Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009439
(982 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002686394.1| PREDICTED: cytochrome P450, family 2, subfam... 463 e-130
Alignment gi|XP_609410.3| PREDICTED: cytochrome P450, family 2, subfamily... 462 e-130
Alignment gi|XP_002686393.1| PREDICTED: similar to cytochrome P450 isofor... 457 e-129
Alignment gi|NP_001033640.1| cytochrome P450, family 2, subfamily J, poly... 432 e-121
Alignment gi|XP_002707855.1| PREDICTED: cytochrome P450, family 2, subfam... 432 e-121
Alignment gi|XP_587546.3| PREDICTED: cytochrome P450, family 2, subfamily... 432 e-121
Alignment gi|XP_589364.4| PREDICTED: similar to cytochrome P450 isoform 2... 378 e-105
Alignment gi|XP_001788183.1| PREDICTED: cytochrome P450, family 2, subfam... 222 3e-58
Alignment gi|NP_001068988.1| cytochrome P450, family 2, subfamily c [Bos ... 205 4e-53
Alignment gi|XP_002695109.1| PREDICTED: cytochrome P450, family 2, subfam... 197 2e-50
>ref|XP_002686394.1| PREDICTED: cytochrome P450, family 2, subfamily J-like [Bos
taurus].
Length = 502
Score = 463 bits (1191), Expect = e-130
Identities = 227/299 (75%), Positives = 245/299 (81%)
Frame = +1
Query: 82 MTPALGFLAEALWTALRPSTXXXXXXXXXXXXXXXKRRSPKNYPPGPPRLPFLGNFFHLD 261
M ALG LA ALW ALRP T RR PKNYPPGPPRLPF+GNFF LD
Sbjct: 1 MLEALGSLAAALWAALRPGTVLLGAIVFLLLTDLLNRRRPKNYPPGPPRLPFVGNFFQLD 60
Query: 262 VEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVHQDQHFANRPMIPTQERV 441
E+GHL+LQRFVKKYGN+ SL+ SVVITGLPLIKE V+QDQ+F NRP+ P +ERV
Sbjct: 61 FEQGHLSLQRFVKKYGNLFSLEFGDLPSVVITGLPLIKEVLVYQDQNFVNRPISPIRERV 120
Query: 442 FKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEAQYLIQAIGEENGQPFNP 621
FKKNGLIMSNG +WKEQRRF+LT LRNFGLG+KSLEERIQEE YLIQAIGEE GQPFNP
Sbjct: 121 FKKNGLIMSNGHIWKEQRRFSLTALRNFGLGRKSLEERIQEEVAYLIQAIGEEKGQPFNP 180
Query: 622 HFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHTSVQVQLYNMFPRIMKFL 801
HFKINNAVSNIICSITFG+RFDYQDDQFQELLRLLDEVT T+V QLYN+FPRIM FL
Sbjct: 181 HFKINNAVSNIICSITFGERFDYQDDQFQELLRLLDEVTYLETTVWCQLYNVFPRIMNFL 240
Query: 802 PGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLPEIEKHKGNATSSFQEK 978
PGPHQ LFSNW KL++FVA VIENHKRDWNPAEARDFIDAYL E EKHKGNA SSF E+
Sbjct: 241 PGPHQMLFSNWRKLKMFVARVIENHKRDWNPAEARDFIDAYLQETEKHKGNAASSFHEE 299
>ref|XP_609410.3| PREDICTED: cytochrome P450, family 2, subfamily J-like [Bos
taurus].
Length = 502
Score = 462 bits (1190), Expect = e-130
Identities = 227/299 (75%), Positives = 245/299 (81%)
Frame = +1
Query: 82 MTPALGFLAEALWTALRPSTXXXXXXXXXXXXXXXKRRSPKNYPPGPPRLPFLGNFFHLD 261
M ALG LA ALW ALRP T RR PKNYPPGPPRLPF+GNFF LD
Sbjct: 1 MLEALGSLAAALWPALRPGTVLLGAIVFLLLTDLLNRRRPKNYPPGPPRLPFVGNFFQLD 60
Query: 262 VEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVHQDQHFANRPMIPTQERV 441
E+GHL+LQRFVKKYGN+ SL+ SVVITGLPLIKE V+QDQ+F NRP+ P +ERV
Sbjct: 61 FEQGHLSLQRFVKKYGNLFSLEFGDLPSVVITGLPLIKEVLVYQDQNFVNRPISPIRERV 120
Query: 442 FKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEAQYLIQAIGEENGQPFNP 621
FKKNGLIMSNG +WKEQRRF+LT LRNFGLG+KSLEERIQEE YLIQAIGEE GQPFNP
Sbjct: 121 FKKNGLIMSNGHIWKEQRRFSLTALRNFGLGRKSLEERIQEEVAYLIQAIGEEKGQPFNP 180
Query: 622 HFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHTSVQVQLYNMFPRIMKFL 801
HFKINNAVSNIICSITFG+RFDYQDDQFQELLRLLDEVT T+V QLYN+FPRIM FL
Sbjct: 181 HFKINNAVSNIICSITFGERFDYQDDQFQELLRLLDEVTYLETTVWCQLYNVFPRIMNFL 240
Query: 802 PGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLPEIEKHKGNATSSFQEK 978
PGPHQ LFSNW KL++FVA VIENHKRDWNPAEARDFIDAYL E EKHKGNA SSF E+
Sbjct: 241 PGPHQMLFSNWRKLKMFVARVIENHKRDWNPAEARDFIDAYLQETEKHKGNAASSFHEE 299
>ref|XP_002686393.1| PREDICTED: similar to cytochrome P450 isoform 2J [Bos taurus].
Length = 502
Score = 457 bits (1176), Expect = e-129
Identities = 222/299 (74%), Positives = 243/299 (81%)
Frame = +1
Query: 82 MTPALGFLAEALWTALRPSTXXXXXXXXXXXXXXXKRRSPKNYPPGPPRLPFLGNFFHLD 261
M ALG LA ALW ALRP T KRR PKNYPPGPP LPF+GNFF LD
Sbjct: 1 MLEALGSLAAALWAALRPGTVLLGAVVFLFLDDFLKRRRPKNYPPGPPPLPFVGNFFQLD 60
Query: 262 VEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVHQDQHFANRPMIPTQERV 441
+K HL+LQRFVKKYGN+ S+D +F SV+ITGLPLIKEA VHQDQ+FANRP+IP ++R+
Sbjct: 61 FDKAHLSLQRFVKKYGNVFSVDFGIFRSVLITGLPLIKEALVHQDQNFANRPLIPIEKRI 120
Query: 442 FKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEAQYLIQAIGEENGQPFNP 621
F GLIMSNG VWKEQRRFALTTLRNFGLGKKSLEERIQEEA YLIQ IGEENGQPF+P
Sbjct: 121 FNNKGLIMSNGHVWKEQRRFALTTLRNFGLGKKSLEERIQEEAAYLIQEIGEENGQPFDP 180
Query: 622 HFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHTSVQVQLYNMFPRIMKFL 801
HF INNAVSNIICSITFG+RFDYQDDQFQELLRL DE+ TS QLYN+FPRIM FL
Sbjct: 181 HFTINNAVSNIICSITFGERFDYQDDQFQELLRLFDEMMHLRTSTCCQLYNIFPRIMSFL 240
Query: 802 PGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLPEIEKHKGNATSSFQEK 978
PGP LFS WEKL++F+A V+ENHKRDWNPAEARDFIDAYL EIEKHKGNATS F E+
Sbjct: 241 PGPQHALFSKWEKLKMFIAGVVENHKRDWNPAEARDFIDAYLQEIEKHKGNATSCFHEE 299
>ref|NP_001033640.1| cytochrome P450, family 2, subfamily J, polypeptide 2 [Bos taurus].
Length = 502
Score = 432 bits (1111), Expect = e-121
Identities = 212/299 (70%), Positives = 235/299 (78%)
Frame = +1
Query: 82 MTPALGFLAEALWTALRPSTXXXXXXXXXXXXXXXKRRSPKNYPPGPPRLPFLGNFFHLD 261
M ALG L ALWT LRP KR+ PKNYPPGP RLPF+GNFFHLD
Sbjct: 1 MLEALGSLVAALWTTLRPGIVLLGAFVFLLFADFLKRQHPKNYPPGPLRLPFIGNFFHLD 60
Query: 262 VEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVHQDQHFANRPMIPTQERV 441
+ KG L Q+ VKKYGNII L+ V +VITGLP IKEA V+Q+Q+F NRPMIP Q+ +
Sbjct: 61 LGKGILVPQQVVKKYGNIIRLNFGVIHFIVITGLPYIKEALVNQEQNFVNRPMIPLQKHI 120
Query: 442 FKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEAQYLIQAIGEENGQPFNP 621
F GL+ SNGQVWKEQRRF LTTLRNFGLG+KSLEERIQEE YLIQAIGEENGQPF+P
Sbjct: 121 FNNKGLVRSNGQVWKEQRRFTLTTLRNFGLGRKSLEERIQEEVTYLIQAIGEENGQPFDP 180
Query: 622 HFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHTSVQVQLYNMFPRIMKFL 801
HF INNAVSNIICSITFG+RFDY+DDQFQELLRLLDE+ C SV QLYN FPRIM FL
Sbjct: 181 HFIINNAVSNIICSITFGERFDYKDDQFQELLRLLDEILCIQASVCCQLYNAFPRIMNFL 240
Query: 802 PGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLPEIEKHKGNATSSFQEK 978
PG H TLF WEKL++FVA VIENH++DWNPAEARDFIDAYL EIEKHKGNATSSF ++
Sbjct: 241 PGSHHTLFRKWEKLKMFVANVIENHRKDWNPAEARDFIDAYLQEIEKHKGNATSSFDDE 299
>ref|XP_002707855.1| PREDICTED: cytochrome P450, family 2, subfamily J, polypeptide
2-like [Bos taurus].
Length = 502
Score = 432 bits (1111), Expect = e-121
Identities = 215/299 (71%), Positives = 237/299 (79%)
Frame = +1
Query: 82 MTPALGFLAEALWTALRPSTXXXXXXXXXXXXXXXKRRSPKNYPPGPPRLPFLGNFFHLD 261
M AL LA ALW ALRP T KRR PKNYPPGPP LPF+GN F LD
Sbjct: 1 MLEALSSLATALWAALRPDTXLLGTLAFLLFVDFLKRRHPKNYPPGPPGLPFVGNLFQLD 60
Query: 262 VEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVHQDQHFANRPMIPTQERV 441
EK L L +FVKKYGN+ SLD SV+ITGLPLIKE VHQ Q F+NRP++P QE +
Sbjct: 61 PEKVPLVLHQFVKKYGNVFSLDFGTVPSVLITGLPLIKEVLVHQGQIFSNRPIVPLQEHI 120
Query: 442 FKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEAQYLIQAIGEENGQPFNP 621
GLIMS+GQ+WKEQRRFALTTLRNFGLGKKSLEERIQEEA YLIQ I EENGQPF+P
Sbjct: 121 INNKGLIMSSGQLWKEQRRFALTTLRNFGLGKKSLEERIQEEASYLIQTIREENGQPFDP 180
Query: 622 HFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHTSVQVQLYNMFPRIMKFL 801
H INNAVSNIICSITFG+RFDYQDDQFQELLR+LDE+ TS+ QLYN+FPRIM FL
Sbjct: 181 HLTINNAVSNIICSITFGERFDYQDDQFQELLRMLDEILNLQTSMCCQLYNVFPRIMNFL 240
Query: 802 PGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLPEIEKHKGNATSSFQEK 978
PGPHQ LFSN EK+++FVA +IENHKRDWNPAEARDFIDAYL EIEKHKG+ATSSFQE+
Sbjct: 241 PGPHQALFSNMEKMKMFVARMIENHKRDWNPAEARDFIDAYLQEIEKHKGDATSSFQEE 299
>ref|XP_587546.3| PREDICTED: cytochrome P450, family 2, subfamily J, polypeptide
2-like [Bos taurus].
Length = 502
Score = 432 bits (1111), Expect = e-121
Identities = 214/299 (71%), Positives = 236/299 (78%)
Frame = +1
Query: 82 MTPALGFLAEALWTALRPSTXXXXXXXXXXXXXXXKRRSPKNYPPGPPRLPFLGNFFHLD 261
M AL LA ALW ALRP T KRR PKNYPPGPP LPF+GN F LD
Sbjct: 1 MLEALSSLATALWAALRPDTVLLGTLAFLLFVDFLKRRHPKNYPPGPPGLPFVGNLFQLD 60
Query: 262 VEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVHQDQHFANRPMIPTQERV 441
EK L L +FVKKYGN+ SLD SV+ITGLPLIKE VHQ Q F+NRP++P QE +
Sbjct: 61 PEKVPLVLHQFVKKYGNVFSLDFGTVPSVLITGLPLIKEVLVHQGQIFSNRPIVPLQEHI 120
Query: 442 FKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEAQYLIQAIGEENGQPFNP 621
GLIMS+GQ+WKEQRRFALTTLRNFGLGKKSLEERIQEEA YLIQ I EENGQPF+P
Sbjct: 121 INNKGLIMSSGQLWKEQRRFALTTLRNFGLGKKSLEERIQEEASYLIQTIREENGQPFDP 180
Query: 622 HFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHTSVQVQLYNMFPRIMKFL 801
H INNAVSNIICSITFG+RFDYQDDQFQELLR+LDE+ TS+ QLYN+FPRIM FL
Sbjct: 181 HLTINNAVSNIICSITFGERFDYQDDQFQELLRMLDEILNLQTSMCCQLYNVFPRIMNFL 240
Query: 802 PGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLPEIEKHKGNATSSFQEK 978
PGPHQ LFSN EK+++FVA +IENHKRDWNPAEARDFIDAYL EIEKHKG+ATSSFQE+
Sbjct: 241 PGPHQALFSNMEKMKMFVARMIENHKRDWNPAEARDFIDAYLQEIEKHKGDATSSFQEE 299
>ref|XP_589364.4| PREDICTED: similar to cytochrome P450 isoform 2J isoform 1, partial
[Bos taurus].
