Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009424
(955 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029728.1| probable low affinity copper uptake protein ... 177 2e-44
>ref|NP_001029728.1| probable low affinity copper uptake protein 2 [Bos taurus].
Length = 143
Score = 177 bits (448), Expect = 2e-44
Identities = 92/143 (64%), Positives = 101/143 (70%), Gaps = 1/143 (0%)
Frame = +1
Query: 112 MAMHFIFSDQAVLLFDFWSVHSPAGMAISXXXXXXXXXXYESLKVGKARLLLQALMSLST 291
MAMHFIFSD+AVLLFDFWSVHSP GMA+S YES+KVGKARLL QALM+LS
Sbjct: 1 MAMHFIFSDEAVLLFDFWSVHSPTGMALSVLVILLLAVLYESIKVGKARLLYQALMNLSI 60
Query: 292 PTRQQLIEET-XXXXXXXXXXXXRTHLRWFMCHFGQSLLHVAQVVIGYFMMLAVMSYNTW 468
PT QQLIE R+ LRWF+CHFGQSLLHVAQVV+GYF+MLAVMSYNTW
Sbjct: 61 PTSQQLIEAADQDSSSSDSLPVSRSPLRWFLCHFGQSLLHVAQVVVGYFVMLAVMSYNTW 120
Query: 469 IFFXXXXXXXXXXXXAYPLLNMT 537
IFF AYPLL+MT
Sbjct: 121 IFFGVVLGSGVGYYLAYPLLSMT 143
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,934,651
Number of extensions: 1097476
Number of successful extensions: 3590
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3587
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 216
Effective length of database: 14,306,398
Effective search space: 3090181968
Effective search space used: 3090181968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009424
(955 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855348.1| PREDICTED: similar to Probable low-affinity cop... 153 2e-37
>ref|XP_855348.1| PREDICTED: similar to Probable low-affinity copper uptake protein 2
(hCTR2) (Copper transporter 2) (Solute carrier family
31, member 2) [Canis familiaris].
Length = 140
Score = 153 bits (387), Expect = 2e-37
Identities = 78/139 (56%), Positives = 89/139 (64%)
Frame = +1
Query: 118 MHFIFSDQAVLLFDFWSVHSPAGMAISXXXXXXXXXXYESLKVGKARLLLQALMSLSTPT 297
MHFIFS++ VLLFDFWSVHSPAGMA+S YES+KVGKA+LL A++S+S P
Sbjct: 1 MHFIFSNEVVLLFDFWSVHSPAGMALSVLVVLFLAVLYESIKVGKAKLLYWAVVSMSIPA 60
Query: 298 RQQLIEETXXXXXXXXXXXXRTHLRWFMCHFGQSLLHVAQVVIGYFMMLAVMSYNTWIFF 477
Q E T LRW CHFGQS++HV QVVIGYFMMLAVMSYNTWIFF
Sbjct: 61 SQLTEETDQDSSGSDSPPVSTTRLRWLFCHFGQSVIHVLQVVIGYFMMLAVMSYNTWIFF 120
Query: 478 XXXXXXXXXXXXAYPLLNM 534
AYPLL+M
Sbjct: 121 GVILGSAVGYYLAYPLLSM 139
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,521,548
Number of extensions: 1128470
Number of successful extensions: 3850
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3843
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 215
Effective length of database: 15,440,896
Effective search space: 3319792640
Effective search space used: 3319792640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009424
(955 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122121.1| PREDICTED: probable low affinity copper upta... 208 4e-54
>ref|XP_003122121.1| PREDICTED: probable low affinity copper uptake protein 2-like [Sus
scrofa].
