Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009389
(1246 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098947.1| protein GRINL1A [Bos taurus]. 448 e-126
>ref|NP_001098947.1| protein GRINL1A [Bos taurus].
Length = 333
Score = 448 bits (1152), Expect = e-126
Identities = 234/318 (73%), Positives = 251/318 (78%), Gaps = 1/318 (0%)
Frame = +3
Query: 159 GFEPQPPEDLGQRSLAELRETLKRQERLLRNVKFICKLPDKGRKIIDSVAKLKAAIEEHE 338
GFEPQ PEDLGQRSLAELRE LKRQERLLRNVKFICKLPDKG+KI D+V KLKAAI E E
Sbjct: 7 GFEPQTPEDLGQRSLAELREMLKRQERLLRNVKFICKLPDKGKKISDAVTKLKAAIAERE 66
Query: 339 EVRGGSDLFHPVNLDCKWRTKASTVVDVATDTAQNSDQILDTSSLVPGCSSIATLTSSQT 518
EVRG S+LF+PV+LDCK R KA VVD D AQNSDQILDTSS VPGCSS+A +TSSQT
Sbjct: 67 EVRGRSELFYPVSLDCKERQKAIAVVDGDRDKAQNSDQILDTSSPVPGCSSVANITSSQT 126
Query: 519 TS-QRGLVHPTHGGNAEAPEPEHSVSKCXXXXXXXXXXXXXXXXXXLPQHHIXXXXXXXX 695
TS Q+GL HPT GG+AEA E EH+VS+ LPQH
Sbjct: 127 TSRQQGLAHPTRGGDAEAAEAEHTVSEHPTSSSGAPAPSSSQASEGLPQHCALGQVEDHP 186
Query: 696 XXXENLFIDRLQRITITDPGEHHSEGNPSLENLTGLWRGPQKKPHYMEVLEMRAKNPLPL 875
+NLFIDRLQRITI DP EHHSEGN + ENL GLW GPQKKPHYMEVLEMRAKNP+P
Sbjct: 187 GSSDNLFIDRLQRITIADPTEHHSEGNRNPENLAGLWSGPQKKPHYMEVLEMRAKNPMPP 246
Query: 876 PHKFKTNVLPSQQHDSVSHCQGRGSPISSEERRRLDRKHLDDITAARLLPLHHMPTQLLS 1055
PHKFKTNVLPSQ DS S CQ RGSPISSEERRR DRKHLDDITAARLLPLHH+PTQLLS
Sbjct: 247 PHKFKTNVLPSQPRDSSSACQRRGSPISSEERRRRDRKHLDDITAARLLPLHHLPTQLLS 306
Query: 1056 IEESLALQKQQKQSYEEM 1109
IEESLALQ+QQKQSYEE+
Sbjct: 307 IEESLALQRQQKQSYEEI 324
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,478,393
Number of extensions: 1023420
Number of successful extensions: 3512
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3510
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 310
Effective length of database: 14,207,134
Effective search space: 4404211540
Effective search space used: 4404211540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009389
(1246 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535493.2| PREDICTED: similar to GRINL1A combined protein ... 124 2e-42
>ref|XP_535493.2| PREDICTED: similar to GRINL1A combined protein isoform 1 [Canis
familiaris].
Length = 584
Score = 124 bits (310), Expect(2) = 2e-42
Identities = 65/78 (83%), Positives = 70/78 (89%), Gaps = 2/78 (2%)
Frame = +3
Query: 900 LPSQQHD--SVSHCQGRGSPISSEERRRLDRKHLDDITAARLLPLHHMPTQLLSIEESLA 1073
LPSQ +D + SH Q RGSP+SSEERR D++HLDDITAARLLPLHHMPTQLLSIEESLA
Sbjct: 468 LPSQHNDESASSHWQRRGSPLSSEERRLRDKQHLDDITAARLLPLHHMPTQLLSIEESLA 527
Query: 1074 LQKQQKQSYEEMQAKLAA 1127
LQKQQKQSYEEMQAKLAA
Sbjct: 528 LQKQQKQSYEEMQAKLAA 545
Score = 68.6 bits (166), Expect(2) = 2e-42
Identities = 35/38 (92%), Positives = 35/38 (92%)
Frame = +2
Query: 1130 KLAERLNIKMQSYNPEGEPLRKYREVRDEDDHQSSDDE 1243
KLAERLNIKMQSYNPEGE RKYREVRDEDD QSSDDE
Sbjct: 547 KLAERLNIKMQSYNPEGETSRKYREVRDEDD-QSSDDE 583
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,307,544
Number of extensions: 1049050
Number of successful extensions: 3729
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3729
Number of HSP's successfully gapped: 2
Length of query: 415
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 310
Effective length of database: 15,374,224
Effective search space: 4766009440
Effective search space used: 4766009440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009389
(1246 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353387.1| PREDICTED: protein GRINL1A-like isoform 1 [S... 585 0.0
Alignment gi|XP_003353388.1| PREDICTED: protein GRINL1A-like isoform 2 [S... 277 1e-93
>ref|XP_003353387.1| PREDICTED: protein GRINL1A-like isoform 1 [Sus scrofa].
