Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009515
(847 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179434.1| GPI mannosyltransferase 2 [Bos taurus]. 347 1e-95
Alignment gi|XP_002685741.1| PREDICTED: phosphatidylinositol glycan ancho... 347 1e-95
>ref|NP_001179434.1| GPI mannosyltransferase 2 [Bos taurus].
Length = 493
Score = 347 bits (889), Expect = 1e-95
Identities = 174/208 (83%), Positives = 177/208 (85%)
Frame = +1
Query: 202 MWPLDPSLKEVLGFAVGCRVLTLVLQAFFNAIIPDHRAEAFSPPRFGPSSSVDQLVEGLL 381
MWPLDPS KEVLGFAV CRVLTLVLQA FNAIIPDHRAEAFSPPR PS S DQLVEGLL
Sbjct: 1 MWPLDPSRKEVLGFAVSCRVLTLVLQAVFNAIIPDHRAEAFSPPRLAPSGSADQLVEGLL 60
Query: 382 GGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLVGTEXXXXXXXXXXXXXXXXXXVA 561
GGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLL+G E VA
Sbjct: 61 GGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLLGAELLRPLWGLLNLRSCLLISVA 120
Query: 562 LLNSLFSVLAALALHDLGCLVLHCPRQAFYGALLFCLSPANVFLTAGYSEALFALLTFSA 741
LLNSLFS LAALALHDLGCLVL CPRQA YGALLFCLSPANVFLTAGYSEALFALLTFSA
Sbjct: 121 LLNSLFSALAALALHDLGCLVLRCPRQASYGALLFCLSPANVFLTAGYSEALFALLTFSA 180
Query: 742 MAQLERGRSWTSGLLFALATGVRANGLV 825
M QLERG SWTSGLLFA+ATGVR+NGLV
Sbjct: 181 MGQLERGHSWTSGLLFAMATGVRSNGLV 208
>ref|XP_002685741.1| PREDICTED: phosphatidylinositol glycan anchor biosynthesis, class V
[Bos taurus].
Length = 493
Score = 347 bits (889), Expect = 1e-95
Identities = 174/208 (83%), Positives = 177/208 (85%)
Frame = +1
Query: 202 MWPLDPSLKEVLGFAVGCRVLTLVLQAFFNAIIPDHRAEAFSPPRFGPSSSVDQLVEGLL 381
MWPLDPS KEVLGFAV CRVLTLVLQA FNAIIPDHRAEAFSPPR PS S DQLVEGLL
Sbjct: 1 MWPLDPSRKEVLGFAVSCRVLTLVLQAVFNAIIPDHRAEAFSPPRLAPSGSADQLVEGLL 60
Query: 382 GGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLVGTEXXXXXXXXXXXXXXXXXXVA 561
GGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLL+G E VA
Sbjct: 61 GGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLLGAELLRPLWGLLNLRSCLLISVA 120
Query: 562 LLNSLFSVLAALALHDLGCLVLHCPRQAFYGALLFCLSPANVFLTAGYSEALFALLTFSA 741
LLNSLFS LAALALHDLGCLVL CPRQA YGALLFCLSPANVFLTAGYSEALFALLTFSA
Sbjct: 121 LLNSLFSALAALALHDLGCLVLRCPRQASYGALLFCLSPANVFLTAGYSEALFALLTFSA 180
Query: 742 MAQLERGRSWTSGLLFALATGVRANGLV 825
M QLERG SWTSGLLFA+ATGVR+NGLV
Sbjct: 181 MGQLERGHSWTSGLLFAMATGVRSNGLV 208
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,321,163
Number of extensions: 1096830
Number of successful extensions: 4372
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4348
Number of HSP's successfully gapped: 2
Length of query: 282
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 181
Effective length of database: 14,339,486
Effective search space: 2595446966
Effective search space used: 2595446966
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009515
(847 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535346.1| PREDICTED: similar to phosphatidylinositol glyc... 337 1e-92
>ref|XP_535346.1| PREDICTED: similar to phosphatidylinositol glycan class V [Canis
familiaris].
