Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009456
(1050 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071411.1| extended synaptotagmin-1 [Bos taurus]. 496 e-140
Alignment gi|XP_002685096.1| PREDICTED: extended synaptotagmin-like prote... 248 6e-66
Alignment gi|XP_608622.4| PREDICTED: extended synaptotagmin-like protein ... 248 6e-66
>ref|NP_001071411.1| extended synaptotagmin-1 [Bos taurus].
Length = 1106
Score = 496 bits (1277), Expect = e-140
Identities = 254/276 (92%), Positives = 260/276 (94%)
Frame = +1
Query: 175 QSSGNQXXXXXXXXEALAVLTSFGRRLLVLVPVYLAGAMGLSVGFVLFGLALYLGWRRVR 354
QSSG+Q EALAVLTSFGRRLLVLVPVYLAGAMGLSVGFVLFGLALYLGWRRVR
Sbjct: 40 QSSGDQPAGPGAAGEALAVLTSFGRRLLVLVPVYLAGAMGLSVGFVLFGLALYLGWRRVR 99
Query: 355 EEKERSLRVAQQLLEDEERLTAKTLYMSQRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQ 534
EEKERSLRVA+QLL+DEERLTAKTLYMS RELPAWVSFPDVEKAEWLNKIVAQVWPFLGQ
Sbjct: 100 EEKERSLRVARQLLDDEERLTAKTLYMSHRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQ 159
Query: 535 YMEKLLAETVAPAVRGSNPHLQTFTFTRVELGEKPLRILGVKVHPGQRKEQILLDLNISY 714
YMEKLLAETVAPAVRGSNPHLQTFTFTRVELGEKPLRILGVKVH GQ K+QILLDLNISY
Sbjct: 160 YMEKLLAETVAPAVRGSNPHLQTFTFTRVELGEKPLRILGVKVHTGQSKKQILLDLNISY 219
Query: 715 VGDVQIDVEVKKYFCKAGVKGMQLHGVLRVILEPLIGDLPIVGAVSMFFIRRPTLDINWT 894
VGD+QIDVEVKKYFCKAGVKGMQLHGVLRVILEPL+GDLPIVGAVSMFFIRRPTLDINWT
Sbjct: 220 VGDLQIDVEVKKYFCKAGVKGMQLHGVLRVILEPLMGDLPIVGAVSMFFIRRPTLDINWT 279
Query: 895 GMTNLLDIPGLSSLSDTMIMDSIAAFLVLXXRYWCP 1002
GMTNLLDIPGLSSLSDTMIMDSIAAFLVL R P
Sbjct: 280 GMTNLLDIPGLSSLSDTMIMDSIAAFLVLPNRLLVP 315
>ref|XP_002685096.1| PREDICTED: extended synaptotagmin-like protein 3 [Bos taurus].
Length = 870
Score = 248 bits (633), Expect = 6e-66
Identities = 126/264 (47%), Positives = 181/264 (68%), Gaps = 2/264 (0%)
Frame = +1
Query: 217 EALAVLTSFGRRLLV-LVPVYLAGAMGLSVGFVLFGLALYLGWRRVREEKERSLRVAQQL 393
+ L L +F R+L L PVYLAG +GLS+ ++L G+ L++ WRR R K L A +
Sbjct: 27 QLLPELYAFAARVLFCLAPVYLAGYLGLSITWLLLGVLLWMWWRRNRRGKLGRLAAAFEF 86
Query: 394 LEDEERLTAKTLYMSQRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPA 573
L++E + ++ L + LPAW+ FPDVE+ EW NKI++Q+WP+L ME E + P
Sbjct: 87 LDNERQFISRELL--GQHLPAWIHFPDVERVEWANKIISQIWPYLSMIMENKFREKLEPK 144
Query: 574 VRGSNPHLQTFTFTRVELGEKPLRILGVKVHPGQR-KEQILLDLNISYVGDVQIDVEVKK 750
+R + HL+TFTFT++ G+K R+ GVK H QR + Q++LDL I Y+GD +I+VE++K
Sbjct: 145 IREKSMHLRTFTFTKLYFGQKCPRVNGVKTHTDQRNRRQVVLDLQICYIGDCEINVELQK 204
Query: 751 YFCKAGVKGMQLHGVLRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGMTNLLDIPGLS 930
+AGV G+QL G LR+ILEPL+ D P VGAV+MFF+++P L INWTG+TNLLD PG++
Sbjct: 205 I--QAGVNGIQLQGTLRIILEPLLVDKPFVGAVTMFFLQKPHLQINWTGLTNLLDAPGIN 262
Query: 931 SLSDTMIMDSIAAFLVLXXRYWCP 1002
++D+++ D IAA LVL R P
Sbjct: 263 EMTDSLLEDLIAAHLVLPNRVTVP 286
>ref|XP_608622.4| PREDICTED: extended synaptotagmin-like protein 3 [Bos taurus].
