Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009370
(1008 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777170.1| 72 kDa type IV collagenase precursor [Bos tauru... 426 e-119
Alignment gi|NP_776537.1| interstitial collagenase precursor [Bos taurus]. 160 2e-39
Alignment gi|NP_001193566.1| stromelysin-1 [Bos taurus]. 156 3e-38
Alignment gi|XP_002692352.1| PREDICTED: matrix metallopeptidase 24 (membr... 150 1e-36
Alignment gi|XP_616761.4| PREDICTED: matrix metallopeptidase 24 (membrane... 150 1e-36
Alignment gi|NP_001179551.1| matrix metalloproteinase-16 [Bos taurus]. 148 6e-36
Alignment gi|XP_002692871.1| PREDICTED: matrix metallopeptidase 16 (membr... 148 6e-36
Alignment gi|XP_002694502.1| PREDICTED: MMP17 protein-like [Bos taurus]. 147 1e-35
Alignment gi|XP_590696.3| PREDICTED: matrix metalloproteinase 17 [Bos tau... 147 1e-35
Alignment gi|NP_001178363.1| matrix metallopeptidase 15 (membrane-inserte... 144 2e-34
>ref|NP_777170.1| 72 kDa type IV collagenase precursor [Bos taurus].
Length = 661
Score = 426 bits (1094), Expect = e-119
Identities = 201/207 (97%), Positives = 202/207 (97%)
Frame = +1
Query: 1 GHRPTPTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFW 180
G PTPTLGPVTPE+CKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKP GPLLVATFW
Sbjct: 455 GTGPTPTLGPVTPELCKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPTGPLLVATFW 514
Query: 181 PELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFN 360
PELPEKIDAVYE PQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPP VQKVDAAFN
Sbjct: 515 PELPEKIDAVYEDPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPGVQKVDAAFN 574
Query: 361 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFK 540
WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFK
Sbjct: 575 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFK 634
Query: 541 GAYYLKLENQSLKSVKFGSIKSDWLGC 621
GAYYLKLENQSLKSVKFGSIKSDWLGC
Sbjct: 635 GAYYLKLENQSLKSVKFGSIKSDWLGC 661
>ref|NP_776537.1| interstitial collagenase precursor [Bos taurus].
Length = 469
Score = 160 bits (405), Expect = 2e-39
Identities = 82/205 (40%), Positives = 114/205 (55%), Gaps = 1/205 (0%)
Frame = +1
Query: 10 PTPTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPEL 189
PT +GP TPE+C + FD I+ IRGE+ FFKDRF RT P + ++ FWP+L
Sbjct: 266 PTQPVGPQTPEVCDSKLTFDAITTIRGEVMFFKDRFYMRT-NPLYPEVELNFISVFWPQL 324
Query: 190 PEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPL-TSLGLPPDVQKVDAAFNWS 366
P + A YE ++ FF GN+YW + RGYP+ + S G P V+ +DAA +
Sbjct: 325 PNGLQAAYEVADRDEVRFFKGNKYWAVKGQDVLRGYPRDIYRSFGFPRTVKSIDAAVSEE 384
Query: 367 KNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGA 546
KTY F +K WRY+E K+ MD G+PK+IA+ + I + +DAV Q GG YFF G
Sbjct: 385 DTGKTYFFVANKCWRYDEYKQSMDAGYPKMIAEDFPGIGNKVDAV--FQKGGFFYFFHGR 442
Query: 547 YYLKLENQSLKSVKFGSIKSDWLGC 621
K + Q+ + + S W C
Sbjct: 443 RQYKFDPQTKRILTLLKANS-WFNC 466
>ref|NP_001193566.1| stromelysin-1 [Bos taurus].
Length = 477
Score = 156 bits (394), Expect = 3e-38
Identities = 76/198 (38%), Positives = 114/198 (57%)
Frame = +1
Query: 28 PVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDA 207
P TP C + FD +S +RGEI FFK R WR +P L +++FWP LP IDA
Sbjct: 284 PGTPAACDPALSFDAVSTLRGEILFFKGRHFWRKSFRTFEPEFHL-ISSFWPSLPSGIDA 342
Query: 208 VYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYI 387
YE ++ F GN++W + ++ GYP+ + +LG P V+K+DAAF+ + KKTY
Sbjct: 343 AYEVTSKDTVFIFKGNQFWAIRGNEMQAGYPRGIHTLGFPSTVRKIDAAFSDKEKKKTYF 402
Query: 388 FAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLEN 567
FA DK+WR++E ++ M+PGFPK I + + + +DAV ++ G YFF G+ + +
Sbjct: 403 FAEDKYWRFDEKRQSMEPGFPKQIVEDFPGVESEVDAVFEV--FGFYYFFSGSSQFEFD- 459
Query: 568 QSLKSVKFGSIKSDWLGC 621
+ K V + WL C
Sbjct: 460 PNAKKVTHVLKSNSWLNC 477
>ref|XP_002692352.1| PREDICTED: matrix metallopeptidase 24 (membrane-inserted) [Bos
taurus].
Length = 596
Score = 150 bits (380), Expect = 1e-36
Identities = 86/213 (40%), Positives = 118/213 (55%), Gaps = 9/213 (4%)
Frame = +1
Query: 10 PTPTLG--PVTP----EICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVA 171
P P LG P TP IC D F+ ++ RGE+F FKDR+ WR R + P+ +
Sbjct: 313 PRPPLGDRPATPGAKPNIC--DGNFNTVALFRGEMFVFKDRWFWRLRNNRVQEGYPMQIE 370
Query: 172 TFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDA 351
FW LP +IDA YE + + VFF G++YWV+ T+E GYP L LG + +D
Sbjct: 371 QFWKGLPARIDAAYERA-DGRFVFFKGDKYWVFKEVTVEPGYPHSLGELGSCLPREGIDT 429
Query: 352 AFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSY 531
A W KTY F G+++WRY+E ++ DPG+PK I W IP + G ++Y
Sbjct: 430 ALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPIT-VWKGIPQAPQGAFISKEGYYTY 488
Query: 532 FFKGAYYLKLENQSLKSVKFG---SIKSDWLGC 621
F+KG Y K +NQ L SV+ G +I DW+GC
Sbjct: 489 FYKGRDYWKFDNQKL-SVEPGYPRNILRDWMGC 520
>ref|XP_616761.4| PREDICTED: matrix metallopeptidase 24 (membrane-inserted) [Bos
taurus].
Length = 568
Score = 150 bits (380), Expect = 1e-36
Identities = 86/213 (40%), Positives = 118/213 (55%), Gaps = 9/213 (4%)
Frame = +1
Query: 10 PTPTLG--PVTP----EICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVA 171
P P LG P TP IC D F+ ++ RGE+F FKDR+ WR R + P+ +
Sbjct: 285 PRPPLGDRPATPGAKPNIC--DGNFNTVALFRGEMFVFKDRWFWRLRNNRVQEGYPMQIE 342
Query: 172 TFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDA 351
FW LP +IDA YE + + VFF G++YWV+ T+E GYP L LG + +D
Sbjct: 343 QFWKGLPARIDAAYERA-DGRFVFFKGDKYWVFKEVTVEPGYPHSLGELGSCLPREGIDT 401
Query: 352 AFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSY 531
A W KTY F G+++WRY+E ++ DPG+PK I W IP + G ++Y
Sbjct: 402 ALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPIT-VWKGIPQAPQGAFISKEGYYTY 460
Query: 532 FFKGAYYLKLENQSLKSVKFG---SIKSDWLGC 621
F+KG Y K +NQ L SV+ G +I DW+GC
Sbjct: 461 FYKGRDYWKFDNQKL-SVEPGYPRNILRDWMGC 492
>ref|NP_001179551.1| matrix metalloproteinase-16 [Bos taurus].
Length = 607
Score = 148 bits (374), Expect = 6e-36
Identities = 84/205 (40%), Positives = 114/205 (55%), Gaps = 3/205 (1%)
Frame = +1
Query: 16 PTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPE 195
P+ P IC D F+ ++ +R E+F FKD++ WR R P+ + FW LP
Sbjct: 333 PSYPGAKPNIC--DGNFNTLAILRREMFVFKDQWFWRVRNHRVMDGYPMQITYFWRGLPP 390
Query: 196 KIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNK 375
IDAVYE + VFF GN+YWV+ +TL+ GYP L +LG +D+A W
Sbjct: 391 SIDAVYEN-SDGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGSGIPPHGIDSAIWWEDVG 449
Query: 376 KTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYL 555
KTY F GD++WRY+E K MDPG+PK I W IP++ + G +YF+KG Y
Sbjct: 450 KTYFFKGDRYWRYSEEMKTMDPGYPKPIT-VWKGIPESPQGAFVHKENGFTYFYKGKEYW 508
Query: 556 KLENQSLKSVKFG---SIKSDWLGC 621
K NQ LK V+ G SI D++GC
Sbjct: 509 KFNNQILK-VEPGYPRSILKDFMGC 532
>ref|XP_002692871.1| PREDICTED: matrix metallopeptidase 16 (membrane-inserted) [Bos
taurus].
