Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009460
(941 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193293.1| SLAM family member 6 [Bos taurus]. 303 1e-82
Alignment gi|XP_002685908.1| PREDICTED: CD84 molecule-like [Bos taurus]. 111 8e-25
Alignment gi|XP_588136.4| PREDICTED: CD84 molecule-like [Bos taurus]. 111 8e-25
Alignment gi|NP_001178287.1| SLAM family member 7 [Bos taurus]. 84 1e-16
Alignment gi|XP_002685907.1| PREDICTED: SLAM family member 7-like [Bos ta... 84 1e-16
Alignment gi|NP_001069386.1| T-lymphocyte surface antigen Ly-9 [Bos tauru... 81 2e-15
Alignment gi|XP_002685905.1| PREDICTED: SLAM family member 9 [Bos taurus]. 79 7e-15
Alignment gi|XP_870066.4| PREDICTED: SLAM family member 9 [Bos taurus]. 79 7e-15
Alignment gi|NP_776663.1| CD166 antigen precursor [Bos taurus]. 51 1e-06
Alignment gi|NP_001026929.2| hepatocyte cell adhesion molecule precursor ... 49 8e-06
>ref|NP_001193293.1| SLAM family member 6 [Bos taurus].
Length = 334
Score = 303 bits (777), Expect = 1e-82
Identities = 170/301 (56%), Positives = 203/301 (67%), Gaps = 2/301 (0%)
Frame = +2
Query: 14 LARTLTALRSPAPISTAKSMIWLFQSLTLVF-CLDPGNTVSQTSSTPLIVNGTLGESVTL 190
+AR LT L+SP P STAKSMIWLFQ+L LVF C PGN+ S+ SSTPL+VNG L ESVTL
Sbjct: 1 MARALTILKSPTPFSTAKSMIWLFQALLLVFFCRGPGNSFSEASSTPLVVNGVLRESVTL 60
Query: 191 PLKFPEEEKIMSITWLHDGKSIIFIRPNKAQSPLIHVTDPKQSNRLNVTKSYSLQLSNLT 370
P KFP +E I ITWLH+G S+IFI P +A+ I VTDPK+ ++LNVT+SYSL L+NL+
Sbjct: 61 PSKFPVKENITFITWLHEGSSVIFIWPKEAK---IQVTDPKRKDQLNVTESYSLHLNNLS 117
Query: 371 MADTGSYTAQITT-TSVVFYSYYLRIFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPND 547
MAD G Y AQITT TS + Y L+IFRRL NLQV T S N TC I L CSVE+PND
Sbjct: 118 MADVGHYRAQITTSTSSLNTDYNLQIFRRLSNLQVAHHTTWSENNTCEIQLMCSVENPND 177
Query: 548 NVSFSWQVSGSMLPSEANLTVSWDPKNFRDETYMCIAENPXXXXXXXXXXXXLCKGVINA 727
NVSF WQV+G+ SEANL++SWDPK+ +ETY CIAENP +C+GVIN
Sbjct: 178 NVSFRWQVAGNPYHSEANLSISWDPKSLSEETYTCIAENPVSYLSFSVSDKSVCEGVING 237
Query: 728 KNVHLDTRWIIMVVPLICIVIFACLCVRKKN*QMSFISCSANPRSWCRDREELKYASFLS 907
KN +LD RWII+VV L C F L ++ C A S L+YASF S
Sbjct: 238 KNEYLDIRWIIIVVVLTC---FFQLSTQQ-------TQCHAETVS------NLEYASFSS 281
Query: 908 G 910
G
Sbjct: 282 G 282
>ref|XP_002685908.1| PREDICTED: CD84 molecule-like [Bos taurus].
Length = 351
Score = 111 bits (278), Expect = 8e-25
Identities = 68/212 (32%), Positives = 107/212 (50%), Gaps = 5/212 (2%)
Frame = +2
Query: 98 LVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKSIIFIRP-N 274
L+FCL + + + IVNG LGES T PL +K+ I+W H S+ F++P N
Sbjct: 21 LLFCLQTCLEAAGSDTDIFIVNGILGESATFPLNIQPSQKVTIISW-HSKTSVAFVKPGN 79
Query: 275 KAQSPLIHVTDPKQSNRLNVT-KSYSLQLSNLTMADTGSYTAQI---TTTSVVFYSYYLR 442
+ P++ +T R++V+ ++Y+L+L NL + D+G Y A I T+ SY L+
Sbjct: 80 FGEEPIVTITHQNYHERISVSGQNYNLELRNLRIEDSGIYKADINVETSKVTTTRSYNLQ 139
Query: 443 IFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEANLTVSWDP 622
++RRL ++ S N TC + L CSV+ NV++SW G E N+ +
Sbjct: 140 VYRRLEKPKITQSFVTSVNSTCNVTLMCSVDKEEKNVTYSWSPRG----EEGNVLQIFQT 195
Query: 623 KNFRDETYMCIAENPXXXXXXXXXXXXLCKGV 718
+ ++ETY C A NP LC +
Sbjct: 196 PDNQEETYTCTAWNPVSNNSDSISAQQLCADI 227
>ref|XP_588136.4| PREDICTED: CD84 molecule-like [Bos taurus].
Length = 351
Score = 111 bits (278), Expect = 8e-25
Identities = 68/212 (32%), Positives = 107/212 (50%), Gaps = 5/212 (2%)
Frame = +2
Query: 98 LVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKSIIFIRP-N 274
L+FCL + + + IVNG LGES T PL +K+ I+W H S+ F++P N
Sbjct: 21 LLFCLQTCLEAAGSDTDIFIVNGILGESATFPLNIQPSQKVTIISW-HSKTSVAFVKPGN 79
Query: 275 KAQSPLIHVTDPKQSNRLNVT-KSYSLQLSNLTMADTGSYTAQI---TTTSVVFYSYYLR 442
+ P++ +T R++V+ ++Y+L+L NL + D+G Y A I T+ SY L+
Sbjct: 80 FGEEPIVTITHQNYHERISVSGQNYNLELRNLRIEDSGIYKADINVETSKVTTTRSYNLQ 139
Query: 443 IFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEANLTVSWDP 622
++RRL ++ S N TC + L CSV+ NV++SW G E N+ +
Sbjct: 140 VYRRLEKPKITQSFVTSVNSTCNVTLMCSVDKEEKNVTYSWSPRG----EEGNVLQIFQT 195
Query: 623 KNFRDETYMCIAENPXXXXXXXXXXXXLCKGV 718
+ ++ETY C A NP LC +
Sbjct: 196 PDNQEETYTCTAWNPVSNNSDSISAQQLCADI 227
>ref|NP_001178287.1| SLAM family member 7 [Bos taurus].
Length = 336
Score = 84.3 bits (207), Expect = 1e-16
Identities = 67/241 (27%), Positives = 121/241 (50%), Gaps = 15/241 (6%)
Frame = +2
Query: 140 SSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKSIIFIRPNKA-QSPLIHVTDPKQ 316
S P + G +G SV PL + SI W+ + +++ I+P A + L+ VT +
Sbjct: 21 SGIPKKLVGAIGGSVIFPLNL-SVNLVDSIIWVFNSTTLVTIQPKTAGKKALVIVTQKRN 79
Query: 317 SNRLNVT-KSYSLQLSNLTMADTGSYTAQITTTSV---VFYSYYLRIFRRLGNLQVVTLT 484
R+N + YSL+LS L D+G Y +I ++++ + Y L ++ L +VV
Sbjct: 80 LERVNFPHEGYSLKLSRLKKNDSGIYRVEIHSSTLQDPLTQEYELHVYEYLSKPKVVIGL 139
Query: 485 ERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEAN----LTVSWDPKNFRDETYMC 652
+ ++N TCV +LTCS+E ++V++SW+ S +E++ L +SW + D T++C
Sbjct: 140 QENKNGTCVTNLTCSMEHGEEDVTYSWK-SLDQTTNESHRGSILPISWRWEK-SDMTFIC 197
Query: 653 IAENP-XXXXXXXXXXXXLCKGVINAKNVHLDTRWIIMVVPLIC-----IVIFACLCVRK 814
+A NP LC+G + ++ ++++ L+C ++IF RK
Sbjct: 198 MASNPISSNSSNPIFAQNLCEGAAGGQAPYV-VLYVLLSFFLLCSLALVLIIFIIQRERK 256
Query: 815 K 817
K
Sbjct: 257 K 257
>ref|XP_002685907.1| PREDICTED: SLAM family member 7-like [Bos taurus].
Length = 336
Score = 84.3 bits (207), Expect = 1e-16
Identities = 67/241 (27%), Positives = 121/241 (50%), Gaps = 15/241 (6%)
Frame = +2
Query: 140 SSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKSIIFIRPNKA-QSPLIHVTDPKQ 316
S P + G +G SV PL + SI W+ + +++ I+P A + L+ VT +
Sbjct: 21 SGIPKKLVGAIGGSVIFPLNL-SVNLVDSIIWVFNSTTLVTIQPKTAGKKALVIVTQKRN 79
Query: 317 SNRLNVT-KSYSLQLSNLTMADTGSYTAQITTTSV---VFYSYYLRIFRRLGNLQVVTLT 484
R+N + YSL+LS L D+G Y +I ++++ + Y L ++ L +VV
Sbjct: 80 LERVNFPHEGYSLKLSRLKKNDSGIYRVEIHSSTLQDPLTQEYELHVYEYLSKPKVVIGL 139
Query: 485 ERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEAN----LTVSWDPKNFRDETYMC 652
+ ++N TCV +LTCS+E ++V++SW+ S +E++ L +SW + D T++C
Sbjct: 140 QENKNGTCVTNLTCSMEHGEEDVTYSWK-SLDQTTNESHRGSILPISWRWEK-SDMTFIC 197
Query: 653 IAENP-XXXXXXXXXXXXLCKGVINAKNVHLDTRWIIMVVPLIC-----IVIFACLCVRK 814
+A NP LC+G + ++ ++++ L+C ++IF RK
Sbjct: 198 MASNPISSNSSNPIFAQNLCEGAAGGQAPYV-VLYVLLSFFLLCSLALVLIIFIIQRERK 256
Query: 815 K 817
K
Sbjct: 257 K 257
>ref|NP_001069386.1| T-lymphocyte surface antigen Ly-9 [Bos taurus].