Length = 447
Score = 378 bits (970), Expect = e-105
Identities = 181/230 (78%), Positives = 200/230 (86%)
Frame = +1
Query: 289 RFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVHQDQHFANRPMIPTQERVFKKNGLIMS 468
+FVKKYGN+ S+D +F SV+ITGLPLIKEA VHQDQ+FANRP+IP ++R+F GLIMS
Sbjct: 15 QFVKKYGNVFSVDFGIFRSVLITGLPLIKEALVHQDQNFANRPLIPIEKRIFNNKGLIMS 74
Query: 469 NGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEAQYLIQAIGEENGQPFNPHFKINNAVS 648
NG VWKEQRRFALTTLRNFGLGKKSLEERIQEEA YLIQ IGEENGQPF+PHF INNAVS
Sbjct: 75 NGHVWKEQRRFALTTLRNFGLGKKSLEERIQEEAAYLIQEIGEENGQPFDPHFTINNAVS 134
Query: 649 NIICSITFGKRFDYQDDQFQELLRLLDEVTCQHTSVQVQLYNMFPRIMKFLPGPHQTLFS 828
NIICSITFG+RFDYQDDQFQELLRL DE+ TS QLYN+FPRIM FLPGP LFS
Sbjct: 135 NIICSITFGERFDYQDDQFQELLRLFDEMMHLRTSTCCQLYNIFPRIMSFLPGPQHALFS 194
Query: 829 NWEKLQIFVACVIENHKRDWNPAEARDFIDAYLPEIEKHKGNATSSFQEK 978
WEKL++F+A V+ENHKRDWNPAEARDFIDAYL EIEKHKGNATS F E+
Sbjct: 195 KWEKLKMFIAGVVENHKRDWNPAEARDFIDAYLQEIEKHKGNATSCFHEE 244
>ref|XP_001788183.1| PREDICTED: cytochrome P450, family 2, subfamily J-like [Bos
taurus].
Length = 358
Score = 222 bits (566), Expect = 3e-58
Identities = 118/175 (67%), Positives = 134/175 (76%)
Frame = +1
Query: 454 GLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEAQYLIQAIGEENGQPFNPHFKI 633
GLIMS+G +WKEQRRFALTTLRNFGLGKKSLEERIQEEA YLIQ I EENG+
Sbjct: 2 GLIMSSGHIWKEQRRFALTTLRNFGLGKKSLEERIQEEASYLIQMIREENGE-------- 53
Query: 634 NNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHTSVQVQLYNMFPRIMKFLPGPH 813
++I + Q QF+ELLRLLDEV HTS+ QLY++FPRIM F+PGPH
Sbjct: 54 -----HVIGQV--------QGLQFRELLRLLDEVLNLHTSLCCQLYSVFPRIMNFVPGPH 100
Query: 814 QTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLPEIEKHKGNATSSFQEK 978
QTLFSN EKL++FVA +IENHKRDWNPAEARDFIDAYL EIEKHKG SSF+E+
Sbjct: 101 QTLFSNLEKLKMFVAEMIENHKRDWNPAEARDFIDAYLQEIEKHKGGDASSFREE 155
>ref|NP_001068988.1| cytochrome P450, family 2, subfamily c [Bos taurus].
Length = 495
Score = 205 bits (522), Expect = 4e-53
Identities = 103/253 (40%), Positives = 152/253 (60%)
Frame = +1
Query: 211 PPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVH 390
PPGP LP +GN L+++ +L + K+YG + +L ++VV+ G ++KEA +
Sbjct: 35 PPGPTPLPIIGNLMQLNLKDIPASLSKLAKQYGPVYTLHLGSQTTVVLHGYEVVKEALID 94
Query: 391 QDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEA 570
Q F R P + + GLI SNG WK+ RRF+L TLRNFG+GK+SLEERIQEEA
Sbjct: 95 QGDEFLGRAHFPIIDDTQRGYGLIFSNGDTWKQMRRFSLMTLRNFGMGKRSLEERIQEEA 154
Query: 571 QYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHT 750
Q+L++ + QPFNP ++ A NIICSI F +RF YQD LL LL+E + +
Sbjct: 155 QFLVEEFRKSEAQPFNPAVTLSCATCNIICSILFNERFHYQDKTLHSLLDLLNENFNRIS 214
Query: 751 SVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLP 930
S+ Q+YN++P+++K LPG H+ + + FV ++ H++ N RD+ID +L
Sbjct: 215 SLWNQIYNLWPKLIKPLPGEHRAFSKRLKDVHYFVLEKVKEHQKSLNHNNPRDYIDCFLS 274
Query: 931 EIEKHKGNATSSF 969
+E+ K N S F
Sbjct: 275 RMEQEKQNPESQF 287
>ref|XP_002695109.1| PREDICTED: cytochrome P450, family 2, subfamily A, polypeptide
13-like [Bos taurus].
Length = 494
Score = 197 bits (500), Expect = 2e-50
Identities = 105/257 (40%), Positives = 157/257 (61%), Gaps = 1/257 (0%)
Frame = +1
Query: 211 PPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVH 390
PPGP LPF+GN+ L+ E+ +L + + YG + ++ VV+ G +KEA V
Sbjct: 34 PPGPTPLPFIGNYLQLNTEQMCNSLMKISEHYGPVFTVHLGTRQIVVLCGYDAVKEALVD 93
Query: 391 QDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEA 570
Q + F+ R T + +FK G+ SNG+ K+ RRF++TTLR+FG+GK+ +EERIQEEA
Sbjct: 94 QAEEFSGRGKQATFDWLFKGYGVAFSNGERAKQLRRFSITTLRDFGVGKRGIEERIQEEA 153
Query: 571 QYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHT 750
+LI+A G +P F ++ VSN+I SI FG RFDY+D +F LLR++ + Q T
Sbjct: 154 GFLIEAFRGTRGAFIDPTFFLSRTVSNVISSIVFGDRFDYEDKEFLSLLRMM-LGSFQFT 212
Query: 751 SVQV-QLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYL 927
+ QLY MF +MK+LPGP Q F + L+ F+A +E ++R +P RDFID++L
Sbjct: 213 ATSTGQLYEMFYSVMKYLPGPQQQAFKELQGLEDFIAKKVEQNQRTLDPNSPRDFIDSFL 272
Query: 928 PEIEKHKGNATSSFQEK 978
+++ K N + F K
Sbjct: 273 IRMQEEKENPNTEFYRK 289
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,095,133
Number of extensions: 1063458
Number of successful extensions: 4080
Number of sequences better than 1.0e-05: 54
Number of HSP's gapped: 4048
Number of HSP's successfully gapped: 55
Length of query: 327
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 224
Effective length of database: 14,273,310
Effective search space: 3197221440
Effective search space used: 3197221440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009439
(982 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852725.1| PREDICTED: similar to cytochrome P450, family 2... 426 e-119
Alignment gi|NP_001006653.1| cytochrome P450 2B11 [Canis lupus familiaris]. 201 7e-52
Alignment gi|XP_855605.1| PREDICTED: cytochrome P450 2B11 [Canis familiar... 201 7e-52
Alignment gi|XP_855301.1| PREDICTED: similar to cytochrome P450, family 2... 197 1e-50
Alignment gi|NP_001183973.1| cytochrome P450 2C21 [Canis lupus familiaris]. 197 2e-50
Alignment gi|XP_533661.2| PREDICTED: similar to cytochrome P450 monooxyge... 196 3e-50
Alignment gi|NP_001032422.1| cytochrome P450 family 2 subfamily A polypep... 194 8e-50
Alignment gi|XP_541606.2| PREDICTED: similar to Cytochrome P450 2G1 (CYPI... 192 4e-49
Alignment gi|XP_852606.1| PREDICTED: similar to cytochrome P450, family 2... 191 7e-49
Alignment gi|NP_001041492.1| hypothetical protein LOC484493 [Canis lupus ... 189 3e-48
>ref|XP_852725.1| PREDICTED: similar to cytochrome P450, family 2, subfamily J,
polypeptide 2 [Canis familiaris].
Length = 502
Score = 426 bits (1095), Expect = e-119
Identities = 205/299 (68%), Positives = 238/299 (79%)
Frame = +1
Query: 82 MTPALGFLAEALWTALRPSTXXXXXXXXXXXXXXXKRRSPKNYPPGPPRLPFLGNFFHLD 261
M A+G LA LW L T KRR PKNYPPGP LPF+GNFFHLD
Sbjct: 1 MLAAVGSLAATLWAVLHLRTLLLGAVAFLFFADFLKRRRPKNYPPGPVPLPFVGNFFHLD 60
Query: 262 VEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVHQDQHFANRPMIPTQERV 441
E+ HL LQRFVKKYGN+ S+ VV+TGLPLIKE V Q+Q F NRP+ P +ERV
Sbjct: 61 FEQSHLKLQRFVKKYGNVFSVQMGDMPLVVVTGLPLIKEVLVDQNQVFVNRPITPIRERV 120
Query: 442 FKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEAQYLIQAIGEENGQPFNP 621
FK +GLIMS+GQ+WKEQRRF L TL+NFGLG+KS+EERIQEEA +LIQAI EENGQPFNP
Sbjct: 121 FKNSGLIMSSGQIWKEQRRFTLATLKNFGLGRKSIEERIQEEAHHLIQAIEEENGQPFNP 180
Query: 622 HFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHTSVQVQLYNMFPRIMKFL 801
HFKINNAVSNIICSITFGKRF+YQD+QFQELLRLLDEVTC TS++ QLYN+FP I+KFL
Sbjct: 181 HFKINNAVSNIICSITFGKRFEYQDEQFQELLRLLDEVTCLETSMRCQLYNVFPWIIKFL 240
Query: 802 PGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLPEIEKHKGNATSSFQEK 978
PGPHQ LF++WEKL++F+A + ENH+RDWNPAE RDFIDAYL E+EK++GNATSSF E+
Sbjct: 241 PGPHQKLFNDWEKLKLFIAHMTENHRRDWNPAEPRDFIDAYLKEMEKNRGNATSSFHEE 299
>ref|NP_001006653.1| cytochrome P450 2B11 [Canis lupus familiaris].
Length = 494
Score = 201 bits (512), Expect = 7e-52
Identities = 104/267 (38%), Positives = 164/267 (61%), Gaps = 4/267 (1%)
Frame = +1
Query: 190 RRSPKNY---PPGPPRLPFLGNFFHLDVEKGHL-ALQRFVKKYGNIISLDSSVFSSVVIT 357
R PK Y PPGP LP LGNF +D KG L + R +KYG++ ++ +V++
Sbjct: 21 RGHPKAYGHLPPGPRPLPILGNFLQMD-RKGLLKSFLRLQEKYGDVFTVYLGPRRTVMLC 79
Query: 358 GLPLIKEAFVHQDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGK 537
G+ I+EA V + F+ R I E VF+ G++ +NG+ WK RRF+L T+R+FG+GK
Sbjct: 80 GIDAIREALVDNAEAFSGRGKIAVVEPVFQGYGVVFANGERWKTLRRFSLATMRDFGMGK 139
Query: 538 KSLEERIQEEAQYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELL 717
+S+EERIQEEAQ L++ + + G +P F ++ +NIICSI FGKRF Y+D +F L+
Sbjct: 140 RSVEERIQEEAQCLVEELRKTEGVLQDPTFFFHSMTANIICSIVFGKRFGYKDPEFLRLM 199
Query: 718 RLLDEVTCQHTSVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPA 897
L +S Q++ +F +K+ PG H+ +++N ++++ F+A ++E H+ +P+
Sbjct: 200 NLFYVSFALISSFSSQMFELFHSFLKYFPGTHRQVYNNLQEIKAFIARMVEKHRETLDPS 259
Query: 898 EARDFIDAYLPEIEKHKGNATSSFQEK 978
RDFIDAYL ++K K +S F +
Sbjct: 260 APRDFIDAYLIRMDKEKAEPSSEFHHR 286
>ref|XP_855605.1| PREDICTED: cytochrome P450 2B11 [Canis familiaris].
Length = 494
Score = 201 bits (512), Expect = 7e-52
Identities = 104/267 (38%), Positives = 164/267 (61%), Gaps = 4/267 (1%)
Frame = +1
Query: 190 RRSPKNY---PPGPPRLPFLGNFFHLDVEKGHL-ALQRFVKKYGNIISLDSSVFSSVVIT 357
R PK Y PPGP LP LGNF +D KG L + R +KYG++ ++ +V++
Sbjct: 21 RGHPKAYGHLPPGPRPLPILGNFLQMD-RKGLLKSFLRLQEKYGDVFTVYLGPRRTVMLC 79
Query: 358 GLPLIKEAFVHQDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGK 537
G+ I+EA V + F+ R I E VF+ G++ +NG+ WK RRF+L T+R+FG+GK
Sbjct: 80 GIDAIREALVDNAEAFSGRGKIAVVEPVFQGYGVVFANGERWKTLRRFSLATMRDFGMGK 139
Query: 538 KSLEERIQEEAQYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELL 717
+S+EERIQEEAQ L++ + + G +P F ++ +NIICSI FGKRF Y+D +F L+
Sbjct: 140 RSVEERIQEEAQCLVEELRKTEGVLQDPTFFFHSMTANIICSIVFGKRFGYKDPEFLRLM 199
Query: 718 RLLDEVTCQHTSVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPA 897
L +S Q++ +F +K+ PG H+ +++N ++++ F+A ++E H+ +P+
Sbjct: 200 NLFYVSFALISSFSSQMFELFHSFLKYFPGTHRQVYNNLQEIKAFIARMVEKHRETLDPS 259
Query: 898 EARDFIDAYLPEIEKHKGNATSSFQEK 978
RDFIDAYL ++K K +S F +
Sbjct: 260 APRDFIDAYLIRMDKEKAEPSSEFHHR 286
>ref|XP_855301.1| PREDICTED: similar to cytochrome P450, family 2, subfamily F,
polypeptide 1 [Canis familiaris].
Length = 582
Score = 197 bits (501), Expect = 1e-50
Identities = 99/263 (37%), Positives = 156/263 (59%)
Frame = +1
Query: 193 RSPKNYPPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLI 372
R PPGP LPFLGN L + +L + K+YG++ ++ VV++G +
Sbjct: 100 RGKSQLPPGPRPLPFLGNLLQLRSQDMLTSLTKLSKEYGSVYTVHLGPRRVVVLSGYQAV 159
Query: 373 KEAFVHQDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEE 552
KEA V Q + F+ R P K NG+ SNG WK RRF++ LRNFG+GK+S+EE
Sbjct: 160 KEALVDQGEDFSGRGDYPVFFNFTKGNGIAFSNGDRWKVLRRFSVQILRNFGMGKRSIEE 219
Query: 553 RIQEEAQYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDE 732
RI EE +L+ + + G+PF+P F ++ +VSNIICS+ FG RFDY D++ ++RL+++
Sbjct: 220 RILEEGSFLLAELRKTEGKPFDPTFVLSRSVSNIICSVIFGSRFDYDDERLLTIIRLIND 279
Query: 733 VTCQHTSVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDF 912
+ +LYN+FP ++ ++PGPH+ LF N+ ++ +A + +H+ +P RDF
Sbjct: 280 NFQIMSGPWGELYNIFPSLLDWIPGPHRRLFQNFGCMKDLIARSVRDHQDSLDPRCPRDF 339
Query: 913 IDAYLPEIEKHKGNATSSFQEKT 981
ID +L ++ + K + S F T
Sbjct: 340 IDCFLNKMAQEKQDPHSHFHMDT 362
>ref|NP_001183973.1| cytochrome P450 2C21 [Canis lupus familiaris].