Length = 820
Score = 248 bits (633), Expect = 6e-66
Identities = 126/264 (47%), Positives = 181/264 (68%), Gaps = 2/264 (0%)
Frame = +1
Query: 217 EALAVLTSFGRRLLV-LVPVYLAGAMGLSVGFVLFGLALYLGWRRVREEKERSLRVAQQL 393
+ L L +F R+L L PVYLAG +GLS+ ++L G+ L++ WRR R K L A +
Sbjct: 27 QLLPELYAFAARVLFCLAPVYLAGYLGLSITWLLLGVLLWMWWRRNRRGKLGRLAAAFEF 86
Query: 394 LEDEERLTAKTLYMSQRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPA 573
L++E + ++ L + LPAW+ FPDVE+ EW NKI++Q+WP+L ME E + P
Sbjct: 87 LDNERQFISRELL--GQHLPAWIHFPDVERVEWANKIISQIWPYLSMIMENKFREKLEPK 144
Query: 574 VRGSNPHLQTFTFTRVELGEKPLRILGVKVHPGQR-KEQILLDLNISYVGDVQIDVEVKK 750
+R + HL+TFTFT++ G+K R+ GVK H QR + Q++LDL I Y+GD +I+VE++K
Sbjct: 145 IREKSMHLRTFTFTKLYFGQKCPRVNGVKTHTDQRNRRQVVLDLQICYIGDCEINVELQK 204
Query: 751 YFCKAGVKGMQLHGVLRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGMTNLLDIPGLS 930
+AGV G+QL G LR+ILEPL+ D P VGAV+MFF+++P L INWTG+TNLLD PG++
Sbjct: 205 I--QAGVNGIQLQGTLRIILEPLLVDKPFVGAVTMFFLQKPHLQINWTGLTNLLDAPGIN 262
Query: 931 SLSDTMIMDSIAAFLVLXXRYWCP 1002
++D+++ D IAA LVL R P
Sbjct: 263 EMTDSLLEDLIAAHLVLPNRVTVP 286
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,329,551
Number of extensions: 990617
Number of successful extensions: 3216
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3210
Number of HSP's successfully gapped: 3
Length of query: 350
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,273,310
Effective search space: 3525507570
Effective search space used: 3525507570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009456
(1050 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531630.2| PREDICTED: similar to family with sequence simi... 341 8e-94
Alignment gi|XP_542806.2| PREDICTED: similar to chr3 synaptotagmin [Canis... 241 1e-63
>ref|XP_531630.2| PREDICTED: similar to family with sequence similarity 62 (C2 domain
containing), member A [Canis familiaris].
Length = 1118
Score = 341 bits (874), Expect = 8e-94
Identities = 202/310 (65%), Positives = 220/310 (70%), Gaps = 22/310 (7%)
Frame = +1
Query: 175 QSSGNQXXXXXXXXEALAVLTSFGRRLLVLVPVYLAGAMGLSVGFVLFGLALYLGWRRVR 354
++SGNQ EALA+LTSFGRRLLVLVPVYLAGA+GLSVGFVLFGLALYLGWRRVR
Sbjct: 32 RTSGNQPAGPGAAAEALALLTSFGRRLLVLVPVYLAGAVGLSVGFVLFGLALYLGWRRVR 91
Query: 355 EEKERSLRVAQQLL--------EDEERLT-AKTLYMSQRELPAW---------VSFPDVE 480
+ KERSLR A+QLL +DEE + A+T +S RELPA VS PD
Sbjct: 92 DGKERSLRAARQLLGPTSRTGLDDEEPASRAQTRRLSHRELPALGEAEPPAAGVSLPDPA 151
Query: 481 KAEWLNKIVAQVWPFL---GQYMEKLLAETVAPAVRGSNPHLQTFTFTRVELGEKPLRIL 651
++ WP L + E LL T P G+ +T R + PLRI+
Sbjct: 152 RSSQCRGGAGAAWPALPAPASWSEPLLPRTPRPRPPGA----RTAQRDRTSGNQPPLRIV 207
Query: 652 GVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKAGVKGMQLHGVLRVILEPLIGDL 831
GVKVH GQ KEQILLDL+ISYVGDVQIDVEVKKYFCKAGVKGMQLHGVLRVILEPLIGDL
Sbjct: 208 GVKVHAGQSKEQILLDLSISYVGDVQIDVEVKKYFCKAGVKGMQLHGVLRVILEPLIGDL 267
Query: 832 PIVGAVSMFFIRRPTLDINWTGMTNLLDIPGLSSLSDTMIMDSIAAFLVLXXRYWCPCAL 1011
PIVGAVSMFFIRRPTLDINWTGMTNLLDIPGLSSLSDTMIMDSIAAFLVL R P
Sbjct: 268 PIVGAVSMFFIRRPTLDINWTGMTNLLDIPGLSSLSDTMIMDSIAAFLVLPNRLLVPLVP 327
Query: 1012 TSR-RGQLRS 1038
R QLRS
Sbjct: 328 DLRDAAQLRS 337
>ref|XP_542806.2| PREDICTED: similar to chr3 synaptotagmin [Canis familiaris].