Length = 369
Score = 585 bits (1507), Expect(2) = 0.0
Identities = 293/323 (90%), Positives = 294/323 (91%)
Frame = +3
Query: 159 GFEPQPPEDLGQRSLAELRETLKRQERLLRNVKFICKLPDKGRKIIDSVAKLKAAIEEHE 338
GFEPQPPEDLGQRSLAELRETLKRQERLLRNVKFICKLPDKGRKIIDSVAKLKAAIEEHE
Sbjct: 7 GFEPQPPEDLGQRSLAELRETLKRQERLLRNVKFICKLPDKGRKIIDSVAKLKAAIEEHE 66
Query: 339 EVRGGSDLFHPVNLDCKWRTKASTVVDVATDTAQNSDQILDTSSLVPGCSSIATLTSSQT 518
EVRGGSDLFHPVNLDCKWRTKASTVVDVATDTAQNSDQILDTSSLVPGCSSIAT+TSSQT
Sbjct: 67 EVRGGSDLFHPVNLDCKWRTKASTVVDVATDTAQNSDQILDTSSLVPGCSSIATITSSQT 126
Query: 519 TSQRGLVHPTHGGNAEAPEPEHSVSKCXXXXXXXXXXXXXXXXXXLPQHHIXXXXXXXXX 698
TSQRGLVHPTHGGNAEAPEPEHSVSKC LPQHHI
Sbjct: 127 TSQRGLVHPTHGGNAEAPEPEHSVSKCPPSSSRAAVPSSSEASERLPQHHISSQVEDHSS 186
Query: 699 XXENLFIDRLQRITITDPGEHHSEGNPSLENLTGLWRGPQKKPHYMEVLEMRAKNPLPLP 878
ENLFIDRLQRITITDPGEHHSEGNPSLENLTGLWRGPQKKPHYMEVLEMRAKNPLPLP
Sbjct: 187 SSENLFIDRLQRITITDPGEHHSEGNPSLENLTGLWRGPQKKPHYMEVLEMRAKNPLPLP 246
Query: 879 HKFKTNVLPSQQHDSVSHCQGRGSPISSEERRRLDRKHLDDITAARLLPLHHMPTQLLSI 1058
HKFKTNVLPSQQHDSVSHCQGRGSPISSEERRRLDRKHLDDITAARLLPLHHMPTQLLSI
Sbjct: 247 HKFKTNVLPSQQHDSVSHCQGRGSPISSEERRRLDRKHLDDITAARLLPLHHMPTQLLSI 306
Query: 1059 EESLALQKQQKQSYEEMQAKLAA 1127
EESLALQKQQKQSYEEMQAKLAA
Sbjct: 307 EESLALQKQQKQSYEEMQAKLAA 329
Score = 85.1 bits (209), Expect(2) = 0.0
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +2
Query: 1130 KLAERLNIKMQSYNPEGEPLRKYREVRDEDDHQSSDDEC 1246
KLAERLNIKMQSYNPEGEPLRKYREVRDEDDHQSSDDEC
Sbjct: 331 KLAERLNIKMQSYNPEGEPLRKYREVRDEDDHQSSDDEC 369
>ref|XP_003353388.1| PREDICTED: protein GRINL1A-like isoform 2 [Sus scrofa].
