mus musculus].
Length = 851
Score = 53.5 bits (127), Expect = 3e-07
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 21/153 (13%)
Frame = +1
Query: 376 ARTPSGTGLVLDEQLNEFHCLWDDS--FPEGPERLHAIKEQLMQEGLLDRCVSFQARFAE 549
+ TP+ TGLV D + + C D+ PE R+ +I +L + GL +C + R A
Sbjct: 415 SETPA-TGLVYDSVMLKHQCSCGDNSKHPEHAGRIQSIWSRLQERGLRSQCECLRGRKAS 473
Query: 550 KEELMLVHSLEYIDLMETTQY----MNEGELRVL---------------ADTYDSVYLHP 672
EEL VHS ++ L T ++ G+L L DT D+++
Sbjct: 474 LEELQSVHSERHVLLYGTNPLSRLKLDNGKLTGLLAQRTFVMLPCGGVGVDT-DTIWNEL 532
Query: 673 NSYTCACLASGSVLRLVDAVLGAEIRNGMAIIR 771
+S A A+GSV L V E++NG A++R
Sbjct: 533 HSSNAARWAAGSVTDLAFKVASRELKNGFAVVR 565
>ref|NP_001191208.1| histone deacetylase 7 isoform 6 [Mus musculus].
Length = 892
Score = 53.5 bits (127), Expect = 3e-07
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 21/153 (13%)
Frame = +1
Query: 376 ARTPSGTGLVLDEQLNEFHCLWDDS--FPEGPERLHAIKEQLMQEGLLDRCVSFQARFAE 549
+ TP+ TGLV D + + C D+ PE R+ +I +L + GL +C + R A
Sbjct: 456 SETPA-TGLVYDSVMLKHQCSCGDNSKHPEHAGRIQSIWSRLQERGLRSQCECLRGRKAS 514
Query: 550 KEELMLVHSLEYIDLMETTQY----MNEGELRVL---------------ADTYDSVYLHP 672
EEL VHS ++ L T ++ G+L L DT D+++
Sbjct: 515 LEELQSVHSERHVLLYGTNPLSRLKLDNGKLTGLLAQRTFVMLPCGGVGVDT-DTIWNEL 573
Query: 673 NSYTCACLASGSVLRLVDAVLGAEIRNGMAIIR 771
+S A A+GSV L V E++NG A++R
Sbjct: 574 HSSNAARWAAGSVTDLAFKVASRELKNGFAVVR 606
>ref|NP_001191207.1| histone deacetylase 7 isoform 5 [Mus musculus].
Length = 916
Score = 53.5 bits (127), Expect = 3e-07
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 21/153 (13%)
Frame = +1
Query: 376 ARTPSGTGLVLDEQLNEFHCLWDDS--FPEGPERLHAIKEQLMQEGLLDRCVSFQARFAE 549
+ TP+ TGLV D + + C D+ PE R+ +I +L + GL +C + R A
Sbjct: 480 SETPA-TGLVYDSVMLKHQCSCGDNSKHPEHAGRIQSIWSRLQERGLRSQCECLRGRKAS 538
Query: 550 KEELMLVHSLEYIDLMETTQY----MNEGELRVL---------------ADTYDSVYLHP 672
EEL VHS ++ L T ++ G+L L DT D+++
Sbjct: 539 LEELQSVHSERHVLLYGTNPLSRLKLDNGKLTGLLAQRTFVMLPCGGVGVDT-DTIWNEL 597
Query: 673 NSYTCACLASGSVLRLVDAVLGAEIRNGMAIIR 771
+S A A+GSV L V E++NG A++R
Sbjct: 598 HSSNAARWAAGSVTDLAFKVASRELKNGFAVVR 630
>ref|NP_001191206.1| histone deacetylase 7 isoform 3 [Mus musculus].