Length = 882
Score = 241 bits (614), Expect = 1e-63
Identities = 122/257 (47%), Positives = 171/257 (66%), Gaps = 1/257 (0%)
Frame = +1
Query: 235 TSFGRRLLVLVPVYLAGAMGLSVGFVLFGLALYLGWRRVREEKERSLRVAQQLLEDEERL 414
T R L L VYLAG +GLS+ ++L G L++ WRR R K L A Q L++E +
Sbjct: 33 TFVARVLFYLXSVYLAGYLGLSITWLLLGALLWMWWRRNRRGKLGRLAAAFQFLDNERQF 92
Query: 415 TAKTLYMSQRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPH 594
++ L + LPAW+ FPDVE+ EW NKI++Q+WP+L ME E + P +R + H
Sbjct: 93 ISREL--RGQHLPAWIHFPDVERVEWANKIISQIWPYLSMIMENKFREKLEPKIREKSSH 150
Query: 595 LQTFTFTRVELGEKPLRILGVKVHPGQR-KEQILLDLNISYVGDVQIDVEVKKYFCKAGV 771
L+TFTFT++ G+K R+ GVK H +R + Q++LDL I Y+GD +I E++K +AGV
Sbjct: 151 LRTFTFTKLYFGQKCPRVNGVKAHTNKRNRRQVVLDLQICYIGDCEISAELQKI--QAGV 208
Query: 772 KGMQLHGVLRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGMTNLLDIPGLSSLSDTMI 951
G+QL G LRVILEPL+ D P VGAV++FF+++P L INWTG+TNLLD PG++ +SD+++
Sbjct: 209 NGIQLQGTLRVILEPLLVDKPFVGAVTVFFLQKPHLQINWTGLTNLLDAPGINEISDSLL 268
Query: 952 MDSIAAFLVLXXRYWCP 1002
D IA LVL R P
Sbjct: 269 EDLIATHLVLPNRVTVP 285
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,941,579
Number of extensions: 1017248
Number of successful extensions: 3218
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3214
Number of HSP's successfully gapped: 2
Length of query: 350
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 246
Effective length of database: 15,407,560
Effective search space: 3790259760
Effective search space used: 3790259760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009456
(1050 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126311.1| PREDICTED: extended synaptotagmin-1-like iso... 522 e-148
Alignment gi|XP_003126310.1| PREDICTED: extended synaptotagmin-1-like iso... 522 e-148
Alignment gi|XP_003358619.1| PREDICTED: extended synaptotagmin-3 [Sus scr... 245 3e-65
Alignment gi|XP_003134564.2| PREDICTED: WD repeat-containing protein 60-l... 54 2e-07
>ref|XP_003126311.1| PREDICTED: extended synaptotagmin-1-like isoform 2 [Sus scrofa].
Length = 1110
Score = 522 bits (1344), Expect = e-148
Identities = 272/309 (88%), Positives = 273/309 (88%)
Frame = +1
Query: 76 MERSPADRSSPVXXXXXXXXXXXXXXXXXXXXXQSSGNQXXXXXXXXEALAVLTSFGRRL 255
MERSP DRSSPV QSSGNQ EALAVLTSFGRR+
Sbjct: 1 MERSPGDRSSPVDQPYAPSDPPDQPPVAPTKPDQSSGNQPAGPSAAGEALAVLTSFGRRM 60
Query: 256 LVLVPVYLAGAMGLSVGFVLFGLALYLGWRRVREEKERSLRVAQQLLEDEERLTAKTLYM 435
LVLVPVYLAGAMGLSVGFVLFGLALYLGWRRVREEKERSL VAQQLLEDEERLTAKTLYM
Sbjct: 61 LVLVPVYLAGAMGLSVGFVLFGLALYLGWRRVREEKERSLPVAQQLLEDEERLTAKTLYM 120
Query: 436 SQRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPHLQTFTFT 615
SQRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPHLQTFTFT
Sbjct: 121 SQRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPHLQTFTFT 180
Query: 616 RVELGEKPLRILGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKAGVKGMQLHGV 795
RVELGEKPLRILGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKAGVKGMQLHGV
Sbjct: 181 RVELGEKPLRILGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKAGVKGMQLHGV 240
Query: 796 LRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGMTNLLDIPGLSSLSDTMIMDSIAAFL 975
LRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGMTNLLDIPGLSSLSDTMIMDSIAAFL
Sbjct: 241 LRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGMTNLLDIPGLSSLSDTMIMDSIAAFL 300
Query: 976 VLXXRYWCP 1002
VL R P
Sbjct: 301 VLPNRLLVP 309
>ref|XP_003126310.1| PREDICTED: extended synaptotagmin-1-like isoform 1 [Sus scrofa].
Length = 1100
Score = 522 bits (1344), Expect = e-148
Identities = 272/309 (88%), Positives = 273/309 (88%)
Frame = +1
Query: 76 MERSPADRSSPVXXXXXXXXXXXXXXXXXXXXXQSSGNQXXXXXXXXEALAVLTSFGRRL 255
MERSP DRSSPV QSSGNQ EALAVLTSFGRR+
Sbjct: 1 MERSPGDRSSPVDQPYAPSDPPDQPPVAPTKPDQSSGNQPAGPSAAGEALAVLTSFGRRM 60
Query: 256 LVLVPVYLAGAMGLSVGFVLFGLALYLGWRRVREEKERSLRVAQQLLEDEERLTAKTLYM 435
LVLVPVYLAGAMGLSVGFVLFGLALYLGWRRVREEKERSL VAQQLLEDEERLTAKTLYM
Sbjct: 61 LVLVPVYLAGAMGLSVGFVLFGLALYLGWRRVREEKERSLPVAQQLLEDEERLTAKTLYM 120
Query: 436 SQRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPHLQTFTFT 615
SQRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPHLQTFTFT
Sbjct: 121 SQRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPHLQTFTFT 180
Query: 616 RVELGEKPLRILGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKAGVKGMQLHGV 795
RVELGEKPLRILGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKAGVKGMQLHGV
Sbjct: 181 RVELGEKPLRILGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKAGVKGMQLHGV 240
Query: 796 LRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGMTNLLDIPGLSSLSDTMIMDSIAAFL 975
LRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGMTNLLDIPGLSSLSDTMIMDSIAAFL
Sbjct: 241 LRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGMTNLLDIPGLSSLSDTMIMDSIAAFL 300
Query: 976 VLXXRYWCP 1002
VL R P
Sbjct: 301 VLPNRLLVP 309
>ref|XP_003358619.1| PREDICTED: extended synaptotagmin-3 [Sus scrofa].