Length = 607
Score = 148 bits (374), Expect = 6e-36
Identities = 84/205 (40%), Positives = 114/205 (55%), Gaps = 3/205 (1%)
Frame = +1
Query: 16 PTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPE 195
P+ P IC D F+ ++ +R E+F FKD++ WR R P+ + FW LP
Sbjct: 333 PSYPGAKPNIC--DGNFNTLAILRREMFVFKDQWFWRVRNHRVMDGYPMQITYFWRGLPP 390
Query: 196 KIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNK 375
IDAVYE + VFF GN+YWV+ +TL+ GYP L +LG +D+A W
Sbjct: 391 SIDAVYEN-SDGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGSGIPPHGIDSAIWWEDVG 449
Query: 376 KTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYL 555
KTY F GD++WRY+E K MDPG+PK I W IP++ + G +YF+KG Y
Sbjct: 450 KTYFFKGDRYWRYSEEMKTMDPGYPKPIT-VWKGIPESPQGAFVHKENGFTYFYKGKEYW 508
Query: 556 KLENQSLKSVKFG---SIKSDWLGC 621
K NQ LK V+ G SI D++GC
Sbjct: 509 KFNNQILK-VEPGYPRSILKDFMGC 532
>ref|XP_002694502.1| PREDICTED: MMP17 protein-like [Bos taurus].
Length = 591
Score = 147 bits (371), Expect = 1e-35
Identities = 78/192 (40%), Positives = 107/192 (55%), Gaps = 6/192 (3%)
Frame = +1
Query: 64 FDGISQIRGEIFFFKDRFIWRTVTPRDK-PMGPLLVATFWPELP---EKIDAVYEAPQEE 231
FD ++QIRGE FFFK ++ WR R + P V FW LP + +DAVYE +
Sbjct: 336 FDAVAQIRGEAFFFKGKYFWRLTRDRHLVSLQPAQVHRFWRGLPLHLDSVDAVYERTSDH 395
Query: 232 KAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWR 411
K VFF G+ YWV+ + +E GYP+P++ GLP VDAAF+W+ N KTY F +WR
Sbjct: 396 KIVFFKGDRYWVFKDNNVEEGYPRPVSDFGLPSG--GVDAAFSWAHNDKTYFFKDQLYWR 453
Query: 412 YNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKF 591
Y+E ++MDPG P + W +P LD + G +YFF+G Y K+ + L+
Sbjct: 454 YDEHTRRMDPGHPAQ-SPPWRGVPSTLDDAMRWSDGA-AYFFRGKEYWKVLDGELEVAPG 511
Query: 592 --GSIKSDWLGC 621
S DWL C
Sbjct: 512 YPQSTARDWLVC 523
>ref|XP_590696.3| PREDICTED: matrix metalloproteinase 17 [Bos taurus].
Length = 591
Score = 147 bits (371), Expect = 1e-35
Identities = 78/192 (40%), Positives = 107/192 (55%), Gaps = 6/192 (3%)
Frame = +1
Query: 64 FDGISQIRGEIFFFKDRFIWRTVTPRDK-PMGPLLVATFWPELP---EKIDAVYEAPQEE 231
FD ++QIRGE FFFK ++ WR R + P V FW LP + +DAVYE +
Sbjct: 336 FDAVAQIRGEAFFFKGKYFWRLTRDRHLVSLQPAQVHRFWRGLPLHLDSVDAVYERTSDH 395
Query: 232 KAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWR 411
K VFF G+ YWV+ + +E GYP+P++ GLP VDAAF+W+ N KTY F +WR
Sbjct: 396 KIVFFKGDRYWVFKDNNVEEGYPRPVSDFGLPSG--GVDAAFSWAHNDKTYFFKDQLYWR 453
Query: 412 YNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKF 591
Y+E ++MDPG P + W +P LD + G +YFF+G Y K+ + L+
Sbjct: 454 YDEHTRRMDPGHPAQ-SPPWRGVPSTLDDAMRWSDGA-AYFFRGKEYWKVLDGELEVAPG 511
Query: 592 --GSIKSDWLGC 621
S DWL C
Sbjct: 512 YPQSTARDWLVC 523
>ref|NP_001178363.1| matrix metallopeptidase 15 (membrane-inserted) [Bos taurus].
Length = 675
Score = 144 bits (362), Expect = 2e-34
Identities = 75/197 (38%), Positives = 108/197 (54%), Gaps = 2/197 (1%)
Frame = +1
Query: 37 PEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYE 216
P IC D FD ++ +RGE+F FK R+ WR R P+ + FW LP I A YE
Sbjct: 367 PNICDGD--FDTVAMLRGEMFVFKGRWFWRVRHNRVLDNYPMPIGHFWRGLPSDISAAYE 424
Query: 217 APQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAG 396
Q+ + VFF G+ YW++ + LE GYP+PLTS GL ++D A W T+ F
Sbjct: 425 R-QDGRFVFFKGDRYWLFREANLEPGYPQPLTSYGLGIPYDRIDTAIWWEPTGHTFFFQE 483
Query: 397 DKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSL 576
D++WR+NE ++ DPG+PK I+ W IP + ++YF+KG Y K +N+ L
Sbjct: 484 DRYWRFNEETQRGDPGYPKPIS-VWQGIPASPKGAFLSNDAAYTYFYKGTKYWKFDNERL 542
Query: 577 KSVKF--GSIKSDWLGC 621
+ SI D++GC
Sbjct: 543 RMEPGYPKSILRDFMGC 559
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,685,623
Number of extensions: 1390013
Number of successful extensions: 5399
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 5261
Number of HSP's successfully gapped: 28
Length of query: 336
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,273,310
Effective search space: 3325681230
Effective search space used: 3325681230
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009370
(1008 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535300.2| PREDICTED: similar to matrix metalloproteinase ... 428 e-120
Alignment gi|NP_001002967.1| stromelysin-1 precursor [Canis lupus familia... 164 1e-40
Alignment gi|XP_852332.1| PREDICTED: similar to matrix metalloproteinase ... 150 2e-36
Alignment gi|XP_542973.2| PREDICTED: similar to Matrix metalloproteinase-... 150 2e-36
Alignment gi|XP_544165.2| PREDICTED: similar to matrix metalloproteinase ... 148 7e-36
Alignment gi|XP_546546.2| PREDICTED: similar to Interstitial collagenase ... 147 1e-35
Alignment gi|XP_544383.2| PREDICTED: similar to matrix metalloproteinase ... 144 1e-34
Alignment gi|XP_856947.1| PREDICTED: similar to matrix metalloproteinase ... 141 1e-33
Alignment gi|XP_546547.2| PREDICTED: similar to Neutrophil collagenase pr... 141 1e-33
Alignment gi|XP_536598.2| PREDICTED: similar to Collagenase 3 precursor (... 139 4e-33
>ref|XP_535300.2| PREDICTED: similar to matrix metalloproteinase 2 preproprotein [Canis
familiaris].
Length = 612
Score = 428 bits (1101), Expect = e-120
Identities = 202/207 (97%), Positives = 204/207 (98%)
Frame = +1
Query: 1 GHRPTPTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFW 180
G PTPTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPR+KPMGPLLVATFW
Sbjct: 406 GTGPTPTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRNKPMGPLLVATFW 465
Query: 181 PELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFN 360
PELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQ+VDAAFN
Sbjct: 466 PELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQRVDAAFN 525
Query: 361 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFK 540
WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQG GHSYFFK
Sbjct: 526 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGSGHSYFFK 585
Query: 541 GAYYLKLENQSLKSVKFGSIKSDWLGC 621
GAYYLKLENQSLKSVKFGSIKSDWLGC
Sbjct: 586 GAYYLKLENQSLKSVKFGSIKSDWLGC 612
>ref|NP_001002967.1| stromelysin-1 precursor [Canis lupus familiaris].
Length = 478
Score = 164 bits (415), Expect = 1e-40
Identities = 80/199 (40%), Positives = 115/199 (57%)
Frame = +1
Query: 25 GPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKID 204
GP TP C + FD IS +RGE FFKDR WR +P G L+++FWP LP +D
Sbjct: 284 GPGTPAACDPTLSFDAISTLRGEFLFFKDRHFWRKSLRTLEP-GFYLISSFWPSLPSGLD 342
Query: 205 AVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTY 384
A YE ++ F GN++W + ++ GYPK + +LG PP V+K+DAA + KKTY
Sbjct: 343 AAYEETSKDIVFIFKGNQFWAMRGTEVQAGYPKGIHTLGFPPTVKKIDAAVFDKEKKKTY 402
Query: 385 IFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLE 564
F GDK+WR++E ++ M+PGFPK IA+ + + +DA + G YFF G+ L+ +
Sbjct: 403 FFVGDKYWRFDEKRQSMEPGFPKQIAEDFPGVDSKVDAA--FEAFGFYYFFNGSSQLEFD 460
Query: 565 NQSLKSVKFGSIKSDWLGC 621
+ K V + WL C
Sbjct: 461 -PNAKKVTHVLKSNSWLNC 478
>ref|XP_852332.1| PREDICTED: similar to matrix metalloproteinase 17 preproprotein
[Canis familiaris].
Length = 661
Score = 150 bits (379), Expect = 2e-36
Identities = 88/230 (38%), Positives = 119/230 (51%), Gaps = 8/230 (3%)
Frame = +1
Query: 37 PEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDK---PMGPLLVATFWPELP---EK 198
P C D FD ++QIRGE FFFK ++ WR RD + P + FW LP +
Sbjct: 395 PHRCSTD--FDAVAQIRGEAFFFKGKYFWRLT--RDGHLVSLQPAQMHRFWRGLPLQLDS 450
Query: 199 IDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKK 378
+DAVYE + K VFF G+ YWV+ + +E GYP+P++ GLPP VDAAF+WS N K
Sbjct: 451 VDAVYERTSDHKIVFFKGDRYWVFKDNNVEEGYPRPVSDFGLPPG--GVDAAFSWSHNDK 508
Query: 379 TYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLK 558
TY F +WR++E ++MDPG P + W IP LD + G +YFF+G Y K
Sbjct: 509 TYFFKDQLYWRFDEHTRRMDPGHPAR-SPPWRGIPSTLDDAM-CWSDGAAYFFRGKEYWK 566
Query: 559 LENQSLKSVKF--GSIKSDWLGC*AGSTSPRACLSIAFCTPGPGCQGRTR 702
+ + L+ S DWL C P A PG ++R
Sbjct: 567 VLDSELEVAPGYPQSTARDWLVCRDLQADPEGAGGEAGAHARPGQHSQSR 616
>ref|XP_542973.2| PREDICTED: similar to Matrix metalloproteinase-24 precursor
(MMP-24) (Membrane-type matrix metalloproteinase 5)
(MT-MMP 5) (Membrane-type-5 matrix metalloproteinase)
(MT5-MMP) [Canis familiaris].