Length = 944
Score = 53.5 bits (127), Expect = 3e-07
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 21/153 (13%)
Frame = +1
Query: 376 ARTPSGTGLVLDEQLNEFHCLWDDS--FPEGPERLHAIKEQLMQEGLLDRCVSFQARFAE 549
+ TP+ TGLV D + + C D+ PE R+ +I +L + GL +C + R A
Sbjct: 508 SETPA-TGLVYDSVMLKHQCSCGDNSKHPEHAGRIQSIWSRLQERGLRSQCECLRGRKAS 566
Query: 550 KEELMLVHSLEYIDLMETTQY----MNEGELRVL---------------ADTYDSVYLHP 672
EEL VHS ++ L T ++ G+L L DT D+++
Sbjct: 567 LEELQSVHSERHVLLYGTNPLSRLKLDNGKLTGLLAQRTFVMLPCGGVGVDT-DTIWNEL 625
Query: 673 NSYTCACLASGSVLRLVDAVLGAEIRNGMAIIR 771
+S A A+GSV L V E++NG A++R
Sbjct: 626 HSSNAARWAAGSVTDLAFKVASRELKNGFAVVR 658
>ref|NP_001191205.1| histone deacetylase 7 isoform 2 [Mus musculus].
Length = 946
Score = 53.5 bits (127), Expect = 3e-07
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 21/153 (13%)
Frame = +1
Query: 376 ARTPSGTGLVLDEQLNEFHCLWDDS--FPEGPERLHAIKEQLMQEGLLDRCVSFQARFAE 549
+ TP+ TGLV D + + C D+ PE R+ +I +L + GL +C + R A
Sbjct: 510 SETPA-TGLVYDSVMLKHQCSCGDNSKHPEHAGRIQSIWSRLQERGLRSQCECLRGRKAS 568
Query: 550 KEELMLVHSLEYIDLMETTQY----MNEGELRVL---------------ADTYDSVYLHP 672
EEL VHS ++ L T ++ G+L L DT D+++
Sbjct: 569 LEELQSVHSERHVLLYGTNPLSRLKLDNGKLTGLLAQRTFVMLPCGGVGVDT-DTIWNEL 627
Query: 673 NSYTCACLASGSVLRLVDAVLGAEIRNGMAIIR 771
+S A A+GSV L V E++NG A++R
Sbjct: 628 HSSNAARWAAGSVTDLAFKVASRELKNGFAVVR 660
>ref|NP_001191204.1| histone deacetylase 7 isoform 1 [Mus musculus].
Length = 953
Score = 53.5 bits (127), Expect = 3e-07
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 21/153 (13%)
Frame = +1
Query: 376 ARTPSGTGLVLDEQLNEFHCLWDDS--FPEGPERLHAIKEQLMQEGLLDRCVSFQARFAE 549
+ TP+ TGLV D + + C D+ PE R+ +I +L + GL +C + R A
Sbjct: 517 SETPA-TGLVYDSVMLKHQCSCGDNSKHPEHAGRIQSIWSRLQERGLRSQCECLRGRKAS 575
Query: 550 KEELMLVHSLEYIDLMETTQY----MNEGELRVL---------------ADTYDSVYLHP 672
EEL VHS ++ L T ++ G+L L DT D+++
Sbjct: 576 LEELQSVHSERHVLLYGTNPLSRLKLDNGKLTGLLAQRTFVMLPCGGVGVDT-DTIWNEL 634
Query: 673 NSYTCACLASGSVLRLVDAVLGAEIRNGMAIIR 771
+S A A+GSV L V E++NG A++R
Sbjct: 635 HSSNAARWAAGSVTDLAFKVASRELKNGFAVVR 667
>ref|NP_062518.2| histone deacetylase 7 isoform 4 [Mus musculus].