Length = 885
Score = 245 bits (626), Expect = 3e-65
Identities = 124/257 (48%), Positives = 173/257 (67%), Gaps = 1/257 (0%)
Frame = +1
Query: 235 TSFGRRLLVLVPVYLAGAMGLSVGFVLFGLALYLGWRRVREEKERSLRVAQQLLEDEERL 414
T R L L PVYLAG +GLS+ ++L G L++ WRR R K L A + LE+E +
Sbjct: 37 TFVARVLFYLAPVYLAGYLGLSITWLLLGALLWMWWRRNRRGKLGRLAAAFEFLENERQF 96
Query: 415 TAKTLYMSQRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPH 594
++ L + LPAW+ FPDVE+ EW NKI++Q+WP+L ME E + P +R + H
Sbjct: 97 ISREL--RGQHLPAWIHFPDVERVEWANKIISQIWPYLSMIMENKFREKLEPKIREKSTH 154
Query: 595 LQTFTFTRVELGEKPLRILGVKVHPGQ-RKEQILLDLNISYVGDVQIDVEVKKYFCKAGV 771
L+TFTFT++ G+K R+ GVK H Q + Q++LDL I Y+GD +I VE++K +AGV
Sbjct: 155 LRTFTFTKLYFGQKCPRVNGVKAHTNQCNRRQVVLDLQICYIGDCEISVELQKI--QAGV 212
Query: 772 KGMQLHGVLRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGMTNLLDIPGLSSLSDTMI 951
G+QL G LRVILEPL+ D P VGAV++FF+++P L INWTG+TNLLD PG++ ++D+++
Sbjct: 213 NGIQLQGTLRVILEPLLVDKPFVGAVTVFFLQKPHLQINWTGLTNLLDAPGINEVTDSLL 272
Query: 952 MDSIAAFLVLXXRYWCP 1002
D IAA LVL R P
Sbjct: 273 EDLIAAHLVLPNRVTVP 289
>ref|XP_003134564.2| PREDICTED: WD repeat-containing protein 60-like [Sus scrofa].
Length = 271
Score = 53.5 bits (127), Expect = 2e-07
Identities = 35/85 (41%), Positives = 44/85 (51%)
Frame = +1
Query: 217 EALAVLTSFGRRLLVLVPVYLAGAMGLSVGFVLFGLALYLGWRRVREEKERSLRVAQQLL 396
+ +L R +L+PVY G +GLS +VL L L + RR R K L A LL
Sbjct: 26 DVTGLLAQLARSFALLLPVYALGYLGLSFSWVLLALGLLVWCRRSRGLKATRLCRALALL 85
Query: 397 EDEERLTAKTLYMSQRELPAWVSFP 471
EDEER A L + +LPAW S P
Sbjct: 86 EDEER--AVRLGVRACDLPAWRSLP 108
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,083,001
Number of extensions: 641025
Number of successful extensions: 2011
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2000
Number of HSP's successfully gapped: 4
Length of query: 350
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 250
Effective length of database: 8,854,232
Effective search space: 2213558000
Effective search space used: 2213558000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009456
(1050 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035973.1| extended synaptotagmin-1 [Mus musculus]. 480 e-136
Alignment gi|NP_083007.2| extended synaptotagmin-2 [Mus musculus]. 289 3e-78
Alignment gi|NP_808443.2| extended synaptotagmin-3 [Mus musculus]. 244 1e-64
>ref|NP_035973.1| extended synaptotagmin-1 [Mus musculus].
Length = 1092
Score = 480 bits (1235), Expect = e-136
Identities = 241/262 (91%), Positives = 251/262 (95%)
Frame = +1
Query: 217 EALAVLTSFGRRLLVLVPVYLAGAMGLSVGFVLFGLALYLGWRRVREEKERSLRVAQQLL 396
EALAVLTSFGRRLLVLVPVYLAGA GLSVGFVLFGLALYLGWRRVR+ KERSLR A+QLL
Sbjct: 40 EALAVLTSFGRRLLVLVPVYLAGAAGLSVGFVLFGLALYLGWRRVRDGKERSLRAARQLL 99
Query: 397 EDEERLTAKTLYMSQRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAV 576
+DEER+TA+TLYMS RELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAV
Sbjct: 100 DDEERITAETLYMSHRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAV 159
Query: 577 RGSNPHLQTFTFTRVELGEKPLRILGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYF 756
RG+NPHLQTFTFTRVELGEKPLRI+GVKVHP QRK+QILLDLN+SYVGDVQIDVEVKKYF
Sbjct: 160 RGANPHLQTFTFTRVELGEKPLRIIGVKVHPSQRKDQILLDLNVSYVGDVQIDVEVKKYF 219
Query: 757 CKAGVKGMQLHGVLRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGMTNLLDIPGLSSL 936
CKAGVKGMQLHGVLRVILEPL GDLPIVGAVSMFFI+RPTLDINWTGMTNLLDIPGLSSL
Sbjct: 220 CKAGVKGMQLHGVLRVILEPLTGDLPIVGAVSMFFIKRPTLDINWTGMTNLLDIPGLSSL 279
Query: 937 SDTMIMDSIAAFLVLXXRYWCP 1002
SDTMIMDSIAAFLVL R P
Sbjct: 280 SDTMIMDSIAAFLVLPNRLLVP 301
>ref|NP_083007.2| extended synaptotagmin-2 [Mus musculus].