Length = 212
Score = 277 bits (709), Expect(2) = 1e-93
Identities = 136/141 (96%), Positives = 137/141 (97%)
Frame = +3
Query: 705 ENLFIDRLQRITITDPGEHHSEGNPSLENLTGLWRGPQKKPHYMEVLEMRAKNPLPLPHK 884
E L + LQRITITDPGEHHSEGNPSLENLTGLWRGPQKKPHYMEVLEMRAKNPLPLPHK
Sbjct: 32 ERLLRNVLQRITITDPGEHHSEGNPSLENLTGLWRGPQKKPHYMEVLEMRAKNPLPLPHK 91
Query: 885 FKTNVLPSQQHDSVSHCQGRGSPISSEERRRLDRKHLDDITAARLLPLHHMPTQLLSIEE 1064
FKTNVLPSQQHDSVSHCQGRGSPISSEERRRLDRKHLDDITAARLLPLHHMPTQLLSIEE
Sbjct: 92 FKTNVLPSQQHDSVSHCQGRGSPISSEERRRLDRKHLDDITAARLLPLHHMPTQLLSIEE 151
Query: 1065 SLALQKQQKQSYEEMQAKLAA 1127
SLALQKQQKQSYEEMQAKLAA
Sbjct: 152 SLALQKQQKQSYEEMQAKLAA 172
Score = 85.1 bits (209), Expect(2) = 1e-93
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +2
Query: 1130 KLAERLNIKMQSYNPEGEPLRKYREVRDEDDHQSSDDEC 1246
KLAERLNIKMQSYNPEGEPLRKYREVRDEDDHQSSDDEC
Sbjct: 174 KLAERLNIKMQSYNPEGEPLRKYREVRDEDDHQSSDDEC 212
Score = 67.8 bits (164), Expect = 1e-11
Identities = 34/42 (80%), Positives = 35/42 (83%)
Frame = +3
Query: 159 GFEPQPPEDLGQRSLAELRETLKRQERLLRNVKFICKLPDKG 284
GFEPQPPEDLGQRSLAELRETLKRQERLLRNV + D G
Sbjct: 7 GFEPQPPEDLGQRSLAELRETLKRQERLLRNVLQRITITDPG 48
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,318,093
Number of extensions: 654009
Number of successful extensions: 2259
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2258
Number of HSP's successfully gapped: 5
Length of query: 415
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 314
Effective length of database: 8,829,335
Effective search space: 2772411190
Effective search space used: 2772411190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009389
(1246 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848717.1| protein GRINL1A isoform 1 [Mus musculus]. 361 e-111
Alignment gi|NP_001158265.1| protein GRINL1A isoform 2 [Mus musculus]. 225 5e-71
>ref|NP_848717.1| protein GRINL1A isoform 1 [Mus musculus].
Length = 366
Score = 361 bits (926), Expect(2) = e-111
Identities = 196/323 (60%), Positives = 228/323 (70%)
Frame = +3
Query: 159 GFEPQPPEDLGQRSLAELRETLKRQERLLRNVKFICKLPDKGRKIIDSVAKLKAAIEEHE 338
GFEP PEDLG++S AELRE L+RQERLLRN KFICKLPDKG+KI D+VAKLKAAI E E
Sbjct: 7 GFEPPAPEDLGRQSSAELRERLRRQERLLRNEKFICKLPDKGKKISDTVAKLKAAISERE 66
Query: 339 EVRGGSDLFHPVNLDCKWRTKASTVVDVATDTAQNSDQILDTSSLVPGCSSIATLTSSQT 518
EVRG S+LFHPV++DCK R KA+T D D AQ+SD +LDTSSL P CSSI +S T
Sbjct: 67 EVRGRSELFHPVSVDCKLRQKATTRADTDVDKAQSSDLMLDTSSLDPDCSSIDIKSSKST 126
Query: 519 TSQRGLVHPTHGGNAEAPEPEHSVSKCXXXXXXXXXXXXXXXXXXLPQHHIXXXXXXXXX 698
+ +G H TH GN E E ++V+ LPQH +
Sbjct: 127 SETQGPTHLTHRGNEETLEAGYTVNS-SPAAHIRARAPSSEVKEHLPQHSVSSQEEEISS 185
Query: 699 XXENLFIDRLQRITITDPGEHHSEGNPSLENLTGLWRGPQKKPHYMEVLEMRAKNPLPLP 878
++LFI +LQ+ITI D E SE N S EN L KKPHYM+VLEMRA+NP+P P
Sbjct: 186 SIDSLFITKLQKITIADQSE-PSEENTSTENFPELQSETPKKPHYMKVLEMRARNPVPPP 244
Query: 879 HKFKTNVLPSQQHDSVSHCQGRGSPISSEERRRLDRKHLDDITAARLLPLHHMPTQLLSI 1058
HKFKTNVLP+QQ DS SHCQ SP SSEE+RR R+HLDDITAARLLPLHH+P QLLSI
Sbjct: 245 HKFKTNVLPTQQSDSPSHCQRGQSPASSEEQRRRARQHLDDITAARLLPLHHLPAQLLSI 304
Query: 1059 EESLALQKQQKQSYEEMQAKLAA 1127
EESLALQ++QKQ+YEEMQAKLAA
Sbjct: 305 EESLALQREQKQNYEEMQAKLAA 327
Score = 62.0 bits (149), Expect(2) = e-111
Identities = 30/37 (81%), Positives = 32/37 (86%)
Frame = +2
Query: 1130 KLAERLNIKMQSYNPEGEPLRKYREVRDEDDHQSSDD 1240
KLAERLNIKMQSYNPEGE +YREVRDE D QSSD+
Sbjct: 329 KLAERLNIKMQSYNPEGESSGRYREVRDEADAQSSDE 365
>ref|NP_001158265.1| protein GRINL1A isoform 2 [Mus musculus].