Length = 938
Score = 53.5 bits (127), Expect = 3e-07
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 21/153 (13%)
Frame = +1
Query: 376 ARTPSGTGLVLDEQLNEFHCLWDDS--FPEGPERLHAIKEQLMQEGLLDRCVSFQARFAE 549
+ TP+ TGLV D + + C D+ PE R+ +I +L + GL +C + R A
Sbjct: 502 SETPA-TGLVYDSVMLKHQCSCGDNSKHPEHAGRIQSIWSRLQERGLRSQCECLRGRKAS 560
Query: 550 KEELMLVHSLEYIDLMETTQY----MNEGELRVL---------------ADTYDSVYLHP 672
EEL VHS ++ L T ++ G+L L DT D+++
Sbjct: 561 LEELQSVHSERHVLLYGTNPLSRLKLDNGKLTGLLAQRTFVMLPCGGVGVDT-DTIWNEL 619
Query: 673 NSYTCACLASGSVLRLVDAVLGAEIRNGMAIIR 771
+S A A+GSV L V E++NG A++R
Sbjct: 620 HSSNAARWAAGSVTDLAFKVASRELKNGFAVVR 652
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,347,100
Number of extensions: 828428
Number of successful extensions: 2225
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2216
Number of HSP's successfully gapped: 15
Length of query: 419
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 315
Effective length of database: 12,493,815
Effective search space: 3935551725
Effective search space used: 3935551725
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009359
(1258 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006035.2| histone deacetylase 6 [Homo sapiens]. 350 2e-96
Alignment gi|NP_114408.3| histone deacetylase 10 isoform 1 [Homo sapiens]. 114 2e-25
Alignment gi|NP_001152758.1| histone deacetylase 10 isoform 2 [Homo sapie... 114 2e-25
Alignment gi|NP_848512.1| histone deacetylase 9 isoform 5 [Homo sapiens]. 56 8e-08
Alignment gi|NP_478056.1| histone deacetylase 9 isoform 1 [Homo sapiens]. 56 8e-08
Alignment gi|NP_848510.1| histone deacetylase 9 isoform 4 [Homo sapiens]. 56 8e-08
Alignment gi|NP_001091886.1| histone deacetylase 7 isoform d [Homo sapien... 54 2e-07
Alignment gi|NP_056216.2| histone deacetylase 7 isoform a [Homo sapiens]. 54 2e-07
Alignment gi|NP_006028.2| histone deacetylase 4 [Homo sapiens]. 51 2e-06
Alignment gi|NP_001015053.1| histone deacetylase 5 isoform 3 [Homo sapien... 51 2e-06
>ref|NP_006035.2| histone deacetylase 6 [Homo sapiens].
Length = 1215
Score = 350 bits (897), Expect = 2e-96
Identities = 174/193 (90%), Positives = 182/193 (94%)
Frame = +1
Query: 193 NPHSPPHDSSVTSKRGVKKGAGLRSSPNLADVKKKGRMKKLSQAAEQDLIVGLQGLDLNL 372
NP SPP DSSVTSKR +KKGA RS PNLA+VKKKG+MKKL QA E+DLIVGLQG+DLNL
Sbjct: 19 NPQSPPQDSSVTSKRNIKKGAVPRSIPNLAEVKKKGKMKKLGQAMEEDLIVGLQGMDLNL 78
Query: 373 EARTPSGTGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLMQEGLLDRCVSFQARFAEK 552
EA +GTGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQL+QEGLLDRCVSFQARFAEK
Sbjct: 79 EAEALAGTGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLIQEGLLDRCVSFQARFAEK 138
Query: 553 EELMLVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYTCACLASGSVLRLVDAV 732
EELMLVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSY+CACLASGSVLRLVDAV
Sbjct: 139 EELMLVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYSCACLASGSVLRLVDAV 198
Query: 733 LGAEIRNGMAIIR 771
LGAEIRNGMAIIR
Sbjct: 199 LGAEIRNGMAIIR 211
Score = 100 bits (250), Expect = 2e-21
Identities = 51/128 (39%), Positives = 77/128 (60%)
Frame = +1
Query: 388 SGTGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELML 567
S TGLV D+ + LWD PE P+R+ I +L + GL RC++ R A + EL+
Sbjct: 479 SRTGLVYDQNMMNHCNLWDSHHPEVPQRILRIMCRLEELGLAGRCLTLTPRPATEAELLT 538
Query: 568 VHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYTCACLASGSVLRLVDAVLGAEI 747
HS EY+ + T+ M EL + +DS+Y+ P+++ CA LA+G+ RLV+AVL E+
Sbjct: 539 CHSAEYVGHLRATEKMKTRELHRESSNFDSIYICPSTFACAQLATGAACRLVEAVLSGEV 598
Query: 748 RNGMAIIR 771
NG A++R
Sbjct: 599 LNGAAVVR 606
>ref|NP_114408.3| histone deacetylase 10 isoform 1 [Homo sapiens].
