Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009551
(966 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002694973.1| PREDICTED: hypothetical protein isoform 1 [B... 387 e-108
Alignment gi|XP_873474.3| PREDICTED: hypothetical protein isoform 2 [Bos ... 387 e-108
Alignment gi|XP_002694974.1| PREDICTED: hypothetical protein isoform 2 [B... 365 e-101
Alignment gi|XP_002701901.1| PREDICTED: hypothetical protein [Bos taurus]. 365 e-101
Alignment gi|NP_001178348.1| GRAM domain-containing protein 1B [Bos tauru... 289 2e-78
Alignment gi|XP_002693082.1| PREDICTED: GRAM domain containing 1B-like is... 289 2e-78
Alignment gi|XP_002693083.1| PREDICTED: GRAM domain containing 1B-like is... 279 2e-75
Alignment gi|XP_595500.4| PREDICTED: GRAM domain containing 1B-like isofo... 279 2e-75
Alignment gi|NP_001073047.1| GRAM domain-containing protein 3 [Bos taurus]. 101 1e-21
Alignment gi|XP_002694411.1| PREDICTED: TBC1 domain family, member 9 (wit... 65 1e-10
>ref|XP_002694973.1| PREDICTED: hypothetical protein isoform 1 [Bos taurus].
Length = 724
Score = 387 bits (994), Expect = e-108
Identities = 186/190 (97%), Positives = 189/190 (99%)
Frame = +2
Query: 326 VPGTPSTQSLGSRNFIRNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA 505
VPGTPSTQSLGSRNFIRNSKKMQSWY+MLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA
Sbjct: 54 VPGTPSTQSLGSRNFIRNSKKMQSWYSMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA 113
Query: 506 LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTES 685
LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTE+
Sbjct: 114 LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTEN 173
Query: 686 EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELCLTSEDEDYVCP 865
EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSEL LTSEDEDYVCP
Sbjct: 174 EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELGLTSEDEDYVCP 233
Query: 866 LQLNGLGSPR 895
LQLNGLGSP+
Sbjct: 234 LQLNGLGSPK 243
Score = 49.3 bits (116), Expect = 5e-06
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = +1
Query: 862 PLATEWSREPQEVGDVIALSDITPSGAADRSREPS 966
PL P++VGDVIALSDITPSGAAD S+EPS
Sbjct: 233 PLQLNGLGSPKDVGDVIALSDITPSGAADHSQEPS 267
>ref|XP_873474.3| PREDICTED: hypothetical protein isoform 2 [Bos taurus].
Length = 724
Score = 387 bits (994), Expect = e-108
Identities = 186/190 (97%), Positives = 189/190 (99%)
Frame = +2
Query: 326 VPGTPSTQSLGSRNFIRNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA 505
VPGTPSTQSLGSRNFIRNSKKMQSWY+MLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA
Sbjct: 54 VPGTPSTQSLGSRNFIRNSKKMQSWYSMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA 113
Query: 506 LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTES 685
LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTE+
Sbjct: 114 LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTEN 173
Query: 686 EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELCLTSEDEDYVCP 865
EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSEL LTSEDEDYVCP
Sbjct: 174 EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELGLTSEDEDYVCP 233
Query: 866 LQLNGLGSPR 895
LQLNGLGSP+
Sbjct: 234 LQLNGLGSPK 243
Score = 49.3 bits (116), Expect = 5e-06
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = +1
Query: 862 PLATEWSREPQEVGDVIALSDITPSGAADRSREPS 966
PL P++VGDVIALSDITPSGAAD S+EPS
Sbjct: 233 PLQLNGLGSPKDVGDVIALSDITPSGAADHSQEPS 267
>ref|XP_002694974.1| PREDICTED: hypothetical protein isoform 2 [Bos taurus].