Length = 262
Score = 225 bits (574), Expect(2) = 5e-71
Identities = 126/225 (56%), Positives = 148/225 (65%)
Frame = +3
Query: 453 ILDTSSLVPGCSSIATLTSSQTTSQRGLVHPTHGGNAEAPEPEHSVSKCXXXXXXXXXXX 632
+LDTSSL P CSSI +S T+ +G H TH GN E E ++V+
Sbjct: 1 MLDTSSLDPDCSSIDIKSSKSTSETQGPTHLTHRGNEETLEAGYTVNSSPAAHIRARAPS 60
Query: 633 XXXXXXXLPQHHIXXXXXXXXXXXENLFIDRLQRITITDPGEHHSEGNPSLENLTGLWRG 812
LPQH + ++LFI +LQ+ITI D E SE N S EN L
Sbjct: 61 SEVKEH-LPQHSVSSQEEEISSSIDSLFITKLQKITIADQSEP-SEENTSTENFPELQSE 118
Query: 813 PQKKPHYMEVLEMRAKNPLPLPHKFKTNVLPSQQHDSVSHCQGRGSPISSEERRRLDRKH 992
KKPHYM+VLEMRA+NP+P PHKFKTNVLP+QQ DS SHCQ SP SSEE+RR R+H
Sbjct: 119 TPKKPHYMKVLEMRARNPVPPPHKFKTNVLPTQQSDSPSHCQRGQSPASSEEQRRRARQH 178
Query: 993 LDDITAARLLPLHHMPTQLLSIEESLALQKQQKQSYEEMQAKLAA 1127
LDDITAARLLPLHH+P QLLSIEESLALQ++QKQ+YEEMQAKLAA
Sbjct: 179 LDDITAARLLPLHHLPAQLLSIEESLALQREQKQNYEEMQAKLAA 223
Score = 62.0 bits (149), Expect(2) = 5e-71
Identities = 30/37 (81%), Positives = 32/37 (86%)
Frame = +2
Query: 1130 KLAERLNIKMQSYNPEGEPLRKYREVRDEDDHQSSDD 1240
KLAERLNIKMQSYNPEGE +YREVRDE D QSSD+
Sbjct: 225 KLAERLNIKMQSYNPEGESSGRYREVRDEADAQSSDE 261
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,958,718
Number of extensions: 878977
Number of successful extensions: 2958
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2951
Number of HSP's successfully gapped: 4
Length of query: 415
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 311
Effective length of database: 12,493,815
Effective search space: 3885576465
Effective search space used: 3885576465
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009389
(1246 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056347.1| protein GRINL1A isoform 1 [Homo sapiens]. 410 e-114
Alignment gi|NP_001018112.1| protein GRINL1A isoform 2 [Homo sapiens]. 215 6e-56
Alignment gi|NP_001018100.1| GRINL1A combined protein isoform 1 [Homo sap... 132 5e-31
>ref|NP_056347.1| protein GRINL1A isoform 1 [Homo sapiens].