Length = 626
Score = 150 bits (378), Expect = 2e-36
Identities = 86/213 (40%), Positives = 118/213 (55%), Gaps = 9/213 (4%)
Frame = +1
Query: 10 PTPTLG--PVTP----EICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVA 171
P P LG P TP IC D F+ ++ RGE+F FKDR+ WR R + P+ +
Sbjct: 343 PRPPLGDRPSTPGAKPNIC--DGNFNTVALFRGEMFVFKDRWFWRLRNNRVQEGYPMQIE 400
Query: 172 TFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDA 351
FW LP +IDA YE + + VFF G++YWV+ T+E GYP L LG + +D
Sbjct: 401 QFWKGLPARIDAAYERA-DGRFVFFKGDKYWVFKEVTVEPGYPHSLGELGSCLPREGIDT 459
Query: 352 AFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSY 531
A W KTY F G+++WRY+E ++ DPG+PK I W IP + G ++Y
Sbjct: 460 ALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPIT-VWKGIPQAPQGAFISKEGYYTY 518
Query: 532 FFKGAYYLKLENQSLKSVKFG---SIKSDWLGC 621
F+KG Y K +NQ L SV+ G +I DW+GC
Sbjct: 519 FYKGRDYWKFDNQKL-SVEPGYPRNILRDWMGC 550
>ref|XP_544165.2| PREDICTED: similar to matrix metalloproteinase 16 isoform 1 [Canis
familiaris].
Length = 595
Score = 148 bits (374), Expect = 7e-36
Identities = 84/205 (40%), Positives = 114/205 (55%), Gaps = 3/205 (1%)
Frame = +1
Query: 16 PTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPE 195
P+ P IC D F+ ++ +R E+F FKD++ WR R P+ + FW LP
Sbjct: 321 PSYPGAKPNIC--DGNFNTLAILRREMFVFKDQWFWRVRNNRVMDGYPMQITYFWRGLPP 378
Query: 196 KIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNK 375
IDAVYE + VFF GN+YWV+ +TL+ GYP L +LG +D+A W
Sbjct: 379 SIDAVYEN-SDGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGSGIPPHGIDSAIWWEDVG 437
Query: 376 KTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYL 555
KTY F GD++WRY+E K MDPG+PK I W IP++ + G +YF+KG Y
Sbjct: 438 KTYFFKGDRYWRYSEEMKTMDPGYPKPIT-VWKGIPESPQGAFVHKENGFTYFYKGKEYW 496
Query: 556 KLENQSLKSVKFG---SIKSDWLGC 621
K NQ LK V+ G SI D++GC
Sbjct: 497 KFNNQILK-VEPGYPRSILKDFMGC 520
>ref|XP_546546.2| PREDICTED: similar to Interstitial collagenase precursor (Matrix
metalloproteinase-1) (MMP-1) (Fibroblast collagenase)
[Canis familiaris].
Length = 465
Score = 147 bits (372), Expect = 1e-35
Identities = 76/205 (37%), Positives = 110/205 (53%), Gaps = 1/205 (0%)
Frame = +1
Query: 10 PTPTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPEL 189
P GP TP++C + + FD I+ IRGE+ F KDRF R V P + ++ FWP L
Sbjct: 265 PVQPTGPQTPQVCDRKLTFDAITTIRGEVMFLKDRFYMR-VNPFYPEVELNFISVFWPNL 323
Query: 190 PEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPL-TSLGLPPDVQKVDAAFNWS 366
P + A YE + ++ FF G++YWV + GYPK + S G P V+ +DAA +
Sbjct: 324 PNGLQAAYEVSERDEVRFFKGDKYWVVQGQDVLYGYPKDIHRSFGFPRTVKSIDAAVSDE 383
Query: 367 KNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGA 546
KTY F +K+WRY+E K+ MD G+P++IA + I +DAV Q G YFF G
Sbjct: 384 NTGKTYFFVANKYWRYDEYKQSMDAGYPQMIAAGFPGIGHKVDAV--FQKDGFFYFFHGK 441
Query: 547 YYLKLENQSLKSVKFGSIKSDWLGC 621
K + ++ + + S W C
Sbjct: 442 RQYKFDLRTKRVLSLDKANS-WFNC 465
>ref|XP_544383.2| PREDICTED: similar to matrix metalloproteinase 14 (membrane-inserted)
[Canis familiaris].
Length = 741
Score = 144 bits (363), Expect = 1e-34
Identities = 75/197 (38%), Positives = 108/197 (54%), Gaps = 2/197 (1%)
Frame = +1
Query: 37 PEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYE 216
P IC D FD ++ +RGE+F FK R+ WR R P+ + FW LP I A YE
Sbjct: 430 PNICDGD--FDTVAMLRGEMFVFKGRWFWRVRHNRVLDNYPMPIGHFWRGLPSDISAAYE 487
Query: 217 APQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAG 396
Q+ + VFF G+ YW++ + LE GYP+PLTS GL ++D A W T+ F
Sbjct: 488 R-QDGRFVFFKGDRYWLFREANLEPGYPQPLTSYGLGIPYDRIDTAIWWEPTGHTFFFQE 546
Query: 397 DKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSL 576
D++WR+NE ++ DPG+PK I+ W IP + ++YF+KG Y K +N+ L
Sbjct: 547 DRYWRFNEETQRGDPGYPKPIS-VWQGIPTSPKGAFLSNDAAYTYFYKGTKYWKFDNERL 605
Query: 577 KSVKF--GSIKSDWLGC 621
+ SI D++GC
Sbjct: 606 RMEPGYPKSILRDFMGC 622
>ref|XP_856947.1| PREDICTED: similar to matrix metalloproteinase 14 preproprotein
isoform 2 [Canis familiaris].
Length = 582
Score = 141 bits (355), Expect = 1e-33
Identities = 82/212 (38%), Positives = 117/212 (55%), Gaps = 3/212 (1%)
Frame = +1
Query: 16 PTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPE 195
PT GP IC D FD ++ +RGE+F FK+R+ WR + P+ + FW LP
Sbjct: 311 PTYGP---NIC--DGNFDTVAVLRGEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPA 365
Query: 196 KIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNK 375
I+ YE ++ K VFF G+++WV+ ++LE GYPK + LG K+DAA W N
Sbjct: 366 SINTAYER-KDGKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNG 424
Query: 376 KTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYL 555
KTY F G+K++R+NE + +D +PK I W IP++ +YF+KG Y
Sbjct: 425 KTYFFRGNKYYRFNEELRAVDSEYPKNI-KVWEGIPESPRGSFMGSDEVFTYFYKGNKYW 483
Query: 556 KLENQSLKSVKFGSIKS---DWLGC*AGSTSP 642
K NQ LK V+ G KS DW+GC + + P
Sbjct: 484 KFNNQKLK-VEPGYPKSALRDWMGCPSSGSRP 514
>ref|XP_546547.2| PREDICTED: similar to Neutrophil collagenase precursor (Matrix
metalloproteinase-8) (MMP-8) (PMNL collagenase)
(PMNL-CL) [Canis familiaris].
Length = 451
Score = 141 bits (355), Expect = 1e-33
Identities = 72/204 (35%), Positives = 108/204 (52%)
Frame = +1
Query: 10 PTPTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPEL 189
P GP TP C + FD I+ +RGEI FFKD++ WR P+ + ++ FWP L
Sbjct: 253 PVQPTGPSTPTTCDPRLTFDAIATLRGEILFFKDKYFWRR-HPQLPRVELNFISLFWPSL 311
Query: 190 PEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSK 369
P+ I A YE ++ F G++YW S +++GYPK ++ P VQ +DAA +
Sbjct: 312 PDGIQAAYEDVDKDLVFLFKGSQYWALSGYDIKQGYPKDISDYSFPSSVQAIDAAVYY-- 369
Query: 370 NKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAY 549
+KTY F D+ WRY+ ++ M+PG+PK IA + I +DAV Q FF G
Sbjct: 370 RRKTYFFVNDQVWRYDNQRQSMEPGYPKSIASIFPGIESTVDAV--FQQNHVFLFFSGPR 427
Query: 550 YLKLENQSLKSVKFGSIKSDWLGC 621
Y + + + ++ G + WL C
Sbjct: 428 YYAFDLGAHEVIRVGR-SNRWLNC 450
>ref|XP_536598.2| PREDICTED: similar to Collagenase 3 precursor (Matrix
metalloproteinase-13) (MMP-13) [Canis familiaris].