Length = 548
Score = 80.9 bits (198), Expect = 2e-15
Identities = 62/198 (31%), Positives = 92/198 (46%), Gaps = 7/198 (3%)
Frame = +2
Query: 95 TLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKSIIFIRPN 274
TL+ L G S+ S +V +G SV L L + +I ITW +++ P
Sbjct: 34 TLLLFLLLGQGASEKDSASTVVKAIVGGSVILSLNISVDAEIEQITWSGPKDALVLAFP- 92
Query: 275 KAQSPLIHVTDPKQSNRLNVTKSYSLQLSNLTMADTGSYTAQITTTSVVFYS--YYLRIF 448
S I D R+N+ K+ SL ++ LT+ D GSY A+I ++ + L I+
Sbjct: 93 ---SGEILFLDKSYKGRINIPKNNSLSINKLTLKDAGSYKARINQKGSEDFNERFILYIY 149
Query: 449 RRLGNLQV-VTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEA----NLTVS 613
+L QV + S N +C I L CSVE ++ + W S SE+ LT+S
Sbjct: 150 EQLQEPQVTIQSVNVSENASCTITLVCSVEGAGGDIQYKW-TSRDPHASESWGHPTLTIS 208
Query: 614 WDPKNFRDETYMCIAENP 667
W P + D Y C A+NP
Sbjct: 209 WLPCD-ADLPYTCTAKNP 225
>ref|XP_002685905.1| PREDICTED: SLAM family member 9 [Bos taurus].
Length = 336
Score = 78.6 bits (192), Expect = 7e-15
Identities = 65/207 (31%), Positives = 99/207 (47%), Gaps = 10/207 (4%)
Frame = +2
Query: 77 WLFQSLTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDG--K 250
+L+ L L + PG S P++V GTLG SVTLPL+ + +++ SI+W+
Sbjct: 5 FLWSLLLLGLLIGPG-----ASRAPMVVTGTLGGSVTLPLQLQDGQQVESISWVSRSVPG 59
Query: 251 SIIFIRPNKAQSP-LIHVTDPKQSNRLNVT-KSYSLQLSNLTMADTGSYTAQITTTS--- 415
+I + +A P H + + RL+V SLQ+S+L AD GSY A I S
Sbjct: 60 AIATVTLVEAGGPDTFHQEESRYWGRLSVVGPDRSLQISHLNWADAGSYRAHINLRSSRL 119
Query: 416 VVFYSYYLRIFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSG---SML 586
Y L ++ L +V T S N C+I LTC E V++SW G ++
Sbjct: 120 THTREYSLHVYEPLAQPRVTVSTRISGNGHCLIILTCVAESRGGTVTYSWVPLGPQTTVS 179
Query: 587 PSEANLTVSWDPKNFRDETYMCIAENP 667
+ L+VS P + + C+ +NP
Sbjct: 180 HGGSVLSVSLRPGD-SALNFTCMVKNP 205
>ref|XP_870066.4| PREDICTED: SLAM family member 9 [Bos taurus].
Length = 336
Score = 78.6 bits (192), Expect = 7e-15
Identities = 65/207 (31%), Positives = 99/207 (47%), Gaps = 10/207 (4%)
Frame = +2
Query: 77 WLFQSLTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDG--K 250
+L+ L L + PG S P++V GTLG SVTLPL+ + +++ SI+W+
Sbjct: 5 FLWSLLLLGLLIGPG-----ASRAPMVVTGTLGGSVTLPLQLQDGQQVESISWVSRSVPG 59
Query: 251 SIIFIRPNKAQSP-LIHVTDPKQSNRLNVT-KSYSLQLSNLTMADTGSYTAQITTTS--- 415
+I + +A P H + + RL+V SLQ+S+L AD GSY A I S
Sbjct: 60 AIATVTLVEAGGPDTFHQEESRYWGRLSVVGPDRSLQISHLNWADAGSYRAHINLRSSRL 119
Query: 416 VVFYSYYLRIFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSG---SML 586
Y L ++ L +V T S N C+I LTC E V++SW G ++
Sbjct: 120 THTREYSLHVYEPLAQPRVTVSTRISGNGHCLIILTCVAESRGGTVTYSWVPLGPQTTVS 179
Query: 587 PSEANLTVSWDPKNFRDETYMCIAENP 667
+ L+VS P + + C+ +NP
Sbjct: 180 HGGSVLSVSLRPGD-SALNFTCMVKNP 205
>ref|NP_776663.1| CD166 antigen precursor [Bos taurus].
Length = 583
Score = 51.2 bits (121), Expect = 1e-06
Identities = 35/170 (20%), Positives = 77/170 (45%), Gaps = 4/170 (2%)
Frame = +2
Query: 89 SLTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLH---DGKSII 259
S LVFCL TV + VN G+++ +P + + +M W + DG +
Sbjct: 8 SCRLVFCLLISATVLRPGLGWYTVNSAYGDTIIMPCRVDVPQNLMFGKWKYEKPDGSPVF 67
Query: 260 FIRPNKAQSPLIHVTDPKQSNRLNVTKSYSLQLSNLTMADTGSYTAQITTTSVVFYS-YY 436
+ + + + P+ +RLN++++Y+L +SN ++D + + T VF +
Sbjct: 68 IAFRSSTKKSVQYDDVPEYKDRLNLSENYTLSISNAKISDEKRFVCMLVTEDDVFEAPTV 127
Query: 437 LRIFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSML 586
+++F++ ++V+ + C +D + + +W +G +L
Sbjct: 128 VKVFKQPSKPEIVSKAPFLETDKLKKLGECISKDSYPDGNITWYRNGKVL 177
>ref|NP_001026929.2| hepatocyte cell adhesion molecule precursor [Bos taurus].
Length = 418
Score = 48.5 bits (114), Expect = 8e-06
Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 13/203 (6%)
Frame = +2
Query: 98 LVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSIT-W-LHDGKSIIFIRP 271
L+ +P V+ TS LI +GT+G++ L +++ + W L K + ++
Sbjct: 24 LLIQTEPLEGVNITSPVRLI-HGTVGKAALLSVQYSSTSSDKPVVKWQLKRDKPVTVVQ- 81
Query: 272 NKAQSPLIHVTDPKQSNRLNVTKSYSLQLSNLTMADTGSYTAQITTTSVVF---YSYYLR 442
+ +I P +R+ + ++ SL LS+L +AD G+Y +I+ T F + L
Sbjct: 82 -SIGTEVIGTLRPDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLT 140
Query: 443 IFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEANLTVSWDP 622
+ + QV+ + + L CS E+ S++W G L +++ + +S D
Sbjct: 141 VDVPISRPQVLVASTTVLELSEAFTLNCSHEN-GTKPSYTWLKDGKPLLNDSRMLLSPDQ 199
Query: 623 KNFR--------DETYMCIAENP 667
K D+ Y C+ ENP
Sbjct: 200 KVLTITRVLMEDDDLYSCVVENP 222
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,122,076
Number of extensions: 966106
Number of successful extensions: 2539
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2517
Number of HSP's successfully gapped: 10
Length of query: 313
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 211
Effective length of database: 14,306,398
Effective search space: 3018649978
Effective search space used: 3018649978
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009460
(941 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545758.2| PREDICTED: similar to CD84 antigen (leukocyte a... 111 1e-24
Alignment gi|XP_545760.2| PREDICTED: similar to lymphocyte antigen 9 [Can... 85 9e-17
Alignment gi|XP_852458.1| PREDICTED: similar to SLAM family member 7 [Can... 77 3e-14
Alignment gi|XP_545751.2| PREDICTED: similar to immunoglobulin superfamil... 60 4e-09
Alignment gi|XP_852267.1| PREDICTED: similar to hepatocyte cell adhesion ... 49 5e-06
>ref|XP_545758.2| PREDICTED: similar to CD84 antigen (leukocyte antigen) [Canis
familiaris].
Length = 619
Score = 111 bits (277), Expect = 1e-24
Identities = 69/193 (35%), Positives = 104/193 (53%), Gaps = 7/193 (3%)
Frame = +2
Query: 152 LIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKSIIFIRPNKAQS-PLIHVTDPKQSNRL 328
L V GTLGESVT PL E +++++I W + S+ F+ P +++ P + VT ++R+
Sbjct: 161 LTVIGTLGESVTFPLNIQESQQVINIVW-NSETSVAFVTPGDSETAPKVTVTHQNYNDRI 219
Query: 329 NVTK-SYSLQLSNLTMADTGSYTAQITTTSV-----VFYSYYLRIFRRLGNLQVVTLTER 490
NV++ +Y+L++SNL M D+G Y A I T + Y L++FRRLG ++ +
Sbjct: 220 NVSRQNYNLEISNLRMEDSGIYKADINTKILEGMVTTTRRYNLQVFRRLGKPKITQSSMT 279
Query: 491 SRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEANLTVSWDPKNFRDETYMCIAENPX 670
S N TC + LTCSVE +NV++SW S L E N + + + TY C A NP
Sbjct: 280 SINSTCNVTLTCSVEKEEENVTYSW----SPLGEEGNAIRIFQTPDSQRLTYTCTAWNPV 335
Query: 671 XXXXXXXXXXXLC 709
LC
Sbjct: 336 SNSSDSISGLQLC 348
>ref|XP_545760.2| PREDICTED: similar to lymphocyte antigen 9 [Canis familiaris].
Length = 636
Score = 85.1 bits (209), Expect = 9e-17
Identities = 64/245 (26%), Positives = 111/245 (45%), Gaps = 7/245 (2%)
Frame = +2
Query: 104 FCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKSIIFIRPNKAQ 283
FC PG + + ++ G LGESVTLPL F I ++ W+ + I + A
Sbjct: 241 FCTAPGASKGEPMGETVV--GVLGESVTLPLTFSASHHIENVIWMLNTSIISKEQKEMAT 298
Query: 284 S-PLIHVTDPKQSNRLNVTKSYSLQLSNLTMADTGSYTAQITTTS---VVFYSYYLRIFR 451
+ P I DP + N ++ +SL++ + M + G Y+A + + + + L ++
Sbjct: 299 ADPPIKFKDPNK----NSSQDFSLKIDQVKMENAGHYSAYVCSEASRVIKTKHITLLVYG 354
Query: 452 RLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSW-QVSGSMLPSE--ANLTVSWDP 622
RL ++ E + N+ C + LTCSVED NV++ W + + S+ +L V W
Sbjct: 355 RLKKPKITWSLELAENDICRVSLTCSVEDSGHNVTYRWTPLPKGTIESQRGPHLNVFW-T 413
Query: 623 KNFRDETYMCIAENPXXXXXXXXXXXXLCKGVINAKNVHLDTRWIIMVVPLICIVIFACL 802
+ CIA NP +C G + ++ + +M V ++C V C+
Sbjct: 414 SGENHPNFTCIASNPVSSSSQQFLSGNICPGPKRSMKFYI-VIFTVMAVIVLCFVTTWCI 472
Query: 803 CVRKK 817
RK+
Sbjct: 473 WKRKR 477
Score = 78.2 bits (191), Expect = 1e-14
Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 8/205 (3%)
Frame = +2
Query: 77 WLFQSLTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKSI 256
+L+ SL +F L PG S S + V G L SVT L ++++ +TW K++
Sbjct: 31 FLWNSLLFLF-LGPG--ASGKDSAQMEVPGILEGSVTFILNISIDKELEHVTWSRPQKAL 87
Query: 257 IFIRPNKAQSPLIHVTDPKQSNRLNVT-KSYSLQLSNLTMADTGSYTAQITTTSVVFYS- 430
F K I + D +RLN++ SYSL L+NLT+ D G Y AQI + +
Sbjct: 88 AFANAQKD----IIIMDKSYQDRLNISFNSYSLSLNNLTLEDAGPYKAQINYKNAKVTTD 143
Query: 431 --YYLRIFRRLGNLQVVTLT-ERSRNETCVIHLTCSVEDPNDNVSFSW---QVSGSMLPS 592
++L ++ ++ QV+ + +S + +C I L C VE +V +SW + S
Sbjct: 144 KEFFLHLYEQVQEPQVIIKSVNKSDSGSCNITLICFVEKARTSVLYSWTGRDANASESHE 203
Query: 593 EANLTVSWDPKNFRDETYMCIAENP 667
+ LT+ W + D Y C A NP
Sbjct: 204 GSTLTIQWTLCH-PDLPYTCTARNP 227
>ref|XP_852458.1| PREDICTED: similar to SLAM family member 7 [Canis familiaris].