Length = 490
Score = 197 bits (500), Expect = 2e-50
Identities = 98/261 (37%), Positives = 150/261 (57%)
Frame = +1
Query: 187 KRRSPKNYPPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLP 366
+ R+ PPGP LP +GN ++ + +L + + YG + ++ + +VV+ G
Sbjct: 22 QNRAKGKLPPGPTPLPIIGNILQINTKNVSKSLSKLAENYGPVFTVYFGMKPTVVLYGYE 81
Query: 367 LIKEAFVHQDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSL 546
+KEA + + + F+ R P + + G++ SNG+ WK+ RRF+LT LRN G+GKK++
Sbjct: 82 AVKEALIDRSEEFSGRGHFPLLDWTIQGLGIVFSNGEKWKQTRRFSLTVLRNMGMGKKTV 141
Query: 547 EERIQEEAQYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLL 726
E+RIQEEA YL++A+ + N P +P F + A N+ICSI F RF+Y D F LL
Sbjct: 142 EDRIQEEALYLVEALKKTNASPCDPTFLLGCAPCNVICSIIFQNRFEYDDKDFLTLLEYF 201
Query: 727 DEVTCQHTSVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEAR 906
E ++ +QLYN FP ++ +LPG H LF N F++ I+ H+ N + R
Sbjct: 202 HENLLISSTSWIQLYNAFPLLIHYLPGSHHVLFKNIANQFKFISEKIKEHEESLNFSNPR 261
Query: 907 DFIDAYLPEIEKHKGNATSSF 969
DFID +L +IEK K N S F
Sbjct: 262 DFIDYFLIKIEKEKHNKQSEF 282
>ref|XP_533661.2| PREDICTED: similar to cytochrome P450 monooxygenase CYP2T1 [Canis
familiaris].
Length = 495
Score = 196 bits (498), Expect = 3e-50
Identities = 97/257 (37%), Positives = 153/257 (59%)
Frame = +1
Query: 211 PPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVH 390
PPGP LP LGN L+ + AL ++G + ++ +VV+ G +++A V
Sbjct: 35 PPGPTPLPLLGNLLQLESRRLDRALMELSGRWGPVFTVRLGPRPAVVLCGYSALRDALVL 94
Query: 391 QDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEA 570
Q F+ R + ER NG++ SNG W+ R FAL L+ FGLG +++EERI EEA
Sbjct: 95 QADAFSGRGAMAVFERFTHGNGIVFSNGLRWRTLRNFALGALKEFGLGTRTIEERILEEA 154
Query: 571 QYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHT 750
L+ G PF+P + NAVSN+ICS+ FG R+ Y+D +FQ LL L ++ +
Sbjct: 155 ACLLGEFQATTGAPFDPRRLLGNAVSNVICSVVFGNRYGYEDPEFQRLLDLFNDNFRIMS 214
Query: 751 SVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLP 930
S ++YN+FP ++ +LPGPH +F N+ +L++F++ I+ H++ P + RDFID +L
Sbjct: 215 SRWGEMYNVFPTLLDWLPGPHHRIFQNFTELRVFISEQIQRHQQTRQPGKPRDFIDCFLD 274
Query: 931 EIEKHKGNATSSFQEKT 981
+++K + + S FQE+T
Sbjct: 275 QMDKEQNDPESHFQEET 291
>ref|NP_001032422.1| cytochrome P450 family 2 subfamily A polypeptide 13 [Canis lupus
familiaris].
Length = 494
Score = 194 bits (494), Expect = 8e-50
Identities = 104/265 (39%), Positives = 162/265 (61%), Gaps = 1/265 (0%)
Frame = +1
Query: 187 KRRSPKNYPPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLP 366
+R+ PPGP LPF+GN+ L+ E+ + +L + ++YG + ++ VV+ G
Sbjct: 26 QRKLGGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRPVVVLCGHE 85
Query: 367 LIKEAFVHQDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSL 546
+KEA V Q + F+ R T + +FK G+ SNG+ K+ RRF++TTLR+FG+GK+ +
Sbjct: 86 AVKEALVDQAEEFSGRGEQATFDWLFKGYGVAFSNGERAKQLRRFSITTLRDFGVGKRGI 145
Query: 547 EERIQEEAQYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLL 726
EERIQEEA +LI+A+ G +P F ++ VSN+I SI FG RFDY+D +F LLR++
Sbjct: 146 EERIQEEAGFLIEALRGTRGAFIDPTFFLSRTVSNVISSIVFGDRFDYEDKEFLSLLRMM 205
Query: 727 DEVTCQHTSVQV-QLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEA 903
+ Q T+ + QLY MF +MK LPGP Q F + L+ F+ +E ++R +P
Sbjct: 206 -LGSFQFTATSMGQLYEMFYSVMKHLPGPQQQAFKELQGLEDFITKKVEQNQRTLDPNSP 264
Query: 904 RDFIDAYLPEIEKHKGNATSSFQEK 978
RDFID++L +++ + N + F K
Sbjct: 265 RDFIDSFLIRMQEEQNNPNTEFYLK 289
>ref|XP_541606.2| PREDICTED: similar to Cytochrome P450 2G1 (CYPIIG1) (P450-OLF1)
(Olfactive) [Canis familiaris].
Length = 494
Score = 192 bits (488), Expect = 4e-49
Identities = 95/256 (37%), Positives = 158/256 (61%)
Frame = +1
Query: 211 PPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVH 390
PPGP +PFLGN + + + + +KYG I ++ VV+ G +KEA V
Sbjct: 34 PPGPTPIPFLGNVLQVRTDATFQSFMKLREKYGPIFTVYMGPRPVVVLCGHEAVKEALVD 93
Query: 391 QDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEA 570
+ F+ R + + ER F+ +G+ ++NG+ W+ RRF+LT LR+FG+GK+S+EERIQEEA
Sbjct: 94 RADEFSGRGELASIERNFQGHGVALANGERWRILRRFSLTILRDFGMGKRSIEERIQEEA 153
Query: 571 QYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHT 750
+L++ + + G P P F ++ VSN+I S+ FG RFDY+D QF +LL++++E + +
Sbjct: 154 GFLLEELRKTKGSPIEPTFFLSRTVSNVISSVVFGSRFDYEDKQFLKLLQMINESFIEMS 213
Query: 751 SVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLP 930
+ QLY+M+ IM++LPG H ++ E+L+ F+A ++ ++ +P RDFID +L
Sbjct: 214 TPWAQLYDMYSGIMQYLPGRHNRIYYLIEELKDFIASRVKINEASLDPQNPRDFIDCFLI 273
Query: 931 EIEKHKGNATSSFQEK 978
++ + N + F K
Sbjct: 274 KMHQDTNNPHTEFNLK 289
>ref|XP_852606.1| PREDICTED: similar to cytochrome P450, family 2, subfamily K,
polypeptide 6 [Canis familiaris].
Length = 558
Score = 191 bits (486), Expect = 7e-49
Identities = 95/263 (36%), Positives = 157/263 (59%)
Frame = +1
Query: 190 RRSPKNYPPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPL 369
+ S +++PPGP LP +GN L++++ + + +KYG+I S+ VV++G
Sbjct: 91 KASKQHFPPGPRPLPIIGNLHILNLKRPYQTMLELSQKYGSIYSIQMGPKKVVVLSGYET 150
Query: 370 IKEAFVHQDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLE 549
+K+A V+ F R +P ER+F+ G++ S+G+ WK RRF+L TLRNFG+GK+ +E
Sbjct: 151 VKDALVNYGDQFGERSQVPIFERLFEGKGIVFSHGETWKTMRRFSLATLRNFGMGKRIIE 210
Query: 550 ERIQEEAQYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLD 729
+ I EE Q+LI + G+PF +N +V+N+I S+ GKRFDYQD QF LL L+
Sbjct: 211 DTIIEECQHLIWSFESHRGKPFEVKTVMNASVANVIVSVLLGKRFDYQDTQFLRLLTLIG 270
Query: 730 EVTCQHTSVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARD 909
E ++ L+NMFP ++ FL H+T+ N ++L F+ +H+ ++ + R
Sbjct: 271 ENVKLIGGPRIALFNMFP-VLGFLLKSHKTVLRNRDELFAFIRMTFLDHQHKFDKNDPRS 329
Query: 910 FIDAYLPEIEKHKGNATSSFQEK 978
FIDA+L ++ K +T+ F ++
Sbjct: 330 FIDAFLVRQQEEKDTSTTYFSDE 352
>ref|NP_001041492.1| hypothetical protein LOC484493 [Canis lupus familiaris].
Length = 494
Score = 189 bits (481), Expect = 3e-48
Identities = 99/257 (38%), Positives = 157/257 (61%), Gaps = 1/257 (0%)
Frame = +1
Query: 211 PPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVH 390
PPGP LPF+GN+ L++++ + + K+YG + ++ VV+ G +KEA V
Sbjct: 34 PPGPTPLPFIGNYLQLNIQQMSDSFMKISKRYGPVFTIHLGPRRVVVLCGYEAVKEALVD 93
Query: 391 QDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEA 570
Q + F+ R T + +FK G+ SNG+ K+ RRF++TTLR+FG+GK+ +EERIQEEA
Sbjct: 94 QAEEFSGRGAQATFDTLFKGYGVTFSNGERAKQLRRFSITTLRDFGVGKRGIEERIQEEA 153
Query: 571 QYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHT 750
+LI+A+ G +P F ++ VSN+I SI FG RFDY+D +F LLR++ + Q T
Sbjct: 154 GFLIEALQGTRGAFIDPTFFLSRTVSNVISSIVFGDRFDYEDKEFLSLLRMM-LGSFQFT 212
Query: 751 SVQV-QLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYL 927
+ + QL MF ++K+LPGP Q + L+ F+ +E ++R +P RDFID++L
Sbjct: 213 ATSMGQLCEMFHSVIKYLPGPQQQAIKELQGLEDFITKKVEQNQRTLDPNSPRDFIDSFL 272
Query: 928 PEIEKHKGNATSSFQEK 978
+++ + N + F K
Sbjct: 273 IRMQEEQNNPNTEFHLK 289
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,746,290
Number of extensions: 1095236
Number of successful extensions: 4322
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 4302
Number of HSP's successfully gapped: 21
Length of query: 327
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 224
Effective length of database: 15,440,896
Effective search space: 3458760704
Effective search space used: 3458760704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009439
(982 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128010.2| PREDICTED: cytochrome P450 2J2-like [Sus scr... 434 e-122
Alignment gi|XP_003360779.1| PREDICTED: cytochrome P450 2J2-like, partial... 431 e-121
Alignment gi|XP_003128009.2| PREDICTED: cytochrome P450 2J2-like, partial... 399 e-111
Alignment gi|NP_999578.1| cytochrome P450 2B22 [Sus scrofa]. 204 8e-53
Alignment gi|NP_999579.1| cytochrome P450 2C33 [Sus scrofa]. 197 6e-51
Alignment gi|NP_999582.1| cytochrome P450 2A19 [Sus scrofa]. 195 4e-50
Alignment gi|XP_003127188.2| PREDICTED: cytochrome P450 2G1-like isoform ... 193 1e-49
Alignment gi|XP_003359352.1| PREDICTED: LOW QUALITY PROTEIN: cytochrome P... 189 2e-48
Alignment gi|NP_999585.1| cytochrome P450 2C49 [Sus scrofa]. 187 6e-48
Alignment gi|NP_001161307.1| cytochrome P450 2C42 [Sus scrofa]. 184 5e-47
>ref|XP_003128010.2| PREDICTED: cytochrome P450 2J2-like [Sus scrofa].
Length = 497
Score = 434 bits (1117), Expect = e-122
Identities = 222/299 (74%), Positives = 245/299 (81%)
Frame = +1
Query: 82 MTPALGFLAEALWTALRPSTXXXXXXXXXXXXXXXKRRSPKNYPPGPPRLPFLGNFFHLD 261
M A+GFLAE TAL PS KR PKNYPPGP RLPF+GNF HLD
Sbjct: 1 MLGAVGFLAEVFGTALGPSALLLSAVAFLFVADILKRWRPKNYPPGPLRLPFVGNFLHLD 60
Query: 262 VEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVHQDQHFANRPMIPTQERV 441
E+ HL+LQRFVKKYGN++SLD FSSVVITGLPLIKEA VHQDQ+F NRP+ Q V
Sbjct: 61 FEQWHLSLQRFVKKYGNVLSLDLGAFSSVVITGLPLIKEALVHQDQNFVNRPINLNQ--V 118
Query: 442 FKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEAQYLIQAIGEENGQPFNP 621
F+KNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEAQYLIQA+ EENG F+P
Sbjct: 119 FQKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEAQYLIQAVREENGDLFDP 178
Query: 622 HFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHTSVQVQLYNMFPRIMKFL 801
HFKINNAVSNIICSITFG+RFDYQDDQFQELLRLLDEVTC SV+VQL+N+FPRIMK L
Sbjct: 179 HFKINNAVSNIICSITFGERFDYQDDQFQELLRLLDEVTCLPKSVRVQLFNVFPRIMKLL 238
Query: 802 PGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLPEIEKHKGNATSSFQEK 978
PGPHQ +FSN EKL++F+A VIENH+RDWNPAEARDFIDAYL EIE KG++ S F E+
Sbjct: 239 PGPHQIIFSNREKLRMFIARVIENHRRDWNPAEARDFIDAYLREIE--KGSSPSVFNEE 295
>ref|XP_003360779.1| PREDICTED: cytochrome P450 2J2-like, partial [Sus scrofa].
Length = 363
Score = 431 bits (1107), Expect = e-121
Identities = 207/258 (80%), Positives = 229/258 (88%)
Frame = +1
Query: 205 NYPPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAF 384
NYPPGP RLPF+GN FHLD EK HL+LQRFVKKYGNI SLD S+VV+TGLPLIKE
Sbjct: 12 NYPPGPLRLPFVGNLFHLDFEKAHLSLQRFVKKYGNIFSLDLCALSAVVVTGLPLIKEVL 71
Query: 385 VHQDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQE 564
VHQ+Q FANRP++P Q+RVFK G++ S+GQVWKEQRRF LTTLRNFGLGKKSLEERIQE
Sbjct: 72 VHQNQKFANRPILPIQDRVFKNKGVVTSSGQVWKEQRRFTLTTLRNFGLGKKSLEERIQE 131
Query: 565 EAQYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQ 744
EAQYL QAIGEENGQPFNP FKI+NAVSNIICSITFGKRFDYQDDQFQELLRLL EVT
Sbjct: 132 EAQYLTQAIGEENGQPFNPQFKISNAVSNIICSITFGKRFDYQDDQFQELLRLLREVTHL 191
Query: 745 HTSVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAY 924
T + QL+N+FPRIMKFLPGPHQTLFS+WEKL++F+A VIENH+RDWNPAEARDFIDAY
Sbjct: 192 QTLLWCQLFNVFPRIMKFLPGPHQTLFSDWEKLEMFIARVIENHRRDWNPAEARDFIDAY 251
Query: 925 LPEIEKHKGNATSSFQEK 978
L EIEK+KGNATSSF E+
Sbjct: 252 LQEIEKNKGNATSSFHEE 269
>ref|XP_003128009.2| PREDICTED: cytochrome P450 2J2-like, partial [Sus scrofa].