Length = 845
Score = 289 bits (739), Expect = 3e-78
Identities = 147/270 (54%), Positives = 195/270 (72%), Gaps = 1/270 (0%)
Frame = +1
Query: 229 VLTSFGRRLLVLVPVYLAGAMGLSVGFVLFGLALYLGWRRVREEKERSLRVAQQLLEDEE 408
+L R +L+PVY G +GLS +VL L L RR R K L A LLEDEE
Sbjct: 36 LLGQLARSFALLLPVYALGYLGLSFSWVLLALGLLAWCRRSRGLKASRLCRALALLEDEE 95
Query: 409 RLTAKTLYMSQRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSN 588
+ A L + +LPAWV FPD E+AEWLNK V +WPF+ Q++EKL ET+ PAVRG+N
Sbjct: 96 Q--AVRLGVRACDLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAVRGAN 153
Query: 589 PHLQTFTFTRVELGEKPLRILGVKVHPGQ-RKEQILLDLNISYVGDVQIDVEVKKYFCKA 765
HL TF+FT+V++G++PLR+ GVKV+ K QI+LDL IS+VG+ +ID+E+K+YFC+A
Sbjct: 154 AHLSTFSFTKVDVGQQPLRVNGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRA 213
Query: 766 GVKGMQLHGVLRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGMTNLLDIPGLSSLSDT 945
GVK +Q+HG +RVILEPLIGD+P+VGA+S+FF+R+P L+INWTG+TNLLDIPGL+ LSDT
Sbjct: 214 GVKSIQIHGTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGLTNLLDIPGLNGLSDT 273
Query: 946 MIMDSIAAFLVLXXRYWCPCALTSRRGQLR 1035
+I+D I+ +LVL R P + QLR
Sbjct: 274 IILDIISNYLVLPNRITVPLVSEVQIAQLR 303
>ref|NP_808443.2| extended synaptotagmin-3 [Mus musculus].
Length = 891
Score = 244 bits (622), Expect = 1e-64
Identities = 127/264 (48%), Positives = 177/264 (67%), Gaps = 2/264 (0%)
Frame = +1
Query: 217 EALAVLTSFGRRLLV-LVPVYLAGAMGLSVGFVLFGLALYLGWRRVREEKERSLRVAQQL 393
+ L L SF R+L L PVYLAG +GLSV ++L G L++ WRR R K L A +
Sbjct: 34 QLLPELYSFVARVLFYLAPVYLAGYLGLSVTWLLLGALLWMWWRRNRRGKLGRLEAAFEF 93
Query: 394 LEDEERLTAKTLYMSQRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPA 573
LE E ++ L + LPAW+ FPDVE+ EW NKI+ Q+WP+L ME + E + P
Sbjct: 94 LEHEREFISREL--RGQHLPAWIHFPDVERVEWANKIIIQIWPYLSMIMENKIREKLEPK 151
Query: 574 VRGSNPHLQTFTFTRVELGEKPLRILGVKVHPGQR-KEQILLDLNISYVGDVQIDVEVKK 750
+R + HL+TFTFT++ G+K ++ GVKVH +R + ++ LDL I Y+GD +I VE++K
Sbjct: 152 IREKSIHLRTFTFTKLYFGQKCPKVNGVKVHTDKRNRRKVTLDLQICYIGDCEISVELQK 211
Query: 751 YFCKAGVKGMQLHGVLRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGMTNLLDIPGLS 930
+ GV G+QL G LRVILEPL+ D P +GAV++FF+++P L INWTG+TNLLD+PG++
Sbjct: 212 I--RGGVSGVQLQGTLRVILEPLLVDKPFIGAVTVFFLQKPHLQINWTGLTNLLDMPGIN 269
Query: 931 SLSDTMIMDSIAAFLVLXXRYWCP 1002
LSD+++ D IAA LVL R P
Sbjct: 270 ELSDSLLEDLIAAHLVLPNRVTVP 293
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,255,477
Number of extensions: 836141
Number of successful extensions: 2494
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2487
Number of HSP's successfully gapped: 3
Length of query: 350
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 248
Effective length of database: 12,553,887
Effective search space: 3113363976
Effective search space used: 3113363976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009456
(1050 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171725.1| extended synaptotagmin-1 isoform 1 [Homo sap... 494 e-140
Alignment gi|NP_056107.1| extended synaptotagmin-1 isoform 2 [Homo sapien... 494 e-140
Alignment gi|NP_065779.1| extended synaptotagmin-2 [Homo sapiens]. 292 3e-79
Alignment gi|NP_114119.2| extended synaptotagmin-3 [Homo sapiens]. 234 1e-61
>ref|NP_001171725.1| extended synaptotagmin-1 isoform 1 [Homo sapiens].