Length = 810
Score = 76.6 bits (187), Expect = 3e-14
Identities = 56/176 (31%), Positives = 84/176 (47%), Gaps = 8/176 (4%)
Frame = +2
Query: 164 GTLGESVTLPLKFPEEEKIMSITWLHDGKSIIFIRPNKAQSPL-IHVTDPKQSNRLNVTK 340
G LG SVT PL P + I SI W + +I I+P + VT R++
Sbjct: 31 GDLGGSVTFPLTLPGIQ-IDSIVWTFNTTPLITIQPRTPDRQANVIVTHSHNKKRVDFLH 89
Query: 341 -SYSLQLSNLTMADTGSYTAQITTTSV---VFYSYYLRIFRRLGNLQVVTLTERSRNETC 508
+YSL+LS L +D+G Y I ++S Y LR++ L +V + N TC
Sbjct: 90 GNYSLKLSKLNKSDSGDYYVVIYSSSFKEPFSQRYGLRVYEHLSKPKVTMGLQNKENGTC 149
Query: 509 VIHLTCSVEDPNDNVSFSWQVSGSMLPSEAN---LTVSWDPKNFRDETYMCIAENP 667
V +LTC V+ ++V++SW+ G N L +SW T++C+A NP
Sbjct: 150 VTNLTCFVDQGGEDVTYSWESLGQAANKSYNGSILPISW-RLGKGGMTFICVARNP 204
>ref|XP_545751.2| PREDICTED: similar to immunoglobulin superfamily, member 9 [Canis
familiaris].
Length = 1474
Score = 59.7 bits (143), Expect = 4e-09
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Frame = +2
Query: 158 VNGTLGESVTLPLKFPEEEKIMSITWLHDGKSIIFIRPNKAQSPLIHVTDPKQSNRLN-V 334
V G L ES++LP++ P +E++ +I W + I + Q I +T+P+ R++ V
Sbjct: 50 VVGVLQESISLPVEIPADEEVENIIWSSSASLAVVIPGREGQPTKIVLTNPRYQRRVSLV 109
Query: 335 TKSYSLQLSNLTMADTGSYTAQI---TTTSVVFYSYYLRIFRRLG 460
YSL +SNL+ D+G Y AQ+ T+ + Y LR++R G
Sbjct: 110 GPDYSLCISNLSWEDSGLYYAQVNLRTSQASSMQRYSLRVYRGRG 154
>ref|XP_852267.1| PREDICTED: similar to hepatocyte cell adhesion molecule [Canis
familiaris].
Length = 418
Score = 49.3 bits (116), Expect = 5e-06
Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 13/203 (6%)
Frame = +2
Query: 98 LVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSIT-W-LHDGKSIIFIRP 271
L+ +P V+ TS LI +GT+G+S L +++ + W L K + ++
Sbjct: 24 LLIQTEPLEGVNITSPVRLI-HGTVGKSALLSVQYSSTSSDKPVVKWQLKRDKPVTVVQ- 81
Query: 272 NKAQSPLIHVTDPKQSNRLNVTKSYSLQLSNLTMADTGSYTAQITTTSVVF---YSYYLR 442
+ +I P +R+ + ++ SL LS+L +AD G+Y +I+ T F + L
Sbjct: 82 -SIGTEVIGTLRPDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLT 140
Query: 443 IFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEANLTVSWDP 622
+ + QV+ + + L CS E+ S++W G L +++ + +S D
Sbjct: 141 VDVPISRPQVLVASTTVLELSEAFTLNCSHEN-GTKPSYTWLKDGKPLLNDSRMLLSPDH 199
Query: 623 KNFR--------DETYMCIAENP 667
K D+ Y C+ ENP
Sbjct: 200 KVLTITRVLMEDDDLYSCVVENP 222
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,651,902
Number of extensions: 992865
Number of successful extensions: 2571
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2557
Number of HSP's successfully gapped: 6
Length of query: 313
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 210
Effective length of database: 15,440,896
Effective search space: 3242588160
Effective search space used: 3242588160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009460
(941 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928602.1| PREDICTED: SLAM family member 6 [Sus scrofa]. 480 e-136
Alignment gi|XP_001928499.3| PREDICTED: SLAM family member 5 [Sus scrofa]. 101 5e-22
Alignment gi|XP_001928448.2| PREDICTED: t-lymphocyte surface antigen Ly-9... 89 3e-18
Alignment gi|XP_001925652.1| PREDICTED: SLAM family member 7-like [Sus sc... 87 1e-17
Alignment gi|XP_001925632.2| PREDICTED: t-lymphocyte surface antigen Ly-9... 85 7e-17
Alignment gi|XP_003125709.1| PREDICTED: t-lymphocyte surface antigen Ly-9... 85 7e-17
Alignment gi|XP_003355146.1| PREDICTED: SLAM family member 5-like isoform... 66 3e-11
Alignment gi|XP_001927628.3| PREDICTED: SLAM family member 9-like [Sus sc... 51 8e-07
Alignment gi|XP_001927671.2| PREDICTED: signaling lymphocytic activation ... 51 1e-06
Alignment gi|XP_003125738.1| PREDICTED: SLAM family member 9-like [Sus sc... 51 1e-06
>ref|XP_001928602.1| PREDICTED: SLAM family member 6 [Sus scrofa].
Length = 321
Score = 480 bits (1235), Expect = e-136
Identities = 244/281 (86%), Positives = 247/281 (87%), Gaps = 1/281 (0%)
Frame = +2
Query: 71 MIWLFQSLTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGK 250
MIWLFQSLTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGK
Sbjct: 1 MIWLFQSLTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGK 60
Query: 251 SIIFIRPNKAQSPLIHVTDPKQSNRLNVTKSYSLQLSNLTMADTGSYTAQITTTSVVFYS 430
SIIFIRPNKAQSPLIHVTDPKQSNRLNVTKSYSLQLSNLTMADTGSYTAQITTTSVVFYS
Sbjct: 61 SIIFIRPNKAQSPLIHVTDPKQSNRLNVTKSYSLQLSNLTMADTGSYTAQITTTSVVFYS 120
Query: 431 YYLRIFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEANLTV 610
YYLRIFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEANLTV
Sbjct: 121 YYLRIFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEANLTV 180
Query: 611 SWDPKNFRDETYMCIAENPXXXXXXXXXXXXLCKGVINAKNVHLDTRWIIMVVPLICIVI 790
SWDPKNFRDETYMCIAENP LCKGVINAKNVHLDTRWIIMVVPLICIVI
Sbjct: 181 SWDPKNFRDETYMCIAENPVSNASSSVSVQSLCKGVINAKNVHLDTRWIIMVVPLICIVI 240
Query: 791 FACLCVRKKN*QMSF-ISCSANPRSWCRDREELKYASFLSG 910
FACLCVR+K F + L+YASF SG
Sbjct: 241 FACLCVRRKKLADVFHFPAQQTQGAGAETVRNLEYASFSSG 281
>ref|XP_001928499.3| PREDICTED: SLAM family member 5 [Sus scrofa].
Length = 358
Score = 101 bits (252), Expect = 5e-22
Identities = 77/238 (32%), Positives = 116/238 (48%), Gaps = 6/238 (2%)
Frame = +2
Query: 98 LVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKSIIFIRPNK 277
L+ CL +++ +VNG LGESVT L + E++ SI+W + S+ + P
Sbjct: 9 LLLCLQTRLGAVGSNTDITMVNGILGESVTFSLSILKSEEVKSISW-NSKTSVAVVVPGN 67
Query: 278 AQSPLIHVTDPKQSNRLNVTK-SYSLQLSNLTMADTGSYTAQITTTSV-----VFYSYYL 439
+ + I VT +RLNV+ +Y+L+L NL M D+G Y A IT S+ + Y L
Sbjct: 68 SGTT-ITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYDL 126
Query: 440 RIFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEANLTVSWD 619
+++RRLG ++ S N TC + LTCSVE NV++SW S L E N+ +
Sbjct: 127 QVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSW----SHLGREGNVLQIFQ 182
Query: 620 PKNFRDETYMCIAENPXXXXXXXXXXXXLCKGVINAKNVHLDTRWIIMVVPLICIVIF 793
+ + TY C A NP LC + V L TR ++ L + +F
Sbjct: 183 TPDNQHLTYTCTAWNPVSNNSDSISAQQLCADIA----VGLQTRHPGLLSGLAVLSVF 236
>ref|XP_001928448.2| PREDICTED: t-lymphocyte surface antigen Ly-9 isoform 2 [Sus
scrofa].