Length = 470
Score = 139 bits (350), Expect = 4e-33
Identities = 65/172 (37%), Positives = 98/172 (56%)
Frame = +1
Query: 28 PVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDA 207
P TP+ C + D I+ +RGE FKDRF WR + P+ L +FWPELP +IDA
Sbjct: 277 PKTPDKCDPSLSLDAITSLRGETMIFKDRFFWR-LHPQQVDAELFLTKSFWPELPNRIDA 335
Query: 208 VYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYI 387
YE P + F G +YW + + GYP+ ++ LG P +V+K+ AA ++ KT
Sbjct: 336 AYEHPSRDLIFIFRGRKYWALNGYDILEGYPQKISELGFPKEVKKISAAVHFEDTGKTLF 395
Query: 388 FAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKG 543
F+G++ W Y++ + MD +P+LI + + I D +DAV + G+ YFF G
Sbjct: 396 FSGNQVWSYDDTNQIMDKDYPRLIEEDFPGIGDKVDAV--YEKNGYIYFFNG 445
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,510,290
Number of extensions: 1425788
Number of successful extensions: 5284
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 5167
Number of HSP's successfully gapped: 27
Length of query: 336
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 233
Effective length of database: 15,440,896
Effective search space: 3597728768
Effective search space used: 3597728768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009370
(1008 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999357.1| 72 kDa type IV collagenase [Sus scrofa]. 420 e-118
Alignment gi|NP_001159780.1| stromelysin-1 [Sus scrofa]. 150 1e-36
Alignment gi|XP_001926652.1| PREDICTED: matrix metalloproteinase-16 [Sus ... 148 4e-36
Alignment gi|XP_003360593.1| PREDICTED: matrix metalloproteinase-24 [Sus ... 148 5e-36
Alignment gi|XP_003357310.1| PREDICTED: neutrophil collagenase-like [Sus ... 144 6e-35
Alignment gi|XP_003129864.1| PREDICTED: neutrophil collagenase [Sus scrof... 144 6e-35
Alignment gi|XP_003127010.2| PREDICTED: matrix metalloproteinase-15 [Sus ... 143 1e-34
Alignment gi|NP_001159701.1| interstitial collagenase [Sus scrofa]. 140 1e-33
Alignment gi|XP_001925199.2| PREDICTED: LOW QUALITY PROTEIN: matrix metal... 140 1e-33
Alignment gi|NP_999404.1| matrix metalloproteinase-14 precursor [Sus scro... 139 3e-33
>ref|NP_999357.1| 72 kDa type IV collagenase [Sus scrofa].
Length = 661
Score = 420 bits (1079), Expect = e-118
Identities = 200/207 (96%), Positives = 200/207 (96%)
Frame = +1
Query: 1 GHRPTPTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFW 180
G PTPTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPM ATFW
Sbjct: 455 GTGPTPTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMVAPAGATFW 514
Query: 181 PELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFN 360
PELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFN
Sbjct: 515 PELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFN 574
Query: 361 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFK 540
WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFK
Sbjct: 575 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFK 634
Query: 541 GAYYLKLENQSLKSVKFGSIKSDWLGC 621
GAYYLKLENQSLKSVKFGSIKSDWLGC
Sbjct: 635 GAYYLKLENQSLKSVKFGSIKSDWLGC 661
>ref|NP_001159780.1| stromelysin-1 [Sus scrofa].
Length = 477
Score = 150 bits (378), Expect = 1e-36
Identities = 75/198 (37%), Positives = 111/198 (56%)
Frame = +1
Query: 28 PVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDA 207
P TP C + FD IS +RGEI FFKDR WR R +P L +++FWP LP IDA
Sbjct: 284 PGTPATCDPALSFDAISTLRGEILFFKDRHFWRKSFRRLEPEFHL-ISSFWPPLPSSIDA 342
Query: 208 VYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYI 387
E ++ F G ++W + ++ GYP+ + +LG P V+K+DAA + + KKTY
Sbjct: 343 ACEVISKDTVFIFKGTQFWAIRGNDVQPGYPRSIHTLGFPSTVKKIDAAISDKETKKTYF 402
Query: 388 FAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLEN 567
F DK+WR++E ++ M+PGFPK I + + + +DAV + G YFF G+ + +
Sbjct: 403 FVEDKYWRFDEKRQSMEPGFPKQIVEDFPGVEPKVDAV--FEAFGFFYFFNGSSQFEFD- 459
Query: 568 QSLKSVKFGSIKSDWLGC 621
+ K V + WL C
Sbjct: 460 PNAKKVTHVLKSNKWLNC 477
>ref|XP_001926652.1| PREDICTED: matrix metalloproteinase-16 [Sus scrofa].
Length = 607
Score = 148 bits (374), Expect = 4e-36
Identities = 84/205 (40%), Positives = 114/205 (55%), Gaps = 3/205 (1%)
Frame = +1
Query: 16 PTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPE 195
P+ P IC D F+ ++ +R E+F FKD++ WR R P+ + FW LP
Sbjct: 333 PSYPGAKPNIC--DGNFNTLAILRREMFVFKDQWFWRVRNNRVMDGYPMQITYFWRGLPP 390
Query: 196 KIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNK 375
IDAVYE + VFF GN+YWV+ +TL+ GYP L +LG +D+A W
Sbjct: 391 SIDAVYEN-SDGNFVFFKGNKYWVFKDTTLQPGYPHDLMTLGSGIPPHGIDSAIWWEDVG 449
Query: 376 KTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYL 555
KTY F GD++WRY+E K MDPG+PK I W IP++ + G +YF+KG Y
Sbjct: 450 KTYFFKGDRYWRYSEEMKTMDPGYPKPIT-VWKGIPESPQGAFVHKENGFTYFYKGKEYW 508
Query: 556 KLENQSLKSVKFG---SIKSDWLGC 621
K NQ LK V+ G SI D++GC
Sbjct: 509 KFNNQILK-VEPGYPRSILKDFMGC 532
>ref|XP_003360593.1| PREDICTED: matrix metalloproteinase-24 [Sus scrofa].
Length = 393
Score = 148 bits (373), Expect = 5e-36
Identities = 77/197 (39%), Positives = 110/197 (55%), Gaps = 2/197 (1%)
Frame = +1
Query: 37 PEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYE 216
P IC D F+ ++ RGE+F FKDR+ WR R + P+ + FW LP +IDA YE
Sbjct: 125 PNIC--DGNFNTVALFRGEMFVFKDRWFWRLRNNRVQEGYPMQIEQFWKGLPARIDAAYE 182
Query: 217 APQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAG 396
+ + VFF G++YWV+ T+E GYP L LG + +D A W KTY F G
Sbjct: 183 RA-DGRFVFFKGDKYWVFKEVTVEPGYPHSLGELGSCLPREGIDTALRWEPVGKTYFFKG 241
Query: 397 DKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQ-- 570
+++WRY+E ++ DPG+PK I W IP + G ++YF+KG Y K +NQ
Sbjct: 242 ERYWRYSEERRATDPGYPKPIT-VWKGIPQAPQGAFISKEGYYTYFYKGRDYWKFDNQKL 300
Query: 571 SLKSVKFGSIKSDWLGC 621
S++ +I DW+GC
Sbjct: 301 SVEXXXXXNILRDWMGC 317
>ref|XP_003357310.1| PREDICTED: neutrophil collagenase-like [Sus scrofa].
Length = 468
Score = 144 bits (364), Expect = 6e-35
Identities = 72/204 (35%), Positives = 108/204 (52%)
Frame = +1
Query: 10 PTPTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPEL 189
P GP TP C + FD I+ +RGEI FFKD++ WR P+ + + ++ FWP L
Sbjct: 270 PVQPTGPTTPRACDPRLTFDAIATLRGEIIFFKDKYFWRR-HPQLRRVELNFISLFWPSL 328
Query: 190 PEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSK 369
I A YE ++ F GN+YW S +++GYPK +++ G P VQ +DAA ++
Sbjct: 329 RNGIQAAYEDSDKDLVFVFKGNKYWALSGYDIQQGYPKSISNYGFPSSVQAIDAAVSY-- 386
Query: 370 NKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAY 549
KTY F ++FWRY++ ++ MDPG+PK A + I +DAV Q FF G
Sbjct: 387 RGKTYFFVNNQFWRYDDQRQSMDPGYPKSTASTFQGIESKIDAV--FQQHHFFLFFSGPI 444
Query: 550 YLKLENQSLKSVKFGSIKSDWLGC 621
Y + + + + + WL C
Sbjct: 445 YYAFDLNARRVTRIDR-SNRWLNC 467
>ref|XP_003129864.1| PREDICTED: neutrophil collagenase [Sus scrofa].
Length = 468
Score = 144 bits (364), Expect = 6e-35
Identities = 72/204 (35%), Positives = 108/204 (52%)
Frame = +1
Query: 10 PTPTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPEL 189
P GP TP C + FD I+ +RGEI FFKD++ WR P+ + + ++ FWP L
Sbjct: 270 PVQPTGPTTPRACDPRLTFDAIATLRGEIIFFKDKYFWRR-HPQLRRVELNFISLFWPSL 328
Query: 190 PEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSK 369
I A YE ++ F GN+YW S +++GYPK +++ G P VQ +DAA ++
Sbjct: 329 RNGIQAAYEDSDKDLVFVFKGNKYWALSGYDIQQGYPKSISNYGFPSSVQAIDAAVSY-- 386
Query: 370 NKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAY 549
KTY F ++FWRY++ ++ MDPG+PK A + I +DAV Q FF G
Sbjct: 387 RGKTYFFVNNQFWRYDDQRQSMDPGYPKSTASTFQGIESKIDAV--FQQHHFFLFFSGPI 444
Query: 550 YLKLENQSLKSVKFGSIKSDWLGC 621
Y + + + + + WL C
Sbjct: 445 YYAFDLNARRVTRIDR-SNRWLNC 467
>ref|XP_003127010.2| PREDICTED: matrix metalloproteinase-15 [Sus scrofa].
