Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009452
(1155 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193467.1| poly [ADP-ribose] polymerase 14 [Bos taurus]. 107 2e-23
>ref|NP_001193467.1| poly [ADP-ribose] polymerase 14 [Bos taurus].
Length = 1797
Score = 107 bits (267), Expect = 2e-23
Identities = 49/62 (79%), Positives = 54/62 (87%)
Frame = +1
Query: 46 MSEPGSFPLLVEGSWGPDPPKNLSTKLQLYFQSPKKSGGGECEVLQEPGSPSRFLVLFYP 225
M+ PGSFPLLVEGSWG PPKNLSTKLQ+YFQS K+SGGGECEV PGS +RFLVLFYP
Sbjct: 1 MAAPGSFPLLVEGSWGSQPPKNLSTKLQMYFQSRKRSGGGECEVCPVPGSSNRFLVLFYP 60
Query: 226 ND 231
+D
Sbjct: 61 DD 62
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,920,882
Number of extensions: 1616964
Number of successful extensions: 7490
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7398
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 281
Effective length of database: 14,240,222
Effective search space: 4001502382
Effective search space used: 4001502382
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009452
(1155 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850880.1| PREDICTED: similar to poly (ADP-ribose) polymer... 127 2e-29
>ref|XP_850880.1| PREDICTED: similar to poly (ADP-ribose) polymerase family, member
14 [Canis familiaris].
Length = 1946
Score = 127 bits (319), Expect = 2e-29
Identities = 88/209 (42%), Positives = 104/209 (49%), Gaps = 1/209 (0%)
Frame = +1
Query: 46 MSEPGSFPLLVEGSWGPDPPKNLSTKLQLYFQSPKKSGGGECEVLQEPGSPSRFLVLFYP 225
M+ PGSFPLLVEGSWGPDPP++L TKLQLYFQS ++SGGG CE L+EPGSP RFLV+F+
Sbjct: 1 MAAPGSFPLLVEGSWGPDPPESLPTKLQLYFQSARRSGGGACEFLREPGSPPRFLVVFHL 60
Query: 226 NDGEGDKGAGEWGQVGSPSREDLWLGHAACGRIQPVPXXXXXXXXXXXMDNVHASRAVSF 405
DGEG G G+ GQ GSP + G + P P SR ++
Sbjct: 61 EDGEGFTGCGDPGQRGSPPK----------GGLPPPPGHTAGRPRRAGARAAERSRRAAW 110
Query: 406 QALLEAATDRAGELNQHLAPGHKGAS*EQVHPPYFTRLPRVLLAELQCHCSFGLPPMKAS 585
+ T R G PP VL AE C LP
Sbjct: 111 R---WRQTGRPGS------------------PP-----RGVLAAESLFRCWAFLPGR--- 141
Query: 586 VLEFQRFLGTQFEGKRKFP-GRVTSKLTP 669
+ QRF G QF+G RK P RV SK P
Sbjct: 142 --QLQRFEGAQFKGARKCPRRRVLSKRIP 168
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,195,020
Number of extensions: 1669797
Number of successful extensions: 7820
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7726
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 280
Effective length of database: 15,374,224
Effective search space: 4304782720
Effective search space used: 4304782720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009452
(1155 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001924643.3| PREDICTED: poly [ADP-ribose] polymerase 14, ... 134 7e-32
Alignment gi|XP_003358837.1| PREDICTED: poly [ADP-ribose] polymerase 14-l... 134 7e-32
>ref|XP_001924643.3| PREDICTED: poly [ADP-ribose] polymerase 14, partial [Sus scrofa].
Length = 1169
Score = 134 bits (338), Expect = 7e-32
Identities = 62/62 (100%), Positives = 62/62 (100%)
Frame = +1
Query: 46 MSEPGSFPLLVEGSWGPDPPKNLSTKLQLYFQSPKKSGGGECEVLQEPGSPSRFLVLFYP 225
MSEPGSFPLLVEGSWGPDPPKNLSTKLQLYFQSPKKSGGGECEVLQEPGSPSRFLVLFYP
Sbjct: 1 MSEPGSFPLLVEGSWGPDPPKNLSTKLQLYFQSPKKSGGGECEVLQEPGSPSRFLVLFYP 60
Query: 226 ND 231
ND
Sbjct: 61 ND 62
>ref|XP_003358837.1| PREDICTED: poly [ADP-ribose] polymerase 14-like [Sus scrofa].