Length = 493
Score = 337 bits (863), Expect = 1e-92
Identities = 171/208 (82%), Positives = 173/208 (83%)
Frame = +1
Query: 202 MWPLDPSLKEVLGFAVGCRVLTLVLQAFFNAIIPDHRAEAFSPPRFGPSSSVDQLVEGLL 381
MW LD S KEVL FAV CRVLTLVLQA FNAIIPDHRAEAFSPP PS VDQLVEGLL
Sbjct: 1 MWSLDQSRKEVLRFAVSCRVLTLVLQALFNAIIPDHRAEAFSPPHLTPSGVVDQLVEGLL 60
Query: 382 GGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLVGTEXXXXXXXXXXXXXXXXXXVA 561
GGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPL LLVG E VA
Sbjct: 61 GGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLALLVGAELLRPLRALLNLRSRLLISVA 120
Query: 562 LLNSLFSVLAALALHDLGCLVLHCPRQAFYGALLFCLSPANVFLTAGYSEALFALLTFSA 741
LLNSLFSVLA +ALHDLGCLVL CPRQAFYGALLFCLSPANVFL AGYSEALFALLTFSA
Sbjct: 121 LLNSLFSVLATVALHDLGCLVLRCPRQAFYGALLFCLSPANVFLAAGYSEALFALLTFSA 180
Query: 742 MAQLERGRSWTSGLLFALATGVRANGLV 825
M QLERGRSWTSGLLFALATGVR+NGLV
Sbjct: 181 MGQLERGRSWTSGLLFALATGVRSNGLV 208
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,749,488
Number of extensions: 1124148
Number of successful extensions: 4469
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4450
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 180
Effective length of database: 15,474,232
Effective search space: 2785361760
Effective search space used: 2785361760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009515
(847 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356270.1| PREDICTED: GPI mannosyltransferase 2-like is... 378 e-105
Alignment gi|XP_003356269.1| PREDICTED: GPI mannosyltransferase 2-like is... 378 e-105
Alignment gi|XP_003127764.2| PREDICTED: GPI mannosyltransferase 2 isoform... 325 1e-89
>ref|XP_003356270.1| PREDICTED: GPI mannosyltransferase 2-like isoform 2 [Sus scrofa].
Length = 493
Score = 378 bits (970), Expect = e-105
Identities = 190/208 (91%), Positives = 190/208 (91%)
Frame = +1
Query: 202 MWPLDPSLKEVLGFAVGCRVLTLVLQAFFNAIIPDHRAEAFSPPRFGPSSSVDQLVEGLL 381
MWPLDPSLKEVLGFAVGCRVLTLVLQAFFNAIIPDHRAEAFSPPRFGPSSSVDQLVEGLL
Sbjct: 1 MWPLDPSLKEVLGFAVGCRVLTLVLQAFFNAIIPDHRAEAFSPPRFGPSSSVDQLVEGLL 60
Query: 382 GGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLVGTEXXXXXXXXXXXXXXXXXXVA 561
GGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLVGTE VA
Sbjct: 61 GGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLVGTELLRPLWGLLSLRSCLLISVA 120
Query: 562 LLNSLFSVLAALALHDLGCLVLHCPRQAFYGALLFCLSPANVFLTAGYSEALFALLTFSA 741
LLNSLFSVLAALALHDLGCLVLHCPRQAFYGALLFCLSPANVFLTAGYSEALFALLTFSA
Sbjct: 121 LLNSLFSVLAALALHDLGCLVLHCPRQAFYGALLFCLSPANVFLTAGYSEALFALLTFSA 180
Query: 742 MAQLERGRSWTSGLLFALATGVRANGLV 825
MAQLERGRSWTSGLLFALATGVRANGLV
Sbjct: 181 MAQLERGRSWTSGLLFALATGVRANGLV 208
>ref|XP_003356269.1| PREDICTED: GPI mannosyltransferase 2-like isoform 1 [Sus scrofa].