Length = 432
Score = 399 bits (1025), Expect = e-111
Identities = 191/229 (83%), Positives = 211/229 (92%)
Frame = +1
Query: 292 FVKKYGNIISLDSSVFSSVVITGLPLIKEAFVHQDQHFANRPMIPTQERVFKKNGLIMSN 471
FVKKYGN+ SLD SSVVITGLP IKEAFVHQD++F+NRP++P Q+RVFK G++MSN
Sbjct: 1 FVKKYGNVFSLDFGALSSVVITGLPFIKEAFVHQDKNFSNRPIVPIQQRVFKDKGVVMSN 60
Query: 472 GQVWKEQRRFALTTLRNFGLGKKSLEERIQEEAQYLIQAIGEENGQPFNPHFKINNAVSN 651
GQVWKEQRRFALTTLRNFGLGKKSLEERIQEEAQYLIQAIGEENGQPFNPHFKINNAVSN
Sbjct: 61 GQVWKEQRRFALTTLRNFGLGKKSLEERIQEEAQYLIQAIGEENGQPFNPHFKINNAVSN 120
Query: 652 IICSITFGKRFDYQDDQFQELLRLLDEVTCQHTSVQVQLYNMFPRIMKFLPGPHQTLFSN 831
IICSITFG+RFDYQD+QFQELL+LLDEV C TSV Q+YN+ P IMKFLPGPHQTLFSN
Sbjct: 121 IICSITFGERFDYQDNQFQELLKLLDEVMCLQTSVWCQIYNIIPWIMKFLPGPHQTLFSN 180
Query: 832 WEKLQIFVACVIENHKRDWNPAEARDFIDAYLPEIEKHKGNATSSFQEK 978
WEKL++FVA VIENH+RDWNPAEARDFI+AYL EIEKHKG+ATSSFQE+
Sbjct: 181 WEKLKMFVAHVIENHRRDWNPAEARDFIEAYLQEIEKHKGDATSSFQEE 229
>ref|NP_999578.1| cytochrome P450 2B22 [Sus scrofa].
Length = 493
Score = 204 bits (518), Expect = 8e-53
Identities = 104/262 (39%), Positives = 162/262 (61%), Gaps = 1/262 (0%)
Frame = +1
Query: 196 SPKNYPPGPPRLPFLGNFFHLDVEKGHL-ALQRFVKKYGNIISLDSSVFSSVVITGLPLI 372
S + PPGP LPFLGN +D KG L + Q ++YG++ ++ V+I G I
Sbjct: 25 SQGHLPPGPRPLPFLGNILQMD-RKGFLKSFQALRERYGDVFTVYLGPRPVVMICGTEAI 83
Query: 373 KEAFVHQDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEE 552
+EA V Q + F+ R I E +F+ G+I SNG+ WK RRF+L T+R+FGLGK+S+EE
Sbjct: 84 REALVDQAEAFSGRGKIAVVEPIFQGYGVIFSNGERWKTLRRFSLATMRDFGLGKRSVEE 143
Query: 553 RIQEEAQYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDE 732
RIQEEAQ L++ + + G +P + +++ +NIICSI FGKRF Y+D +F +LL LL +
Sbjct: 144 RIQEEAQCLVEELRKSQGALQDPTYYFHSSTANIICSIVFGKRFAYRDPEFLQLLDLLFQ 203
Query: 733 VTCQHTSVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDF 912
+S QL+ ++ +K+ PG H+ ++ N +++ F+ +E H+ +P++ RD
Sbjct: 204 TFLLISSFPSQLFELYSAFLKYFPGSHRQIYKNLQQVNAFIGRSVEKHRETLDPSDPRDL 263
Query: 913 IDAYLPEIEKHKGNATSSFQEK 978
ID+YL ++K K N S F E+
Sbjct: 264 IDSYLLRMDKEKSNPNSEFHEQ 285
>ref|NP_999579.1| cytochrome P450 2C33 [Sus scrofa].
Length = 494
Score = 197 bits (502), Expect = 6e-51
Identities = 98/261 (37%), Positives = 156/261 (59%)
Frame = +1
Query: 187 KRRSPKNYPPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLP 366
K + PPGP LP +GN L+++ +L + K+YG + ++ +VV+ G
Sbjct: 26 KNHKRRRLPPGPTPLPIIGNLMQLNLKDIPASLSKLAKQYGPVCTVYFGSQPAVVLHGYE 85
Query: 367 LIKEAFVHQDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSL 546
+KEA + Q F R +IP + GL+ SNG+ WK+ RRF+L TLRNFG+GK+SL
Sbjct: 86 AVKEALIDQGDEFLGRGIIPIIDDTQGGYGLVFSNGERWKQIRRFSLMTLRNFGMGKRSL 145
Query: 547 EERIQEEAQYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLL 726
EER+QEEAQ+L++ + + QPF+P F ++ A N+ICSI F RF Y ++ F L+ LL
Sbjct: 146 EERVQEEAQFLVEELRKTEAQPFDPTFILSCAPCNVICSILFNDRFHYDNETFLSLMNLL 205
Query: 727 DEVTCQHTSVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEAR 906
+ Q +S +Q+YN++P+I+K LPG H+ + + F+ ++ H++ N +
Sbjct: 206 NANFRQISSPWIQIYNLWPQIIKHLPGEHRAFSKRLKDCRSFILEKVKEHQKSPNLNNPQ 265
Query: 907 DFIDAYLPEIEKHKGNATSSF 969
D+ID +L ++E+ K N S F
Sbjct: 266 DYIDCFLSKMEQEKQNPDSEF 286
>ref|NP_999582.1| cytochrome P450 2A19 [Sus scrofa].
Length = 494
Score = 195 bits (495), Expect = 4e-50
Identities = 105/265 (39%), Positives = 163/265 (61%), Gaps = 1/265 (0%)
Frame = +1
Query: 187 KRRSPKNYPPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLP 366
+R+ PPGP LPF+GN+ L+ E+ + +L + ++YG + ++ VV+ G
Sbjct: 26 QRKLQGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISQRYGPVFTVHLGPRRIVVLCGYD 85
Query: 367 LIKEAFVHQDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSL 546
+KEA V Q + F+ R T + +FK G+ SNG+ K+ RRF++TTLR+FG+GK+ +
Sbjct: 86 AVKEALVDQAEEFSGRGEQATFDWLFKGYGVAFSNGERAKQLRRFSITTLRDFGVGKRGI 145
Query: 547 EERIQEEAQYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLL 726
EERIQEEA +LI+A G +P + ++ VSN+I SI FG RFDY+D +F LLR++
Sbjct: 146 EERIQEEAGHLIEAFRGTRGAFIDPTYFLSRTVSNVISSIVFGDRFDYEDKEFLALLRMM 205
Query: 727 DEVTCQHTSVQV-QLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEA 903
+ Q T+ QLY MF +MK LPGP Q F + + L+ F+A +E+++R +P
Sbjct: 206 -LGSFQFTATSTGQLYEMFYSVMKHLPGPQQQAFKDLQGLEDFIARKVEHNQRTLDPNSP 264
Query: 904 RDFIDAYLPEIEKHKGNATSSFQEK 978
RDFID++L +++ K N + F K
Sbjct: 265 RDFIDSFLIRMQEEKKNPDTEFYWK 289
>ref|XP_003127188.2| PREDICTED: cytochrome P450 2G1-like isoform 1 [Sus scrofa].
Length = 549
Score = 193 bits (490), Expect = 1e-49
Identities = 94/256 (36%), Positives = 158/256 (61%)
Frame = +1
Query: 211 PPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVH 390
PPGP +PFLGN + + + + +KYG + ++ VV+ G +KEA +
Sbjct: 34 PPGPTPIPFLGNLLQVRTDATFQSFMKLREKYGPVFTVYMGPRPVVVLCGHEAVKEALID 93
Query: 391 QDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEA 570
+ F+ R + + ER F+ +G+ ++NG W+ RRF+LT LR+FG+GK+S+EERIQEEA
Sbjct: 94 RADEFSGRGELASVERNFQGHGVALANGDRWRILRRFSLTILRDFGMGKRSIEERIQEEA 153
Query: 571 QYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHT 750
+L+Q + + G P P F ++ VSN+I S+ FG RFDY+D QF +LL+++++ + +
Sbjct: 154 GFLLQELRKTKGAPIEPTFFLSRTVSNVISSVVFGSRFDYEDKQFLKLLQMINQSFIEMS 213
Query: 751 SVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLP 930
+ QLY+M+ IM++LPG H ++ E+L+ F+A ++ ++ +P RDFID +L
Sbjct: 214 TPWAQLYDMYSGIMQYLPGRHNRIYYLIEELKDFIASRVKINEASLDPQNPRDFIDCFLI 273
Query: 931 EIEKHKGNATSSFQEK 978
++ + K N + F K
Sbjct: 274 KMHQDKDNPHTEFNLK 289
>ref|XP_003359352.1| PREDICTED: LOW QUALITY PROTEIN: cytochrome P450 2C18 [Sus scrofa].
Length = 490
Score = 189 bits (481), Expect = 2e-48
Identities = 98/253 (38%), Positives = 152/253 (60%)
Frame = +1
Query: 211 PPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVH 390
PPGP LP LGN L+V+ +L K YG + ++ + +VV+ G +KEA +
Sbjct: 30 PPGPTPLPILGNILQLNVKDISKSLSNLSKVYGPVFTVYLGLKPAVVLHGYEAMKEALID 89
Query: 391 QDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEA 570
+ F+ R +P ERV K +G+I S+G+ WKE RRF+L TLRNFG+GK+S+EER+QEEA
Sbjct: 90 GGEEFSGRGHLPMAERVNKGHGIIFSSGKRWKEIRRFSLMTLRNFGMGKRSIEERVQEEA 149
Query: 571 QYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHT 750
+ L++ + + N P++P F + A +ICSI F RFDY D F LL L+E +
Sbjct: 150 RCLVEELRKTNASPWDPTFLLGCAPCKVICSIIFRNRFDYTDPNFLTLLEKLNENFRILS 209
Query: 751 SVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLP 930
S +Q+ N FP ++ +LPG H +F N ++ ++ ++ H+ + + RDFID +L
Sbjct: 210 SPWIQVCNNFPALIDYLPGSHNKVFKNSAYVKSYILEKVKEHQASLDVNDPRDFIDCFLI 269
Query: 931 EIEKHKGNATSSF 969
++E+ K N +F
Sbjct: 270 KMEQEKHNHQVAF 282
>ref|NP_999585.1| cytochrome P450 2C49 [Sus scrofa].
Length = 490
Score = 187 bits (476), Expect = 6e-48
Identities = 98/253 (38%), Positives = 149/253 (58%)
Frame = +1
Query: 211 PPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVH 390
PPGP L LGN LDV+ +L K YG + ++ + +VV+ G +KEA +
Sbjct: 30 PPGPTPLSILGNILQLDVKDISKSLSNLSKVYGPVFTVYFGLKPAVVLHGYEAVKEALID 89
Query: 391 QDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEA 570
+ F+ R P ERV K +G+I S+G+ WKE RRF+L TLRNFG+GK+S+EER+QEEA
Sbjct: 90 GGEEFSGRGHFPMAERVNKGHGIIFSSGKRWKETRRFSLMTLRNFGMGKRSIEERVQEEA 149
Query: 571 QYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHT 750
+ L++ + + N P +P F + A N+ICSI F RFDY D F LL L+E +
Sbjct: 150 RCLVEELRKTNASPCDPTFLLGCAPCNVICSIIFHNRFDYTDPNFLTLLEKLNENFRILS 209
Query: 751 SVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLP 930
S +Q+ N FP ++ +LPG H + N ++ ++ ++ H+ + + RDFID +L
Sbjct: 210 SPWMQVCNNFPALIDYLPGSHNKVLKNSAYVKSYILEKVKEHQASLDVKDPRDFIDCFLI 269
Query: 931 EIEKHKGNATSSF 969
++E+ K N +F
Sbjct: 270 KMEQEKHNHQVAF 282
>ref|NP_001161307.1| cytochrome P450 2C42 [Sus scrofa].
Length = 490
Score = 184 bits (468), Expect = 5e-47
Identities = 98/253 (38%), Positives = 143/253 (56%)
Frame = +1
Query: 211 PPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVH 390
PPGP LP LGN LDV+ +L + YG + ++ + +VV+ G +KEA V
Sbjct: 30 PPGPTPLPILGNILQLDVKNISKSLSNLAEVYGPVFTVYFGIKPTVVLYGYEAVKEALVD 89
Query: 391 QDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEA 570
+ F+ R P E+ K G+I SNG+ WKE RRF+L TLRN G+GK+S+E+RIQEEA
Sbjct: 90 LGEEFSGRGHFPVAEKTHKGLGIIFSNGKKWKEIRRFSLMTLRNLGMGKRSIEDRIQEEA 149
Query: 571 QYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHT 750
L++ + + N P +P F ++ A N+ICSI F RFDY D F LL E +
Sbjct: 150 CCLVEELRKTNASPCDPTFILDCAPCNVICSIIFQNRFDYTDQDFLTLLEKFHENLNILS 209
Query: 751 SVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLP 930
S +Q+ N FP ++ + PG H L N L+ +V ++ H+ + RDFID +L
Sbjct: 210 SPWIQVCNNFPALIDYSPGIHNKLLKNIAYLKSYVLKKVKEHQESLDINNPRDFIDCFLI 269
Query: 931 EIEKHKGNATSSF 969
++E+ K N S +
Sbjct: 270 KMEQEKHNQQSEY 282
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,540,232
Number of extensions: 684524
Number of successful extensions: 2582
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 2550
Number of HSP's successfully gapped: 26
Length of query: 327
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 228
Effective length of database: 8,879,129
Effective search space: 2024441412
Effective search space used: 2024441412
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009439
(982 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083255.1| cytochrome P450, family 2, subfamily j, polypep... 376 e-104
Alignment gi|NP_034138.3| cytochrome P450 2J6 [Mus musculus]. 368 e-102
Alignment gi|NP_663523.2| cytochrome P450, family 2, subfamily j, polypep... 366 e-101
Alignment gi|NP_001093652.1| cytochrome P450, family 2, subfamily j, poly... 365 e-101
Alignment gi|NP_034137.1| cytochrome P450 2J5 [Mus musculus]. 352 3e-97
Alignment gi|NP_001004141.2| cytochrome P450, family 2, subfamily j, poly... 350 7e-97
Alignment gi|NP_001098397.1| cytochrome P450, family 2, subfamily j, poly... 345 4e-95
Alignment gi|NP_038837.1| cytochrome P450, family 2, subfamily g, polypep... 218 7e-57
Alignment gi|NP_001161377.1| cytochrome P450, family 2, subfamily c, poly... 206 3e-53
Alignment gi|NP_001001446.3| cytochrome P450, family 2, subfamily c, poly... 206 3e-53
>ref|NP_083255.1| cytochrome P450, family 2, subfamily j, polypeptide 9 [Mus
musculus].