Length = 453
Score = 89.4 bits (220), Expect = 3e-18
Identities = 61/209 (29%), Positives = 101/209 (48%), Gaps = 8/209 (3%)
Frame = +2
Query: 107 CLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKSIIFIRPNKAQS 286
C PG T IV GTLG+S TLPL+ P +++ +TW G + ++P +A
Sbjct: 223 CTGPGILGEDTMGE--IVIGTLGKSATLPLEVPVGQEVEKVTWSSRG-LVATLQPGRAGK 279
Query: 287 P-LIHVTDPKQSNRLNVTK-SYSLQLSNLTMADTGSYTAQITTTSV---VFYSYYLRIFR 451
P L+ T S RL+V + YSLQ+S L + D+G + A IT + + + LR++
Sbjct: 280 PILVDGTQGPYSRRLSVPQHGYSLQISPLRLQDSGPFRAWITLHNPPINITKDFTLRVYE 339
Query: 452 RLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGS---MLPSEANLTVSWDP 622
L + ++ + TC++ L CS++ ++V +SW G + + L +SW
Sbjct: 340 HLQEPSITASSQIMEDGTCLVTLACSLDQAGEDVQYSWDPRGRRTVVSHGGSTLNISW-- 397
Query: 623 KNFRDETYMCIAENPXXXXXXXXXXXXLC 709
++ ++Y C ENP LC
Sbjct: 398 RSGVSDSYRCTVENPISQSSGSIPIRPLC 426
Score = 78.6 bits (192), Expect = 5e-15
Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 7/177 (3%)
Frame = +2
Query: 68 SMIWLFQSLTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDG 247
S++W SL L PG VS+ S P++V GTLG SVTLPL P + + SI W+
Sbjct: 4 SLLWF--SLLLGLLTGPG--VSRVDSAPVVVTGTLGGSVTLPLMLPVGQHVESIFWMCRS 59
Query: 248 --KSIIFIRPNKAQSP-LIHVTDPKQSNRLNVT-KSYSLQLSNLTMADTGSYTAQITTTS 415
+I + +A P + + + + +RL+V SLQ+S+L+ D G Y A I +
Sbjct: 60 VPGTIATVTLEEAGGPDIFYQAETRYWDRLSVVGPGRSLQISHLSWEDAGPYQAHINLRN 119
Query: 416 VVF---YSYYLRIFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSG 577
+ Y L ++ +L +V + S N C++ LTC E V++SW G
Sbjct: 120 SHIPHTWEYSLNVYEQLARPRVTMSSRISGNGHCLVILTCVAESRGGTVTYSWTPLG 176
>ref|XP_001925652.1| PREDICTED: SLAM family member 7-like [Sus scrofa].
Length = 337
Score = 87.4 bits (215), Expect = 1e-17
Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 14/182 (7%)
Frame = +2
Query: 164 GTLGESVTLPLKFPEEEKIMSITWLHDGKSIIFIRPNKA-QSPLIHVTDPKQSNRLNV-T 337
G +G SVT PL I SI W+ + + + I+P A + LI VT + R++
Sbjct: 30 GAVGGSVTFPLNL-SANMIDSIIWVFNTTTFVTIQPKMADKKALIIVTQQRNKERVDFPN 88
Query: 338 KSYSLQLSNLTMADTGSYTAQITTTSV---VFYSYYLRIFRRLGNLQVVTLTERSRNETC 508
+SYSL+LS L D+G+Y +I ++++ + Y LR++ L +V + + N TC
Sbjct: 89 ESYSLKLSKLKKNDSGAYRVEIYSSTLQNPLSQEYELRVYEYLSKPKVTVGLQNNNNGTC 148
Query: 509 VIHLTCSVEDPNDNVSFSW---------QVSGSMLPSEANLTVSWDPKNFRDETYMCIAE 661
V +LTCS E+ ++V++SW GS+LP + RD T++C+A
Sbjct: 149 VTNLTCSTEEGEEDVTYSWISLGQANNESYGGSILPISLR-------REKRDMTFICLAR 201
Query: 662 NP 667
NP
Sbjct: 202 NP 203
>ref|XP_001925632.2| PREDICTED: t-lymphocyte surface antigen Ly-9 isoform 1 [Sus
scrofa].
Length = 645
Score = 84.7 bits (208), Expect = 7e-17
Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 11/219 (5%)
Frame = +2
Query: 44 PAPISTAKS---MIWLFQSLTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEE 214
P+ T KS ++ LF + L+F L + + STP +V G LG SV LPL +
Sbjct: 15 PSSSKTLKSQPHILSLFLWIPLLFLL---MGLGASHSTPTVVRGLLGGSVILPLNISVDM 71
Query: 215 KIMSITWLHDGKSIIFIRPNKAQSPLIHVTDPKQSNRLNV-TKSYSLQLSNLTMADTGSY 391
+I I W ++ + P I + D R+N+ ++ SL ++ LT D GSY
Sbjct: 72 EIEHIAWNDPQNALALVTPRSD----IIIMDRSYQGRINIFAQNNSLSINKLTWKDAGSY 127
Query: 392 TAQITTTS---VVFYSYYLRIFRRLGNLQV-VTLTERSRNETCVIHLTCSVEDPNDNVSF 559
AQI + + ++L I+ +L QV + S N +C L CSVE ++V +
Sbjct: 128 KAQINQKNSEVTINEEFFLHIYEQLQEPQVTMKSVNMSENASCDFTLLCSVEGTGEDVQY 187
Query: 560 SWQVSGSMLPSE---ANLTVSWDPKNFRDETYMCIAENP 667
W + + LT+SW P + D Y+C A+NP
Sbjct: 188 HWTLRDPRAVKSLDGSTLTISWLPCD-PDLPYICTAKNP 225
Score = 83.2 bits (204), Expect = 2e-16
Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 7/211 (3%)
Frame = +2
Query: 104 FCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKSIIFIRPNKAQ 283
FC PG S+ T V G LGES+TL L + + I ++ W+ + SII +A
Sbjct: 239 FCTGPG--ASRGEPTGETVMGILGESITLSLALQDSQHIENVVWMFN-TSIISKEQGEAA 295
Query: 284 SP--LIHVTDPKQSNRLNVTKSYSLQLSNLTMADTGSYTAQITTTSVVFYS--YYLRIFR 451
+ L DP ++ + YSL++S L M D G Y A + + + V + + L ++
Sbjct: 296 TANQLTEFKDPHKNTLWVSNQDYSLKISQLRMEDAGPYHAYVCSNTRVAITKHFNLLVYG 355
Query: 452 RLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSW---QVSGSMLPSEANLTVSWDP 622
RL +V +++ C ++LTCSVED NV++ W Q +L+VSW
Sbjct: 356 RLKKPKVTWSLRHTKDGICRVNLTCSVEDSGHNVTYRWTPLQKGAVRSQGGPHLSVSW-R 414
Query: 623 KNFRDETYMCIAENPXXXXXXXXXXXXLCKG 715
+ + C A NP +C G
Sbjct: 415 SGEKHPNFTCTASNPVSNNSWQFLSGNICPG 445
>ref|XP_003125709.1| PREDICTED: t-lymphocyte surface antigen Ly-9 isoform 2 [Sus
scrofa].
Length = 631
Score = 84.7 bits (208), Expect = 7e-17
Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 11/219 (5%)
Frame = +2
Query: 44 PAPISTAKS---MIWLFQSLTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEE 214
P+ T KS ++ LF + L+F L + + STP +V G LG SV LPL +
Sbjct: 15 PSSSKTLKSQPHILSLFLWIPLLFLL---MGLGASHSTPTVVRGLLGGSVILPLNISVDM 71
Query: 215 KIMSITWLHDGKSIIFIRPNKAQSPLIHVTDPKQSNRLNV-TKSYSLQLSNLTMADTGSY 391
+I I W ++ + P I + D R+N+ ++ SL ++ LT D GSY
Sbjct: 72 EIEHIAWNDPQNALALVTPRSD----IIIMDRSYQGRINIFAQNNSLSINKLTWKDAGSY 127
Query: 392 TAQITTTS---VVFYSYYLRIFRRLGNLQV-VTLTERSRNETCVIHLTCSVEDPNDNVSF 559
AQI + + ++L I+ +L QV + S N +C L CSVE ++V +
Sbjct: 128 KAQINQKNSEVTINEEFFLHIYEQLQEPQVTMKSVNMSENASCDFTLLCSVEGTGEDVQY 187
Query: 560 SWQVSGSMLPSE---ANLTVSWDPKNFRDETYMCIAENP 667
W + + LT+SW P + D Y+C A+NP
Sbjct: 188 HWTLRDPRAVKSLDGSTLTISWLPCD-PDLPYICTAKNP 225
Score = 83.2 bits (204), Expect = 2e-16
Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 7/211 (3%)
Frame = +2
Query: 104 FCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKSIIFIRPNKAQ 283
FC PG S+ T V G LGES+TL L + + I ++ W+ + SII +A
Sbjct: 239 FCTGPG--ASRGEPTGETVMGILGESITLSLALQDSQHIENVVWMFN-TSIISKEQGEAA 295
Query: 284 SP--LIHVTDPKQSNRLNVTKSYSLQLSNLTMADTGSYTAQITTTSVVFYS--YYLRIFR 451
+ L DP ++ + YSL++S L M D G Y A + + + V + + L ++
Sbjct: 296 TANQLTEFKDPHKNTLWVSNQDYSLKISQLRMEDAGPYHAYVCSNTRVAITKHFNLLVYG 355
Query: 452 RLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSW---QVSGSMLPSEANLTVSWDP 622
RL +V +++ C ++LTCSVED NV++ W Q +L+VSW
Sbjct: 356 RLKKPKVTWSLRHTKDGICRVNLTCSVEDSGHNVTYRWTPLQKGAVRSQGGPHLSVSW-R 414
Query: 623 KNFRDETYMCIAENPXXXXXXXXXXXXLCKG 715
+ + C A NP +C G
Sbjct: 415 SGEKHPNFTCTASNPVSNNSWQFLSGNICPG 445
>ref|XP_003355146.1| PREDICTED: SLAM family member 5-like isoform 2 [Sus scrofa].
Length = 240
Score = 65.9 bits (159), Expect = 3e-11
Identities = 54/174 (31%), Positives = 78/174 (44%), Gaps = 12/174 (6%)
Frame = +2
Query: 371 MADTGSYTAQITTTSV-----VFYSYYLRIFRRLGNLQVVTLTERSRNETCVIHLTCSVE 535
M D+G Y A IT S+ + Y L+++RRLG ++ S N TC + LTCSVE
Sbjct: 1 MEDSGIYKADITVKSLEKVTTITKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVE 60
Query: 536 DPNDNVSFSWQVSGSMLPSEANLTVSWDPKNFRDETYMCIAENPXXXXXXXXXXXXLCKG 715
NV++SW S L E N+ + + + TY C A NP LC
Sbjct: 61 KEEKNVTYSW----SHLGREGNVLQIFQTPDNQHLTYTCTAWNPVSNNSDSISAQQLCAD 116
Query: 716 VINAKNVHLDTR------WIIMVVPLICIVIFACLCVRKKN*QMSFI-SCSANP 856
+ V L TR + ++ I I+ LC+ K Q S++ + S NP
Sbjct: 117 IA----VGLQTRHPGLLSGLAVLSVFIIIIPSVILCLMYKRGQGSYLKTFSKNP 166
>ref|XP_001927628.3| PREDICTED: SLAM family member 9-like [Sus scrofa].