Length = 493
Score = 378 bits (970), Expect = e-105
Identities = 190/208 (91%), Positives = 190/208 (91%)
Frame = +1
Query: 202 MWPLDPSLKEVLGFAVGCRVLTLVLQAFFNAIIPDHRAEAFSPPRFGPSSSVDQLVEGLL 381
MWPLDPSLKEVLGFAVGCRVLTLVLQAFFNAIIPDHRAEAFSPPRFGPSSSVDQLVEGLL
Sbjct: 1 MWPLDPSLKEVLGFAVGCRVLTLVLQAFFNAIIPDHRAEAFSPPRFGPSSSVDQLVEGLL 60
Query: 382 GGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLVGTEXXXXXXXXXXXXXXXXXXVA 561
GGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLVGTE VA
Sbjct: 61 GGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLVGTELLRPLWGLLSLRSCLLISVA 120
Query: 562 LLNSLFSVLAALALHDLGCLVLHCPRQAFYGALLFCLSPANVFLTAGYSEALFALLTFSA 741
LLNSLFSVLAALALHDLGCLVLHCPRQAFYGALLFCLSPANVFLTAGYSEALFALLTFSA
Sbjct: 121 LLNSLFSVLAALALHDLGCLVLHCPRQAFYGALLFCLSPANVFLTAGYSEALFALLTFSA 180
Query: 742 MAQLERGRSWTSGLLFALATGVRANGLV 825
MAQLERGRSWTSGLLFALATGVRANGLV
Sbjct: 181 MAQLERGRSWTSGLLFALATGVRANGLV 208
>ref|XP_003127764.2| PREDICTED: GPI mannosyltransferase 2 isoform 1, partial [Sus
scrofa].
Length = 467
Score = 325 bits (834), Expect = 1e-89
Identities = 164/182 (90%), Positives = 164/182 (90%)
Frame = +1
Query: 280 AFFNAIIPDHRAEAFSPPRFGPSSSVDQLVEGLLGGLSHWDAEHFLFIAEHGYLYEHNFA 459
AFFNAIIPDHRAEAFSPPRFGPSSSVDQLVEGLLGGLSHWDAEHFLFIAEHGYLYEHNFA
Sbjct: 1 AFFNAIIPDHRAEAFSPPRFGPSSSVDQLVEGLLGGLSHWDAEHFLFIAEHGYLYEHNFA 60
Query: 460 FFPGFPLVLLVGTEXXXXXXXXXXXXXXXXXXVALLNSLFSVLAALALHDLGCLVLHCPR 639
FFPGFPLVLLVGTE VALLNSLFSVLAALALHDLGCLVLHCPR
Sbjct: 61 FFPGFPLVLLVGTELLRPLWGLLSLRSCLLISVALLNSLFSVLAALALHDLGCLVLHCPR 120
Query: 640 QAFYGALLFCLSPANVFLTAGYSEALFALLTFSAMAQLERGRSWTSGLLFALATGVRANG 819
QAFYGALLFCLSPANVFLTAGYSEALFALLTFSAMAQLERGRSWTSGLLFALATGVRANG
Sbjct: 121 QAFYGALLFCLSPANVFLTAGYSEALFALLTFSAMAQLERGRSWTSGLLFALATGVRANG 180
Query: 820 LV 825
LV
Sbjct: 181 LV 182
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,455,152
Number of extensions: 707032
Number of successful extensions: 2770
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2757
Number of HSP's successfully gapped: 3
Length of query: 282
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 184
Effective length of database: 8,904,026
Effective search space: 1638340784
Effective search space used: 1638340784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009515
(847 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848813.3| GPI mannosyltransferase 2 isoform 1 [Mus muscul... 315 4e-86
>ref|NP_848813.3| GPI mannosyltransferase 2 isoform 1 [Mus musculus].