Length = 142
Score = 208 bits (529), Expect = 4e-54
Identities = 108/142 (76%), Positives = 108/142 (76%)
Frame = +1
Query: 112 MAMHFIFSDQAVLLFDFWSVHSPAGMAISXXXXXXXXXXYESLKVGKARLLLQALMSLST 291
MAMHFIFSDQAVLLFDFWSVHSPAGMAIS YESLKVGKARLLLQALMSLST
Sbjct: 1 MAMHFIFSDQAVLLFDFWSVHSPAGMAISVLVVLLLAVLYESLKVGKARLLLQALMSLST 60
Query: 292 PTRQQLIEETXXXXXXXXXXXXRTHLRWFMCHFGQSLLHVAQVVIGYFMMLAVMSYNTWI 471
PTRQQLIEET RTHLRWFMCHFGQSLLHVAQVVIGYFMMLAVMSYNTWI
Sbjct: 61 PTRQQLIEETDQDSSSDSLPDSRTHLRWFMCHFGQSLLHVAQVVIGYFMMLAVMSYNTWI 120
Query: 472 FFXXXXXXXXXXXXAYPLLNMT 537
FF AYPLLNMT
Sbjct: 121 FFGVVLGSGVGYYLAYPLLNMT 142
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,474,282
Number of extensions: 708309
Number of successful extensions: 2424
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2423
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 219
Effective length of database: 8,879,129
Effective search space: 1944529251
Effective search space used: 1944529251
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009424
(955 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079562.1| probable low affinity copper uptake protein 2 [... 151 8e-37
>ref|NP_079562.1| probable low affinity copper uptake protein 2 [Mus musculus].
Length = 143
Score = 151 bits (381), Expect = 8e-37
Identities = 79/143 (55%), Positives = 93/143 (65%), Gaps = 1/143 (0%)
Frame = +1
Query: 112 MAMHFIFSDQAVLLFDFWSVHSPAGMAISXXXXXXXXXXYESLKVGKARLLLQALMSL-S 288
M MHFIFSD+AVLLFDFW VHSP GMA+S YE +KVGKA+LL + L SL +
Sbjct: 1 MPMHFIFSDEAVLLFDFWRVHSPTGMALSVLVVLLLAVLYEGIKVGKAKLLHKTLESLPA 60
Query: 289 TPTRQQLIEETXXXXXXXXXXXXRTHLRWFMCHFGQSLLHVAQVVIGYFMMLAVMSYNTW 468
T ++Q ++ RT LRWF+C+FGQSL+HV QVVIGYF+MLAVMSYNTW
Sbjct: 61 TNSQQFILGPDQDSTGSRSTSDNRTRLRWFLCYFGQSLVHVIQVVIGYFVMLAVMSYNTW 120
Query: 469 IFFXXXXXXXXXXXXAYPLLNMT 537
IF AYPLLNMT
Sbjct: 121 IFLGVVLGSAVGYYLAYPLLNMT 143
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,727,219
Number of extensions: 915396
Number of successful extensions: 3057
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3039
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 217
Effective length of database: 12,583,923
Effective search space: 2730711291
Effective search space used: 2730711291
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009424
(955 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001851.1| probable low affinity copper uptake protein 2 [... 159 5e-39
>ref|NP_001851.1| probable low affinity copper uptake protein 2 [Homo sapiens].
Length = 143
Score = 159 bits (401), Expect = 5e-39
Identities = 83/141 (58%), Positives = 93/141 (65%), Gaps = 1/141 (0%)
Frame = +1
Query: 112 MAMHFIFSDQAVLLFDFWSVHSPAGMAISXXXXXXXXXXYESLKVGKARLLLQALMSLST 291
MAMHFIFSD AVLLFDFWSVHSPAGMA+S YE +KVGKA+LL Q L++L T
Sbjct: 1 MAMHFIFSDTAVLLFDFWSVHSPAGMALSVLVLLLLAVLYEGIKVGKAKLLNQVLVNLPT 60
Query: 292 PTRQQLIEET-XXXXXXXXXXXXRTHLRWFMCHFGQSLLHVAQVVIGYFMMLAVMSYNTW 468
QQ I ET RTH RW++CHFGQSL+HV QVVIGYF+MLAVMSYNTW
Sbjct: 61 SISQQTIAETDGDSAGSDSFPVGRTHHRWYLCHFGQSLIHVIQVVIGYFIMLAVMSYNTW 120
Query: 469 IFFXXXXXXXXXXXXAYPLLN 531
IF AYPLL+
Sbjct: 121 IFLGVVLGSAVGYYLAYPLLS 141
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,792,002
Number of extensions: 1107315
Number of successful extensions: 3594
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3586
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 215
Effective length of database: 14,901,872
Effective search space: 3203902480
Effective search space used: 3203902480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009424
(955 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1162 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 1162 bits (586), Expect = 0.0
Identities = 586/586 (100%)
Strand = Plus / Plus
Query: 370 aggtggttcatgtgtcactttggccagtctttactccacgtcgctcaggtggtcattggc 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284598279 aggtggttcatgtgtcactttggccagtctttactccacgtcgctcaggtggtcattggc 284598338