Length = 819
Score = 143 bits (361), Expect = 1e-34
Identities = 75/197 (38%), Positives = 108/197 (54%), Gaps = 2/197 (1%)
Frame = +1
Query: 37 PEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYE 216
P IC D FD ++ +RGE+F FK R+ WR R P+ + FW LP I A YE
Sbjct: 511 PNICDGD--FDTVAMLRGEMFVFKGRWFWRVRHNRVLDNYPMPIGHFWRGLPSDISAAYE 568
Query: 217 APQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAG 396
Q+ + VFF G+ YW++ + LE GYP+PLTS GL ++D A W T+ F
Sbjct: 569 R-QDGRFVFFKGDRYWLFREANLEPGYPQPLTSYGLGIPYDRIDTAIWWEPTGHTFFFQE 627
Query: 397 DKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSL 576
D++WR+NE ++ DPG+PK I+ W IP + ++YF+KG Y K +N+ L
Sbjct: 628 DRYWRFNEDTQRGDPGYPKPIS-VWQGIPASPKGAFLSNDAAYTYFYKGTKYWKFDNERL 686
Query: 577 KSVKF--GSIKSDWLGC 621
+ SI D++GC
Sbjct: 687 RMEPGYPKSILRDFMGC 703
>ref|NP_001159701.1| interstitial collagenase [Sus scrofa].
Length = 469
Score = 140 bits (353), Expect = 1e-33
Identities = 73/205 (35%), Positives = 109/205 (53%), Gaps = 1/205 (0%)
Frame = +1
Query: 10 PTPTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPEL 189
P GP TP++C + FD I+ +RGE+ FFKDRF RT + + + ++ FWP++
Sbjct: 266 PVQPSGPQTPQVCDSKLTFDAITTLRGELMFFKDRFYMRTNSFYPE-VELNFISVFWPQV 324
Query: 190 PEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPL-TSLGLPPDVQKVDAAFNWS 366
P + A YE ++ FF GN+YW + GYPK + S G P V+ +DAA
Sbjct: 325 PNGLQAAYEIADRDEVRFFKGNKYWAVRGQDVLYGYPKDIHRSFGFPSTVKNIDAAVFEE 384
Query: 367 KNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGA 546
KTY F + WRY+E K+ MD G+PK+IA+ + I + +DAV Q G YFF G
Sbjct: 385 DTGKTYFFVAHECWRYDEYKQSMDTGYPKMIAEEFPGIGNKVDAV--FQKDGFLYFFHGT 442
Query: 547 YYLKLENQSLKSVKFGSIKSDWLGC 621
+ + ++ + + S W C
Sbjct: 443 RQYQFDFKTKRILTLQKANS-WFNC 466
>ref|XP_001925199.2| PREDICTED: LOW QUALITY PROTEIN: matrix metalloproteinase-17 [Sus
scrofa].
Length = 592
Score = 140 bits (353), Expect = 1e-33
Identities = 74/192 (38%), Positives = 106/192 (55%), Gaps = 6/192 (3%)
Frame = +1
Query: 64 FDGISQIRGEIFFFKDRFIWRTVTPRDK-PMGPLLVATFWPELP---EKIDAVYEAPQEE 231
FD ++QI GE FFK ++ WR R + P+ + FW L + +DAVYE +
Sbjct: 336 FDAVAQIXGESLFFKGKYFWRLNRDRHLVSLQPVQMHRFWRGLLLHLDSVDAVYERTSDH 395
Query: 232 KAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWR 411
K +FF G+ YWV+ + +E GYP+P++ GLPP VDAAF+W+ N KTY F +WR
Sbjct: 396 KIIFFKGDRYWVFKDNNVEEGYPRPVSDFGLPPG--GVDAAFSWAHNDKTYFFKDQLYWR 453
Query: 412 YNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKF 591
Y+E ++MDPG P + W +P LD + G +YFF+G Y K+ + L+
Sbjct: 454 YDEHTRRMDPGHPAQ-SPPWRGVPSTLDDAMRWSDGA-AYFFRGKEYWKVLDSELEVAPG 511
Query: 592 --GSIKSDWLGC 621
S DWL C
Sbjct: 512 YPQSTARDWLVC 523
>ref|NP_999404.1| matrix metalloproteinase-14 precursor [Sus scrofa].
Length = 580
Score = 139 bits (349), Expect = 3e-33
Identities = 81/208 (38%), Positives = 115/208 (55%), Gaps = 3/208 (1%)
Frame = +1
Query: 16 PTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPE 195
PT GP IC D FD ++ +RGE+F FK+R+ WR + P+ + FW LP
Sbjct: 310 PTYGP---NIC--DGNFDTVAMLRGEMFVFKERWFWRVRKNQVMDGYPMPIGQFWRGLPA 364
Query: 196 KIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNK 375
I+ YE ++ K VFF G+++WV+ ++LE GYPK + LG K+DAA W N
Sbjct: 365 SINTAYER-KDGKFVFFKGDKHWVFDEASLEPGYPKHIKELGRRLPTDKIDAALFWMPNG 423
Query: 376 KTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYL 555
K Y F G+K++R+NE + +D +PK I W IP++ +YF+KG Y
Sbjct: 424 KDYFFRGNKYYRFNEELRAVDSEYPKNI-KVWEGIPESPRGSFMGSDEVFTYFYKGNKYW 482
Query: 556 KLENQSLKSVKFGSIKS---DWLGC*AG 630
K NQ LK V+ G KS DW+GC +G
Sbjct: 483 KFNNQKLK-VEPGYPKSALRDWMGCPSG 509
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,874,611
Number of extensions: 896012
Number of successful extensions: 3668
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 3565
Number of HSP's successfully gapped: 22
Length of query: 336
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,879,129
Effective search space: 2104353573
Effective search space used: 2104353573
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009370
(1008 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032636.1| 72 kDa type IV collagenase precursor [Mus muscu... 427 e-120
Alignment gi|NP_062344.1| stromelysin-2 precursor [Mus musculus]. 157 1e-38
Alignment gi|NP_034939.1| stromelysin-1 preproprotein [Mus musculus]. 154 8e-38
Alignment gi|NP_034938.3| matrix metalloproteinase-24 [Mus musculus]. 150 2e-36
Alignment gi|NP_062698.2| matrix metalloproteinase-16 precursor [Mus musc... 148 7e-36
Alignment gi|NP_035976.3| matrix metalloproteinase-17 precursor [Mus musc... 146 2e-35
Alignment gi|NP_032634.3| matrix metalloproteinase-14 [Mus musculus]. 140 2e-33
Alignment gi|NP_032635.1| matrix metalloproteinase-15 precursor [Mus musc... 138 8e-33
Alignment gi|NP_001028511.1| matrix metalloproteinase-25 precursor [Mus m... 134 1e-31
Alignment gi|NP_032637.3| neutrophil collagenase precursor [Mus musculus]. 133 2e-31
>ref|NP_032636.1| 72 kDa type IV collagenase precursor [Mus musculus].
Length = 662
Score = 427 bits (1099), Expect = e-120
Identities = 201/207 (97%), Positives = 204/207 (98%)
Frame = +1
Query: 1 GHRPTPTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFW 180
G PTPTLGPVTPEICKQDIVFDGI+QIRGEIFFFKDRFIWRTVTPRDKP GPLLVATFW
Sbjct: 456 GTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPTGPLLVATFW 515
Query: 181 PELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFN 360
PELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQ+VDAAFN
Sbjct: 516 PELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQQVDAAFN 575
Query: 361 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFK 540
WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIAD+WNAIPDNLDAVVDLQGGGHSYFFK
Sbjct: 576 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADSWNAIPDNLDAVVDLQGGGHSYFFK 635
Query: 541 GAYYLKLENQSLKSVKFGSIKSDWLGC 621
GAYYLKLENQSLKSVKFGSIKSDWLGC
Sbjct: 636 GAYYLKLENQSLKSVKFGSIKSDWLGC 662
>ref|NP_062344.1| stromelysin-2 precursor [Mus musculus].
Length = 476
Score = 157 bits (397), Expect = 1e-38
Identities = 78/198 (39%), Positives = 115/198 (58%)
Frame = +1
Query: 28 PVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDA 207
P TP+ C + FD +S +RGE+ FFKDR+ WR +P L+ A FWP LP +DA
Sbjct: 283 PETPDKCDPALSFDSVSTLRGEVLFFKDRYFWRRSHWNPEPEFHLISA-FWPTLPSDLDA 341
Query: 208 VYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYI 387
YEA + + F G+++W + ++ GYPK + +LG PP V+K+DAA + KKTY
Sbjct: 342 AYEAHNTDSVLIFKGSQFWAVRGNEVQAGYPKGIHTLGFPPTVKKIDAAVFEKEKKKTYF 401
Query: 388 FAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLEN 567
F GDK+WR++E + MD GFP+ I D + I +DAV L G YFF+G+ + +
Sbjct: 402 FVGDKYWRFDETRHVMDKGFPRQITDDFPGIEPQVDAV--LHEFGFFYFFRGSSQFEFD- 458
Query: 568 QSLKSVKFGSIKSDWLGC 621
+ ++V + WL C
Sbjct: 459 PNARTVTHILKSNSWLLC 476
>ref|NP_034939.1| stromelysin-1 preproprotein [Mus musculus].
Length = 479
Score = 154 bits (390), Expect = 8e-38
Identities = 75/201 (37%), Positives = 112/201 (55%)
Frame = +1
Query: 19 TLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEK 198
+L P T +C + FD +S +RGE+ FFKDR WR +P L+++FWP LP
Sbjct: 283 SLEPETSPMCSSTLFFDAVSTLRGEVLFFKDRHFWRKSLRTPEPEF-YLISSFWPSLPSN 341
Query: 199 IDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKK 378
+DA YE + F GN++W GYPK + +LGLP V+K+DAA + + +K
Sbjct: 342 MDAAYEVTNRDTVFIFKGNQFWAIRGHEELAGYPKSIHTLGLPATVKKIDAAISNKEKRK 401
Query: 379 TYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLK 558
TY F DK+WR++E K+ M+PGFP+ IA+ + + +DAV + G YFF G+ L+
Sbjct: 402 TYFFVEDKYWRFDEKKQSMEPGFPRKIAEDFPGVDSRVDAV--FEAFGFLYFFSGSSQLE 459
Query: 559 LENQSLKSVKFGSIKSDWLGC 621
+ + K V + W C
Sbjct: 460 FD-PNAKKVTHILKSNSWFNC 479
>ref|NP_034938.3| matrix metalloproteinase-24 [Mus musculus].