Length = 493
Score = 315 bits (806), Expect = 4e-86
Identities = 158/206 (76%), Positives = 165/206 (80%)
Frame = +1
Query: 211 LDPSLKEVLGFAVGCRVLTLVLQAFFNAIIPDHRAEAFSPPRFGPSSSVDQLVEGLLGGL 390
LDPS KEVL FAV CR+LTLVLQA FN IIPDH A+AF PPR PS S DQLVEGLLGGL
Sbjct: 4 LDPSQKEVLRFAVNCRILTLVLQALFNLIIPDHHADAFCPPRLAPSGSADQLVEGLLGGL 63
Query: 391 SHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLVGTEXXXXXXXXXXXXXXXXXXVALLN 570
S WDAEHFLFIAEHGYLYEHNFAFFPGFPL LL+GTE VALLN
Sbjct: 64 SRWDAEHFLFIAEHGYLYEHNFAFFPGFPLALLMGTELLRPLQGLLSQRSCLLVSVALLN 123
Query: 571 SLFSVLAALALHDLGCLVLHCPRQAFYGALLFCLSPANVFLTAGYSEALFALLTFSAMAQ 750
LFSVLAA+ALHDLGCLVLHCPRQA ALLFC+SPANVFL AGYSEALFA LTFSAM Q
Sbjct: 124 LLFSVLAAVALHDLGCLVLHCPRQALCAALLFCISPANVFLAAGYSEALFAFLTFSAMGQ 183
Query: 751 LERGRSWTSGLLFALATGVRANGLVT 828
LERGR W SGLLFALA GVR+NGLV+
Sbjct: 184 LERGRGWASGLLFALAAGVRSNGLVS 209
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,313,360
Number of extensions: 920146
Number of successful extensions: 3467
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3460
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 182
Effective length of database: 12,613,959
Effective search space: 2295740538
Effective search space used: 2295740538
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009515
(847 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001189483.1| GPI mannosyltransferase 2 [Homo sapiens]. 326 2e-89
Alignment gi|NP_060307.2| GPI mannosyltransferase 2 [Homo sapiens]. 326 2e-89
>ref|NP_001189483.1| GPI mannosyltransferase 2 [Homo sapiens].
Length = 493
Score = 326 bits (835), Expect = 2e-89
Identities = 163/209 (77%), Positives = 170/209 (81%)
Frame = +1
Query: 202 MWPLDPSLKEVLGFAVGCRVLTLVLQAFFNAIIPDHRAEAFSPPRFGPSSSVDQLVEGLL 381
MWP DPS KEVL FAV CR+LTL+LQA FNAIIPDH AEAFSPPR PS VDQLVEGLL
Sbjct: 1 MWPQDPSRKEVLRFAVSCRILTLMLQALFNAIIPDHHAEAFSPPRLAPSGFVDQLVEGLL 60
Query: 382 GGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLVGTEXXXXXXXXXXXXXXXXXXVA 561
GGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPL LLVGTE VA
Sbjct: 61 GGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLALLVGTELLRPLRGLLSLRSCLLISVA 120
Query: 562 LLNSLFSVLAALALHDLGCLVLHCPRQAFYGALLFCLSPANVFLTAGYSEALFALLTFSA 741
LN LF +LAA+ALHDLGCLVLHCP Q+FY ALLFCLSPANVFL AGYSEALFALLTFSA
Sbjct: 121 SLNFLFFMLAAVALHDLGCLVLHCPHQSFYAALLFCLSPANVFLAAGYSEALFALLTFSA 180
Query: 742 MAQLERGRSWTSGLLFALATGVRANGLVT 828
M QLERGR WTS LLFA ATGVR+NGLV+
Sbjct: 181 MGQLERGRVWTSVLLFAFATGVRSNGLVS 209
>ref|NP_060307.2| GPI mannosyltransferase 2 [Homo sapiens].
Length = 493
Score = 326 bits (835), Expect = 2e-89
Identities = 163/209 (77%), Positives = 170/209 (81%)
Frame = +1
Query: 202 MWPLDPSLKEVLGFAVGCRVLTLVLQAFFNAIIPDHRAEAFSPPRFGPSSSVDQLVEGLL 381
MWP DPS KEVL FAV CR+LTL+LQA FNAIIPDH AEAFSPPR PS VDQLVEGLL
Sbjct: 1 MWPQDPSRKEVLRFAVSCRILTLMLQALFNAIIPDHHAEAFSPPRLAPSGFVDQLVEGLL 60
Query: 382 GGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLVGTEXXXXXXXXXXXXXXXXXXVA 561
GGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPL LLVGTE VA
Sbjct: 61 GGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLALLVGTELLRPLRGLLSLRSCLLISVA 120
Query: 562 LLNSLFSVLAALALHDLGCLVLHCPRQAFYGALLFCLSPANVFLTAGYSEALFALLTFSA 741
LN LF +LAA+ALHDLGCLVLHCP Q+FY ALLFCLSPANVFL AGYSEALFALLTFSA
Sbjct: 121 SLNFLFFMLAAVALHDLGCLVLHCPHQSFYAALLFCLSPANVFLAAGYSEALFALLTFSA 180
Query: 742 MAQLERGRSWTSGLLFALATGVRANGLVT 828
M QLERGR WTS LLFA ATGVR+NGLV+
Sbjct: 181 MGQLERGRVWTSVLLFAFATGVRSNGLVS 209
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,075,731
Number of extensions: 1100990
Number of successful extensions: 4225
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4208
Number of HSP's successfully gapped: 2
Length of query: 282
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 181