Length = 1114
Score = 494 bits (1272), Expect = e-140
Identities = 257/311 (82%), Positives = 266/311 (85%), Gaps = 2/311 (0%)
Frame = +1
Query: 76 MERSPAD--RSSPVXXXXXXXXXXXXXXXXXXXXXQSSGNQXXXXXXXXEALAVLTSFGR 249
MERSP + SP+ SG Q EALAVLTSFGR
Sbjct: 1 MERSPGEGPSPSPMDQPSAPSDPTDQPPAAHAKPDPGSGGQPAGPGAAGEALAVLTSFGR 60
Query: 250 RLLVLVPVYLAGAMGLSVGFVLFGLALYLGWRRVREEKERSLRVAQQLLEDEERLTAKTL 429
RLLVL+PVYLAGA+GLSVGFVLFGLALYLGWRRVR+EKERSLR A+QLL+DEE+LTAKTL
Sbjct: 61 RLLVLIPVYLAGAVGLSVGFVLFGLALYLGWRRVRDEKERSLRAARQLLDDEEQLTAKTL 120
Query: 430 YMSQRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPHLQTFT 609
YMS RELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPHLQTFT
Sbjct: 121 YMSHRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPHLQTFT 180
Query: 610 FTRVELGEKPLRILGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKAGVKGMQLH 789
FTRVELGEKPLRI+GVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKAGVKGMQLH
Sbjct: 181 FTRVELGEKPLRIIGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKAGVKGMQLH 240
Query: 790 GVLRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGMTNLLDIPGLSSLSDTMIMDSIAA 969
GVLRVILEPLIGDLP VGAVSMFFIRRPTLDINWTGMTNLLDIPGLSSLSDTMIMDSIAA
Sbjct: 241 GVLRVILEPLIGDLPFVGAVSMFFIRRPTLDINWTGMTNLLDIPGLSSLSDTMIMDSIAA 300
Query: 970 FLVLXXRYWCP 1002
FLVL R P
Sbjct: 301 FLVLPNRLLVP 311
>ref|NP_056107.1| extended synaptotagmin-1 isoform 2 [Homo sapiens].
Length = 1104
Score = 494 bits (1272), Expect = e-140
Identities = 257/311 (82%), Positives = 266/311 (85%), Gaps = 2/311 (0%)
Frame = +1
Query: 76 MERSPAD--RSSPVXXXXXXXXXXXXXXXXXXXXXQSSGNQXXXXXXXXEALAVLTSFGR 249
MERSP + SP+ SG Q EALAVLTSFGR
Sbjct: 1 MERSPGEGPSPSPMDQPSAPSDPTDQPPAAHAKPDPGSGGQPAGPGAAGEALAVLTSFGR 60
Query: 250 RLLVLVPVYLAGAMGLSVGFVLFGLALYLGWRRVREEKERSLRVAQQLLEDEERLTAKTL 429
RLLVL+PVYLAGA+GLSVGFVLFGLALYLGWRRVR+EKERSLR A+QLL+DEE+LTAKTL
Sbjct: 61 RLLVLIPVYLAGAVGLSVGFVLFGLALYLGWRRVRDEKERSLRAARQLLDDEEQLTAKTL 120
Query: 430 YMSQRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPHLQTFT 609
YMS RELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPHLQTFT
Sbjct: 121 YMSHRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPHLQTFT 180
Query: 610 FTRVELGEKPLRILGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKAGVKGMQLH 789
FTRVELGEKPLRI+GVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKAGVKGMQLH
Sbjct: 181 FTRVELGEKPLRIIGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKAGVKGMQLH 240
Query: 790 GVLRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGMTNLLDIPGLSSLSDTMIMDSIAA 969
GVLRVILEPLIGDLP VGAVSMFFIRRPTLDINWTGMTNLLDIPGLSSLSDTMIMDSIAA
Sbjct: 241 GVLRVILEPLIGDLPFVGAVSMFFIRRPTLDINWTGMTNLLDIPGLSSLSDTMIMDSIAA 300
Query: 970 FLVLXXRYWCP 1002
FLVL R P
Sbjct: 301 FLVLPNRLLVP 311
>ref|NP_065779.1| extended synaptotagmin-2 [Homo sapiens].