Length = 618
Score = 150 bits (378), Expect = 2e-36
Identities = 86/213 (40%), Positives = 118/213 (55%), Gaps = 9/213 (4%)
Frame = +1
Query: 10 PTPTLG--PVTP----EICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVA 171
P P LG P TP IC D F+ ++ RGE+F FKDR+ WR R + P+ +
Sbjct: 335 PRPPLGDRPSTPGAKPNIC--DGNFNTVALFRGEMFVFKDRWFWRLRNNRVQEGYPMQIE 392
Query: 172 TFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDA 351
FW LP +IDA YE + + VFF G++YWV+ T+E GYP L LG + +D
Sbjct: 393 QFWKGLPARIDAAYERA-DGRFVFFKGDKYWVFKEVTVEPGYPHSLGELGSCLPREGIDT 451
Query: 352 AFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSY 531
A W KTY F G+++WRY+E ++ DPG+PK I W IP + G ++Y
Sbjct: 452 ALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPIT-VWKGIPQAPQGAFISKEGYYTY 510
Query: 532 FFKGAYYLKLENQSLKSVKFG---SIKSDWLGC 621
F+KG Y K +NQ L SV+ G +I DW+GC
Sbjct: 511 FYKGRDYWKFDNQKL-SVEPGYPRNILRDWMGC 542
>ref|NP_062698.2| matrix metalloproteinase-16 precursor [Mus musculus].
Length = 607
Score = 148 bits (373), Expect = 7e-36
Identities = 86/207 (41%), Positives = 117/207 (56%), Gaps = 5/207 (2%)
Frame = +1
Query: 16 PTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPE 195
P+ P IC D F+ ++ +R E+F FKD++ WR R P+ + FW LP
Sbjct: 333 PSYPGAKPNIC--DGNFNTLAILRREMFVFKDQWFWRVRNNRVMDGYPMQITYFWRGLPP 390
Query: 196 KIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSL--GLPPDVQKVDAAFNWSK 369
IDAVYE + VFF GN+YWV+ +TL+ GYP L +L G+PP +D+A W
Sbjct: 391 SIDAVYEN-SDGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGNGIPP--HGIDSAIWWED 447
Query: 370 NKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAY 549
KTY F GD++WRY+E K MDPG+PK I W IP++ + G +YF+KG
Sbjct: 448 VGKTYFFKGDRYWRYSEEMKTMDPGYPKPIT-IWKGIPESPQGAFVHKENGFTYFYKGKE 506
Query: 550 YLKLENQSLKSVKFG---SIKSDWLGC 621
Y K NQ LK V+ G SI D++GC
Sbjct: 507 YWKFNNQILK-VEPGYPRSILKDFMGC 532
>ref|NP_035976.3| matrix metalloproteinase-17 precursor [Mus musculus].
Length = 578
Score = 146 bits (369), Expect = 2e-35
Identities = 82/218 (37%), Positives = 116/218 (53%), Gaps = 6/218 (2%)
Frame = +1
Query: 64 FDGISQIRGEIFFFKDRFIWRTVTPRDK-PMGPLLVATFWPELP---EKIDAVYEAPQEE 231
FD ++QIRGE FFFK ++ WR R + P + FW LP + +DAVYE +
Sbjct: 340 FDAVAQIRGEAFFFKGKYFWRLTRDRHLVSLQPAQMHRFWRGLPLHLDSVDAVYERTSDH 399
Query: 232 KAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWR 411
K VFF G+ YWV+ + +E GYP+P++ LPP +DA F+W+ N +TY F +WR
Sbjct: 400 KIVFFKGDRYWVFKDNNVEEGYPRPVSDFSLPPG--GIDAVFSWAHNDRTYFFKDQLYWR 457
Query: 412 YNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKF 591
Y++ ++MDPG+P W +P LD + G SYFF+G Y K+ + L++
Sbjct: 458 YDDHTRRMDPGYPAQ-GPLWRGVPSMLDDAMRWSDGA-SYFFRGQEYWKVLDGELEAAPG 515
Query: 592 --GSIKSDWLGC*AGSTSPRACLSIAFCTPGPGCQGRT 699
S DWL C P A GPG QGR+
Sbjct: 516 YPQSTARDWLVC----GEPLADAE----DVGPGPQGRS 545
>ref|NP_032634.3| matrix metalloproteinase-14 [Mus musculus].
Length = 582
Score = 140 bits (352), Expect = 2e-33
Identities = 79/201 (39%), Positives = 113/201 (56%), Gaps = 3/201 (1%)
Frame = +1
Query: 37 PEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYE 216
P IC D FD ++ +RGE+F FK+R+ WR + P+ + FW LP I+ YE
Sbjct: 316 PNIC--DGNFDTVAMLRGEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPASINTAYE 373
Query: 217 APQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAG 396
++ K VFF G+++WV+ ++LE GYPK + LG K+DAA W N KTY F G
Sbjct: 374 R-KDGKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG 432
Query: 397 DKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSL 576
+K++R+NE + +D +PK I W IP++ +YF+KG Y K NQ L
Sbjct: 433 NKYYRFNEEFRAVDSEYPKNI-KVWEGIPESPRGSFMGSDEVFTYFYKGNKYWKFNNQKL 491
Query: 577 KSVKFGSIKS---DWLGC*AG 630
K V+ G KS DW+GC +G
Sbjct: 492 K-VEPGYPKSALRDWMGCPSG 511
>ref|NP_032635.1| matrix metalloproteinase-15 precursor [Mus musculus].
Length = 657
Score = 138 bits (347), Expect = 8e-33
Identities = 74/197 (37%), Positives = 104/197 (52%), Gaps = 2/197 (1%)
Frame = +1
Query: 37 PEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYE 216
P IC D FD ++ +RGE+F FK R+ WR R P+ + FW LP I A YE
Sbjct: 363 PNIC--DGNFDTVAVLRGEMFVFKGRWFWRVRHNRVLDNYPMPIGHFWRGLPGNISAAYE 420
Query: 217 APQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAG 396
Q+ VFF GN YW++ + LE GYP+PL+S G ++D A W T+ F
Sbjct: 421 R-QDGHFVFFKGNRYWLFREANLEPGYPQPLSSYGTDIPYDRIDTAIWWEPTGHTFFFQA 479
Query: 397 DKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSL 576
D++WR+NE + DPG+PK I+ W IP + ++YF+KG Y K N+ L
Sbjct: 480 DRYWRFNEETQHGDPGYPKPIS-VWQGIPTSPKGAFLSNDAAYTYFYKGTKYWKFNNERL 538
Query: 577 KSVKF--GSIKSDWLGC 621
+ SI D++GC
Sbjct: 539 RMEPGHPKSILRDFMGC 555
>ref|NP_001028511.1| matrix metalloproteinase-25 precursor [Mus musculus].
Length = 615
Score = 134 bits (337), Expect = 1e-31
Identities = 80/221 (36%), Positives = 116/221 (52%), Gaps = 11/221 (4%)
Frame = +1
Query: 16 PTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRT------VTPRDKPMGPLLVATF 177
P P TP + + FD ++ IRGEIF FK + WR V+PR P + F
Sbjct: 359 PPDSPATPVPDRCEGNFDAVANIRGEIFLFKGPWFWRLQPSGQLVSPR-----PAGLHRF 413
Query: 178 WPELP---EKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVD 348
W LP + I A Y P + + + F+G ++WV+ LE G +PL GLPP + VD
Sbjct: 414 WEGLPTHVKVIQAAYARPLDGRIILFSGPQFWVFQERQLE-GAARPLVEFGLPPG-EDVD 471
Query: 349 AAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHS 528
A F+W N KTY+ G K+WRY+EV + DPG+P+ ++ W+ P D V + G +
Sbjct: 472 AVFSWPHNGKTYLIRGQKYWRYDEVAARPDPGYPRALS-LWDGAPFAPDDVT-ISNTGDT 529
Query: 529 YFFKGAYYLKLENQSLKSVKFG--SIKSDWLGC*AGSTSPR 645
YFFKG ++ + S+K+ I WL C A ++ PR
Sbjct: 530 YFFKGTHFWRFAEGSVKAESDSPQPIGPKWLDCPAPNSDPR 570
>ref|NP_032637.3| neutrophil collagenase precursor [Mus musculus].