Length = 502
Score = 376 bits (966), Expect = e-104
Identities = 179/299 (59%), Positives = 221/299 (73%)
Frame = +1
Query: 82 MTPALGFLAEALWTALRPSTXXXXXXXXXXXXXXXKRRSPKNYPPGPPRLPFLGNFFHLD 261
M A G L A+W AL K R PKNYPPGP RLPF+G FHLD
Sbjct: 1 MLAAAGSLVAAIWAALHLRILLLSAVTFLFLADFLKNRRPKNYPPGPMRLPFVGCLFHLD 60
Query: 262 VEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVHQDQHFANRPMIPTQERV 441
++ HL+LQ+FVKKYGN++SLD + SVVITG+PLIKE F + +F NRP+ ++ +
Sbjct: 61 PKQPHLSLQQFVKKYGNVLSLDFANIPSVVITGMPLIKEIFTQMEHNFMNRPVTLLRKHL 120
Query: 442 FKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEAQYLIQAIGEENGQPFNP 621
F KNGLI S+ Q WKEQRRFAL TLRNFGLGK+SLEERIQEEA YL++AI +E GQPF+P
Sbjct: 121 FNKNGLIFSSDQTWKEQRRFALMTLRNFGLGKRSLEERIQEEAHYLVEAIRDEGGQPFDP 180
Query: 622 HFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHTSVQVQLYNMFPRIMKFL 801
HF I+NAVSNIICSITFG+RFDY D QFQE+LRLLDE C +S+ QLYN+FPRI+++L
Sbjct: 181 HFNISNAVSNIICSITFGERFDYHDSQFQEMLRLLDEAMCLESSMMCQLYNIFPRILQYL 240
Query: 802 PGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLPEIEKHKGNATSSFQEK 978
PG HQTLF NW KLQ+FV+ ++ NH+RDW+P E RDFIDA+L E+ K+ T+SF E+
Sbjct: 241 PGSHQTLFRNWRKLQLFVSDIVNNHRRDWDPDEPRDFIDAFLTEMTKYPDKTTTSFNEE 299
>ref|NP_034138.3| cytochrome P450 2J6 [Mus musculus].
Length = 501
Score = 368 bits (945), Expect = e-102
Identities = 178/298 (59%), Positives = 218/298 (73%)
Frame = +1
Query: 82 MTPALGFLAEALWTALRPSTXXXXXXXXXXXXXXXKRRSPKNYPPGPPRLPFLGNFFHLD 261
M A G L +W AL P T K R PKNYPPGP LPF+GN F LD
Sbjct: 1 MLAATGSLLATIWAALHPRTLLVAAVTFLLLADYFKNRRPKNYPPGPWGLPFVGNIFQLD 60
Query: 262 VEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVHQDQHFANRPMIPTQERV 441
+ HL++Q VKKYGNI SL+ +SVVITGLPLIKEA +Q+ NRP+ QER+
Sbjct: 61 FGQPHLSIQPLVKKYGNIFSLNLGDITSVVITGLPLIKEALTQMEQNIMNRPLSVMQERI 120
Query: 442 FKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEAQYLIQAIGEENGQPFNP 621
KNGLI S+GQ+WKEQRRFAL TLRNFGLGKKSLEER+QEEA +L++AI EE G+PFNP
Sbjct: 121 SNKNGLIFSSGQIWKEQRRFALMTLRNFGLGKKSLEERMQEEASHLVEAIREEEGKPFNP 180
Query: 622 HFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHTSVQVQLYNMFPRIMKFL 801
HF INNAVSNIICS+TFG+RFDY D +FQE+LRLLDEV T++ QLYN+FP IMK++
Sbjct: 181 HFSINNAVSNIICSVTFGERFDYHDSRFQEMLRLLDEVMYLETTMISQLYNIFPWIMKYI 240
Query: 802 PGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLPEIEKHKGNATSSFQE 975
PG HQ +F NWEKL++FV+C+I++H++DWNP E RDFIDA+L E+ K+ TS +E
Sbjct: 241 PGSHQKVFRNWEKLKLFVSCMIDDHRKDWNPDEPRDFIDAFLKEMTKYPEKTTSFNEE 298
>ref|NP_663523.2| cytochrome P450, family 2, subfamily j, polypeptide 13 [Mus
musculus].
Length = 503
Score = 366 bits (940), Expect = e-101
Identities = 179/300 (59%), Positives = 221/300 (73%), Gaps = 1/300 (0%)
Frame = +1
Query: 82 MTPALGFLAEALWTALRPSTXXXXXXXXXXXXXXXKRRSPKNYPPGPPRLPFLGNFFHLD 261
M A LA A W AL T K R PKNYPP PPRLPF+GN F +D
Sbjct: 1 MLEAADSLAAAFWAALHLRTLLLAAVTFLFLADYLKSRRPKNYPPRPPRLPFVGNSFQMD 60
Query: 262 VEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVHQDQHFANRPMIPTQERV 441
+ + HLA+Q+FVKKYGN+ISLD + S+V+I+ LPLIKEAF H D++F NR + P Q ++
Sbjct: 61 LTQSHLAVQKFVKKYGNVISLDFGIKSAVIISSLPLIKEAFSHLDENFINRRIFPLQRQI 120
Query: 442 FKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEAQYLIQAIGEENGQPFNP 621
F NGLI S+GQ WKEQRRFAL TLRNFGLGKKSLE RIQEEA +L++AIGEE GQPF+P
Sbjct: 121 FNGNGLIFSSGQTWKEQRRFALMTLRNFGLGKKSLEHRIQEEASHLVEAIGEEEGQPFDP 180
Query: 622 HFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDE-VTCQHTSVQVQLYNMFPRIMKF 798
HFKI +AVSNIICSITFG+RF+Y D QFQELL+LLD+ + TS+ V LYN+FP I K
Sbjct: 181 HFKIYSAVSNIICSITFGERFEYHDSQFQELLQLLDKAMYLGTTSLMVHLYNIFPWITKH 240
Query: 799 LPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLPEIEKHKGNATSSFQEK 978
LPG HQTL + W KL+ ++A +I+NH++DWNP E RDFIDA+L E+ K+ G T+SF E+
Sbjct: 241 LPGQHQTLLATWRKLKSYIADIIDNHRKDWNPDEPRDFIDAFLNEMAKYPGKTTTSFNEE 300
>ref|NP_001093652.1| cytochrome P450, family 2, subfamily j, polypeptide 12, pseudogene
[Mus musculus].
Length = 502
Score = 365 bits (937), Expect = e-101
Identities = 169/289 (58%), Positives = 217/289 (75%)
Frame = +1
Query: 112 ALWTALRPSTXXXXXXXXXXXXXXXKRRSPKNYPPGPPRLPFLGNFFHLDVEKGHLALQR 291
A+W L T K + PKNYPPGP RLPF+GN F LD+E+ H+ +Q+
Sbjct: 11 AIWALLHFKTLVLAAVTFMLLAHYLKTQRPKNYPPGPWRLPFVGNLFQLDLEQPHVVIQQ 70
Query: 292 FVKKYGNIISLDSSVFSSVVITGLPLIKEAFVHQDQHFANRPMIPTQERVFKKNGLIMSN 471
FVKKYGN+ SLD SV+ITGLPLIKE F + +Q+F NRP+ P ++RVF NGLI+SN
Sbjct: 71 FVKKYGNLTSLDFGNIPSVIITGLPLIKEVFTNMEQNFLNRPITPIRKRVFNNNGLIISN 130
Query: 472 GQVWKEQRRFALTTLRNFGLGKKSLEERIQEEAQYLIQAIGEENGQPFNPHFKINNAVSN 651
GQ WKEQRRFAL TL+NFGLGKKSLE+RIQ+EA L++AIGEE GQPF+PHFKIN+AVSN
Sbjct: 131 GQTWKEQRRFALMTLKNFGLGKKSLEQRIQKEADCLVEAIGEEKGQPFDPHFKINSAVSN 190
Query: 652 IICSITFGKRFDYQDDQFQELLRLLDEVTCQHTSVQVQLYNMFPRIMKFLPGPHQTLFSN 831
IIC+ FG+RF+Y+D F ELLRLLDE TC S+ QLYN+FP I++++PG HQT+ N
Sbjct: 191 IICTFAFGERFEYEDSHFHELLRLLDEATCLEASMMCQLYNVFPSIIQYVPGSHQTVLRN 250
Query: 832 WEKLQIFVACVIENHKRDWNPAEARDFIDAYLPEIEKHKGNATSSFQEK 978
WEKL++F+ ++E+H++DWNP E RDFIDA+L E+ K+ T+SF E+
Sbjct: 251 WEKLKLFIYQMMESHRKDWNPDEPRDFIDAFLTEMSKYGDKTTTSFNEE 299
>ref|NP_034137.1| cytochrome P450 2J5 [Mus musculus].
Length = 501
Score = 352 bits (903), Expect = 3e-97
Identities = 172/294 (58%), Positives = 209/294 (71%)
Frame = +1
Query: 94 LGFLAEALWTALRPSTXXXXXXXXXXXXXXXKRRSPKNYPPGPPRLPFLGNFFHLDVEKG 273
L L W AL T + R PKNYPPGP RLPF+GNFF +D ++
Sbjct: 5 LSSLVTTFWEALHLKTLVLAVVTFLFLINILRSRHPKNYPPGPWRLPFVGNFFQIDTKQT 64
Query: 274 HLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVHQDQHFANRPMIPTQERVFKKN 453
HL LQ+FVKKYGN+ SL+ VV++GLPLIKE F H DQ+F NR M P +ER+ KN
Sbjct: 65 HLVLQQFVKKYGNVFSLELGQSPVVVVSGLPLIKEMFTHLDQNFVNRFMTPVRERITGKN 124
Query: 454 GLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEAQYLIQAIGEENGQPFNPHFKI 633
GL++SNGQ WKEQRR AL LRNFGLGKKSLEERIQEE +L++AI EE GQPFNPH K+
Sbjct: 125 GLVVSNGQTWKEQRRLALMALRNFGLGKKSLEERIQEETHHLVEAIREEGGQPFNPHLKL 184
Query: 634 NNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHTSVQVQLYNMFPRIMKFLPGPH 813
NAVSNIICS+TFG+RFDY+D QFQELL+LLDE S QLYN FP IMK+LPGPH
Sbjct: 185 INAVSNIICSVTFGERFDYEDCQFQELLQLLDETMHLMGSSAGQLYNGFPCIMKYLPGPH 244
Query: 814 QTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLPEIEKHKGNATSSFQE 975
Q +F NW KL++FV+ +++ H++DWNP E RDFIDA+L E++K TS +E
Sbjct: 245 QKIFRNWGKLKLFVSHIVKKHEKDWNPDEPRDFIDAFLIEMQKDPDRTTSFNEE 298
>ref|NP_001004141.2| cytochrome P450, family 2, subfamily j, polypeptide 11 [Mus
musculus].
Length = 504
Score = 350 bits (899), Expect = 7e-97
Identities = 162/266 (60%), Positives = 208/266 (78%), Gaps = 2/266 (0%)
Frame = +1
Query: 187 KRRSPKNYPPGPPRLPFLGNFFH--LDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITG 360
K R PKNYPPGP RLPF+GN F LDV + HL +Q FVKKYGN+IS++ SSV+I+G
Sbjct: 36 KNRRPKNYPPGPRRLPFVGNLFQFDLDVSRLHLGIQPFVKKYGNVISVNFGYISSVIISG 95
Query: 361 LPLIKEAFVHQDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKK 540
LPLIKEA +Q+F RP + ++ VFK NG++ S+GQ WKEQR+FALT L+NFGLGKK
Sbjct: 96 LPLIKEAITGMEQNFLKRPSLAARQHVFKNNGIVFSSGQTWKEQRKFALTILKNFGLGKK 155
Query: 541 SLEERIQEEAQYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLR 720
SLE+ IQEEA +L++AIGEE GQPF+PHF+INNAV NIICSI FG+RF+Y D+QFQELL+
Sbjct: 156 SLEQCIQEEAYHLVKAIGEEKGQPFDPHFRINNAVGNIICSIIFGERFEYDDNQFQELLK 215
Query: 721 LLDEVTCQHTSVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAE 900
L DE+ C S+ LYN+FP I K+LPGP Q LFSNWEKL++FV+ ++++H+ DWNP+
Sbjct: 216 LADEIICSEASMMSVLYNVFPSIFKYLPGPQQKLFSNWEKLKLFVSRMMDSHREDWNPSA 275
Query: 901 ARDFIDAYLPEIEKHKGNATSSFQEK 978
RDFIDA+L E+ K+ T+SF E+
Sbjct: 276 PRDFIDAFLTEMTKYPDKTTTSFNEE 301
>ref|NP_001098397.1| cytochrome P450, family 2, subfamily j, polypeptide 8 [Mus
musculus].
Length = 503
Score = 345 bits (884), Expect = 4e-95
Identities = 161/266 (60%), Positives = 204/266 (76%), Gaps = 2/266 (0%)
Frame = +1
Query: 187 KRRSPKNYPPGPPRLPFLGNFFH--LDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITG 360
K R PKNYPPGP RLPF+GN F LDV HL +Q FVKKYGN+ISLD SV+I+G
Sbjct: 36 KNRHPKNYPPGPWRLPFVGNLFQFDLDVSHLHLGIQPFVKKYGNLISLDFGTIPSVIISG 95
Query: 361 LPLIKEAFVHQDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKK 540
PLIKEA Q+F RP++ ++ +FK NG+I S+GQ WKEQRRF L L+NFGLGKK
Sbjct: 96 EPLIKEALTCMGQNFLKRPILAARQHIFKNNGIISSSGQTWKEQRRFTLMILKNFGLGKK 155
Query: 541 SLEERIQEEAQYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLR 720
SLE+RIQ+EA +L++AI EE G+PF+PHF INNAVSNIICSIT G+RF+Y+D+QFQELL+
Sbjct: 156 SLEQRIQDEAHHLVEAIAEEKGRPFDPHFMINNAVSNIICSITIGERFEYEDNQFQELLK 215
Query: 721 LLDEVTCQHTSVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAE 900
L DE C S + LYN+FP I K+LPGPHQ LFSNWEKL++F + V+++H++DWNP+
Sbjct: 216 LADETLCLEASKVLMLYNVFPSIFKYLPGPHQKLFSNWEKLKLFFSHVMDSHRKDWNPSA 275
Query: 901 ARDFIDAYLPEIEKHKGNATSSFQEK 978
RDFIDA+L E+ K+ T+SF E+
Sbjct: 276 PRDFIDAFLTEMAKYSDKTTTSFNEE 301
>ref|NP_038837.1| cytochrome P450, family 2, subfamily g, polypeptide 1 [Mus
musculus].