Length = 893
Score = 292 bits (748), Expect = 3e-79
Identities = 149/274 (54%), Positives = 197/274 (71%), Gaps = 1/274 (0%)
Frame = +1
Query: 217 EALAVLTSFGRRLLVLVPVYLAGAMGLSVGFVLFGLALYLGWRRVREEKERSLRVAQQLL 396
E +L R +L+PVY G +GLS +VL LAL RR R K L A LL
Sbjct: 80 ELPGLLAQLARSFALLLPVYALGYLGLSFSWVLLALALLAWCRRSRGLKALRLCRALALL 139
Query: 397 EDEERLTAKTLYMSQRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAV 576
EDEER+ L + +LPAWV FPD E+AEWLNK V +WPF+ Q++EKL ET+ PAV
Sbjct: 140 EDEERVVR--LGVRACDLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAV 197
Query: 577 RGSNPHLQTFTFTRVELGEKPLRILGVKVHPGQ-RKEQILLDLNISYVGDVQIDVEVKKY 753
RG+N HL TF+FT+V++G++PLRI GVKV+ K QI+LDL IS+VG+ +ID+E+K+Y
Sbjct: 198 RGANTHLSTFSFTKVDVGQQPLRINGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRY 257
Query: 754 FCKAGVKGMQLHGVLRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGMTNLLDIPGLSS 933
FC+AGVK +Q+HG +RVILEPLIGD+P+VGA+S+FF+R+P L+INWTG+TNLLD+PGL+
Sbjct: 258 FCRAGVKSIQIHGTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGLTNLLDVPGLNG 317
Query: 934 LSDTMIMDSIAAFLVLXXRYWCPCALTSRRGQLR 1035
LSDT+I+D I+ +LVL R P + QLR
Sbjct: 318 LSDTIILDIISNYLVLPNRITVPLVSEVQIAQLR 351
>ref|NP_114119.2| extended synaptotagmin-3 [Homo sapiens].
Length = 886
Score = 234 bits (596), Expect = 1e-61
Identities = 119/253 (47%), Positives = 167/253 (66%), Gaps = 1/253 (0%)
Frame = +1
Query: 247 RRLLVLVPVYLAGAMGLSVGFVLFGLALYLGWRRVREEKERSLRVAQQLLEDEERLTAKT 426
R L L PVYLAG +GLS+ ++L G L++ WRR R K L A + L++E ++
Sbjct: 41 RVLFYLGPVYLAGYLGLSITWLLLGALLWMWWRRNRRGKLGRLAAAFEFLDNEREFISRE 100
Query: 427 LYMSQRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPHLQTF 606
L + LPAW+ FPDVE+ EW NKI++Q WP+L ME E + P +R + HL+TF
Sbjct: 101 L--RGQHLPAWIHFPDVERVEWANKIISQTWPYLSMIMESKFREKLEPKIREKSIHLRTF 158
Query: 607 TFTRVELGEKPLRILGVKVHPGQ-RKEQILLDLNISYVGDVQIDVEVKKYFCKAGVKGMQ 783
TFT++ G+K R+ GVK H + ++ +DL I Y+GD +I VE++K +AGV G+Q
Sbjct: 159 TFTKLYFGQKCPRVNGVKAHTNTCNRRRVTVDLQICYIGDCEISVELQKI--QAGVNGIQ 216
Query: 784 LHGVLRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGMTNLLDIPGLSSLSDTMIMDSI 963
L G LRVILEPL+ D P VGAV++FF+++P L INWTG+TNLLD PG++ +SD+++ D I
Sbjct: 217 LQGTLRVILEPLLVDKPFVGAVTVFFLQKPHLQINWTGLTNLLDAPGINDVSDSLLEDLI 276
Query: 964 AAFLVLXXRYWCP 1002
A LVL R P
Sbjct: 277 ATHLVLPNRVTVP 289
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,156,458
Number of extensions: 1001069
Number of successful extensions: 3188
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3175
Number of HSP's successfully gapped: 4
Length of query: 350
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,901,872
Effective search space: 3680762384
Effective search space used: 3680762384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009456
(1050 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 892 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 892 bits (450), Expect = 0.0
Identities = 460/462 (99%), Gaps = 1/462 (0%)
Strand = Plus / Minus
Query: 1 agaggggagctggtcgca-ggctaggcaacctctagtcggtctctgggccgggcgtgtcc 59
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 22974756 agaggggagctggtcgcaaggctaggcaacctctagtcggtctctgggccgggcgtgtcc 22974697
Query: 60 tcccagaggcggcaccatggagcgctctcctgcagaccgctccagtcccgtggaccaacc 119
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 22974696 tcccagaggcggcaccatggagcgctctcctggagaccgctccagtcccgtggaccaacc 22974637
Query: 120 ctacgctccctccgacccccctgaccagccccccgttgctcccacaaagccggaccagag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22974636 ctacgctccctccgacccccctgaccagccccccgttgctcccacaaagccggaccagag 22974577
Query: 180 ttctgggaaccaacctgctggaccaggcgcggcgggtgaggccctggctgtgctgacttc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22974576 ttctgggaaccaacctgctggaccaggcgcggcgggtgaggccctggctgtgctgacttc 22974517
Query: 240 cttcgggcggcggttgctggtgctggtgccggtgtacctagccggggccatgggactcag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22974516 cttcgggcggcggttgctggtgctggtgccggtgtacctagccggggccatgggactcag 22974457
Query: 300 cgtgggtttcgtgctcttcggcctcgccctctacctgggctggcgccgggtccgcgagga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22974456 cgtgggtttcgtgctcttcggcctcgccctctacctgggctggcgccgggtccgcgagga 22974397
Query: 360 gaaagaacggagccttcgagtagcgcagcagctcctggaggatgaggagcggctcacggc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22974396 gaaagaacggagccttcgagtagcgcagcagctcctggaggatgaggagcggctcacggc 22974337
Query: 420 gaaaactctttacatgagccagcgagagctacctgcctgggt 461
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22974336 gaaaactctttacatgagccagcgagagctacctgcctgggt 22974295
Score = 868 bits (438), Expect = 0.0
Identities = 457/462 (98%), Gaps = 1/462 (0%)
Strand = Plus / Plus
Query: 1 agaggggagctggtcgca-ggctaggcaacctctagtcggtctctgggccgggcgtgtcc 59