Length = 277
Score = 51.2 bits (121), Expect = 8e-07
Identities = 39/172 (22%), Positives = 78/172 (45%), Gaps = 6/172 (3%)
Frame = +2
Query: 134 QTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKS----IIFIRPNKAQSPLIHV 301
Q S P + G G SV PL ++ ++ +TW S ++ +RP KA P+
Sbjct: 47 QDSGAPDPLQGIRGGSVLFPLPKKQDAELEEVTWGFGPGSEYRVLLRVRPGKA--PIWVS 104
Query: 302 TDPKQSNRLNVTKSYSLQLSNLTMADTGSYTAQITTTSVVFYS--YYLRIFRRLGNLQVV 475
R++V SL++ NLT D+G Y A+ + T V ++ ++L ++ + Q++
Sbjct: 105 LQDGYQQRVHVPNMTSLKIENLTPEDSGLYRARGSFTGGVDFTQVFHLTVYEPVPIPQIL 164
Query: 476 TLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEANLTVSWDPKNF 631
+ C + + C + +++ +W+ G E +T+ P ++
Sbjct: 165 VHSPSITQGWCNVTIECRISWGTEDLKVTWEGKGLPRQLEERVTLGPAPNSW 216
>ref|XP_001927671.2| PREDICTED: signaling lymphocytic activation molecule-like [Sus
scrofa].
Length = 322
Score = 50.8 bits (120), Expect = 1e-06
Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 20/216 (9%)
Frame = +2
Query: 80 LFQ-SLTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKS- 253
+FQ SL L TVS SS+ + T+GESV L L + I I W D +
Sbjct: 15 MFQISLILAIPSPASQTVSDPSSS-CTLKRTVGESVQLQLNSSLDPNIREIEWNLDSEDD 73
Query: 254 -----IIFIRPNKAQSPLIHVTDPKQSNRLNVTKSYSLQLSNLTMADTGSYTAQITTTSV 418
++ PN +P + + + R ++T+ L + NLTM +G YTA+I S
Sbjct: 74 ERTQILVSWNPNTL-NPDWYDLEEEFKCRFSLTEMAFLSIRNLTMEMSGLYTARIKFRSG 132
Query: 419 VFY--SYYLRIFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSG----- 577
++ L ++ + + Q+ + + + C I L C N+ +WQ G
Sbjct: 133 KSQEETFRLCLYEPIPHPQIQIHSLSNTSGWCHISLECGTPGNTGNLMVTWQSQGLPKEL 192
Query: 578 ------SMLPSEANLTVSWDPKNFRDETYMCIAENP 667
PS NL++S +F + C+ NP
Sbjct: 193 EQSGTLGPSPSSRNLSLSLPLSHF-NSRLTCVVSNP 227
>ref|XP_003125738.1| PREDICTED: SLAM family member 9-like [Sus scrofa].
Length = 353
Score = 50.8 bits (120), Expect = 1e-06
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 4/167 (2%)
Frame = +2
Query: 134 QTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKSI--IFIRPNKAQSPLIHVTD 307
Q S P + G G SV PL ++ ++ +TW S + +R ++P
Sbjct: 38 QDSGAPDPLQGIRGGSVLFPLPKKQDAELEEVTWGFGPGSEYRVLLRVRPGEAPTWVSLQ 97
Query: 308 PKQSNRLNVTKSYSLQLSNLTMADTGSYTAQITTTSVVFYS--YYLRIFRRLGNLQVVTL 481
+ R++V SL++ NLT D+G Y A+++ T V + ++L ++ + Q++
Sbjct: 98 DRYQQRVHVPNMTSLKIENLTPEDSGLYRARVSFTGGVELTKVFHLTVYEPVTIPQILVH 157
Query: 482 TERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEANLTVSWDP 622
+ C + + C +++ +W+ G LP E V+ P
Sbjct: 158 SSSITPGWCNVTMECRTSGDAEDLKVTWE--GKGLPRELEERVTSGP 202
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,214,872
Number of extensions: 616653
Number of successful extensions: 1601
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 1571
Number of HSP's successfully gapped: 14
Length of query: 313
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 214
Effective length of database: 8,879,129
Effective search space: 1900133606
Effective search space used: 1900133606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009460
(941 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_109635.1| SLAM family member 6 [Mus musculus]. 203 1e-52
Alignment gi|NP_083888.3| SLAM family member 9 precursor [Mus musculus]. 101 7e-22
Alignment gi|NP_038517.1| SLAM family member 5 precursor [Mus musculus]. 96 4e-20
Alignment gi|NP_653122.2| SLAM family member 7 precursor [Mus musculus]. 79 5e-15
Alignment gi|NP_032560.2| T-lymphocyte surface antigen Ly-9 precursor [Mu... 76 3e-14
Alignment gi|NP_780398.2| hepatocyte cell adhesion molecule precursor [Mu... 49 7e-06
>ref|NP_109635.1| SLAM family member 6 [Mus musculus].
Length = 331
Score = 203 bits (517), Expect = 1e-52
Identities = 113/262 (43%), Positives = 156/262 (59%), Gaps = 6/262 (2%)
Frame = +2
Query: 38 RSPAPISTAKSMIWLFQSLTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEK 217
R+PAP S + M+WLF LVFCL G+ VSQ+SS P ++NG LGES LPLK P +
Sbjct: 5 RAPAPDSACQRMVWLFP---LVFCLGSGSEVSQSSSDPQLMNGVLGESAVLPLKLPAGKI 61
Query: 218 IMSITWLHDGKS----IIFIRPNKAQSPLIHVTDPKQSNRLNVTKSYSLQLSNLTMADTG 385
I W ++ ++ + I + +SP I TD K+ RLN+T+SYSLQ+SNLTMADTG
Sbjct: 62 ANIIIWNYEWEASQVTALVINLSNPESPQIMNTDVKK--RLNITQSYSLQISNLTMADTG 119
Query: 386 SYTAQITT--TSVVFYSYYLRIFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSF 559
SYTAQITT + V+ + Y LR+F RLGNL+ T N TC IHL C +++ + VS
Sbjct: 120 SYTAQITTKDSEVITFKYILRVFERLGNLETTNYTLLLENGTCQIHLACVLKNQSQTVSV 179
Query: 560 SWQVSGSMLPSEANLTVSWDPKNFRDETYMCIAENPXXXXXXXXXXXXLCKGVINAKNVH 739
WQ +G++ N+T+ WDP+N D+TY+C A+N LCKGV+ N
Sbjct: 180 EWQATGNISLGGPNVTIFWDPRNSGDQTYVCRAKNAVSNLSVSVSTQSLCKGVLT--NPP 237
Query: 740 LDTRWIIMVVPLICIVIFACLC 805
+ W + + +I VI +C
Sbjct: 238 WNAVWFMTTISIISAVILIFVC 259
>ref|NP_083888.3| SLAM family member 9 precursor [Mus musculus].
Length = 285
Score = 101 bits (252), Expect = 7e-22
Identities = 66/198 (33%), Positives = 98/198 (49%), Gaps = 7/198 (3%)
Frame = +2
Query: 95 TLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKSIIFIRPN 274
+L+ L S P V G L ES+ L L+ P E+I I WL I
Sbjct: 7 SLLLLLQEAKGFSGDDEDPEEVVGVLQESINLSLEIPSNEEIKHIDWLFQNNIAIVKPGK 66
Query: 275 KAQSPLIHVTDPKQSNRLNVTK-SYSLQLSNLTMADTGSYTAQI---TTTSVVFYSYYLR 442
K Q +I DP+ R+++++ SYSL +SNLT D+G Y AQ+ T+ S + SY+LR
Sbjct: 67 KGQPAVIMAVDPRYRGRVSISESSYSLHISNLTWEDSGLYNAQVNLKTSESHITKSYHLR 126
Query: 443 IFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSW---QVSGSMLPSEANLTVS 613
++RRL + + S C I LTCS+E +V++ W Q S + + L+ S
Sbjct: 127 VYRRLSKPHITVNSNISEEGVCNISLTCSIERAGMDVTYIWLSSQDSTNTSHEGSVLSTS 186
Query: 614 WDPKNFRDETYMCIAENP 667
W P + + +Y C NP
Sbjct: 187 WRPGD-KAPSYTCRVSNP 203
>ref|NP_038517.1| SLAM family member 5 precursor [Mus musculus].
Length = 329
Score = 95.9 bits (237), Expect = 4e-20
Identities = 66/207 (31%), Positives = 102/207 (49%), Gaps = 5/207 (2%)
Frame = +2
Query: 62 AKSMIWLFQSLTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLH 241
A+ +W++ CL + + + P+++NG LGESVT L E +KI +I W
Sbjct: 2 AQRHLWIW-----FLCLQTWSEAAGKDADPVVMNGILGESVTFLLNIQEPKKIDNIAWTS 56
Query: 242 DGKSIIFIRP--NKAQSPLIHVTDPKQSNRLNVT-KSYSLQLSNLTMADTGSYTAQITTT 412
S+ FI+P NKA+ + +T R+ + + Y L + +L M D G+Y A I
Sbjct: 57 QS-SVAFIKPGVNKAE---VTITQGTYKGRIEIIDQKYDLVIRDLRMEDAGTYKADINEE 112
Query: 413 S--VVFYSYYLRIFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSML 586
+ + YYL I+RRL ++ S N TC I LTCSVE +V++SW G
Sbjct: 113 NEETITKIYYLHIYRRLKTPKITQSLISSLNNTCNITLTCSVEKEEKDVTYSWSPFG--- 169
Query: 587 PSEANLTVSWDPKNFRDETYMCIAENP 667
++N+ + TY C A+NP
Sbjct: 170 -EKSNVLQIVHSPMDQKLTYTCTAQNP 195
>ref|NP_653122.2| SLAM family member 7 precursor [Mus musculus].
Length = 333
Score = 79.0 bits (193), Expect = 5e-15
Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Frame = +2
Query: 125 TVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKSIIFIRPNKAQSPLIHVT 304
TV+ S T V G L SVT L E K+ + W + + ++ + S
Sbjct: 18 TVTAASGTLKKVAGALDGSVTFTLNITEI-KVDYVVWTFNTFFLAMVKKDGVTS------ 70
Query: 305 DPKQSNRLNVTKS---YSLQLSNLTMADTGSYTAQITTTSV---VFYSYYLRIFRRLGNL 466
+ SN+ + YS++LS L D+G+Y A+I +TS + Y L +++ L
Sbjct: 71 --QSSNKERIVFPDGLYSMKLSQLKKNDSGAYRAEIYSTSSQASLIQEYVLHVYKHLSRP 128
Query: 467 QVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSG---SMLPSEANLTVSWDPKNFRD 637
+V + ++N TCVI+LTCS + +NV++SW+ G + A L+++W +D
Sbjct: 129 KVTIDRQSNKNGTCVINLTCSTDQDGENVTYSWKAVGQGDNQFHDGATLSIAW-RSGEKD 187
Query: 638 ETYMCIAENP 667
+ C+A NP
Sbjct: 188 QALTCMARNP 197
>ref|NP_032560.2| T-lymphocyte surface antigen Ly-9 precursor [Mus musculus].