Length = 494
Score = 218 bits (554), Expect = 7e-57
Identities = 105/256 (41%), Positives = 165/256 (64%)
Frame = +1
Query: 211 PPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVH 390
PPGP +PFLGNF + + + Q+ KKYG++ ++ VV+ G +KEA V
Sbjct: 34 PPGPTPIPFLGNFLQVRTDATFQSFQKLQKKYGSVFTVYFGPRPVVVLCGHEAVKEALVD 93
Query: 391 QDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEA 570
Q F+ R +PT E+ F+ GL +SNG+ WK RRF+LT LRNFG+GK+S+EERIQEEA
Sbjct: 94 QADDFSGRGEMPTLEKNFQGYGLALSNGERWKILRRFSLTVLRNFGMGKRSIEERIQEEA 153
Query: 571 QYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHT 750
YL++ + + G P +P ++ VSN+ICS+ FGKRFDYQD +FQ L+R+++E + +
Sbjct: 154 GYLLEELHKVKGAPIDPTLYLSRTVSNVICSVVFGKRFDYQDQRFQSLMRMINESFVEMS 213
Query: 751 SVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLP 930
QLY+M+ ++M++ PG H L++ E L+ F+A ++ ++ ++P+ RDFID +L
Sbjct: 214 KPWAQLYDMYWKVMQYFPGRHNYLYNLIEDLKDFIASRVKINEASFDPSNPRDFIDCFLI 273
Query: 931 EIEKHKGNATSSFQEK 978
++ + K + + F K
Sbjct: 274 KMHQDKSDPHTEFNLK 289
>ref|NP_001161377.1| cytochrome P450, family 2, subfamily c, polypeptide 44 isoform 2
[Mus musculus].
Length = 456
Score = 206 bits (523), Expect = 3e-53
Identities = 102/261 (39%), Positives = 159/261 (60%)
Frame = +1
Query: 187 KRRSPKNYPPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLP 366
K R+ PPGP LP +GN LD++ +L + K+YG + +L + +VV+ G
Sbjct: 26 KMRTGGRLPPGPTPLPIIGNILQLDLKDIPASLSKLAKEYGPVYTLYFGSWPTVVLHGYD 85
Query: 367 LIKEAFVHQDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSL 546
++KEA ++Q F R +P E K +G++ S G+ WK RRF+L TL+NFG+GK+SL
Sbjct: 86 VVKEALLNQGDEFLGRGPLPIIEDSQKGHGIVFSEGERWKLLRRFSLMTLKNFGMGKRSL 145
Query: 547 EERIQEEAQYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLL 726
EER+QEEA+ L++ + + QPF+P F + A N+ICSI F +RF Y D F L+ LL
Sbjct: 146 EERVQEEARCLVEELHKTEAQPFDPTFILACAPCNVICSILFNERFPYNDKTFLNLMDLL 205
Query: 727 DEVTCQHTSVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEAR 906
++ Q S+ +Q+YN++P IMK++PG H+ ++ F+ ++ H+ +PA R
Sbjct: 206 NKNFYQLNSIWIQMYNLWPTIMKYIPGKHREFSKRLGGVKNFILEKVKEHQESLDPANPR 265
Query: 907 DFIDAYLPEIEKHKGNATSSF 969
D+ID +L +IE+ K N S F
Sbjct: 266 DYIDCFLSKIEEEKHNLKSDF 286
>ref|NP_001001446.3| cytochrome P450, family 2, subfamily c, polypeptide 44 isoform 1
[Mus musculus].
Length = 494
Score = 206 bits (523), Expect = 3e-53
Identities = 102/261 (39%), Positives = 159/261 (60%)
Frame = +1
Query: 187 KRRSPKNYPPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLP 366
K R+ PPGP LP +GN LD++ +L + K+YG + +L + +VV+ G
Sbjct: 26 KMRTGGRLPPGPTPLPIIGNILQLDLKDIPASLSKLAKEYGPVYTLYFGSWPTVVLHGYD 85
Query: 367 LIKEAFVHQDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSL 546
++KEA ++Q F R +P E K +G++ S G+ WK RRF+L TL+NFG+GK+SL
Sbjct: 86 VVKEALLNQGDEFLGRGPLPIIEDSQKGHGIVFSEGERWKLLRRFSLMTLKNFGMGKRSL 145
Query: 547 EERIQEEAQYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLL 726
EER+QEEA+ L++ + + QPF+P F + A N+ICSI F +RF Y D F L+ LL
Sbjct: 146 EERVQEEARCLVEELHKTEAQPFDPTFILACAPCNVICSILFNERFPYNDKTFLNLMDLL 205
Query: 727 DEVTCQHTSVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEAR 906
++ Q S+ +Q+YN++P IMK++PG H+ ++ F+ ++ H+ +PA R
Sbjct: 206 NKNFYQLNSIWIQMYNLWPTIMKYIPGKHREFSKRLGGVKNFILEKVKEHQESLDPANPR 265
Query: 907 DFIDAYLPEIEKHKGNATSSF 969
D+ID +L +IE+ K N S F
Sbjct: 266 DYIDCFLSKIEEEKHNLKSDF 286
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,008,770
Number of extensions: 903442
Number of successful extensions: 3458
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 3399
Number of HSP's successfully gapped: 59
Length of query: 327
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 225
Effective length of database: 12,553,887
Effective search space: 2824624575
Effective search space used: 2824624575
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009439
(982 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000766.2| cytochrome P450 2J2 [Homo sapiens]. 419 e-117
Alignment gi|NP_000753.3| cytochrome P450 2A6 [Homo sapiens]. 199 4e-51
Alignment gi|NP_000758.1| cytochrome P450 2B6 [Homo sapiens]. 197 2e-50
Alignment gi|NP_000757.2| cytochrome P450 2A13 [Homo sapiens]. 196 2e-50
Alignment gi|NP_000763.1| cytochrome P450 2C18 isoform 1 [Homo sapiens]. 191 1e-48
Alignment gi|NP_000755.2| cytochrome P450 2A7 isoform 1 [Homo sapiens]. 189 3e-48
Alignment gi|NP_000760.1| cytochrome P450 2C19 [Homo sapiens]. 189 4e-48
Alignment gi|NP_000765.2| cytochrome P450 2F1 [Homo sapiens]. 189 4e-48
Alignment gi|NP_078790.2| vitamin D 25-hydroxylase [Homo sapiens]. 186 4e-47
Alignment gi|NP_000762.2| cytochrome P450 2C9 [Homo sapiens]. 185 6e-47
>ref|NP_000766.2| cytochrome P450 2J2 [Homo sapiens].
Length = 502
Score = 419 bits (1077), Expect = e-117
Identities = 202/299 (67%), Positives = 235/299 (78%)
Frame = +1
Query: 82 MTPALGFLAEALWTALRPSTXXXXXXXXXXXXXXXKRRSPKNYPPGPPRLPFLGNFFHLD 261
M A+G LA ALW + P T KRR PKNYPPGP RLPFLGNFF +D
Sbjct: 1 MLAAMGSLAAALWAVVHPRTLLLGTVAFLLAADFLKRRRPKNYPPGPWRLPFLGNFFLVD 60
Query: 262 VEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVHQDQHFANRPMIPTQERV 441
E+ HL +Q FVKKYGN+ SL+ S+V+ITGLPLIKEA +H DQ+F NRP+ P +E +
Sbjct: 61 FEQSHLEVQLFVKKYGNLFSLELGDISAVLITGLPLIKEALIHMDQNFGNRPVTPMREHI 120
Query: 442 FKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEAQYLIQAIGEENGQPFNP 621
FKKNGLIMS+GQ WKEQRRF LT LRNFGLGKKSLEERIQEEAQ+L +AI EENGQPF+P
Sbjct: 121 FKKNGLIMSSGQAWKEQRRFTLTALRNFGLGKKSLEERIQEEAQHLTEAIKEENGQPFDP 180
Query: 622 HFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHTSVQVQLYNMFPRIMKFL 801
HFKINNAVSNIICSITFG+RF+YQD FQ+LL+LLDEVT S QLYN+FP IMKFL
Sbjct: 181 HFKINNAVSNIICSITFGERFEYQDSWFQQLLKLLDEVTYLEASKTCQLYNVFPWIMKFL 240
Query: 802 PGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLPEIEKHKGNATSSFQEK 978
PGPHQTLFSNW+KL++FV+ +I+ H++DWNPAE RDFIDAYL E+ KH GN TSSF E+
Sbjct: 241 PGPHQTLFSNWKKLKLFVSHMIDKHRKDWNPAETRDFIDAYLKEMSKHTGNPTSSFHEE 299
>ref|NP_000753.3| cytochrome P450 2A6 [Homo sapiens].
Length = 494
Score = 199 bits (505), Expect = 4e-51
Identities = 106/265 (40%), Positives = 163/265 (61%), Gaps = 1/265 (0%)
Frame = +1
Query: 187 KRRSPKNYPPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLP 366
+R+S PPGP LPF+GN+ L+ E+ + +L + ++YG + ++ VV+ G
Sbjct: 26 QRKSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHD 85
Query: 367 LIKEAFVHQDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSL 546
++EA V Q + F+ R T + VFK G++ SNG+ K+ RRF++ TLR+FG+GK+ +
Sbjct: 86 AVREALVDQAEEFSGRGEQATFDWVFKGYGVVFSNGERAKQLRRFSIATLRDFGVGKRGI 145
Query: 547 EERIQEEAQYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLL 726
EERIQEEA +LI A+ G +P F ++ VSN+I SI FG RFDY+D +F LLR++
Sbjct: 146 EERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRFDYKDKEFLSLLRMM 205
Query: 727 DEVTCQHTSVQV-QLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEA 903
+ Q TS QLY MF +MK LPGP Q F + L+ F+A +E+++R +P
Sbjct: 206 LGI-FQFTSTSTGQLYEMFSSVMKHLPGPQQQAFQLLQGLEDFIAKKVEHNQRTLDPNSP 264
Query: 904 RDFIDAYLPEIEKHKGNATSSFQEK 978
RDFID++L +++ + N + F K
Sbjct: 265 RDFIDSFLIRMQEEEKNPNTEFYLK 289
>ref|NP_000758.1| cytochrome P450 2B6 [Homo sapiens].
Length = 491
Score = 197 bits (500), Expect = 2e-50
Identities = 98/256 (38%), Positives = 153/256 (59%)
Frame = +1
Query: 211 PPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVH 390
PPGP LP LGN +D + RF +KYG++ ++ V++ G+ I+EA V
Sbjct: 31 PPGPRPLPLLGNLLQMDRRGLLKSFLRFREKYGDVFTVHLGPRPVVMLCGVEAIREALVD 90
Query: 391 QDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEA 570
+ + F+ R I + F+ G+I +NG WK RRF++TT+R+FG+GK+S+EERIQEEA
Sbjct: 91 KAEAFSGRGKIAMVDPFFRGYGVIFANGNRWKVLRRFSVTTMRDFGMGKRSVEERIQEEA 150
Query: 571 QYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHT 750
Q LI+ + + G +P F + +NIICSI FGKRF YQD +F ++L L + +
Sbjct: 151 QCLIEELRKSKGALMDPTFLFQSITANIICSIVFGKRFHYQDQEFLKMLNLFYQTFSLIS 210
Query: 751 SVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLP 930
SV QL+ +F +K+ PG H+ ++ N +++ ++ +E H+ +P+ +D ID YL
Sbjct: 211 SVFGQLFELFSGFLKYFPGAHRQVYKNLQEINAYIGHSVEKHRETLDPSAPKDLIDTYLL 270
Query: 931 EIEKHKGNATSSFQEK 978
+EK K NA S F +
Sbjct: 271 HMEKEKSNAHSEFSHQ 286
>ref|NP_000757.2| cytochrome P450 2A13 [Homo sapiens].
Length = 494
Score = 196 bits (499), Expect = 2e-50
Identities = 105/265 (39%), Positives = 162/265 (61%), Gaps = 1/265 (0%)
Frame = +1
Query: 187 KRRSPKNYPPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLP 366
+R+S PPGP LPF+GN+ L+ E+ + +L + ++YG + ++ VV+ G
Sbjct: 26 QRKSRGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHD 85
Query: 367 LIKEAFVHQDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSL 546
+KEA V Q + F+ R T + +FK G+ SNG+ K+ RRF++ TLR FG+GK+ +
Sbjct: 86 AVKEALVDQAEEFSGRGEQATFDWLFKGYGVAFSNGERAKQLRRFSIATLRGFGVGKRGI 145
Query: 547 EERIQEEAQYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLL 726
EERIQEEA +LI A+ +G +P F ++ VSN+I SI FG RFDY+D +F LLR++
Sbjct: 146 EERIQEEAGFLIDALRGTHGANIDPTFFLSRTVSNVISSIVFGDRFDYEDKEFLSLLRMM 205
Query: 727 DEVTCQHTSVQV-QLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEA 903
+ Q T+ QLY MF +MK LPGP Q F + L+ F+A +E+++R +P
Sbjct: 206 -LGSFQFTATSTGQLYEMFSSVMKHLPGPQQQAFKELQGLEDFIAKKVEHNQRTLDPNSP 264
Query: 904 RDFIDAYLPEIEKHKGNATSSFQEK 978
RDFID++L +++ + N + F K
Sbjct: 265 RDFIDSFLIRMQEEEKNPNTEFYLK 289
>ref|NP_000763.1| cytochrome P450 2C18 isoform 1 [Homo sapiens].
Length = 490
Score = 191 bits (484), Expect = 1e-48
Identities = 97/253 (38%), Positives = 149/253 (58%)
Frame = +1
Query: 211 PPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVH 390
P GP LP +GN LDV+ +L F K YG + ++ + VV+ G +KEA +
Sbjct: 30 PSGPTPLPIIGNILQLDVKDMSKSLTNFSKVYGPVFTVYFGLKPIVVLHGYEAVKEALID 89
Query: 391 QDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEA 570
+ F+ R P E+V K G++ SNG+ WKE RRF L TLRNFG+GK+S+E+R+QEEA
Sbjct: 90 HGEEFSGRGSFPVAEKVNKGLGILFSNGKRWKEIRRFCLMTLRNFGMGKRSIEDRVQEEA 149
Query: 571 QYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHT 750
+ L++ + + N P +P F + A N+ICS+ F RFDY+D +F L+ +E +
Sbjct: 150 RCLVEELRKTNASPCDPTFILGCAPCNVICSVIFHDRFDYKDQRFLNLMEKFNENLRILS 209
Query: 751 SVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLP 930
S +Q+ N FP ++ +LPG H + N+ ++ +V I+ H+ + ARDFID +L
Sbjct: 210 SPWIQVCNNFPALIDYLPGSHNKIAENFAYIKSYVLERIKEHQESLDMNSARDFIDCFLI 269
Query: 931 EIEKHKGNATSSF 969
++E+ K N S F
Sbjct: 270 KMEQEKHNQQSEF 282
>ref|NP_000755.2| cytochrome P450 2A7 isoform 1 [Homo sapiens].