Length = 1713
Score = 134 bits (338), Expect = 7e-32
Identities = 62/62 (100%), Positives = 62/62 (100%)
Frame = +1
Query: 46 MSEPGSFPLLVEGSWGPDPPKNLSTKLQLYFQSPKKSGGGECEVLQEPGSPSRFLVLFYP 225
MSEPGSFPLLVEGSWGPDPPKNLSTKLQLYFQSPKKSGGGECEVLQEPGSPSRFLVLFYP
Sbjct: 1 MSEPGSFPLLVEGSWGPDPPKNLSTKLQLYFQSPKKSGGGECEVLQEPGSPSRFLVLFYP 60
Query: 226 ND 231
ND
Sbjct: 61 ND 62
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,453,113
Number of extensions: 1068453
Number of successful extensions: 4981
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4874
Number of HSP's successfully gapped: 2
Length of query: 385
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 284
Effective length of database: 8,829,335
Effective search space: 2507531140
Effective search space used: 2507531140
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009452
(1155 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001034619.2| poly [ADP-ribose] polymerase 14 [Mus musculu... 105 7e-23
>ref|NP_001034619.2| poly [ADP-ribose] polymerase 14 [Mus musculus].
Length = 1817
Score = 105 bits (262), Expect = 7e-23
Identities = 48/62 (77%), Positives = 53/62 (85%)
Frame = +1
Query: 46 MSEPGSFPLLVEGSWGPDPPKNLSTKLQLYFQSPKKSGGGECEVLQEPGSPSRFLVLFYP 225
M+ GSFPLLVEGSWGPDPPKNL KLQ+YFQS KKSGGGECEV+ EPG+P+RF VLF P
Sbjct: 1 MAASGSFPLLVEGSWGPDPPKNLINKLQVYFQSRKKSGGGECEVVPEPGNPARFRVLFSP 60
Query: 226 ND 231
D
Sbjct: 61 ED 62
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,458,432
Number of extensions: 1310495
Number of successful extensions: 5906
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5826
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 282
Effective length of database: 12,523,851
Effective search space: 3531725982
Effective search space used: 3531725982
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009452
(1155 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060024.2| poly [ADP-ribose] polymerase 14 [Homo sapiens]. 117 2e-26
>ref|NP_060024.2| poly [ADP-ribose] polymerase 14 [Homo sapiens].
Length = 1801
Score = 117 bits (293), Expect = 2e-26
Identities = 52/62 (83%), Positives = 57/62 (91%)
Frame = +1
Query: 46 MSEPGSFPLLVEGSWGPDPPKNLSTKLQLYFQSPKKSGGGECEVLQEPGSPSRFLVLFYP 225
M+ PGSFPLLVEGSWGPDPPKNL+TKLQ+YFQSPK+SGGGECEV Q+P SPSRFLV FYP
Sbjct: 1 MAVPGSFPLLVEGSWGPDPPKNLNTKLQMYFQSPKRSGGGECEVRQDPRSPSRFLVFFYP 60
Query: 226 ND 231
D
Sbjct: 61 ED 62
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,787,762
Number of extensions: 1606239
Number of successful extensions: 7427
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7342
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 281
Effective length of database: 14,868,908
Effective search space: 4178163148
Effective search space used: 4178163148
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009452
(1155 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1659 0.0
Sscrofa_Chr04 100 3e-18
>Sscrofa_Chr13
|| Length = 218635234
Score = 1659 bits (837), Expect = 0.0
Identities = 965/1015 (95%), Gaps = 4/1015 (0%)
Strand = Plus / Minus
Query: 1 gttggggagggaccggcagtcgcagttgaacctgcgaaggtgagaatgtctgagcctggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147483543 gttggggagggaccggcagtcgcagttgaacctgcgaaggtgagaatgtctgagcctggc 147483484
Query: 61 tccttccctctgctggttgaagggtcctggggccccgacccgccgaagaacttgagcacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147483483 tccttccctctgctggttgaagggtcctggggccccgacccgccgaagaacttgagcacc 147483424
Query: 121 aagttgcagttgtacttccagagcccgaagaaatcaggaggcggggagtgtgaggtcctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147483423 aagttgcagttgtacttccagagcccgaagaaatcaggaggcggggagtgtgaggtcctc 147483364