Length = 669
Score = 114 bits (284), Expect = 2e-25
Identities = 59/129 (45%), Positives = 84/129 (65%), Gaps = 2/129 (1%)
Frame = +1
Query: 391 GTGLVLDEQLNEFHCLWDDSFPE--GPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELM 564
GT LV E + LWDD E PERL A ++L Q GL RC+ AR A +EEL
Sbjct: 2 GTALVYHEDMTATRLLWDDPECEIERPERLTAALDRLRQRGLEQRCLRLSAREASEEELG 61
Query: 565 LVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYTCACLASGSVLRLVDAVLGAE 744
LVHS EY+ L+ TQ + + EL+ L+ +D++Y HP+++ CA LA+G+ L+LVDAVL
Sbjct: 62 LVHSPEYVSLVRETQVLGKEELQALSGQFDAIYFHPSTFHCARLAAGAGLQLVDAVLTGA 121
Query: 745 IRNGMAIIR 771
++NG+A++R
Sbjct: 122 VQNGLALVR 130
>ref|NP_001152758.1| histone deacetylase 10 isoform 2 [Homo sapiens].
Length = 649
Score = 114 bits (284), Expect = 2e-25
Identities = 59/129 (45%), Positives = 84/129 (65%), Gaps = 2/129 (1%)
Frame = +1
Query: 391 GTGLVLDEQLNEFHCLWDDSFPE--GPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELM 564
GT LV E + LWDD E PERL A ++L Q GL RC+ AR A +EEL
Sbjct: 2 GTALVYHEDMTATRLLWDDPECEIERPERLTAALDRLRQRGLEQRCLRLSAREASEEELG 61
Query: 565 LVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYTCACLASGSVLRLVDAVLGAE 744
LVHS EY+ L+ TQ + + EL+ L+ +D++Y HP+++ CA LA+G+ L+LVDAVL
Sbjct: 62 LVHSPEYVSLVRETQVLGKEELQALSGQFDAIYFHPSTFHCARLAAGAGLQLVDAVLTGA 121
Query: 745 IRNGMAIIR 771
++NG+A++R
Sbjct: 122 VQNGLALVR 130
>ref|NP_848512.1| histone deacetylase 9 isoform 5 [Homo sapiens].
Length = 1069
Score = 55.8 bits (133), Expect = 8e-08
Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Frame = +1
Query: 388 SGTGLVLDEQLNEFHCLWDDS--FPEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEEL 561
S TG+ D + + C+ +S PE R+ +I +L + GLL++C Q R A EE+
Sbjct: 634 SATGIAYDPLMLKHQCVCGNSTTHPEHAGRIQSIWSRLQETGLLNKCERIQGRKASLEEI 693
Query: 562 MLVHSLEYIDLMETTQYMNEGEL--RVLAD-----------------TYDSVYLHPNSYT 684
LVHS E+ L+ T ++ +L R+L D+++ +S
Sbjct: 694 QLVHS-EHHSLLYGTNPLDGQKLDPRILLGDDSQKFFSSLPCGGLGVDSDTIWNELHSSG 752
Query: 685 CACLASGSVLRLVDAVLGAEIRNGMAIIR 771
A +A G V+ L V E++NG A++R
Sbjct: 753 AARMAVGCVIELASKVASGELKNGFAVVR 781
>ref|NP_478056.1| histone deacetylase 9 isoform 1 [Homo sapiens].