Length = 494
Score = 189 bits (481), Expect = 3e-48
Identities = 104/265 (39%), Positives = 160/265 (60%), Gaps = 1/265 (0%)
Frame = +1
Query: 187 KRRSPKNYPPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLP 366
+R+S PPGP LPF+GN+ L+ E ++ +F + YG + ++ VV+ G
Sbjct: 26 QRKSRGKLPPGPTPLPFIGNYLQLNTEHICDSIMKFSECYGPVFTIHLGPRRVVVLCGHD 85
Query: 367 LIKEAFVHQDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSL 546
++EA V Q + F+ R T + VFK G+ SNG+ K+ RFA+ TLR+FG+GK+ +
Sbjct: 86 AVREALVDQAEEFSGRGEQATFDWVFKGYGVAFSNGERAKQLLRFAIATLRDFGVGKRGI 145
Query: 547 EERIQEEAQYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLL 726
EERIQEE+ +LI+AI +G +P F ++ VSN+I SI FG RFDY+D +F LL ++
Sbjct: 146 EERIQEESGFLIEAIRSTHGANIDPTFFLSRTVSNVISSIVFGDRFDYEDKEFLSLLSMM 205
Query: 727 DEVTCQHTSVQV-QLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEA 903
+ Q TS QLY MF +MK LPGP Q F + L+ F+A +E+++R +P
Sbjct: 206 LGI-FQFTSTSTGQLYEMFSSVMKHLPGPQQQAFKLLQGLEDFIAKKVEHNQRTLDPNSP 264
Query: 904 RDFIDAYLPEIEKHKGNATSSFQEK 978
+DFID++L +++ + N + F K
Sbjct: 265 QDFIDSFLIHMQEEEKNPNTEFYLK 289
>ref|NP_000760.1| cytochrome P450 2C19 [Homo sapiens].
Length = 490
Score = 189 bits (479), Expect = 4e-48
Identities = 96/253 (37%), Positives = 147/253 (58%)
Frame = +1
Query: 211 PPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVH 390
PPGP LP +GN +D++ +L K YG + +L + VV+ G ++KEA +
Sbjct: 30 PPGPTPLPVIGNILQIDIKDVSKSLTNLSKIYGPVFTLYFGLERMVVLHGYEVVKEALID 89
Query: 391 QDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEA 570
+ F+ R P ER + G++ SNG+ WKE RRF+L TLRNFG+GK+S+E+R+QEEA
Sbjct: 90 LGEEFSGRGHFPLAERANRGFGIVFSNGKRWKEIRRFSLMTLRNFGMGKRSIEDRVQEEA 149
Query: 571 QYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHT 750
+ L++ + + P +P F + A N+ICSI F KRFDY+D QF L+ L+E +
Sbjct: 150 RCLVEELRKTKASPCDPTFILGCAPCNVICSIIFQKRFDYKDQQFLNLMEKLNENIRIVS 209
Query: 751 SVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLP 930
+ +Q+ N FP I+ + PG H L N ++ + ++ H+ + RDFID +L
Sbjct: 210 TPWIQICNNFPTIIDYFPGTHNKLLKNLAFMESDILEKVKEHQESMDINNPRDFIDCFLI 269
Query: 931 EIEKHKGNATSSF 969
++EK K N S F
Sbjct: 270 KMEKEKQNQQSEF 282
>ref|NP_000765.2| cytochrome P450 2F1 [Homo sapiens].
Length = 491
Score = 189 bits (479), Expect = 4e-48
Identities = 95/263 (36%), Positives = 155/263 (58%)
Frame = +1
Query: 193 RSPKNYPPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLI 372
R PPGP L LGN L + +L + K+YG++ ++ VV++G +
Sbjct: 25 RDKGKLPPGPRPLSILGNLLLLCSQDMLTSLTKLSKEYGSMYTVHLGPRRVVVLSGYQAV 84
Query: 373 KEAFVHQDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEE 552
KEA V Q + F+ R P K NG+ S+G WK R+F++ LRNFG+GK+S+EE
Sbjct: 85 KEALVDQGEEFSGRGDYPAFFNFTKGNGIAFSSGDRWKVLRQFSIQILRNFGMGKRSIEE 144
Query: 553 RIQEEAQYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDE 732
RI EE +L+ + + G+PF+P F ++ +VSNIICS+ FG RFDY D++ ++RL+++
Sbjct: 145 RILEEGSFLLAELRKTEGEPFDPTFVLSRSVSNIICSVLFGSRFDYDDERLLTIIRLIND 204
Query: 733 VTCQHTSVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDF 912
+S +LY++FP ++ ++PGPHQ +F N++ L+ +A + +H+ +P RDF
Sbjct: 205 NFQIMSSPWGELYDIFPSLLDWVPGPHQRIFQNFKCLRDLIAHSVHDHQASLDPRSPRDF 264
Query: 913 IDAYLPEIEKHKGNATSSFQEKT 981
I +L ++ + K + S F T
Sbjct: 265 IQCFLTKMAEEKEDPLSHFHMDT 287
>ref|NP_078790.2| vitamin D 25-hydroxylase [Homo sapiens].
Length = 501
Score = 186 bits (471), Expect = 4e-47
Identities = 105/267 (39%), Positives = 153/267 (57%), Gaps = 3/267 (1%)
Frame = +1
Query: 187 KRRSPKNYPPGPPRLPFLGNFFHLDV--EKGHLALQRFVKKYGNIISLDSSVFSSVVITG 360
K+R P +PPGPP LPF+GN + L E H+ +++ + YG I SLD S+VV+ G
Sbjct: 32 KQRRPMGFPPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNG 91
Query: 361 LPLIKEAFVHQDQHFANRPMIPTQERVFKKNGLIMSN-GQVWKEQRRFALTTLRNFGLGK 537
++KE VHQ + FA+RP +P ++ K GL+ S G+ W + RR A+ + R FG G+
Sbjct: 92 YDVVKECLVHQSEIFADRPCLPLFMKMTKMGGLLNSRYGRGWVDHRRLAVNSFRYFGYGQ 151
Query: 538 KSLEERIQEEAQYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELL 717
KS E +I EE ++ AI G+PF+ I NAVSNI I FG+RF Y+D FQ ++
Sbjct: 152 KSFESKILEETKFFNDAIETYKGRPFDFKQLITNAVSNITNLIIFGERFTYEDTDFQHMI 211
Query: 718 RLLDEVTCQHTSVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPA 897
L E S V LYN FP I G HQ LF N + F++ +IE + P
Sbjct: 212 ELFSENVELAASASVFLYNAFPWIGILPFGKHQQLFRNAAVVYDFLSRLIEKASVNRKPQ 271
Query: 898 EARDFIDAYLPEIEKHKGNATSSFQEK 978
+ F+DAYL E+++ K + +S+F ++
Sbjct: 272 LPQHFVDAYLDEMDQGKNDPSSTFSKE 298
>ref|NP_000762.2| cytochrome P450 2C9 [Homo sapiens].
Length = 490
Score = 185 bits (469), Expect = 6e-47
Identities = 94/253 (37%), Positives = 146/253 (57%)
Frame = +1
Query: 211 PPGPPRLPFLGNFFHLDVEKGHLALQRFVKKYGNIISLDSSVFSSVVITGLPLIKEAFVH 390
PPGP LP +GN + ++ +L K YG + +L + VV+ G +KEA +
Sbjct: 30 PPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALID 89
Query: 391 QDQHFANRPMIPTQERVFKKNGLIMSNGQVWKEQRRFALTTLRNFGLGKKSLEERIQEEA 570
+ F+ R + P ER + G++ SNG+ WKE RRF+L TLRNFG+GK+S+E+R+QEEA
Sbjct: 90 LGEEFSGRGIFPLAERANRGFGIVFSNGKKWKEIRRFSLMTLRNFGMGKRSIEDRVQEEA 149
Query: 571 QYLIQAIGEENGQPFNPHFKINNAVSNIICSITFGKRFDYQDDQFQELLRLLDEVTCQHT 750
+ L++ + + P +P F + A N+ICSI F KRFDY+D QF L+ L+E +
Sbjct: 150 RCLVEELRKTKASPCDPTFILGCAPCNVICSIIFHKRFDYKDQQFLNLMEKLNENIKILS 209
Query: 751 SVQVQLYNMFPRIMKFLPGPHQTLFSNWEKLQIFVACVIENHKRDWNPAEARDFIDAYLP 930
S +Q+ N F I+ + PG H L N ++ ++ ++ H+ + +DFID +L
Sbjct: 210 SPWIQICNNFSPIIDYFPGTHNKLLKNVAFMKSYILEKVKEHQESMDMNNPQDFIDCFLM 269
Query: 931 EIEKHKGNATSSF 969
++EK K N S F
Sbjct: 270 KMEKEKHNQPSEF 282
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,016,178
Number of extensions: 1078060
Number of successful extensions: 4139
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 4106
Number of HSP's successfully gapped: 28
Length of query: 327
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 224
Effective length of database: 14,901,872
Effective search space: 3338019328
Effective search space used: 3338019328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009439
(982 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 537 e-150
gb|GL892766.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 214 7e-53
>Sscrofa_Chr06
|| Length = 157765593
Score = 537 bits (271), Expect = e-150
Identities = 287/291 (98%), Gaps = 1/291 (0%)
Strand = Plus / Minus
Query: 1 gtgggcggtgctaggagtgcagtcagacaagcctggaccgtctttggctcaaaccgcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139929886 gtgggcggtgctaggagtgcagtcagacaagcctggaccgtctttggctcaaaccgcaga 139929827
Query: 61 actgccggagatttcgcagccatgaccccggccttgggcttcctggctgaggctctctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139929826 actgccggagatttcgcagccatgaccccggccttgggcttcctggctgaggctctctgg 139929767
Query: 121 accgctctccgtcccagcactctcctgctgggtgccgtcgcctttctcttctttgccgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139929766 accgctctccgtcccagcactctcctgctgggtgccgtcgcctttctcttctttgccgat 139929707
Query: 181 ttcctcaaaaggcggagcccaaagaactacccgcctgggcccccgcgcctgcctttccta 240
|| ||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 139929706 tt-ctcaaaaagcggagccccaagaactacccgcctgggcccccgcgcctgcttttccta 139929648
Query: 241 ggcaacttcttccatctggacgttgagaagggacacctggcacttcagcgg 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139929647 ggcaacttcttccatctggacgttgagaagggacacctggcacttcagcgg 139929597
Score = 341 bits (172), Expect = 4e-91
Identities = 178/180 (98%)
Strand = Plus / Minus
Query: 763 cagctctacaatatgtttccacgaataatgaaattcctccctggaccccaccaaaccctc 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139914822 cagctctacaatatgtttccacgaataatgaaattcctccctggaccccaccaaaccctc 139914763
Query: 823 ttcagtaactgggagaaattgcaaatatttgttgcctgtgtgattgaaaaccacaagaga 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139914762 ttcagtaactgggagaaattgcaaatatttgttgcctgtgtgattgaaaaccacaagaga 139914703
Query: 883 gattggaatcctgctgaagcaagagatttcattgacgcttacctcccagaaatagaaaag 942
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 139914702 gattggaatcctgctgaagcaagagatttcattgacgcttacctccaggaaatagaaaag 139914643
Score = 319 bits (161), Expect = 2e-84
Identities = 164/165 (99%)
Strand = Plus / Minus
Query: 291 gtttgtgaagaaatacgggaatattattagcctggattccagtgtattttcttcagttgt 350
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139921551 gtttgtgaaggaatacgggaatattattagcctggattccagtgtattttcttcagttgt 139921492
Query: 351 tataactggattgcccttaatcaaagaagcctttgtccatcaagaccaacactttgcaaa 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139921491 tataactggattgcccttaatcaaagaagcctttgtccatcaagaccaacactttgcaaa 139921432
Query: 411 ccgccccatgattcctacccaagaacgtgtctttaagaaaaatgg 455
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139921431 ccgccccatgattcctacccaagaacgtgtctttaagaaaaatgg 139921387
Score = 313 bits (158), Expect = 1e-82
Identities = 161/162 (99%)
Strand = Plus / Minus
Query: 604 ggacagcctttcaaccctcacttcaaaatcaacaatgcagtttccaacatcatttgctcc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139917804 ggacagcctttcaaccctcacttcaaaatcaacaatgcagtttccaacatcatttgctcc 139917745
Query: 664 atcacatttgggaagcggtttgactaccaggatgatcagttccaggagctgctgaggctg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139917744 atcacatttgggaagcggtttgactaccaggatgatcagttccaggagctgctgaggctg 139917685
Query: 724 ttggatgaagtcacatgtcagcacacatcagtgcaggtccag 765
|||||||| |||||||||||||||||||||||||||||||||
Sbjct: 139917684 ttggatgaggtcacatgtcagcacacatcagtgcaggtccag 139917643
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 454 ggattaatcatgtccaatggccaggtatggaaggagcaaagaaggttcgccctgacaaca 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139918339 ggattaatcatgtccaatggccaggtatggaaggagcaaagaaggttcgccctgacaaca 139918280
Query: 514 ctgaggaattttggtttaggaaagaagagcttagaggaacgcattcaggaagaggctcag 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139918279 ctgaggaattttggtttaggaaagaagagcttagaggaacgcattcaggaagaggctcag 139918220
Query: 574 tacctcatccaggcaataggagaggagaacgg 605
||||||||||||||||||||||||||||||||
Sbjct: 139918219 tacctcatccaggcaataggagaggagaacgg 139918188
Score = 274 bits (138), Expect = 9e-71
Identities = 141/142 (99%)
Strand = Plus / Minus
Query: 461 tcatgtccaatggccaggtatggaaggagcaaagaaggttcgccctgacaacactgagga 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139954064 tcatgtccaatggccaggtatggaaggagcaaagaaggttcgccctgacaacactgagga 139954005
Query: 521 attttggtttaggaaagaagagcttagaggaacgcattcaggaagaggctcagtacctca 580
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139954004 actttggtttaggaaagaagagcttagaggaacgcattcaggaagaggctcagtacctca 139953945
Query: 581 tccaggcaataggagaggagaa 602
||||||||||||||||||||||
Sbjct: 139953944 tccaggcaataggagaggagaa 139953923
Score = 270 bits (136), Expect = 1e-69
Identities = 196/216 (90%)
Strand = Plus / Minus
Query: 76 gcagccatgaccccggccttgggcttcctggctgaggctctctggaccgctctccgtccc 135
||||||||| | | ||||||||||| ||||||||||||||||||||| || |||||||||
Sbjct: 139965834 gcagccatgccgctggccttgggctccctggctgaggctctctggacggcgctccgtccc 139965775
Query: 136 agcactctcctgctgggtgccgtcgcctttctcttctttgccgatttcctcaaaaggcgg 195
|||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 139965774 agcactatcctgctgggcgccgtcgcctttctcttctttgctgatttcctcaaaaagcgg 139965715
Query: 196 agcccaaagaactacccgcctgggcccccgcgcctgcctttcctaggcaacttcttccat 255
||||||||||||||||||||||||||||||| || || ||| |||||||| ||||||||
Sbjct: 139965714 cgcccaaagaactacccgcctgggcccccgcggcttcccttcataggcaacctcttccat 139965655
Query: 256 ctggacgttgagaagggacacctggcacttcagcgg 291
|||||| | || |||||||||||| |||||||||||
Sbjct: 139965654 ctggacttagacaagggacacctgtcacttcagcgg 139965619
Score = 256 bits (129), Expect = 2e-65