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 22986075 agaggggagctggtcgcaaggctaggcaacctctagtcggtctctgggccgggcgtgtcc 22986134
Query: 60 tcccagaggcggcaccatggagcgctctcctgcagaccgctccagtcccgtggaccaacc 119
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 22986135 tcccagaggcggcaccatggagcgctctcctggagaccgctccagtcccgtggaccaacc 22986194
Query: 120 ctacgctccctccgacccccctgaccagccccccgttgctcccacaaagccggaccagag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22986195 ctacgctccctccgacccccctgaccagccccccgttgctcccacaaagccggaccagag 22986254
Query: 180 ttctgggaaccaacctgctggaccaggcgcggcgggtgaggccctggctgtgctgacttc 239
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 22986255 ttctgggaaccaacctgctggaccaagcgcggcgggtgaggccctggctgtgctgacttc 22986314
Query: 240 cttcgggcggcggttgctggtgctggtgccggtgtacctagccggggccatgggactcag 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22986315 cttcgggcggcggatgctggtgctggtgccggtgtacctagccggggccatgggactcag 22986374
Query: 300 cgtgggtttcgtgctcttcggcctcgccctctacctgggctggcgccgggtccgcgagga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22986375 cgtgggtttcgtgctcttcggcctcgccctctacctgggctggcgccgggtccgcgagga 22986434
Query: 360 gaaagaacggagccttcgagtagcgcagcagctcctggaggatgaggagcggctcacggc 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22986435 gaaagaacggagccttccagtagcgcagcagctcctggaggatgaggagcggctcacggc 22986494
Query: 420 gaaaactctttacatgagccagcgagagctacctgcctgggt 461
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22986495 gaaaactctttacatgagccagcgagagctacctgcctgggt 22986536
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 500 agattgtggctcaggtctggcccttcctgggccagtatatggagaagcttttggctgaaa 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22988292 agattgtggctcaggtctggcccttcctgggccagtatatggagaagcttttggctgaaa 22988351
Query: 560 ctgtggccccagctgttcgaggatccaacccccacttgcagacatttacatttacacgag 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22988352 ctgtggccccagctgttcgaggatccaacccccacttgcagacatttacatttacacgag 22988411
Query: 620 tggaactgggtgaaaag 636
|||||||||||||||||
Sbjct: 22988412 tggaactgggtgaaaag 22988428
Score = 184 bits (93), Expect = 7e-44
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 781 cagctacatggtgtcttacgggtgattcttgaaccactcattggggaccttcctattgtg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22988906 cagctacatggtgtcttacgggtgattcttgaaccactcattggggaccttcctattgtg 22988965
Query: 841 ggggctgtgtcgatgttctttatccggcggccg 873
|||||||||||||||||||||||||||||||||
Sbjct: 22988966 ggggctgtgtcgatgttctttatccggcggccg 22988998
Score = 151 bits (76), Expect = 9e-34
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 635 agccactgcgcatccttggagtcaaagttcaccctggtcagagaaaagagcagatcctgc 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22988532 agccactgcgcatccttggagtcaaagttcaccctggtcagagaaaagagcagatcctgc 22988591
Query: 695 tggacttgaacatcag 710
||||||||||||||||
Sbjct: 22988592 tggacttgaacatcag 22988607
Score = 151 bits (76), Expect = 9e-34
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 708 cagctatgtaggtgatgtacagattgatgtggaagtgaagaaatatttctgcaaagcagg 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22988724 cagctatgtaggtgatgtacagattgatgtggaagtgaagaaatatttctgcaaagcagg 22988783
Query: 768 agtcaagggcatgcag 783
||||||||||||||||
Sbjct: 22988784 agtcaagggcatgcag 22988799
Score = 143 bits (72), Expect = 2e-31
Identities = 111/118 (94%), Gaps = 5/118 (4%)
Strand = Plus / Plus
Query: 926 tcagctccctctctgacaccatgatcatggattccatcgctgccttccttgtgttanccn 985
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 22990719 tcagctccctctctgacaccatgatcatggattccatcgctgccttccttgtgttaccca 22990778
Query: 986 accga-tattggtg-cccttgtgccctga-cttcaagacgtgg-ccagttgcgttccc 1039
||||| |||||||| |||||||| ||||| ||||||||||||| ||||||||||||||
Sbjct: 22990779 accgattattggtgccccttgtg-cctgaccttcaagacgtggcccagttgcgttccc 22990835
Score = 113 bits (57), Expect = 2e-22
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 873 gaccctagatattaactggacggggatgaccaacctcctggatatcccaggactcag 929
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22989188 gaccctagatattaactggacggggatgaccaacctcctggatatcccaggactcag 22989244
Score = 85.7 bits (43), Expect = 4e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 459 ggtcagcttcccagatgtggaaaaggccgagtggctaaataag 501
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Sbjct: 22988089 ggtcagcttcccagatgtggaaaaggccgagtggctaaataag 22988131
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,847,046
Number of extensions: 130
Number of successful extensions: 130
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 9
Length of query: 1050
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1029
Effective length of database: 2,808,413,156
Effective search space: 2889857137524
Effective search space used: 2889857137524
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)