Effective length of database: 14,967,800
Effective search space: 2709171800
Effective search space used: 2709171800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009515
(847 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1118 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 1118 bits (564), Expect = 0.0
Identities = 571/572 (99%), Gaps = 1/572 (0%)
Strand = Plus / Minus
Query: 277 caggctttcttcaatgccatcatcccagaccaccgtgcagaagctttctcgcctcctcgc 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77598332 caggctttcttcaatgccatcatcccagaccaccgtgcagaagctttctcgcctcctcgc 77598273
Query: 337 tttggcccctccagctctgtggaccaacttgtagaaggtctcctgggtggtctgtctcac 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77598272 tttggcccctccagctctgtggaccaacttgtagaaggtctcctgggtggtctgtctcac 77598213
Query: 397 tgggatgctgaacacttcctgttcattgctgagcatggctacctgtatgagcacaacttt 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77598212 tgggatgctgaacacttcctgttcattgctgagcatggctacctgtatgagcacaacttt 77598153
Query: 457 gccttcttccctggtttccccctggtcctgttggtggggactgagttgctgagacccctg 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77598152 gccttcttccctggtttccccctggtcctgttggtggggactgagttgctgagacccctg 77598093
Query: 517 tgggggttactgagcctacggagttgcctactaatctcagtagcattgctcaattccttg 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77598092 tgggggttactgagcctacggagttgcctactaatctcagtagcattgctcaattccttg 77598033
Query: 577 ttctctgtgctggctgcactcgcacttcatgacctgggctgtctggttctgcactgtccc 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77598032 ttctctgtgctggctgcactcgcacttcatgacctgggctgtctggttctgcactgtccc 77597973
Query: 637 cgccaggccttttacggagcactgctcttctgcctcagtcctgccaatgtcttcctgaca 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77597972 cgccaggccttttacggagcactgctcttctgcctcagtcctgccaatgtcttcctgaca 77597913
Query: 697 gctggttactcagaagctttgtttgccctcctgacattcagtgccatggcgcagctggaa 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77597912 gctggttactcagaagctttgtttgccctcctgacattcagtgccatggcgcagctggaa 77597853
Query: 757 aggggccgaagctggactagtggacttctctttgcccttgccactggtgtacgcgccaat 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77597852 aggggccgaagctggactagtggacttctctttgcccttgccactggtgtacgcgccaat 77597793
Query: 817 gggctggtc-acgtcggcttcctcgtgcattc 847
||||||||| ||||||||||||||||||||||
Sbjct: 77597792 gggctggtcaacgtcggcttcctcgtgcattc 77597761
Score = 1118 bits (564), Expect = 0.0
Identities = 571/572 (99%), Gaps = 1/572 (0%)
Strand = Plus / Plus
Query: 277 caggctttcttcaatgccatcatcccagaccaccgtgcagaagctttctcgcctcctcgc 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77705662 caggctttcttcaatgccatcatcccagaccaccgtgcagaagctttctcgcctcctcgc 77705721
Query: 337 tttggcccctccagctctgtggaccaacttgtagaaggtctcctgggtggtctgtctcac 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77705722 tttggcccctccagctctgtggaccaacttgtagaaggtctcctgggtggtctgtctcac 77705781
Query: 397 tgggatgctgaacacttcctgttcattgctgagcatggctacctgtatgagcacaacttt 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77705782 tgggatgctgaacacttcctgttcattgctgagcatggctacctgtatgagcacaacttt 77705841
Query: 457 gccttcttccctggtttccccctggtcctgttggtggggactgagttgctgagacccctg 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77705842 gccttcttccctggtttccccctggtcctgttggtggggactgagttgctgagacccctg 77705901
Query: 517 tgggggttactgagcctacggagttgcctactaatctcagtagcattgctcaattccttg 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77705902 tgggggttactgagcctacggagttgcctactaatctcagtagcattgctcaattccttg 77705961
Query: 577 ttctctgtgctggctgcactcgcacttcatgacctgggctgtctggttctgcactgtccc 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77705962 ttctctgtgctggctgcactcgcacttcatgacctgggctgtctggttctgcactgtccc 77706021