Length = 465
Score = 133 bits (335), Expect = 2e-31
Identities = 71/204 (34%), Positives = 107/204 (52%)
Frame = +1
Query: 10 PTPTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPEL 189
P GP TP+ C + FD + +RGEI+FFKD++ WR P+ + + ++ FWP L
Sbjct: 267 PIQPTGPSTPKACDPHLRFDATTTLRGEIYFFKDKYFWRR-HPQLRTVDLNFISLFWPFL 325
Query: 190 PEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSK 369
P + A YE + F G +YW S L++GYP+ +++ G P VQ +DAA ++
Sbjct: 326 PNGLQAAYEDFDRDLVFLFKGRQYWALSGYDLQQGYPRDISNYGFPRSVQAIDAAVSY-- 383
Query: 370 NKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAY 549
N KTY F ++ WRY+ ++ MDPG+PK I + + +DAV LQ FF G
Sbjct: 384 NGKTYFFINNQCWRYDNQRRSMDPGYPKSIPSMFPGVNCRVDAVF-LQ-DSFFLFFSGPQ 441
Query: 550 YLKLENQSLKSVKFGSIKSDWLGC 621
Y S + + + WL C
Sbjct: 442 YFAFNFVSHRVTRVAR-SNLWLNC 464
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,303,663
Number of extensions: 1149380
Number of successful extensions: 4467
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 4339
Number of HSP's successfully gapped: 27
Length of query: 336
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 234
Effective length of database: 12,553,887
Effective search space: 2937609558
Effective search space used: 2937609558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009370
(1008 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001121363.1| 72 kDa type IV collagenase isoform b [Homo s... 431 e-121
Alignment gi|NP_004521.1| 72 kDa type IV collagenase isoform a preproprot... 431 e-121
Alignment gi|NP_002416.1| stromelysin-2 preproprotein [Homo sapiens]. 155 7e-38
Alignment gi|NP_001139410.1| interstitial collagenase isoform 2 [Homo sap... 154 9e-38
Alignment gi|NP_002412.1| interstitial collagenase isoform 1 preproprotei... 154 9e-38
Alignment gi|NP_002413.1| stromelysin-1 preproprotein [Homo sapiens]. 154 9e-38
Alignment gi|NP_006681.1| matrix metalloproteinase-24 preproprotein [Homo... 150 2e-36
Alignment gi|NP_005932.2| matrix metalloproteinase-16 [Homo sapiens]. 148 7e-36
Alignment gi|NP_057239.4| matrix metalloproteinase-17 preproprotein [Homo... 145 4e-35
Alignment gi|NP_002415.1| neutrophil collagenase preproprotein [Homo sapi... 143 2e-34
>ref|NP_001121363.1| 72 kDa type IV collagenase isoform b [Homo sapiens].
Length = 610
Score = 431 bits (1108), Expect = e-121
Identities = 202/207 (97%), Positives = 205/207 (99%)
Frame = +1
Query: 1 GHRPTPTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFW 180
G PTPTLGPVTPEICKQDIVFDGI+QIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFW
Sbjct: 404 GTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFW 463
Query: 181 PELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFN 360
PELPEKIDAVYEAPQEEKAVFFAGNEYW+YSASTLERGYPKPLTSLGLPPDVQ+VDAAFN
Sbjct: 464 PELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFN 523
Query: 361 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFK 540
WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFK
Sbjct: 524 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFK 583
Query: 541 GAYYLKLENQSLKSVKFGSIKSDWLGC 621
GAYYLKLENQSLKSVKFGSIKSDWLGC
Sbjct: 584 GAYYLKLENQSLKSVKFGSIKSDWLGC 610
>ref|NP_004521.1| 72 kDa type IV collagenase isoform a preproprotein [Homo sapiens].
Length = 660
Score = 431 bits (1108), Expect = e-121
Identities = 202/207 (97%), Positives = 205/207 (99%)
Frame = +1
Query: 1 GHRPTPTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFW 180
G PTPTLGPVTPEICKQDIVFDGI+QIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFW
Sbjct: 454 GTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFW 513
Query: 181 PELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFN 360
PELPEKIDAVYEAPQEEKAVFFAGNEYW+YSASTLERGYPKPLTSLGLPPDVQ+VDAAFN
Sbjct: 514 PELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFN 573
Query: 361 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFK 540
WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFK
Sbjct: 574 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFK 633
Query: 541 GAYYLKLENQSLKSVKFGSIKSDWLGC 621
GAYYLKLENQSLKSVKFGSIKSDWLGC
Sbjct: 634 GAYYLKLENQSLKSVKFGSIKSDWLGC 660
>ref|NP_002416.1| stromelysin-2 preproprotein [Homo sapiens].
Length = 476
Score = 155 bits (391), Expect = 7e-38
Identities = 78/199 (39%), Positives = 112/199 (56%)
Frame = +1
Query: 25 GPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKID 204
G P C + FD IS +RGE FFKDR+ WR +P L+ A FWP LP +D
Sbjct: 282 GSEMPAKCDPALSFDAISTLRGEYLFFKDRYFWRRSHWNPEPEFHLISA-FWPSLPSYLD 340
Query: 205 AVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTY 384
A YE + F GNE+W + ++ GYP+ + +LG PP ++K+DAA + + KKTY
Sbjct: 341 AAYEVNSRDTVFIFKGNEFWAIRGNEVQAGYPRGIHTLGFPPTIRKIDAAVSDKEKKKTY 400
Query: 385 IFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLE 564
FA DK+WR++E + M+ GFP+LIAD + + +DAV LQ G YFF G+ + +
Sbjct: 401 FFAADKYWRFDENSQSMEQGFPRLIADDFPGVEPKVDAV--LQAFGFFYFFSGSSQFEFD 458
Query: 565 NQSLKSVKFGSIKSDWLGC 621
+ + V + WL C
Sbjct: 459 -PNARMVTHILKSNSWLHC 476
>ref|NP_001139410.1| interstitial collagenase isoform 2 [Homo sapiens].
Length = 403
Score = 154 bits (390), Expect = 9e-38
Identities = 78/205 (38%), Positives = 111/205 (54%), Gaps = 1/205 (0%)
Frame = +1
Query: 10 PTPTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPEL 189
P +GP TP+ C + FD I+ IRGE+ FFKDRF RT P + ++ FWP+L
Sbjct: 200 PVQPIGPQTPKACDSKLTFDAITTIRGEVMFFKDRFYMRT-NPFYPEVELNFISVFWPQL 258
Query: 190 PEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPL-TSLGLPPDVQKVDAAFNWS 366
P ++A YE ++ FF GN+YW + GYPK + +S G P V+ +DAA +
Sbjct: 259 PNGLEAAYEFADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEE 318
Query: 367 KNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGA 546
KTY F +K+WRY+E K+ MDPG+PK+IA + I +DAV G YFF G
Sbjct: 319 NTGKTYFFVANKYWRYDEYKRSMDPGYPKMIAHDFPGIGHKVDAV--FMKDGFFYFFHGT 376
Query: 547 YYLKLENQSLKSVKFGSIKSDWLGC 621
K + ++ + + S W C
Sbjct: 377 RQYKFDPKTKRILTLQKANS-WFNC 400
>ref|NP_002412.1| interstitial collagenase isoform 1 preproprotein [Homo sapiens].
Length = 469
Score = 154 bits (390), Expect = 9e-38
Identities = 78/205 (38%), Positives = 111/205 (54%), Gaps = 1/205 (0%)
Frame = +1
Query: 10 PTPTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPEL 189
P +GP TP+ C + FD I+ IRGE+ FFKDRF RT P + ++ FWP+L
Sbjct: 266 PVQPIGPQTPKACDSKLTFDAITTIRGEVMFFKDRFYMRT-NPFYPEVELNFISVFWPQL 324
Query: 190 PEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPL-TSLGLPPDVQKVDAAFNWS 366
P ++A YE ++ FF GN+YW + GYPK + +S G P V+ +DAA +
Sbjct: 325 PNGLEAAYEFADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEE 384
Query: 367 KNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGA 546
KTY F +K+WRY+E K+ MDPG+PK+IA + I +DAV G YFF G
Sbjct: 385 NTGKTYFFVANKYWRYDEYKRSMDPGYPKMIAHDFPGIGHKVDAV--FMKDGFFYFFHGT 442
Query: 547 YYLKLENQSLKSVKFGSIKSDWLGC 621
K + ++ + + S W C
Sbjct: 443 RQYKFDPKTKRILTLQKANS-WFNC 466
>ref|NP_002413.1| stromelysin-1 preproprotein [Homo sapiens].
Length = 477
Score = 154 bits (390), Expect = 9e-38
Identities = 76/198 (38%), Positives = 112/198 (56%)
Frame = +1
Query: 28 PVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDA 207
P TP C + FD +S +RGEI FKDR WR + +P L +++FWP LP +DA
Sbjct: 284 PGTPANCDPALSFDAVSTLRGEILIFKDRHFWRKSLRKLEPELHL-ISSFWPSLPSGVDA 342
Query: 208 VYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYI 387
YE ++ F GN++W + + GYP+ + +LG PP V+K+DAA + + KTY
Sbjct: 343 AYEVTSKDLVFIFKGNQFWAIRGNEVRAGYPRGIHTLGFPPTVRKIDAAISDKEKNKTYF 402
Query: 388 FAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLEN 567
F DK+WR++E + M+PGFPK IA+ + I +DAV + G YFF G+ L+ +
Sbjct: 403 FVEDKYWRFDEKRNSMEPGFPKQIAEDFPGIDSKIDAV--FEEFGFFYFFTGSSQLEFD- 459
Query: 568 QSLKSVKFGSIKSDWLGC 621
+ K V + WL C
Sbjct: 460 PNAKKVTHTLKSNSWLNC 477
>ref|NP_006681.1| matrix metalloproteinase-24 preproprotein [Homo sapiens].