Length = 368
Score = 410 bits (1053), Expect = e-114
Identities = 221/341 (64%), Positives = 248/341 (72%)
Frame = +3
Query: 159 GFEPQPPEDLGQRSLAELRETLKRQERLLRNVKFICKLPDKGRKIIDSVAKLKAAIEEHE 338
GFEPQ PEDL QRSL ELRE LKRQERLLRN KFICKLPDKG+KI DS AKLKAAI E E
Sbjct: 7 GFEPQAPEDLAQRSLVELREMLKRQERLLRNEKFICKLPDKGKKIFDSFAKLKAAIAECE 66
Query: 339 EVRGGSDLFHPVNLDCKWRTKASTVVDVATDTAQNSDQILDTSSLVPGCSSIATLTSSQT 518
EVR S+LF+PV+LDCK R KA VDV TD AQNSD ILDTSSLVPGCSS+ + SSQT
Sbjct: 67 EVRRKSELFNPVSLDCKLRQKAIAEVDVGTDKAQNSDPILDTSSLVPGCSSVDNIKSSQT 126
Query: 519 TSQRGLVHPTHGGNAEAPEPEHSVSKCXXXXXXXXXXXXXXXXXXLPQHHIXXXXXXXXX 698
+ +GL PT G+ E E E++V+K P+H +
Sbjct: 127 SQNQGLGRPTLEGDEETSEVEYTVNKGPASSNRDRVPPSSEASEHHPRHRVSSQAEDTSS 186
Query: 699 XXENLFIDRLQRITITDPGEHHSEGNPSLENLTGLWRGPQKKPHYMEVLEMRAKNPLPLP 878
+NLFIDRLQRITI D GE SE N S +NLTGL G +KKPHYMEVLEMRAKNP+P
Sbjct: 187 SFDNLFIDRLQRITIADQGEQQSEENASTKNLTGLSSGTEKKPHYMEVLEMRAKNPVPQL 246
Query: 879 HKFKTNVLPSQQHDSVSHCQGRGSPISSEERRRLDRKHLDDITAARLLPLHHMPTQLLSI 1058
KFKTNVLP +Q+DS SHCQ GSPISSEERRR D++HLDDITAARLLPLHHMPTQLLSI
Sbjct: 247 RKFKTNVLPFRQNDSSSHCQKSGSPISSEERRRRDKQHLDDITAARLLPLHHMPTQLLSI 306
Query: 1059 EESLALQKQQKQSYEEMQAKLAASN*LKD*ILKCRAIIQKG 1181
EESLALQKQQKQ+YEEMQAKLAA + +K R+ +G
Sbjct: 307 EESLALQKQQKQNYEEMQAKLAAQKLAERLNIKMRSYNPEG 347
Score = 61.2 bits (147), Expect = 2e-09
Identities = 29/37 (78%), Positives = 32/37 (86%)
Frame = +2
Query: 1130 KLAERLNIKMQSYNPEGEPLRKYREVRDEDDHQSSDD 1240
KLAERLNIKM+SYNPEGE +YREVRDEDD SSD+
Sbjct: 331 KLAERLNIKMRSYNPEGESSGRYREVRDEDDDWSSDE 367
>ref|NP_001018112.1| protein GRINL1A isoform 2 [Homo sapiens].
Length = 211
Score = 215 bits (548), Expect = 6e-56
Identities = 113/159 (71%), Positives = 126/159 (79%)
Frame = +3
Query: 705 ENLFIDRLQRITITDPGEHHSEGNPSLENLTGLWRGPQKKPHYMEVLEMRAKNPLPLPHK 884
E L + LQRITI D GE SE N S +NLTGL G +KKPHYMEVLEMRAKNP+P K
Sbjct: 32 ERLLRNELQRITIADQGEQQSEENASTKNLTGLSSGTEKKPHYMEVLEMRAKNPVPQLRK 91
Query: 885 FKTNVLPSQQHDSVSHCQGRGSPISSEERRRLDRKHLDDITAARLLPLHHMPTQLLSIEE 1064
FKTNVLP +Q+DS SHCQ GSPISSEERRR D++HLDDITAARLLPLHHMPTQLLSIEE
Sbjct: 92 FKTNVLPFRQNDSSSHCQKSGSPISSEERRRRDKQHLDDITAARLLPLHHMPTQLLSIEE 151
Query: 1065 SLALQKQQKQSYEEMQAKLAASN*LKD*ILKCRAIIQKG 1181
SLALQKQQKQ+YEEMQAKLAA + +K R+ +G
Sbjct: 152 SLALQKQQKQNYEEMQAKLAAQKLAERLNIKMRSYNPEG 190
Score = 61.2 bits (147), Expect = 2e-09
Identities = 29/37 (78%), Positives = 32/37 (86%)
Frame = +2
Query: 1130 KLAERLNIKMQSYNPEGEPLRKYREVRDEDDHQSSDD 1240
KLAERLNIKM+SYNPEGE +YREVRDEDD SSD+
Sbjct: 174 KLAERLNIKMRSYNPEGESSGRYREVRDEDDDWSSDE 210
Score = 58.2 bits (139), Expect = 2e-08
Identities = 31/53 (58%), Positives = 35/53 (66%)
Frame = +3
Query: 159 GFEPQPPEDLGQRSLAELRETLKRQERLLRNVKFICKLPDKGRKIIDSVAKLK 317
GFEPQ PEDL QRSL ELRE LKRQERLLRN + D+G + + A K
Sbjct: 7 GFEPQAPEDLAQRSLVELREMLKRQERLLRNELQRITIADQGEQQSEENASTK 59
>ref|NP_001018100.1| GRINL1A combined protein isoform 1 [Homo sapiens].