Length = 654
Score = 76.3 bits (186), Expect = 3e-14
Identities = 65/265 (24%), Positives = 110/265 (41%), Gaps = 25/265 (9%)
Frame = +2
Query: 122 NTVSQTSSTPL------------------IVNGTLGESVTLPLKFPEEEKIMSITWLHDG 247
N VSQ SS P+ V G LGE VTLPL+F ++ W+ +
Sbjct: 226 NPVSQNSSQPVRIWQFCTGASRRKTAAGKTVVGILGEPVTLPLEFRATRATKNVVWVFNT 285
Query: 248 KSIIFIRPNKAQSPLIHVTDPKQSNRLNVT-KSYSLQLSNLTMADTGSYTAQITTTSVVF 424
I R A + + R+ + + SL++S L M D G Y A + + +
Sbjct: 286 SVISQERRGAATADSRRKPKGSEERRVRTSDQDQSLKISQLKMEDAGPYHAYVCSEASRD 345
Query: 425 YS---YYLRIFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSW---QVSGSML 586
S + L +++RL V N C + LTCSV+ +NV+++W Q M
Sbjct: 346 PSVRHFTLLVYKRLEKPSVTKSPVHMMNGICEVVLTCSVDGGGNNVTYTWMPLQNKAVMS 405
Query: 587 PSEANLTVSWDPKNFRDETYMCIAENPXXXXXXXXXXXXLCKGVINAKNVHLDTRWIIMV 766
+++L VSW+ + C A NP +C G K W++++
Sbjct: 406 QGKSHLNVSWESGEHL-PNFTCTAHNPVSNSSSQFSSGTICSGPERNKRF-----WLLLL 459
Query: 767 VPLICIVIFACLCVRKKN*QMSFIS 841
+ L+ +++ + +K Q S ++
Sbjct: 460 LVLLLLMLIGGYFILRKKKQCSSLA 484
Score = 74.7 bits (182), Expect = 1e-13
Identities = 64/203 (31%), Positives = 97/203 (47%), Gaps = 11/203 (5%)
Frame = +2
Query: 92 LTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKSIIFIRP 271
+ L+F L G S + P +++G LG SVT L ++ +I I W K++ +
Sbjct: 34 IPLLFLL-MGLGASGKETPPTVISGMLGGSVTFSLNISKDAEIEHIIWNCPPKALALVFY 92
Query: 272 NKAQSPLIHVTDPKQSNRLNVTKS-YSLQLSNLTMADTGSYTAQITTTSVVFYS---YYL 439
K I + D + RL V++ YSL +SNLT +D+GSY AQI +V+ + + L
Sbjct: 93 KKD----ITILDKGYNGRLKVSEDGYSLYMSNLTKSDSGSYHAQINQKNVILTTNKEFTL 148
Query: 440 RIFRRLGNLQ-VVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSML---PSEANLT 607
I+ +L Q +V S ++C L C+V+ D+V +SW + L L
Sbjct: 149 HIYEKLQKPQIIVESVTPSDTDSCTFTLICTVKGTKDSVQYSWTREDTHLNTYDGSHTLR 208
Query: 608 VS---WDPKNFRDETYMCIAENP 667
VS DP D Y C A NP
Sbjct: 209 VSQSVCDP----DLPYTCKAWNP 227
>ref|NP_780398.2| hepatocyte cell adhesion molecule precursor [Mus musculus].
Length = 418
Score = 48.5 bits (114), Expect = 7e-06
Identities = 43/184 (23%), Positives = 83/184 (45%), Gaps = 13/184 (7%)
Frame = +2
Query: 155 IVNGTLGESVTLPLKFPEEEKIMSIT-W-LHDGKSIIFIRPNKAQSPLIHVTDPKQSNRL 328
+++GT+G+S L +++ + W L K + ++ + +I P +R+
Sbjct: 42 LIHGTVGKSALLSVQYSSTSSDKPVVKWQLKRDKPVTVVQ--SIGTEVIGTLRPDYRDRI 99
Query: 329 NVTKSYSLQLSNLTMADTGSYTAQITTTSVVF---YSYYLRIFRRLGNLQVVTLTERSRN 499
+ ++ SL LS+L +AD G+Y +I+ T F + L + + QV+ +
Sbjct: 100 RLFENGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTVDVPISRPQVLVASTTVLE 159
Query: 500 ETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEANLTVSWDPKNFR--------DETYMCI 655
+ L CS E+ S++W G L +++ + +S D K D+ Y C+
Sbjct: 160 LSEAFTLNCSHEN-GTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSCV 218
Query: 656 AENP 667
ENP
Sbjct: 219 VENP 222
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,596,076
Number of extensions: 839685
Number of successful extensions: 2226
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2207
Number of HSP's successfully gapped: 7
Length of query: 313
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 212
Effective length of database: 12,583,923
Effective search space: 2667791676
Effective search space used: 2667791676
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009460
(941 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171643.1| SLAM family member 6 isoform 1 precursor [Ho... 256 2e-68
Alignment gi|NP_443163.1| SLAM family member 6 isoform 2 precursor [Homo ... 256 2e-68
Alignment gi|NP_001171644.1| SLAM family member 6 isoform 3 precursor [Ho... 172 5e-43
Alignment gi|NP_001171810.1| SLAM family member 5 isoform 3 [Homo sapiens]. 103 3e-22
Alignment gi|NP_001171808.1| SLAM family member 5 isoform 1 [Homo sapiens]. 103 3e-22
Alignment gi|NP_003865.1| SLAM family member 5 isoform 2 [Homo sapiens]. 103 3e-22
Alignment gi|NP_001171645.1| SLAM family member 6 isoform 4 precursor [Ho... 99 6e-21
Alignment gi|NP_002339.2| T-lymphocyte surface antigen Ly-9 isoform a [Ho... 95 8e-20
Alignment gi|NP_254273.2| SLAM family member 9 isoform 1 [Homo sapiens]. 80 3e-15
Alignment gi|NP_067004.3| SLAM family member 7 [Homo sapiens]. 76 4e-14
>ref|NP_001171643.1| SLAM family member 6 isoform 1 precursor [Homo sapiens].
Length = 332
Score = 256 bits (654), Expect = 2e-68
Identities = 139/259 (53%), Positives = 173/259 (66%), Gaps = 5/259 (1%)
Frame = +2
Query: 71 MIWLFQSLTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGK 250
M+WLFQSL VFC PGN VSQ+S TPL+VNG LGESVTLPL+FP EK+ ITWL +
Sbjct: 1 MLWLFQSLLFVFCFGPGNVVSQSSLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNET 60
Query: 251 SIIFIRPNKAQSPLIHVTDPKQSNRLNVTKSYSLQLSNLTMADTGSYTAQITT-TSVVFY 427
S+ FI P++ +SP IHVT+PKQ RLN T+SYSLQLSNL M DTGSY AQI+T TS
Sbjct: 61 SLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLS 120
Query: 428 SYYLRIFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEANLT 607
SY LRI R+L N+QV ++ +N TC +HLTCSVED +DNVSF W+ G+ L S+ NLT
Sbjct: 121 SYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLT 180
Query: 608 VSWDPKNFRDETYMCIAENPXXXXXXXXXXXXLCKGVINAKNVHLDTRWIIMVVPLICIV 787
VSWDP+ ++ Y CIAEN LC+ V K + DT+ I+ +V ICIV
Sbjct: 181 VSWDPRISSEQDYTCIAENAVSNLSFSVSAQKLCEDV---KIQYTDTKMILFMVSGICIV 237
Query: 788 ----IFACLCVRKKN*QMS 832
I L +RK+ +S
Sbjct: 238 FGFIILLLLVLRKRRDSLS 256
>ref|NP_443163.1| SLAM family member 6 isoform 2 precursor [Homo sapiens].
Length = 331
Score = 256 bits (654), Expect = 2e-68
Identities = 139/259 (53%), Positives = 173/259 (66%), Gaps = 5/259 (1%)
Frame = +2
Query: 71 MIWLFQSLTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGK 250
M+WLFQSL VFC PGN VSQ+S TPL+VNG LGESVTLPL+FP EK+ ITWL +
Sbjct: 1 MLWLFQSLLFVFCFGPGNVVSQSSLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNET 60
Query: 251 SIIFIRPNKAQSPLIHVTDPKQSNRLNVTKSYSLQLSNLTMADTGSYTAQITT-TSVVFY 427
S+ FI P++ +SP IHVT+PKQ RLN T+SYSLQLSNL M DTGSY AQI+T TS
Sbjct: 61 SLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLS 120
Query: 428 SYYLRIFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEANLT 607
SY LRI R+L N+QV ++ +N TC +HLTCSVED +DNVSF W+ G+ L S+ NLT
Sbjct: 121 SYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLT 180
Query: 608 VSWDPKNFRDETYMCIAENPXXXXXXXXXXXXLCKGVINAKNVHLDTRWIIMVVPLICIV 787
VSWDP+ ++ Y CIAEN LC+ V K + DT+ I+ +V ICIV
Sbjct: 181 VSWDPRISSEQDYTCIAENAVSNLSFSVSAQKLCEDV---KIQYTDTKMILFMVSGICIV 237
Query: 788 ----IFACLCVRKKN*QMS 832
I L +RK+ +S
Sbjct: 238 FGFIILLLLVLRKRRDSLS 256
>ref|NP_001171644.1| SLAM family member 6 isoform 3 precursor [Homo sapiens].