Length = 645
Score = 150 bits (378), Expect = 2e-36
Identities = 86/213 (40%), Positives = 118/213 (55%), Gaps = 9/213 (4%)
Frame = +1
Query: 10 PTPTLG--PVTP----EICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVA 171
P P LG P TP IC D F+ ++ RGE+F FKDR+ WR R + P+ +
Sbjct: 362 PRPPLGDRPSTPGTKPNIC--DGNFNTVALFRGEMFVFKDRWFWRLRNNRVQEGYPMQIE 419
Query: 172 TFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDA 351
FW LP +IDA YE + + VFF G++YWV+ T+E GYP L LG + +D
Sbjct: 420 QFWKGLPARIDAAYERA-DGRFVFFKGDKYWVFKEVTVEPGYPHSLGELGSCLPREGIDT 478
Query: 352 AFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSY 531
A W KTY F G+++WRY+E ++ DPG+PK I W IP + G ++Y
Sbjct: 479 ALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPIT-VWKGIPQAPQGAFISKEGYYTY 537
Query: 532 FFKGAYYLKLENQSLKSVKFG---SIKSDWLGC 621
F+KG Y K +NQ L SV+ G +I DW+GC
Sbjct: 538 FYKGRDYWKFDNQKL-SVEPGYPRNILRDWMGC 569
>ref|NP_005932.2| matrix metalloproteinase-16 [Homo sapiens].
Length = 607
Score = 148 bits (374), Expect = 7e-36
Identities = 84/205 (40%), Positives = 114/205 (55%), Gaps = 3/205 (1%)
Frame = +1
Query: 16 PTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPE 195
P+ P IC D F+ ++ +R E+F FKD++ WR R P+ + FW LP
Sbjct: 333 PSYPGAKPNIC--DGNFNTLAILRREMFVFKDQWFWRVRNNRVMDGYPMQITYFWRGLPP 390
Query: 196 KIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNK 375
IDAVYE + VFF GN+YWV+ +TL+ GYP L +LG +D+A W
Sbjct: 391 SIDAVYEN-SDGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGSGIPPHGIDSAIWWEDVG 449
Query: 376 KTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYL 555
KTY F GD++WRY+E K MDPG+PK I W IP++ + G +YF+KG Y
Sbjct: 450 KTYFFKGDRYWRYSEEMKTMDPGYPKPIT-VWKGIPESPQGAFVHKENGFTYFYKGKEYW 508
Query: 556 KLENQSLKSVKFG---SIKSDWLGC 621
K NQ LK V+ G SI D++GC
Sbjct: 509 KFNNQILK-VEPGYPRSILKDFMGC 532
>ref|NP_057239.4| matrix metalloproteinase-17 preproprotein [Homo sapiens].
Length = 603
Score = 145 bits (367), Expect = 4e-35
Identities = 75/192 (39%), Positives = 107/192 (55%), Gaps = 6/192 (3%)
Frame = +1
Query: 64 FDGISQIRGEIFFFKDRFIWRTVTPRDK-PMGPLLVATFWPELP---EKIDAVYEAPQEE 231
FD ++QIRGE FFFK ++ WR R + P + FW LP + +DAVYE +
Sbjct: 336 FDAVAQIRGEAFFFKGKYFWRLTRDRHLVSLQPAQMHRFWRGLPLHLDSVDAVYERTSDH 395
Query: 232 KAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWR 411
K VFF G+ YWV+ + +E GYP+P++ LPP +DAAF+W+ N +TY F +WR
Sbjct: 396 KIVFFKGDRYWVFKDNNVEEGYPRPVSDFSLPPG--GIDAAFSWAHNDRTYFFKDQLYWR 453
Query: 412 YNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKF 591
Y++ + MDPG+P + W +P LD + G SYFF+G Y K+ + L+
Sbjct: 454 YDDHTRHMDPGYPAQ-SPLWRGVPSTLDDAMRWSDGA-SYFFRGQEYWKVLDGELEVAPG 511
Query: 592 --GSIKSDWLGC 621
S DWL C
Sbjct: 512 YPQSTARDWLVC 523
>ref|NP_002415.1| neutrophil collagenase preproprotein [Homo sapiens].
Length = 467
Score = 143 bits (361), Expect = 2e-34
Identities = 76/204 (37%), Positives = 108/204 (52%)
Frame = +1
Query: 10 PTPTLGPVTPEICKQDIVFDGISQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPEL 189
P GP TP+ C + FD I+ +RGEI FFKDR+ WR P+ + + ++ FWP L
Sbjct: 267 PIQPTGPSTPKPCDPSLTFDAITTLRGEILFFKDRYFWRR-HPQLQRVEMNFISLFWPSL 325
Query: 190 PEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSK 369
P I A YE + F GN+YW S + +GYPK +++ G P VQ +DAA +
Sbjct: 326 PTGIQAAYEDFDRDLIFLFKGNQYWALSGYDILQGYPKDISNYGFPSSVQAIDAAVFY-- 383
Query: 370 NKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAY 549
KTY F D+FWRY+ ++ M+PG+PK I+ A+ I +DAV + H + Y
Sbjct: 384 RSKTYFFVNDQFWRYDNQRQFMEPGYPKSISGAFPGIESKVDAVFQQEHFFHVFSGPRYY 443
Query: 550 YLKLENQSLKSVKFGSIKSDWLGC 621
L Q + V G + WL C
Sbjct: 444 AFDLIAQRVTRVARG---NKWLNC 464
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,568,202
Number of extensions: 1399297
Number of successful extensions: 5468
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 5345
Number of HSP's successfully gapped: 27
Length of query: 336
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,901,872
Effective search space: 3472136176
Effective search space used: 3472136176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009370
(1008 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 585 e-164
>Sscrofa_Chr06
|| Length = 157765593
Score = 585 bits (295), Expect = e-164
Identities = 295/295 (100%)
Strand = Plus / Minus
Query: 520 ggtcacagctacttcttcaagggcgcgtattacctgaagttggagaaccaaagtctgaag 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27527293 ggtcacagctacttcttcaagggcgcgtattacctgaagttggagaaccaaagtctgaag 27527234
Query: 580 agcgtgaagttcggaagcatcaaatccgactggctgggctgctgagctggctccacctcc 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27527233 agcgtgaagttcggaagcatcaaatccgactggctgggctgctgagctggctccacctcc 27527174
Query: 640 cccagggcctgcctctccatcgccttctgcacaccgggccctgggtgccaggggaggacc 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27527173 cccagggcctgcctctccatcgccttctgcacaccgggccctgggtgccaggggaggacc 27527114
Query: 700 cggctggacctggcagccctcagctctgtagttaatcagccttctcacccccacctggta 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27527113 cggctggacctggcagccctcagctctgtagttaatcagccttctcacccccacctggta 27527054
Query: 760 atttaagaaaccgcagagtggctctgccctgtgctcacggaaaggtgctgatcgt 814
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27527053 atttaagaaaccgcagagtggctctgccctgtgctcacggaaaggtgctgatcgt 27526999
Score = 321 bits (162), Expect = 4e-85
Identities = 165/166 (99%)
Strand = Plus / Minus
Query: 248 cagggaatgagtactgggtctattcagccagcaccctggagagagggtaccccaagccgc 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27534966 cagggaatgagtactgggtctattcagccagcaccctggagagagggtaccccaagccgc 27534907
Query: 308 tgaccagcctggggcttccgcctgatgtccagaaagtggatgctgcctttaactggagca 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27534906 tgaccagcctggggcttccgcctgatgtccagaaagtggatgctgcctttaactggagca 27534847
Query: 368 agaacaagaagacatacatcttcgctggagacaagttctggaggta 413
||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 27534846 agaacaagaagacatacatcttcgctggagataagttctggaggta 27534801
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 113 ggttcatctggcggacagtgacaccacgtgacaagcccatggggcccctgctggtggcca 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27536334 ggttcatctggcggacagtgacaccacgtgacaagcccatggggcccctgctggtggcca 27536275
Query: 173 cattctggcctgagctcccggaaaagatcgatgctgtgtacgaggccccacaggaggaga 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27536274 cattctggcctgagctcccggaaaagatcgatgctgtgtacgaggccccacaggaggaga 27536215
Query: 233 aggctgtgttctttgcagg 251
|||||||||||||||||||
Sbjct: 27536214 aggctgtgttctttgcagg 27536196
Score = 262 bits (132), Expect = 3e-67
Identities = 135/136 (99%)
Strand = Plus / Minus
Query: 873 aagtgatgctttgatattccctatgcagctctgccttgggctgccctggtgctgccacac 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27526940 aagtgatgctttgatattccctatgcagctctgccttgggctgccctggtgctgccacac 27526881
Query: 933 tttaagctcttctccttccacaaccttctgtggcttacagcacccttggagccaaaagag 992
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27526880 tttaggctcttctccttccacaaccttctgtggcttacagcacccttggagccaaaagag 27526821
Query: 993 actgtctcgggagggc 1008
||||||||||||||||
Sbjct: 27526820 actgtctcgggagggc 27526805
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 409 aggtacaatgaagtgaagaagaagatggatcctggcttccccaagctcattgcagacgcc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27529257 aggtacaatgaagtgaagaagaagatggatcctggcttccccaagctcattgcagacgcc 27529198
Query: 469 tggaatgccatcccggataacctggacgccgtggtggacctgcagggcgggggt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27529197 tggaatgccatcccggataacctggacgccgtggtggacctgcagggcgggggt 27529144
Score = 206 bits (104), Expect = 2e-50
Identities = 114/116 (98%), Gaps = 1/116 (0%)
Strand = Plus / Minus
Query: 1 gggcaccggccc-acccccacgctgggtcctgtcactcccgagatctgcaaacaggacat 59
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27539316 gggcaccggccccacccccacgctgggtcctgtcactcccgagatctgcaaacaggacat 27539257
Query: 60 tgtcttcgatggcatctctcagatccgcggcgagatcttcttcttcaaggaccggt 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27539256 cgtcttcgatggcatctctcagatccgcggcgagatcttcttcttcaaggaccggt 27539201
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,462,330
Number of extensions: 194
Number of successful extensions: 194
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 6
Length of query: 1008
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 987
Effective length of database: 2,808,413,156
Effective search space: 2771903784972
Effective search space used: 2771903784972
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)