Length = 1011
Score = 55.8 bits (133), Expect = 8e-08
Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Frame = +1
Query: 388 SGTGLVLDEQLNEFHCLWDDS--FPEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEEL 561
S TG+ D + + C+ +S PE R+ +I +L + GLL++C Q R A EE+
Sbjct: 631 SATGIAYDPLMLKHQCVCGNSTTHPEHAGRIQSIWSRLQETGLLNKCERIQGRKASLEEI 690
Query: 562 MLVHSLEYIDLMETTQYMNEGEL--RVLAD-----------------TYDSVYLHPNSYT 684
LVHS E+ L+ T ++ +L R+L D+++ +S
Sbjct: 691 QLVHS-EHHSLLYGTNPLDGQKLDPRILLGDDSQKFFSSLPCGGLGVDSDTIWNELHSSG 749
Query: 685 CACLASGSVLRLVDAVLGAEIRNGMAIIR 771
A +A G V+ L V E++NG A++R
Sbjct: 750 AARMAVGCVIELASKVASGELKNGFAVVR 778
>ref|NP_848510.1| histone deacetylase 9 isoform 4 [Homo sapiens].
Length = 1066
Score = 55.8 bits (133), Expect = 8e-08
Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Frame = +1
Query: 388 SGTGLVLDEQLNEFHCLWDDS--FPEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEEL 561
S TG+ D + + C+ +S PE R+ +I +L + GLL++C Q R A EE+
Sbjct: 631 SATGIAYDPLMLKHQCVCGNSTTHPEHAGRIQSIWSRLQETGLLNKCERIQGRKASLEEI 690
Query: 562 MLVHSLEYIDLMETTQYMNEGEL--RVLAD-----------------TYDSVYLHPNSYT 684
LVHS E+ L+ T ++ +L R+L D+++ +S
Sbjct: 691 QLVHS-EHHSLLYGTNPLDGQKLDPRILLGDDSQKFFSSLPCGGLGVDSDTIWNELHSSG 749
Query: 685 CACLASGSVLRLVDAVLGAEIRNGMAIIR 771
A +A G V+ L V E++NG A++R
Sbjct: 750 AARMAVGCVIELASKVASGELKNGFAVVR 778
>ref|NP_001091886.1| histone deacetylase 7 isoform d [Homo sapiens].
Length = 954
Score = 54.3 bits (129), Expect = 2e-07
Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 22/154 (14%)
Frame = +1
Query: 376 ART-PSGTGLVLDEQLNEFHCLWDDS--FPEGPERLHAIKEQLMQEGLLDRCVSFQARFA 546
ART P TGL+ D + + C D+ PE R+ +I +L + GL +C + R A
Sbjct: 515 ARTLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKA 574
Query: 547 EKEELMLVHSLEYIDLMETTQY----MNEGELRVL---------------ADTYDSVYLH 669
EEL VHS ++ L T ++ G+L L DT D+++
Sbjct: 575 SLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDT-DTIWNE 633
Query: 670 PNSYTCACLASGSVLRLVDAVLGAEIRNGMAIIR 771
+S A A+GSV L V E++NG A++R
Sbjct: 634 LHSSNAARWAAGSVTDLAFKVASRELKNGFAVVR 667
>ref|NP_056216.2| histone deacetylase 7 isoform a [Homo sapiens].