Length = 282
Score = 172 bits (435), Expect = 5e-43
Identities = 107/259 (41%), Positives = 135/259 (52%), Gaps = 5/259 (1%)
Frame = +2
Query: 71 MIWLFQSLTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGK 250
M+WLFQSL VFC P
Sbjct: 1 MLWLFQSLLFVFCFGPV------------------------------------------- 17
Query: 251 SIIFIRPNKAQSPLIHVTDPKQSNRLNVTKSYSLQLSNLTMADTGSYTAQITT-TSVVFY 427
P++ +SP IHVT+PKQ RLN T+SYSLQLSNL M DTGSY AQI+T TS
Sbjct: 18 ------PHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLS 71
Query: 428 SYYLRIFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEANLT 607
SY LRI R+L N+QV ++ +N TC +HLTCSVED +DNVSF W+ G+ L S+ NLT
Sbjct: 72 SYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLT 131
Query: 608 VSWDPKNFRDETYMCIAENPXXXXXXXXXXXXLCKGVINAKNVHLDTRWIIMVVPLICIV 787
VSWDP+ ++ Y CIAEN LC+ V K + DT+ I+ +V ICIV
Sbjct: 132 VSWDPRISSEQDYTCIAENAVSNLSFSVSAQKLCEDV---KIQYTDTKMILFMVSGICIV 188
Query: 788 ----IFACLCVRKKN*QMS 832
I L +RK+ +S
Sbjct: 189 FGFIILLLLVLRKRRDSLS 207
>ref|NP_001171810.1| SLAM family member 5 isoform 3 [Homo sapiens].
Length = 272
Score = 103 bits (256), Expect = 3e-22
Identities = 69/231 (29%), Positives = 108/231 (46%), Gaps = 5/231 (2%)
Frame = +2
Query: 62 AKSMIWLFQSLTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLH 241
A+ +W+ L+ CL + S VNG LGESVT P+ E ++ I W
Sbjct: 2 AQHHLWI-----LLLCLQTWPEAAGKDSEIFTVNGILGESVTFPVNIQEPRQVKIIAWTS 56
Query: 242 DGKSIIFIRPNKAQS-PLIHVTDPKQSNRLNVT-KSYSLQLSNLTMADTGSYTAQITTTS 415
S+ ++ P +++ P++ VT R++ +Y+L +S+L M D G Y A I T +
Sbjct: 57 K-TSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKADINTQA 115
Query: 416 VVFYS---YYLRIFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSML 586
+ + Y L+I+RRLG ++ S N TC + LTCSVE NV+++W S L
Sbjct: 116 DPYTTTKRYNLQIYRRLGKPKITQSLMASVNSTCNVTLTCSVEKEEKNVTYNW----SPL 171
Query: 587 PSEANLTVSWDPKNFRDETYMCIAENPXXXXXXXXXXXXLCKGVINAKNVH 739
E N+ + ++ TY C A+NP LC + H
Sbjct: 172 GEEGNVLQIFQTPEDQELTYTCTAQNPVSNNSDSISARQLCADIAMGFRTH 222
>ref|NP_001171808.1| SLAM family member 5 isoform 1 [Homo sapiens].
Length = 345
Score = 103 bits (256), Expect = 3e-22
Identities = 69/231 (29%), Positives = 108/231 (46%), Gaps = 5/231 (2%)
Frame = +2
Query: 62 AKSMIWLFQSLTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLH 241
A+ +W+ L+ CL + S VNG LGESVT P+ E ++ I W
Sbjct: 2 AQHHLWI-----LLLCLQTWPEAAGKDSEIFTVNGILGESVTFPVNIQEPRQVKIIAWTS 56
Query: 242 DGKSIIFIRPNKAQS-PLIHVTDPKQSNRLNVT-KSYSLQLSNLTMADTGSYTAQITTTS 415
S+ ++ P +++ P++ VT R++ +Y+L +S+L M D G Y A I T +
Sbjct: 57 K-TSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKADINTQA 115
Query: 416 VVFYS---YYLRIFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSML 586
+ + Y L+I+RRLG ++ S N TC + LTCSVE NV+++W S L
Sbjct: 116 DPYTTTKRYNLQIYRRLGKPKITQSLMASVNSTCNVTLTCSVEKEEKNVTYNW----SPL 171
Query: 587 PSEANLTVSWDPKNFRDETYMCIAENPXXXXXXXXXXXXLCKGVINAKNVH 739
E N+ + ++ TY C A+NP LC + H
Sbjct: 172 GEEGNVLQIFQTPEDQELTYTCTAQNPVSNNSDSISARQLCADIAMGFRTH 222
>ref|NP_003865.1| SLAM family member 5 isoform 2 [Homo sapiens].
Length = 328
Score = 103 bits (256), Expect = 3e-22
Identities = 69/231 (29%), Positives = 108/231 (46%), Gaps = 5/231 (2%)
Frame = +2
Query: 62 AKSMIWLFQSLTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLH 241
A+ +W+ L+ CL + S VNG LGESVT P+ E ++ I W
Sbjct: 2 AQHHLWI-----LLLCLQTWPEAAGKDSEIFTVNGILGESVTFPVNIQEPRQVKIIAWTS 56
Query: 242 DGKSIIFIRPNKAQS-PLIHVTDPKQSNRLNVT-KSYSLQLSNLTMADTGSYTAQITTTS 415
S+ ++ P +++ P++ VT R++ +Y+L +S+L M D G Y A I T +
Sbjct: 57 K-TSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKADINTQA 115
Query: 416 VVFYS---YYLRIFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSML 586
+ + Y L+I+RRLG ++ S N TC + LTCSVE NV+++W S L
Sbjct: 116 DPYTTTKRYNLQIYRRLGKPKITQSLMASVNSTCNVTLTCSVEKEEKNVTYNW----SPL 171
Query: 587 PSEANLTVSWDPKNFRDETYMCIAENPXXXXXXXXXXXXLCKGVINAKNVH 739
E N+ + ++ TY C A+NP LC + H
Sbjct: 172 GEEGNVLQIFQTPEDQELTYTCTAQNPVSNNSDSISARQLCADIAMGFRTH 222
>ref|NP_001171645.1| SLAM family member 6 isoform 4 precursor [Homo sapiens].
Length = 221
Score = 99.0 bits (245), Expect = 6e-21
Identities = 55/131 (41%), Positives = 76/131 (58%), Gaps = 4/131 (3%)
Frame = +2
Query: 452 RLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEANLTVSWDPKNF 631
+L N+QV ++ +N TC +HLTCSVED +DNVSF W+ G+ L S+ NLTVSWDP+
Sbjct: 18 QLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRIS 77
Query: 632 RDETYMCIAENPXXXXXXXXXXXXLCKGVINAKNVHLDTRWIIMVVPLICIV----IFAC 799
++ Y CIAEN LC+ V K + DT+ I+ +V ICIV I
Sbjct: 78 SEQDYTCIAENAVSNLSFSVSAQKLCEDV---KIQYTDTKMILFMVSGICIVFGFIILLL 134
Query: 800 LCVRKKN*QMS 832
L +RK+ +S
Sbjct: 135 LVLRKRRDSLS 145
>ref|NP_002339.2| T-lymphocyte surface antigen Ly-9 isoform a [Homo sapiens].
Length = 655
Score = 95.1 bits (235), Expect = 8e-20
Identities = 88/281 (31%), Positives = 128/281 (45%), Gaps = 18/281 (6%)
Frame = +2
Query: 26 LTALRSPAP-----ISTAKSMIWLFQSLTL---VFCLDPGNTVSQTSSTPLIVNGTLGES 181
LT R+P I TA++ + SL + FC DPG S+ +T V G LGE
Sbjct: 207 LTVSRTPCDPDLPYICTAQNPVSQRSSLPVHVGQFCTDPG--ASRGGTTGETVVGVLGEP 264
Query: 182 VTLPLKFPEEEKIMSITWLHDGKSIIFIRPNKAQS-PLIHVTDPKQSNRLNVTKSYSLQL 358
VTLPL P + WL + I R A + PLI DP ++ ++ SL++
Sbjct: 265 VTLPLALPACRDTEKVVWLFNTSIISKEREEAATADPLIKSRDPYKNRVWVSSQDCSLKI 324
Query: 359 SNLTMADTGSYTAQITT--TSVVFYSYY-LRIFRRLGNLQVVTLTERSRNETCVIHLTCS 529
S L + D G Y A + + +SV ++ L I+RRL ++ S + C I LTCS
Sbjct: 325 SQLKIEDAGPYHAYVCSEASSVTSMTHVTLLIYRRLRKPKITWSLRHSEDGICRISLTCS 384
Query: 530 VEDPNDNVSFSW---QVSGSMLPSEANLTVSWDPKNFRDETYMCIAENPXXXXXXXXXXX 700
VED + V ++W Q + E++L VSW C A NP
Sbjct: 385 VEDGGNTVMYTWTPLQKEAVVSQGESHLNVSWRSSE-NHPNLTCTASNPVSRSSHQFLSE 443
Query: 701 XLCKGVINAKNVHLDTRWI--IMVVPLICIVIFA-CLCVRK 814
+C G +N L WI ++V L+C+ IF+ C+ RK
Sbjct: 444 NICSG--PERNTKL---WIGLFLMVCLLCVGIFSWCIWKRK 479
Score = 92.4 bits (228), Expect = 5e-19
Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 14/223 (6%)
Frame = +2
Query: 41 SPAPISTA--KSMIWLFQSL---TLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFP 205
+P P S+ +S + +F S+ +L+F L G S S P +V+G LG SVTLPL
Sbjct: 12 APGPFSSKPQRSQLQIFSSVLQTSLLFLL-MGLRASGKDSAPTVVSGILGGSVTLPLNIS 70
Query: 206 EEEKIMSITWLHDGKSIIFIRPNKAQSPLIHVTDPKQSNRLNVTK-SYSLQLSNLTMADT 382
+ +I ++ W+ ++ F RP + + ++ RL++TK SYSL +SNLT+ D
Sbjct: 71 VDTEIENVIWIGPKNALAFARPKENVTIMV----KSYLGRLDITKWSYSLCISNLTLNDA 126
Query: 383 GSYTAQITTTS---VVFYSYYLRIFRRLGNLQVVTLTER-SRNETCVIHLTCSVEDPNDN 550
GSY AQI + + L ++ +L QV + + S N +C I L CSV+ +
Sbjct: 127 GSYKAQINQRNFEVTTEEEFTLFVYEQLQEPQVTMKSVKVSENFSCNITLMCSVKGAEKS 186
Query: 551 VSFSWQVSGSMLPSEAN----LTVSWDPKNFRDETYMCIAENP 667
V +SW SE+N LTVS P + D Y+C A+NP
Sbjct: 187 VLYSW-TPREPHASESNGGSILTVSRTPCD-PDLPYICTAQNP 227
>ref|NP_254273.2| SLAM family member 9 isoform 1 [Homo sapiens].