Length = 550
Score = 132 bits (333), Expect = 5e-31
Identities = 69/94 (73%), Positives = 78/94 (82%)
Frame = +3
Query: 900 LPSQQHDSVSHCQGRGSPISSEERRRLDRKHLDDITAARLLPLHHMPTQLLSIEESLALQ 1079
LP +Q+DS SHCQ GSPISSEERRR D++HLDDITAARLLPLHHMPTQLLSIEESLALQ
Sbjct: 436 LPFRQNDSSSHCQKSGSPISSEERRRRDKQHLDDITAARLLPLHHMPTQLLSIEESLALQ 495
Query: 1080 KQQKQSYEEMQAKLAASN*LKD*ILKCRAIIQKG 1181
KQQKQ+YEEMQAKLAA + +K R+ +G
Sbjct: 496 KQQKQNYEEMQAKLAAQKLAERLNIKMRSYNPEG 529
Score = 61.2 bits (147), Expect = 2e-09
Identities = 29/37 (78%), Positives = 32/37 (86%)
Frame = +2
Query: 1130 KLAERLNIKMQSYNPEGEPLRKYREVRDEDDHQSSDD 1240
KLAERLNIKM+SYNPEGE +YREVRDEDD SSD+
Sbjct: 513 KLAERLNIKMRSYNPEGESSGRYREVRDEDDDWSSDE 549
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,567,637
Number of extensions: 1039570
Number of successful extensions: 3555
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3544
Number of HSP's successfully gapped: 7
Length of query: 415
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 310
Effective length of database: 14,835,944
Effective search space: 4599142640
Effective search space used: 4599142640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009389
(1246 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1263 0.0
Sscrofa_Chr16 1160 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 1263 bits (637), Expect = 0.0
Identities = 643/645 (99%)
Strand = Plus / Minus
Query: 254 aaaattcatttgcaaattgcccgacaaaggtagaaagatcatagactctgtcgccaaact 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126391661 aaaattcatttgcaaattgcccgacaaaggtagaaagatcatagactctgtcgccaaact 126391602
Query: 314 gaaagctgccattgaagaacatgaagaagttagagggggaagtgacctctttcatcccgt 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126391601 gaaagctgccattgaagaacatgaagaagttagagggggaagtgacctctttcatcccgt 126391542
Query: 374 taatttagactgtaagtggaggacaaaagcaagtacagttgttgatgtggcaacagatac 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126391541 taatttagactgtaagtggaggacaaaagcaagtacagttgttgatgtggcaacagatac 126391482
Query: 434 ggcccagaattctgaccagatacttgatacttcatcactagttcctggctgctcctctat 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126391481 ggcccagaattctgaccagatacttgatacttcatcactagttcctggctgctcctctat 126391422
Query: 494 agctacccttacgtcgtctcagacaacctcacagcggggcctggtccatcctactcatgg 553
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126391421 agctaccatcacgtcgtctcagacaacctcacagcggggcctggtccatcctactcatgg 126391362
Query: 554 aggcaatgctgaggcccctgagcccgaacactcagtgagcaagtgcccaccttccagcag 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126391361 aggcaatgctgaggcccctgagcccgaacactcagtgagcaagtgcccaccttccagcag 126391302
Query: 614 cagagccgctgtgccttcctcatctgaagccagtgagcgactccctcagcatcacatttc 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126391301 cagagccgctgtgccttcctcatctgaagccagtgagcgactccctcagcatcacatttc 126391242
Query: 674 aagtcaagtagaggatcattctagcagctcggagaacctgtttattgatagattgcaaag 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126391241 aagtcaagtagaggatcattctagcagctcggagaacctgtttattgatagattgcaaag 126391182
Query: 734 gatcactattacagaccctggtgaacatcactcagaaggaaacccgagtctggagaactt 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126391181 gatcactattacagaccctggtgaacatcactcagaaggaaacccgagtctggagaactt 126391122