Identities = 144/149 (96%)
Strand = Plus / Minus
Query: 454 ggattaatcatgtccaatggccaggtatggaaggagcaaagaaggttcgccctgacaaca 513
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139884107 ggattgatcatgtccaatggccaggtatggaaggagcaaagaaggttcgccctgacaaca 139884048
Query: 514 ctgaggaattttggtttaggaaagaagagcttagaggaacgcattcaggaagaggctcag 573
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139884047 ctgaggaactttggtttgggaaagaagagcttagaggaacgcattcaggaagaggctcag 139883988
Query: 574 tacctcatccaggcaataggagaggagaa 602
||||||||||||||| || ||||||||||
Sbjct: 139883987 tacctcatccaggcagtaagagaggagaa 139883959
Score = 210 bits (106), Expect = 1e-51
Identities = 157/174 (90%)
Strand = Plus / Minus
Query: 769 tacaatatgtttccacgaataatgaaattcctccctggaccccaccaaaccctcttcagt 828
|||||||| ||||| | |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 139950000 tacaatatcattccatggataatgaaattccttcctggaccccaccaaaccctcttcagt 139949941
Query: 829 aactgggagaaattgcaaatatttgttgcctgtgtgattgaaaaccacaagagagattgg 888
|| ||||||||| || |||| ||||||||| ||||||||||||||||| |||||| |||
Sbjct: 139949940 aattgggagaaactgaaaatgtttgttgcccatgtgattgaaaaccacaggagagactgg 139949881
Query: 889 aatcctgctgaagcaagagatttcattgacgcttacctcccagaaatagaaaag 942
|||||||||||||||||||| |||||||| |||||||||| ||||||||||||
Sbjct: 139949880 aatcctgctgaagcaagagacttcattgaggcttacctccaggaaatagaaaag 139949827
Score = 200 bits (101), Expect = 1e-48
Identities = 137/149 (91%)
Strand = Plus / Minus
Query: 617 accctcacttcaaaatcaacaatgcagtttccaacatcatttgctccatcacatttggga 676
|||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 139883572 acccacacttcaagatcaacaatgctgtttccaacatcatttgctccatcacatttgggg 139883513
Query: 677 agcggtttgactaccaggatgatcagttccaggagctgctgaggctgttggatgaagtca 736
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 139883512 agcgctttgactaccaggatgatcagttccaggagctgctgaggctgctggatgaggtca 139883453
Query: 737 catgtcagcacacatcagtgcaggtccag 765
|||||| || | |||||||| |||||||
Sbjct: 139883452 catgtctgccaaaatcagtgcgggtccag 139883424
Score = 200 bits (101), Expect = 1e-48
Identities = 173/197 (87%)
Strand = Plus / Minus
Query: 95 tgggcttcctggctgaggctctctggaccgctctccgtcccagcactctcctgctgggtg 154
||||||||||||| |||| | || ||||||| || |||||||| ||||||||||| |||
Sbjct: 139891987 tgggcttcctggcagaggttttcgggaccgcgcttggtcccagcgctctcctgctgagtg 139891928
Query: 155 ccgtcgcctttctcttctttgccgatttcctcaaaaggcggagcccaaagaactacccgc 214
||||||||||||||||| |||| || ||||||||||| || ||||||||||||||||||
Sbjct: 139891927 ccgtcgcctttctcttcgttgctgacatcctcaaaaggtggcgcccaaagaactacccgc 139891868
Query: 215 ctgggcccccgcgcctgcctttcctaggcaacttcttccatctggacgttgagaagggac 274
||||||||| ||||||||| ||| ||||||||||| ||||||||||| ||||| || | |
Sbjct: 139891867 ctgggcccctgcgcctgcccttcgtaggcaacttcctccatctggactttgagcagtggc 139891808
Query: 275 acctggcacttcagcgg 291
||||| |||||||||||
Sbjct: 139891807 acctgtcacttcagcgg 139891791
Score = 192 bits (97), Expect = 3e-46
Identities = 127/137 (92%)
Strand = Plus / Minus
Query: 466 tccaatggccaggtatggaaggagcaaagaaggttcgccctgacaacactgaggaatttt 525
||||| ||||| | |||||||||||||||||||||| |||||| |||||||||||| |||
Sbjct: 140000727 tccaaaggccaagcatggaaggagcaaagaaggttcaccctgaaaacactgaggaacttt 140000668
Query: 526 ggtttaggaaagaagagcttagaggaacgcattcaggaagaggctcagtacctcatccag 585
||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 140000667 ggtttaggataaaagagcttagaggaacgcattcaggaagaggctcaatacctcatccag 140000608
Query: 586 gcaataggagaggagaa 602
|||||| ||||||||||
Sbjct: 140000607 gcaataagagaggagaa 140000591
Score = 190 bits (96), Expect = 1e-45
Identities = 159/180 (88%)
Strand = Plus / Minus
Query: 763 cagctctacaatatgtttccacgaataatgaaattcctccctggaccccaccaaaccctc 822
||||||| |||| | |||||||| ||||||||||| || |||||||||||||||| | ||
Sbjct: 139880962 cagctcttcaatgtctttccacggataatgaaattgcttcctggaccccaccaaatcatc 139880903
Query: 823 ttcagtaactgggagaaattgcaaatatttgttgcctgtgtgattgaaaaccacaagaga 882
|| |||||| |||||||| || ||| ||| ||||| ||||||||||||| |||| ||||
Sbjct: 139880902 tttagtaacagggagaaactgagaatgtttattgcccgtgtgattgaaaatcacaggaga 139880843
Query: 883 gattggaatcctgctgaagcaagagatttcattgacgcttacctcccagaaatagaaaag 942
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 139880842 gattggaatcctgctgaagcaagagacttcattgacgcttacctccgggaaatagaaaag 139880783
Score = 176 bits (89), Expect = 1e-41
Identities = 122/133 (91%)
Strand = Plus / Minus
Query: 604 ggacagcctttcaaccctcacttcaaaatcaacaatgcagtttccaacatcatttgctcc 663
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 139952968 ggacaacctttcaaccctcatttcaaaatcaacaatgctgtttccaacatcatttgctcc 139952909
Query: 664 atcacatttgggaagcggtttgactaccaggatgatcagttccaggagctgctgaggctg 723
||||||||||| | || ||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 139952908 atcacatttggagaacgctttgactaccaggataatcagttccaggagctgctgaagctg 139952849
Query: 724 ttggatgaagtca 736
||||||| ||||
Sbjct: 139952848 ctggatgaggtca 139952836
Score = 159 bits (80), Expect = 3e-36
Identities = 116/128 (90%)
Strand = Plus / Minus
Query: 604 ggacagcctttcaaccctcacttcaaaatcaacaatgcagtttccaacatcatttgctcc 663
|||||||| || ||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 140000114 ggacagccctttgaccctcacttcaaaatcaacaatgcggtttccaatatcatttgctcc 140000055
Query: 664 atcacatttgggaagcggtttgactaccaggatgatcagttccaggagctgctgaggctg 723
||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 140000054 gtcacatttgggaagcactttgactaccaggatgaccagttctgggagctgctgaggctg 139999995
Query: 724 ttggatga 731
|||||||
Sbjct: 139999994 ctggatga 139999987
Score = 145 bits (73), Expect = 5e-32
Identities = 136/157 (86%)
Strand = Plus / Minus
Query: 291 gtttgtgaagaaatacgggaatattattagcctggattccagtgtattttcttcagttgt 350
||||||||||||||| |||||| || |||||||||||| ||| ||| ||||| |||||
Sbjct: 139957002 gtttgtgaagaaatatgggaatgtttttagcctggattttggtgcattgtcttctgttgt 139956943
Query: 351 tataactggattgcccttaatcaaagaagcctttgtccatcaagaccaacactttgcaaa 410
|||||||||||||| || ||||||||||||||||||||||| ||| || ||||| ||||
Sbjct: 139956942 cataactggattgcctttcatcaaagaagcctttgtccatcaggacaaaaacttttcaaa 139956883
Query: 411 ccgccccatgattcctacccaagaacgtgtctttaag 447
||||||||| | |||| |||| ||||||||||||||
Sbjct: 139956882 ccgccccatagtccctatccaacaacgtgtctttaag 139956846
Score = 97.6 bits (49), Expect = 1e-17
Identities = 151/185 (81%)
Strand = Plus / Minus
Query: 77 cagccatgaccccggccttgggcttcctggctgaggctctctggaccgctctccgtccca 136
|||||||| ||||| |||||||| ||||| | ||| ||||||||| | |||| | ||
Sbjct: 140011339 cagccatgctcccggtcttgggctccctggtgggggcgctctggacctcactccataccc 140011280
Query: 137 gcactctcctgctgggtgccgtcgcctttctcttctttgccgatttcctcaaaaggcgga 196
||| || ||| || |||| || ||| ||||||||||||| ||||| ||||||||| |
Sbjct: 140011279 acacgcttctgttgagtgctgtagcccttctcttctttgctgattttatcaaaaggcagc 140011220
Query: 197 gcccaaagaactacccgcctgggcccccgcgcctgcctttcctaggcaacttcttccatc 256
|||||||||||||||| |||||||| || ||||||| ||| ||||||||| |||| |||
Sbjct: 140011219 gcccaaagaactacccacctgggccaccaagcctgcccttcataggcaactacttctatc 140011160
Query: 257 tggac 261
|||||
Sbjct: 140011159 tggac 140011155
Score = 93.7 bits (47), Expect = 2e-16
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 291 gtttgtgaagaaatacgggaatattattagcctggattccagtgtattttcttcagttgt 350
||||||||| ||||| |||||| || | |||||||||| ||| ||||||||||||||
Sbjct: 139885783 gtttgtgaaaaaatatgggaatgttttgagcctggatttaggtgccttttcttcagttgt 139885724
Query: 351 tataactggattgcccttaatcaaaga 377
|||||||||||||||||||||||||||
Sbjct: 139885723 tataactggattgcccttaatcaaaga 139885697
Score = 73.8 bits (37), Expect = 2e-10
Identities = 40/41 (97%)
Strand = Plus / Minus
Query: 787 ataatgaaattcctccctggaccccaccaaaccctcttcag 827
|||||||||||||| ||||||||||||||||||||||||||
Sbjct: 139992843 ataatgaaattccttcctggaccccaccaaaccctcttcag 139992803
Score = 67.9 bits (34), Expect = 1e-08
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 941 agcataagggcaatgctacttcaagtttccagga 974
||||||||||||||||||||||||||||||||||
Sbjct: 139912834 agcataagggcaatgctacttcaagtttccagga 139912801
>gb|GL892766.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1599
Length = 33494
Score = 214 bits (108), Expect = 7e-53
Identities = 162/180 (90%)
Strand = Plus / Minus
Query: 763 cagctctacaatatgtttccacgaataatgaaattcctccctggaccccaccaaaccctc 822
||||||| |||| | |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 11713 cagctcttcaatgtctttccacggataatgaaattccttcctggaccccaccaaaccctc 11654
Query: 823 ttcagtaactgggagaaattgcaaatatttgttgcctgtgtgattgaaaaccacaagaga 882
|||||| | ||||||||| || |||| ||| ||||| |||||||||||||||||| ||||
Sbjct: 11653 ttcagtgattgggagaaactggaaatgtttattgcccgtgtgattgaaaaccacaggaga 11594
Query: 883 gattggaatcctgctgaagcaagagatttcattgacgcttacctcccagaaatagaaaag 942
|| ||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||
Sbjct: 11593 gactggaatcctgctgaagcaagagacttcattgatgcttacctccaggaaatagaaaag 11534
Score = 210 bits (106), Expect = 1e-51
Identities = 130/138 (94%)
Strand = Plus / Minus
Query: 465 gtccaatggccaggtatggaaggagcaaagaaggttcgccctgacaacactgaggaattt 524
||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||
Sbjct: 14240 gtccagtggccaggtatggaaggagcaaagaaggttcaccctgacaacactaaggaactt 14181
Query: 525 tggtttaggaaagaagagcttagaggaacgcattcaggaagaggctcagtacctcatcca 584
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 14180 tggtttaggaaaaaagagcttagaggaacgcattcaggaagaggctcaatacctcaccca 14121
Query: 585 ggcaataggagaggagaa 602
|||||||||||||||||
Sbjct: 14120 agcaataggagaggagaa 14103
Score = 202 bits (102), Expect = 3e-49
Identities = 126/134 (94%)
Strand = Plus / Minus
Query: 604 ggacagcctttcaaccctcacttcaaaatcaacaatgcagtttccaacatcatttgctcc 663
|||||||||||||||||||| |||||||||| ||| ||||||||||| ||||||||||||
Sbjct: 13719 ggacagcctttcaaccctcaattcaaaatcagcaacgcagtttccaatatcatttgctcc 13660
Query: 664 atcacatttgggaagcggtttgactaccaggatgatcagttccaggagctgctgaggctg 723
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13659 atcacatttgggaagcgctttgactaccaggatgatcagttccaggagctgctgaggctg 13600
Query: 724 ttggatgaagtcac 737
|| |||||||||
Sbjct: 13599 ctgcgtgaagtcac 13586
Score = 113 bits (57), Expect = 2e-22
Identities = 81/89 (91%)
Strand = Plus / Minus
Query: 199 ccaaagaactacccgcctgggcccccgcgcctgcctttcctaggcaacttcttccatctg 258
||||||||||||||||||||||| | ||||||||||||| | |||||| |||||||||||
Sbjct: 24020 ccaaagaactacccgcctgggcctctgcgcctgcctttcgtgggcaacctcttccatctg 23961
Query: 259 gacgttgagaagggacacctggcacttca 287
||| ||||||||| ||||||| |||||||
Sbjct: 23960 gactttgagaaggcacacctgtcacttca 23932
Score = 109 bits (55), Expect = 3e-21
Identities = 133/159 (83%)
Strand = Plus / Minus
Query: 291 gtttgtgaagaaatacgggaatattattagcctggattccagtgtattttcttcagttgt 350
||||||||||||||| || || || |||||||||||| ||| || ||| |||||||
Sbjct: 17602 gtttgtgaagaaatatggaaacatctttagcctggatttatgtgccttatctgcagttgt 17543
Query: 351 tataactggattgcccttaatcaaagaagcctttgtccatcaagaccaacactttgcaaa 410
| ||||||||||||| ||||||||||||| |||||||||| ||||| | ||||||||
Sbjct: 17542 tgtaactggattgcctttaatcaaagaagttcttgtccatcagaaccaaaagtttgcaaa 17483
Query: 411 ccgccccatgattcctacccaagaacgtgtctttaagaa 449
||||||||| | |||| |||||| ||||||||||||||
Sbjct: 17482 ccgccccatactccctatccaagatcgtgtctttaagaa 17444
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,699,644
Number of extensions: 187
Number of successful extensions: 187
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 25
Length of query: 982
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 961
Effective length of database: 2,808,413,156
Effective search space: 2698885042916
Effective search space used: 2698885042916
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)