Length = 289
Score = 80.1 bits (196), Expect = 3e-15
Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 8/178 (4%)
Frame = +2
Query: 158 VNGTLGESVTLPLKFPEEEKIMSITWLHDGKSIIFIRPNKAQSPL-IHVTDPKQSNRLN- 331
V L ES++LPL+ P +E++ +I W KS+ + P K P I VT+P +++
Sbjct: 30 VVAVLQESISLPLEIPPDEEVENIIW-SSHKSLATVVPGKEGHPATIMVTNPHYQGQVSF 88
Query: 332 VTKSYSLQLSNLTMADTGSYTAQI---TTTSVVFYSYYLRIFRRLGNLQVVTLTERSRNE 502
+ SYSL +SNL+ D+G Y AQ+ T+ Y + ++R L Q+ E S
Sbjct: 89 LDPSYSLHISNLSWEDSGLYQAQVNLRTSQISTMQQYNICVYRWLSEPQITVNFESSGEG 148
Query: 503 TCVIHLTCSVEDPNDNVSFSWQVSGS---MLPSEANLTVSWDPKNFRDETYMCIAENP 667
C + L CSVE ++++SW G L+ SW P + +Y C A NP
Sbjct: 149 ACSMSLVCSVEKAGMDMTYSWLSRGDSTYTFHEGPVLSTSWRPGD-SALSYTCRANNP 205
>ref|NP_067004.3| SLAM family member 7 [Homo sapiens].
Length = 335
Score = 76.3 bits (186), Expect = 4e-14
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 7/199 (3%)
Frame = +2
Query: 92 LTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKSIIFIRP 271
LTL++ L T S S + G++G +VT PLK + +++ SI W + ++ I+P
Sbjct: 8 LTLIYILWQ-LTGSAASGPVKELVGSVGGAVTFPLK-SKVKQVDSIVWTFNTTPLVTIQP 65
Query: 272 NKAQSPLIHVTDPKQSNRLNVTKS-YSLQLSNLTMADTGSYTAQITTTSVVFYS---YYL 439
+ I VT + R++ YSL+LS L D+G Y I ++S+ S Y L
Sbjct: 66 ---EGGTIIVTQNRNRERVDFPDGGYSLKLSKLKKNDSGIYYVGIYSSSLQQPSTQEYVL 122
Query: 440 RIFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEAN---LTV 610
++ L +V + ++N TCV +LTC +E ++V ++W+ G N L +
Sbjct: 123 HVYEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKALGQAANESHNGSILPI 182
Query: 611 SWDPKNFRDETYMCIAENP 667
SW D T++C+A NP
Sbjct: 183 SW-RWGESDMTFICVARNP 200
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,071,677
Number of extensions: 990145
Number of successful extensions: 2733
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 2699
Number of HSP's successfully gapped: 21
Length of query: 313
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 211
Effective length of database: 14,934,836
Effective search space: 3151250396
Effective search space used: 3151250396
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009460
(941 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 662 0.0
gb|GL894126.2| Sus scrofa unplaced genomic scaffold ChrUScaf2010 157 1e-35
>Sscrofa_Chr04
|| Length = 143465943
Score = 662 bits (334), Expect = 0.0
Identities = 334/334 (100%)
Strand = Plus / Plus
Query: 117 caggaaatacagtttcacaaaccagctcaaccccactgattgtgaacgggaccctggggg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97882879 caggaaatacagtttcacaaaccagctcaaccccactgattgtgaacgggaccctggggg 97882938
Query: 177 agtcagtaactctacccctgaagttccctgaagaagagaagatcatgtccatcacctggc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97882939 agtcagtaactctacccctgaagttccctgaagaagagaagatcatgtccatcacctggc 97882998
Query: 237 ttcacgatggaaaatctatcatcttcatacggccaaataaggcacaaagtccactaatac 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97882999 ttcacgatggaaaatctatcatcttcatacggccaaataaggcacaaagtccactaatac 97883058
Query: 297 acgtaactgatccaaaacagagcaatcgattgaacgtcaccaagtcctactctctgcaac 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97883059 acgtaactgatccaaaacagagcaatcgattgaacgtcaccaagtcctactctctgcaac 97883118
Query: 357 tcagcaacctgacgatggcagacacaggatcttacaccgcccagataaccacaacctccg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97883119 tcagcaacctgacgatggcagacacaggatcttacaccgcccagataaccacaacctccg 97883178
Query: 417 tagtgttttacagttattatctgaggatcttcag 450
||||||||||||||||||||||||||||||||||
Sbjct: 97883179 tagtgttttacagttattatctgaggatcttcag 97883212
Score = 527 bits (266), Expect = e-147
Identities = 266/266 (100%)
Strand = Plus / Plus
Query: 450 gacggctggggaaccttcaggttgtcactctcactgaaaggtctaggaatgagacctgtg 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97886494 gacggctggggaaccttcaggttgtcactctcactgaaaggtctaggaatgagacctgtg 97886553
Query: 510 tgatccacctgacctgctccgtggaggatccaaatgataacgtctcattcagctggcagg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97886554 tgatccacctgacctgctccgtggaggatccaaatgataacgtctcattcagctggcagg 97886613
Query: 570 tctcaggaagcatgcttccaagtgaagcaaacctcactgtctcctgggaccccaagaatt 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97886614 tctcaggaagcatgcttccaagtgaagcaaacctcactgtctcctgggaccccaagaatt 97886673
Query: 630 tcagagacgagacctacatgtgcatagctgagaatcctgtcagcaatgcctcctcctctg 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97886674 tcagagacgagacctacatgtgcatagctgagaatcctgtcagcaatgcctcctcctctg 97886733
Query: 690 tctctgtccagagcctctgcaaaggt 715
||||||||||||||||||||||||||
Sbjct: 97886734 tctctgtccagagcctctgcaaaggt 97886759
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 1 agtttatgagaaattggcaagaacattgactgccttgaggtctccagcaccaatctccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97870920 agtttatgagaaattggcaagaacattgactgccttgaggtctccagcaccaatctccac 97870979
Query: 61 tgctaagagcatgatctggctgttccagtctctcacccttgtcttctgccttgacccagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97870980 tgctaagagcatgatctggctgttccagtctctcacccttgtcttctgccttgacccagg 97871039
Score = 198 bits (100), Expect = 4e-48
Identities = 106/108 (98%)
Strand = Plus / Plus
Query: 712 aggtgttattaatgcaaaaaatgtacacctggacaccagatggattataatggtggttcc 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97887229 aggtgttattaatgcaaaaaatgtacacctggacaccagatggattataatggtggttcc 97887288
Query: 772 tttgatatgtatagtcatctttgcctgcctgtgtgttcggaagaaaaa 819
|||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 97887289 tttgatatgtatagtcatctttgcctgcttgtgtgttcggaggaaaaa 97887336
Score = 157 bits (79), Expect = 1e-35
Identities = 204/243 (83%), Gaps = 2/243 (0%)
Strand = Plus / Minus
Query: 208 agaagagaagatcatgtccatcacctggcttcacgatggaaaatctatcatcttcatacg 267
|||||||||||||| ||||| ||||||||||| ||||||| |||||| ||||||||||
Sbjct: 95968884 agaagagaagatcacatccatgacctggcttcaggatggaatatctattatcttcataca 95968825
Query: 268 gccaaataaggcacaaagtccactaatacacgtaactgatccaaaacagagcaatcgatt 327
||||| | | ||||||||||||||||||| || |||| ||||| || ||| ||
Sbjct: 95968824 gccaagtgaagcacaaagtccactaatactgatagttgattcaaaat-gaaagatcagtt 95968766
Query: 328 gaacgtcaccaagtcctactctctgcaactcagcaacctgacgatggcagacacaggatc 387
|||||||||||||||| |||| |||| |||| |||||||||| ||||||| || ||||
Sbjct: 95968765 gaacgtcaccaagtccaactccttgcagctcaacaacctgacggcggcagacccaagatc 95968706
Query: 388 ttacaccgcccagataaccacaacctccgtagtgttttacagttattatctgaggatctt 447
|||| |||||||||| |||||||||| ||||| ||||||||||| |||||||||||||
Sbjct: 95968705 ttacgtcgcccagatagccacaacctctttagtg-tttacagttatgatctgaggatctt 95968647
Query: 448 cag 450
|||
Sbjct: 95968646 cag 95968644
Score = 77.8 bits (39), Expect = 1e-11
Identities = 74/79 (93%), Gaps = 5/79 (6%)
Strand = Plus / Plus
Query: 867 gcagagaccgtgaggaactta-aatatgcttcctttctct-ctgg-aacactgtctatgc 923
||||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||||||
Sbjct: 97889296 gcagagaccgtgaggaacttagaatatgcttcctt-ctcttctgggaacactgtctatgc 97889354
Query: 924 tcaggtca-ccatgcaaat 941
|||||||| ||||||||||
Sbjct: 97889355 tcaggtcacccatgcaaat 97889373
Score = 73.8 bits (37), Expect = 2e-10
Identities = 44/45 (97%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 824 cagatgtctttcatttcc-tgctcagcaaacccaaggagctggtg 867
|||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 97887948 cagatgtctttcatttccctgctcagcaaacccaaggagctggtg 97887992
>gb|GL894126.2| Sus scrofa unplaced genomic scaffold ChrUScaf2010
Length = 62080
Score = 157 bits (79), Expect = 1e-35
Identities = 204/243 (83%), Gaps = 2/243 (0%)
Strand = Plus / Plus
Query: 208 agaagagaagatcatgtccatcacctggcttcacgatggaaaatctatcatcttcatacg 267
|||||||||||||| ||||| ||||||||||| ||||||| |||||| ||||||||||
Sbjct: 23098 agaagagaagatcacatccatgacctggcttcaggatggaatatctattatcttcataca 23157
Query: 268 gccaaataaggcacaaagtccactaatacacgtaactgatccaaaacagagcaatcgatt 327
||||| | | ||||||||||||||||||| || |||| ||||| || ||| ||
Sbjct: 23158 gccaagtgaagcacaaagtccactaatactgatagttgattcaaaat-gaaagatcagtt 23216
Query: 328 gaacgtcaccaagtcctactctctgcaactcagcaacctgacgatggcagacacaggatc 387
|||||||||||||||| |||| |||| |||| |||||||||| ||||||| || ||||
Sbjct: 23217 gaacgtcaccaagtccaactccttgcagctcaacaacctgacggcggcagacccaagatc 23276
Query: 388 ttacaccgcccagataaccacaacctccgtagtgttttacagttattatctgaggatctt 447
|||| |||||||||| |||||||||| ||||| ||||||||||| |||||||||||||
Sbjct: 23277 ttacgtcgcccagatagccacaacctctttagtg-tttacagttatgatctgaggatctt 23335
Query: 448 cag 450
|||
Sbjct: 23336 cag 23338
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,169,831
Number of extensions: 172
Number of successful extensions: 172
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 10
Length of query: 941
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 920
Effective length of database: 2,808,413,156
Effective search space: 2583740103520
Effective search space used: 2583740103520
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)