Query: 794 gactggcctttggcgtgggccacagaagaagcctcattacatggaagtgttagaaatgcg 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126391121 gactggcctttggcgtgggccacagaagaagcctcattacatggaagtgttagaaatgcg 126391062
Query: 854 agcaaaaaatcctctgcccctaccacataaatttaaaaccaatgt 898
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126391061 agcaaaaaatcctctgcccctaccacataaatttaaaaccaatgt 126391017
Score = 502 bits (253), Expect = e-139
Identities = 253/253 (100%)
Strand = Plus / Minus
Query: 1 gaagaagccctgttcttccgggaaaatggcgactcccgctcattcgccggagtccctgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126393876 gaagaagccctgttcttccgggaaaatggcgactcccgctcattcgccggagtccctgcc 126393817
Query: 61 cgccgcggatccggcgcccgcagcgggagctgtcgcggacgtcgagtgcccgccgcctcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126393816 cgccgcggatccggcgcccgcagcgggagctgtcgcggacgtcgagtgcccgccgcctcg 126393757
Query: 121 ccagcctcagctcccgcagaatgtcctcgctgcctcgcggcttcgagccccaacctcccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126393756 ccagcctcagctcccgcagaatgtcctcgctgcctcgcggcttcgagccccaacctcccg 126393697
Query: 181 aggacttgggtcagcggagtttggcagagctgcgggaaacgttgaagcgccaggagagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126393696 aggacttgggtcagcggagtttggcagagctgcgggaaacgttgaagcgccaggagagac 126393637
Query: 241 ttttgcgcaacgt 253
|||||||||||||
Sbjct: 126393636 ttttgcgcaacgt 126393624
Score = 408 bits (206), Expect = e-111
Identities = 206/206 (100%)
Strand = Plus / Minus
Query: 899 attaccttcacaacagcatgattcagtaagtcattgtcaggggagagggtcccctatatc 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126388193 attaccttcacaacagcatgattcagtaagtcattgtcaggggagagggtcccctatatc 126388134
Query: 959 ctcagaagagaggcggcgcctggataggaagcatctggatgacatcacggcagctcggct 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126388133 ctcagaagagaggcggcgcctggataggaagcatctggatgacatcacggcagctcggct 126388074
Query: 1019 tctgccactacaccacatgcccacacagctgctctccatagaagagtcgttggcacttca 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126388073 tctgccactacaccacatgcccacacagctgctctccatagaagagtcgttggcacttca 126388014
Query: 1079 gaaacagcagaaacagagttatgagg 1104
||||||||||||||||||||||||||
Sbjct: 126388013 gaaacagcagaaacagagttatgagg 126387988
Score = 258 bits (130), Expect = 6e-66
Identities = 143/146 (97%), Gaps = 1/146 (0%)
Strand = Plus / Minus
Query: 1102 aggaaatgcaagccaagctcgcagcctcaaa-ttagctgaaagactgaatattaaaatgc 1160
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 126386289 aggaaatgcaagccaagctcgcagcccaaaaattagctgaaagactgaatattaaaatgc 126386230
Query: 1161 agagctataatccagaaggggagcctttgaggaaataccgagaagtaagggatgaagatg 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126386229 agagctataatccagaaggggagcctttgaggaaataccgagaagtaagggatgaagatg 126386170
Query: 1221 atcatcagtcttctgacgatgaatgc 1246
||||||||||||||||||||||||||
Sbjct: 126386169 atcatcagtcttctgacgatgaatgc 126386144
>Sscrofa_Chr16
|| Length = 86898991
Score = 1160 bits (585), Expect = 0.0
Identities = 815/889 (91%), Gaps = 2/889 (0%)
Strand = Plus / Minus
Query: 12 gttcttccgggaaaatggcgactcccgctcattcgccggagtccctgcccgccgcggatc 71
|||||||| ||||||||||||||||||||| || ||| ||||||| ||| ||||||||||
Sbjct: 37235672 gttcttccaggaaaatggcgactcccgctctttggccagagtccccgccggccgcggatc 37235613
Query: 72 cggcgcccgcagcgggagctgtcgcggacgtcgagtgcccgccgcctcgccagcctcagc 131
||||||| |||| |||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct: 37235612 cggcgcctgcagagggagccatcgcagacgtcgagtgcccgccgcctcgccagccacagc 37235553