Query: 637 cgccaggccttttacggagcactgctcttctgcctcagtcctgccaatgtcttcctgaca 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77706022 cgccaggccttttacggagcactgctcttctgcctcagtcctgccaatgtcttcctgaca 77706081
Query: 697 gctggttactcagaagctttgtttgccctcctgacattcagtgccatggcgcagctggaa 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77706082 gctggttactcagaagctttgtttgccctcctgacattcagtgccatggcgcagctggaa 77706141
Query: 757 aggggccgaagctggactagtggacttctctttgcccttgccactggtgtacgcgccaat 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77706142 aggggccgaagctggactagtggacttctctttgcccttgccactggtgtacgcgccaat 77706201
Query: 817 gggctggtc-acgtcggcttcctcgtgcattc 847
||||||||| ||||||||||||||||||||||
Sbjct: 77706202 gggctggtcaacgtcggcttcctcgtgcattc 77706233
Score = 274 bits (138), Expect = 7e-71
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 143 agaagcctgaaggagctcagtcctggaagcagcccctctgaattcctggtggtgagagga 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77600031 agaagcctgaaggagctcagtcctggaagcagcccctctgaattcctggtggtgagagga 77599972
Query: 203 tgtggcccctggacccatccctgaaagaggtgctggggtttgccgtcggctgccgtgtcc 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77599971 tgtggcccctggacccatccctgaaagaggtgctggggtttgccgtcggctgccgtgtcc 77599912
Query: 263 tgactctggtgttgcagg 280
||||||||||||||||||
Sbjct: 77599911 tgactctggtgttgcagg 77599894
Score = 274 bits (138), Expect = 7e-71
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 143 agaagcctgaaggagctcagtcctggaagcagcccctctgaattcctggtggtgagagga 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77703576 agaagcctgaaggagctcagtcctggaagcagcccctctgaattcctggtggtgagagga 77703635
Query: 203 tgtggcccctggacccatccctgaaagaggtgctggggtttgccgtcggctgccgtgtcc 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77703636 tgtggcccctggacccatccctgaaagaggtgctggggtttgccgtcggctgccgtgtcc 77703695
Query: 263 tgactctggtgttgcagg 280
||||||||||||||||||
Sbjct: 77703696 tgactctggtgttgcagg 77703713
Score = 196 bits (99), Expect = 1e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 46 taagttaagggtaggctgcacgtcttctgttgtcgctgggtctagagcttgactctagag 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77602233 taagttaagggtaggctgcacgtcttctgttgtcgctgggtctagagcttgactctagag 77602174
Query: 106 agaggaaaggaagaatggaagcctggtgaagaggcagag 144
|||||||||||||||||||||||||||||||||||||||
Sbjct: 77602173 agaggaaaggaagaatggaagcctggtgaagaggcagag 77602135
Score = 196 bits (99), Expect = 1e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 46 taagttaagggtaggctgcacgtcttctgttgtcgctgggtctagagcttgactctagag 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77701374 taagttaagggtaggctgcacgtcttctgttgtcgctgggtctagagcttgactctagag 77701433
Query: 106 agaggaaaggaagaatggaagcctggtgaagaggcagag 144
|||||||||||||||||||||||||||||||||||||||
Sbjct: 77701434 agaggaaaggaagaatggaagcctggtgaagaggcagag 77701472
Score = 97.6 bits (49), Expect = 9e-18
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 1 agccagtgcgcaggcgcgaccgctcggggccccggatggacgagctaag 49
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77603269 agccagtgcgcaggcgcgaccgctcggggccccggatggacgagctaag 77603221
Score = 97.6 bits (49), Expect = 9e-18
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 1 agccagtgcgcaggcgcgaccgctcggggccccggatggacgagctaag 49
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77700338 agccagtgcgcaggcgcgaccgctcggggccccggatggacgagctaag 77700386
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,986,903
Number of extensions: 210
Number of successful extensions: 210
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 8
Length of query: 847
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 826
Effective length of database: 2,808,413,156
Effective search space: 2319749266856
Effective search space used: 2319749266856
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)