Length = 991
Score = 54.3 bits (129), Expect = 2e-07
Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 22/154 (14%)
Frame = +1
Query: 376 ART-PSGTGLVLDEQLNEFHCLWDDS--FPEGPERLHAIKEQLMQEGLLDRCVSFQARFA 546
ART P TGL+ D + + C D+ PE R+ +I +L + GL +C + R A
Sbjct: 552 ARTLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKA 611
Query: 547 EKEELMLVHSLEYIDLMETTQY----MNEGELRVL---------------ADTYDSVYLH 669
EEL VHS ++ L T ++ G+L L DT D+++
Sbjct: 612 SLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDT-DTIWNE 670
Query: 670 PNSYTCACLASGSVLRLVDAVLGAEIRNGMAIIR 771
+S A A+GSV L V E++NG A++R
Sbjct: 671 LHSSNAARWAAGSVTDLAFKVASRELKNGFAVVR 704
>ref|NP_006028.2| histone deacetylase 4 [Homo sapiens].
Length = 1084
Score = 51.2 bits (121), Expect = 2e-06
Identities = 45/146 (30%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Frame = +1
Query: 394 TGLVLDEQLNEFHCLW--DDSFPEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELML 567
TGLV D + + C S PE R+ +I +L + GL +C + R A EEL
Sbjct: 654 TGLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQT 713
Query: 568 VHSLEYIDLMETTQYMNEGE------LRVLADTY------------DSVYLHPNSYTCAC 693
VHS E L+ T +N + L LA + D+++ +S A
Sbjct: 714 VHS-EAHTLLYGTNPLNRQKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAAR 772
Query: 694 LASGSVLRLVDAVLGAEIRNGMAIIR 771
LA G V+ LV V E++NG A++R
Sbjct: 773 LAVGCVVELVFKVATGELKNGFAVVR 798
>ref|NP_001015053.1| histone deacetylase 5 isoform 3 [Homo sapiens].
Length = 1123
Score = 51.2 bits (121), Expect = 2e-06
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Frame = +1
Query: 394 TGLVLDEQLNEFHCLWDDSF--PEGPERLHAIKEQLMQEGLLDRCVSFQARFAEKEELML 567
TG+V D + + C+ ++ PE R+ +I +L + GLL +C + R A +E+
Sbjct: 684 TGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQT 743
Query: 568 VHSLEYIDLMETTQYMNEGELRV-------------------LADTYDSVYLHPNSYTCA 690
VHS EY L+ T +N +L + D+V+ +S +
Sbjct: 744 VHS-EYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAVLPCGGIGVDSDTVWNEMHSSSAV 802
Query: 691 CLASGSVLRLVDAVLGAEIRNGMAIIR 771
+A G +L L V E++NG AIIR
Sbjct: 803 RMAVGCLLELAFKVAAGELKNGFAIIR 829
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,209,150
Number of extensions: 979843
Number of successful extensions: 2648
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2638
Number of HSP's successfully gapped: 12
Length of query: 419
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 314
Effective length of database: 14,835,944
Effective search space: 4658486416
Effective search space used: 4658486416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009359
(1258 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 355 4e-95
>Sscrofa_ChrX
|| Length = 144288218
Score = 355 bits (179), Expect = 4e-95
Identities = 199/209 (95%)
Strand = Plus / Plus
Query: 672 gaactcatacacctgtgcctgcctggcctcaggctccgtcctcaggctggtggatgccgt 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47864195 gaactcatacacctgtgcctgcctggcctcaggctccgtcctcaggctggtggatgccgt 47864254
Query: 732 cctgggggctgagatccggaatggcatggccatcatcaggtaggacctgctggcctttgg 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47864255 cctgggggctgagatccggaatggcatggccatcatcaggtaggacctgctggcctttgg 47864314
Query: 792 ctttttatgttnnnnnnnnnntcctttctcaaatataaaaggtaatggtaggggtagtat 851
||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 47864315 ctttttatgttaaaaaaaaaatcctttctcaaatataaaaggtaatggtaggggtagtat 47864374
Query: 852 gtttccacggttcaagaatcaaatggtta 880
|||||||||||||||||||||||||||||
Sbjct: 47864375 gtttccacggttcaagaatcaaatggtta 47864403
Score = 260 bits (131), Expect = 2e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 231 gaagcgaggtgttaaaaagggtgccggactccgctccagccccaatctagcggatgtaaa 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47860407 gaagcgaggtgttaaaaagggtgccggactccgctccagccccaatctagcggatgtaaa 47860466
