Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009395
(610 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001181993.1| hypothetical protein LOC768048 [Bos taurus]. 113 1e-25
>ref|NP_001181993.1| hypothetical protein LOC768048 [Bos taurus].
Length = 57
Score = 113 bits (283), Expect = 1e-25
Identities = 55/55 (100%), Positives = 55/55 (100%)
Frame = +2
Query: 119 MPTAKQLADIGYKTFSTSMMLLTVYGGYLCSVRAYHYFQRRSSRRQAAEEQKTSG 283
MPTAKQLADIGYKTFSTSMMLLTVYGGYLCSVRAYHYFQRRSSRRQAAEEQKTSG
Sbjct: 1 MPTAKQLADIGYKTFSTSMMLLTVYGGYLCSVRAYHYFQRRSSRRQAAEEQKTSG 55
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 18,327,902
Number of extensions: 497181
Number of successful extensions: 2079
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2065
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 17,681,374
Length adjustment: 97
Effective length of query: 106
Effective length of database: 14,471,838
Effective search space: 1534014828
Effective search space used: 1534014828
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009395
(610 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 18,600,742
Number of extensions: 424789
Number of successful extensions: 2037
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2027
Number of HSP's successfully gapped: 0
Length of query: 203
Length of database: 18,874,504
Length adjustment: 98
Effective length of query: 105
Effective length of database: 15,607,576
Effective search space: 1638795480
Effective search space used: 1638795480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009395
(610 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 12,527,537
Number of extensions: 438387
Number of successful extensions: 1354
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 1344
Number of HSP's successfully gapped: 0
Length of query: 203
Length of database: 11,343,932
Length adjustment: 94
Effective length of query: 109
Effective length of database: 9,003,614
Effective search space: 981393926
Effective search space used: 981393926
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009395
(610 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_899079.1| hypothetical protein LOC66379 [Mus musculus]. 102 2e-22
>ref|NP_899079.1| hypothetical protein LOC66379 [Mus musculus].
Length = 57
Score = 102 bits (254), Expect = 2e-22
Identities = 50/56 (89%), Positives = 52/56 (92%)
Frame = +2
Query: 119 MPTAKQLADIGYKTFSTSMMLLTVYGGYLCSVRAYHYFQRRSSRRQAAEEQKTSGV 286
MP+AKQLADIGYKTFS SMMLLTVYGGYLCSVRAY Y Q RS+RRQAAEEQKTSGV
Sbjct: 1 MPSAKQLADIGYKTFSASMMLLTVYGGYLCSVRAYRYLQLRSARRQAAEEQKTSGV 56
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 15,518,017
Number of extensions: 351976
Number of successful extensions: 1584
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1577
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 15,617,559
Length adjustment: 96
Effective length of query: 107
Effective length of database: 12,734,103
Effective search space: 1362549021
Effective search space used: 1362549021
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009395
(610 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_116290.1| hypothetical protein LOC84987 [Homo sapiens]. 103 9e-23
>ref|NP_116290.1| hypothetical protein LOC84987 [Homo sapiens].
Length = 57
Score = 103 bits (258), Expect = 9e-23
Identities = 49/56 (87%), Positives = 52/56 (92%)
Frame = +2
Query: 119 MPTAKQLADIGYKTFSTSMMLLTVYGGYLCSVRAYHYFQRRSSRRQAAEEQKTSGV 286
MPT KQLADIGYKTFSTSMMLLTVYGGYLCSVR YHYFQ R ++RQAAEEQKTSG+
Sbjct: 1 MPTGKQLADIGYKTFSTSMMLLTVYGGYLCSVRVYHYFQWRRAQRQAAEEQKTSGI 56
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 18,299,848
Number of extensions: 413881
Number of successful extensions: 1934
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1930
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 105
Effective length of database: 15,066,692
Effective search space: 1582002660
Effective search space used: 1582002660
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009395
(610 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 218 3e-54
>Sscrofa_Chr05
|| Length = 111506441
Score = 218 bits (110), Expect = 3e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 2 ggtttctgggccgttaccctcgctcgtctggtcgtgggcgcagcttccggctgcgttggg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16328964 ggtttctgggccgttaccctcgctcgtctggtcgtgggcgcagcttccggctgcgttggg 16328905
Query: 62 aggtcgtgcggctggaggactcgaacccagagggagcggcagcattcagg 111
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16328904 aggtcgtgcggctggaggactcgaacccagagggagcggcagcattcagg 16328855
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 13,840,648
Number of extensions: 243
Number of successful extensions: 243
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 589
Effective length of database: 2,808,413,156
Effective search space: 1654155348884
Effective search space used: 1654155348884
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)