Query: 181 caggaaccggggagcccatcccgcttcctagtgctcttctatcccaatgatggtgagggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147483363 caggaaccggggagcccatcccgcttcctagtgctcttctatcccaatgatggtgagggg 147483304
Query: 241 gacaagggtgcgggtgagtggggacaggtgggctcgccttctagggaagacctatggctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147483303 gacaagggtgcgggtgagtggggacaggtgggctcgccttctagggaagacctatggctg 147483244
Query: 301 gggcacgctgcctgcgggagaatcca-gccggttccggccgcagcgtagcgggggcgcgg 359
||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 147483243 gggcacgctgcctgccggagaatccaagccggttccggccgcagcgtaacgggggcgcgg 147483184
Query: 360 ggggcgcagaatggac-aatgtgcatgcgtcgcgggcggtgagcttccaggcgctcttgg 418
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147483183 ggggcgcagaatggaccaatgtgcatgcgtcgcgggcggtgagcttccaggcgctcttgg 147483124
Query: 419 aggcggcgacggaccgcgcaggtgagttaaatcaacatttagctccaggacataaaggag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147483123 aggcggcgacggaccgcgcaggtgagttaaatcaacatttagctccaggacataaaggag 147483064
Query: 479 cctcctgagagcaggtgcacccgccttattttacgaggctacctcgtgtgttattggcag 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147483063 cctcctgagagcaggtgcacccgccttattttacgaggctacctcgtgtgttattggcag 147483004
Query: 539 agttgcaatgccattgcagttttggacttcctcctatgaaagcatcggttctggaattcc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147483003 agttgcaatgccattgcagttttggacttcctcctatgaaagcatcggttctggaattcc 147482944
Query: 599 agaggtttctgggaacacagtttgaagggaagagaaagtttccagggagagtcacatcta 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147482943 agaggtttctgggaacacagtttgaagggaagagaaagtttccagggagagtcacatcta 147482884
Query: 659 aactgactcctgagagtgaattcaggtcttgatacgcgagatgagatattgagccaggct 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147482883 aactgactcctgagagtgaattcaggtcttgatacgcgagatgagatattgagccaggct 147482824
Query: 719 cttccgatgggaactgcagtgctggaggctggaaagcgaaggcgtctatgcagggaagtt 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147482823 cttccgatgggaactgcagtgctggaggctggaaagcgaaggcgtctatgcagggaagtt 147482764
Query: 779 caaggcgccctccaatccctgatatgctgcnnnnnnnnnnnnnnnnnnnnncagagagcg 838
|||||||||||||||||||||||||||||| |||||||||
Sbjct: 147482763 caaggcgccctccaatccctgatatgctgcgggggtggggtggggtgggggcagagagcg 147482704
Query: 839 ccttgcactgtggtttgaggagtgagcccccatctgttcgctgtgcacgagtgaggtctg 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147482703 ccttgcactgtggtttgaggagtgagcccccatctgttcgctgtgcacgagtgaggtctg 147482644
Query: 899 gagaccaccactnnnnnnnnnnnnnnnnncgtgggggtctgggaaattttatccgatt-t 957
||||||| |||| |||| |||||||||||||||||| ||||| |
Sbjct: 147482643 gagaccagcactaaaaaaaaaaacaaaaacgtgtgggtctgggaaattttatgcgattat 147482584
Query: 958 aaaggggcccttgtatttaaaaaa-tcttcgggcttctcttattaaacccccttt 1011
||||||| |||||||||||||||| ||||||| |||||||||||||||| |||||
Sbjct: 147482583 aaaggggtccttgtatttaaaaaagtcttcggtcttctcttattaaaccaccttt 147482529
>Sscrofa_Chr04
|| Length = 143465943
Score = 99.6 bits (50), Expect = 3e-18
Identities = 74/82 (90%)
Strand = Plus / Minus
Query: 587 ttctggaattccagaggtttctgggaacacagtttgaagggaagagaaagtttccaggga 646
|||| |||||||| |||||| ||||||| || ||| ||||||||||||||||||||||||
Sbjct: 132200959 ttctagaattccaaaggtttgtgggaacccaattttaagggaagagaaagtttccaggga 132200900
Query: 647 gagtcacatctaaactgactcc 668
|||| |||||||| ||||||||
Sbjct: 132200899 gagttacatctaacctgactcc 132200878
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,645,158
Number of extensions: 168
Number of successful extensions: 168
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 4
Length of query: 1155
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1134
Effective length of database: 2,808,413,156
Effective search space: 3184740518904
Effective search space used: 3184740518904
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)