Query: 291 gaagaaaggcagaatgaagaagcttagccaagcagccgagcaagacctaatcgtggggct 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47860467 gaagaaaggcagaatgaagaagcttagccaagcagccgagcaagacctaatcgtggggct 47860526
Query: 351 ccaagggctgg 361
|||||||||||
Sbjct: 47860527 ccaagggctgg 47860537
Score = 214 bits (108), Expect = 9e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 aagccagggggcagggagaagacgccctttcctaactccctcgcttgcttgcttgcactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47859023 aagccagggggcagggagaagacgccctttcctaactccctcgcttgcttgcttgcactc 47859082
Query: 61 ttgagtcaccgcacggtacagttggcgcgagtccggtgggctcctaag 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47859083 ttgagtcaccgcacggtacagttggcgcgagtccggtgggctcctaag 47859130
Score = 206 bits (104), Expect = 2e-50
Identities = 118/125 (94%)
Strand = Plus / Plus
Query: 107 agaaccgcgtcaggggtgaagtctccccagccatgacctccaccggccaggattccacca 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47860199 agaaccgcgtcaggggtgaagtctccccagccatgacctccaccggccaggattccacca 47860258
Query: 167 caaccaggcagcgaagaagtaggcacaacccccactnnnnnnnacacgactccagcgtca 226
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 47860259 caaccaggcagcgaagaagtaggcacaacccccactcccccccacacgactccagcgtca 47860318
Query: 227 cctcg 231
|||||
Sbjct: 47860319 cctcg 47860323
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 573 cagcctagagtacattgatctgatggagacgacccagtacatgaatgagggggagctccg 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47863961 cagcctagagtacattgatctgatggagacgacccagtacatgaatgagggggagctccg 47864020
Query: 633 cgtcctagcagacacctatgattcggtttatctgcatccg 672
||||||||||||||||||||||||||||||||||||||||
Sbjct: 47864021 cgtcctagcagacacctatgattcggtttatctgcatccg 47864060
Score = 178 bits (90), Expect = 5e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 360 ggatctgaacctggaggccaggacaccgtctggcactggcttggtgttggatgagcagct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47860675 ggatctgaacctggaggccaggacaccgtctggcactggcttggtgttggatgagcagct 47860734
Query: 420 aaatgaattccactgcctctgggatgacag 449
||||||||||||||||||||||||||||||
Sbjct: 47860735 aaatgaattccactgcctctgggatgacag 47860764
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 447 cagcttccctgaaggccctgagcggctccatgccatcaaggagcagctgatgcaggaggg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47862608 cagcttccctgaaggccctgagcggctccatgccatcaaggagcagctgatgcaggaggg 47862667
Query: 507 cctcctggaccgctgcgtgtcctttcagg 535
|||||||||||||||||||||||||||||
Sbjct: 47862668 cctcctggaccgctgcgtgtcctttcagg 47862696
Score = 105 bits (53), Expect = 6e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 1131 tggaacattctaaaaggttgagggggaaggtacaagttaaagtcctctccacg 1183
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47864654 tggaacattctaaaaggttgagggggaaggtacaagttaaagtcctctccacg 47864706
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 532 caggcccgattcgccgaaaaggaggagcttatgttggttcacag 575
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Sbjct: 47862791 caggcccgattcgccgaaaaggaggagcttatgttggttcacag 47862834
Score = 65.9 bits (33), Expect = 5e-08
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 1214 ggcttcctctcccgggagtagtcactgtataaccagtgactcatg 1258
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Sbjct: 47864737 ggcttcctctcctggaggtagtcactgtataaccagtgactcatg 47864781
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,524,617
Number of extensions: 148
Number of successful extensions: 148
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 11
Length of query: 1258
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1237
Effective length of database: 2,808,413,156
Effective search space: 3474007073972
Effective search space used: 3474007073972
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)