Query: 132 tcccgcagaatgtcctcgctgcctcgcggcttcgagccccaacctcccgaggacttgggt 191
|| |||||||||||||||||||||||||||| ||||||||| | ||||||||||||||
Sbjct: 37235552 ccctgcagaatgtcctcgctgcctcgcggctttgagccccaagcccccgaggacttgggc 37235493
Query: 192 cagcggagtttggcagagctgcgggaaacgttgaag-cgccaggagagacttttgcgcaa 250
|||||||||||||||||||||| ||| ||||||||| ||||||| ||||||||||| |||
Sbjct: 37235492 cagcggagtttggcagagctgctggagacgttgaaggcgccaggtgagacttttgcacaa 37235433
Query: 251 cgtaaaattcatttgcaaattgcccgacaaaggtagaaagatcatagactctgtcgccaa 310
||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 37235432 tgtaaaattcatctgcaaattgcccgacaaaggtaaaaagatcatagactctgttgccaa 37235373
Query: 311 actgaaagctgccattgaagaacatgaagaagttagagggggaagtgacctctttcatcc 370
|||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 37235372 actgaaagttgccattgaagaacatgaagaagttagaggaggtagtgacctctttcatcc 37235313
Query: 371 cgttaatttagactgtaagtggaggacaaaagcaagtacag-ttgttgatgtggcaacag 429
|||| ||||||||||||| |||||||||||||| ||||| || ||||||||| ||||
Sbjct: 37235312 tgttagtttagactgtaagcagaggacaaaagcaattacaggttattgatgtggacacag 37235253
Query: 430 atacggcccagaattctgaccagatacttgatacttcatcactagttcctggctgctcct 489
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 37235252 atacagcccagaattctgaccagatacttggtacttcatcactagttcctggctgctcct 37235193
Query: 490 ctatagctacccttacgtcgtctcagacaacctcacagcggggcctggtccatcctactc 549
||||||||||| | || || ||||||||||||||||||| || |||||||||| ||||||
Sbjct: 37235192 ctatagctaccatcacctcatctcagacaacctcacagcaggacctggtccatgctactc 37235133
Query: 550 atggaggcaatgctgaggcccctgagcccgaacactcagtgagcaagtgcccaccttcca 609
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 37235132 ctggaggcaatgctgaggcccctgagcctgaacactcagtgagcaagtgcccaccttcca 37235073
Query: 610 gcagcagagccgctgtgccttcctcatctgaagccagtgagcgactccctcagcatcaca 669
|||| |||||||||||||||||| |||| |||||||||||| | ||||||||||||||||
Sbjct: 37235072 gcagtagagccgctgtgccttccgcatccgaagccagtgagtgcctccctcagcatcaca 37235013
Query: 670 tttcaagtcaagtagaggatcattctagcagctcggagaacctgtttattgatagattgc 729
|||||||||||| |||| ||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 37235012 tttcaagtcaagcagagaatcattctagcagcttggacaacctgtttattgatagattgc 37234953
Query: 730 aaaggatcactattacagaccctggtgaacatcactcagaaggaaacccgagtctggaga 789
||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| |||||
Sbjct: 37234952 aaaggatcactattacagaccctggtgaacaccactcggaaggaaacccaagtccggaga 37234893
Query: 790 acttgactggcctttggcgtgggccacagaagaagcctcattacatggaagtgttagaaa 849
| ||||||||||||||||||| | | |||||||||||||||||||||||||||| |||||
Sbjct: 37234892 atttgactggcctttggcgtgagtcgcagaagaagcctcattacatggaagtgtcagaaa 37234833
Query: 850 tgcgagcaaaaaatcctctgcccctaccacataaatttaaaaccaatgt 898
||| ||| ||| |||||||||| | |||||||||| |||||||||||||
Sbjct: 37234832 tgctagccaaagatcctctgcctccaccacataaagttaaaaccaatgt 37234784
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,830,859
Number of extensions: 185
Number of successful extensions: 185
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 5
Length of query: 1246
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1225
Effective length of database: 2,808,413,156
Effective search space: 3440306116100
Effective search space used: 3440306116100
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)