Query: 430 tacttcatgatgctggctgtgatgtcctacaacacgtggattttctttggcgtggtcctg 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284598339 tacttcatgatgctggctgtgatgtcctacaacacgtggattttctttggcgtggtcctg 284598398
Query: 490 ggctcaggtgtgggctactacctggcctacccacttctcaacatgacttagctcgtgagg 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284598399 ggctcaggtgtgggctactacctggcctacccacttctcaacatgacttagctcgtgagg 284598458
Query: 550 gctgtgcaggaactaagggctggagagagcaggggccccttccccaaacatttatcttcc 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284598459 gctgtgcaggaactaagggctggagagagcaggggccccttccccaaacatttatcttcc 284598518
Query: 610 agcctcatgtcttctgtctcttctgctggctagtctcacaccattctcagctcctgaaaa 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284598519 agcctcatgtcttctgtctcttctgctggctagtctcacaccattctcagctcctgaaaa 284598578
Query: 670 ctttcagctgaagccagcgcatgctccctggagttcagaggccattgcggctcctcagcc 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284598579 ctttcagctgaagccagcgcatgctccctggagttcagaggccattgcggctcctcagcc 284598638
Query: 730 ggcctgtagagagctcaggcatagtcagtctgtgccttaaaaaggctgctgtgaccagag 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284598639 ggcctgtagagagctcaggcatagtcagtctgtgccttaaaaaggctgctgtgaccagag 284598698
Query: 790 ggaggatggagagaccagaaccagggggcaggtttgctgagcccgtgaggacttatctga 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284598699 ggaggatggagagaccagaaccagggggcaggtttgctgagcccgtgaggacttatctga 284598758
Query: 850 cttaaaacttacgaatttccaaagatcaagacagggagatggttctgggtgatgaacctg 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284598759 cttaaaacttacgaatttccaaagatcaagacagggagatggttctgggtgatgaacctg 284598818
Query: 910 gatatcctctgctctcctgatctgtgccttatgcagaggagcacct 955
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284598819 gatatcctctgctctcctgatctgtgccttatgcagaggagcacct 284598864
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Plus
Query: 182 caggcatggccatttcggtgttggtggtcctgctcctggctgtgttgtatgaaagcctca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284596813 caggcatggccatttcggtgttggtggtcctgctcctggctgtgttgtatgaaagcctca 284596872
Query: 242 aggttggcaaagccaggctgctcctccaggccttgatgagcctgtccacacccaccaggc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284596873 aggttggcaaagccaggctgctcctccaggccttgatgagcctgtccacacccaccaggc 284596932
Query: 302 agcagctcatcgaagagacagaccaggattcaagttcagactcactcccagacagcagga 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284596933 agcagctcatcgaagagacagaccaggattcaagttcagactcactcccagacagcagga 284596992
Query: 362 cccatctcaggt 373
||||||||||||
Sbjct: 284596993 cccatctcaggt 284597004
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 1 cgtgaccacacggcttgggtagtgttcgcctcggcgaagggccggactcggagctcgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284589392 cgtgaccacacggcttgggtagtgttcgcctcggcgaagggccggactcggagctcgaga 284589451
Query: 61 ccccagcgagcggacgctgtcccggtgcctcgcagaaccagcgcgctcaccatggcg 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284589452 ccccagcgagcggacgctgtcccggtgcctcgcagaaccagcgcgctcaccatggcg 284589508
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 117 gatgcatttcatcttctcggatcaggcagtgctgctctttgatttctggagtgtccacag 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284594225 gatgcatttcatcttctcggatcaggcagtgctgctctttgatttctggagtgtccacag 284594284
Query: 177 tcctgcagg 185
|||||||||
Sbjct: 284594285 tcctgcagg 284594293
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,458,880
Number of extensions: 185
Number of successful extensions: 185
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 4
Length of query: 955
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 934
Effective length of database: 2,808,413,156
Effective search space: 2623057887704
Effective search space used: 2623057887704
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)