Length = 713
Score = 365 bits (938), Expect = e-101
Identities = 180/190 (94%), Positives = 182/190 (95%)
Frame = +2
Query: 326 VPGTPSTQSLGSRNFIRNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA 505
VPGTPSTQSLGSRNFIRNSK MLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA
Sbjct: 54 VPGTPSTQSLGSRNFIRNSK-------MLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA 106
Query: 506 LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTES 685
LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTE+
Sbjct: 107 LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTEN 166
Query: 686 EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELCLTSEDEDYVCP 865
EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSEL LTSEDEDYVCP
Sbjct: 167 EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELGLTSEDEDYVCP 226
Query: 866 LQLNGLGSPR 895
LQLNGLGSP+
Sbjct: 227 LQLNGLGSPK 236
Score = 49.3 bits (116), Expect = 5e-06
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = +1
Query: 862 PLATEWSREPQEVGDVIALSDITPSGAADRSREPS 966
PL P++VGDVIALSDITPSGAAD S+EPS
Sbjct: 226 PLQLNGLGSPKDVGDVIALSDITPSGAADHSQEPS 260
>ref|XP_002701901.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 713
Score = 365 bits (938), Expect = e-101
Identities = 180/190 (94%), Positives = 182/190 (95%)
Frame = +2
Query: 326 VPGTPSTQSLGSRNFIRNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA 505
VPGTPSTQSLGSRNFIRNSK MLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA
Sbjct: 54 VPGTPSTQSLGSRNFIRNSK-------MLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA 106
Query: 506 LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTES 685
LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTE+
Sbjct: 107 LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTEN 166
Query: 686 EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELCLTSEDEDYVCP 865
EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSEL LTSEDEDYVCP
Sbjct: 167 EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELGLTSEDEDYVCP 226
Query: 866 LQLNGLGSPR 895
LQLNGLGSP+
Sbjct: 227 LQLNGLGSPK 236
Score = 49.3 bits (116), Expect = 5e-06
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = +1
Query: 862 PLATEWSREPQEVGDVIALSDITPSGAADRSREPS 966
PL P++VGDVIALSDITPSGAAD S+EPS
Sbjct: 226 PLQLNGLGSPKDVGDVIALSDITPSGAADHSQEPS 260
>ref|NP_001178348.1| GRAM domain-containing protein 1B [Bos taurus].
Length = 877
Score = 289 bits (740), Expect = 2e-78
Identities = 135/185 (72%), Positives = 158/185 (85%), Gaps = 6/185 (3%)
Frame = +2
Query: 329 PGTP------STQSLGSRNFIRNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIV 490
P TP S S R+ +NSKK QSWYN+LSPTYKQRNEDFRKLF +LP+ ERLIV
Sbjct: 197 PSTPEQGVQRSCSSQSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIV 256
Query: 491 DYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQ 670
DYSCALQR+ILLQGRLYLSENWICFYSNIFRWET ++++LK++ + KEKTA+LIPNAIQ
Sbjct: 257 DYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQ 316
Query: 671 ICTESEKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELCLTSEDE 850
+CT+SEKHFFTSFGARDR ++++FRLWQNALLEK L P+ELWH VHQCYG+EL LTS+DE
Sbjct: 317 VCTDSEKHFFTSFGARDRTYMMMFRLWQNALLEKPLCPKELWHFVHQCYGNELGLTSDDE 376
Query: 851 DYVCP 865
DYV P
Sbjct: 377 DYVPP 381
>ref|XP_002693082.1| PREDICTED: GRAM domain containing 1B-like isoform 1 [Bos taurus].
Length = 877
Score = 289 bits (740), Expect = 2e-78
Identities = 135/185 (72%), Positives = 158/185 (85%), Gaps = 6/185 (3%)
Frame = +2
Query: 329 PGTP------STQSLGSRNFIRNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIV 490
P TP S S R+ +NSKK QSWYN+LSPTYKQRNEDFRKLF +LP+ ERLIV
Sbjct: 197 PSTPEQGVQRSCSSQSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIV 256
Query: 491 DYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQ 670
DYSCALQR+ILLQGRLYLSENWICFYSNIFRWET ++++LK++ + KEKTA+LIPNAIQ
Sbjct: 257 DYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQ 316
Query: 671 ICTESEKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELCLTSEDE 850
+CT+SEKHFFTSFGARDR ++++FRLWQNALLEK L P+ELWH VHQCYG+EL LTS+DE
Sbjct: 317 VCTDSEKHFFTSFGARDRTYMMMFRLWQNALLEKPLCPKELWHFVHQCYGNELGLTSDDE 376
Query: 851 DYVCP 865
DYV P
Sbjct: 377 DYVPP 381
>ref|XP_002693083.1| PREDICTED: GRAM domain containing 1B-like isoform 2 [Bos taurus].
Length = 892
Score = 279 bits (714), Expect = 2e-75
Identities = 135/200 (67%), Positives = 158/200 (79%), Gaps = 21/200 (10%)
Frame = +2
Query: 329 PGTP------STQSLGSRNFIRNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIV 490
P TP S S R+ +NSKK QSWYN+LSPTYKQRNEDFRKLF +LP+ ERLIV
Sbjct: 197 PSTPEQGVQRSCSSQSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIV 256
Query: 491 DYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQ 670
DYSCALQR+ILLQGRLYLSENWICFYSNIFRWET ++++LK++ + KEKTA+LIPNAIQ
Sbjct: 257 DYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQ 316
Query: 671 ICTESEK---------------HFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLV 805
+CT+SEK HFFTSFGARDR ++++FRLWQNALLEK L P+ELWH V
Sbjct: 317 VCTDSEKYFLHRHFLPRSLSIQHFFTSFGARDRTYMMMFRLWQNALLEKPLCPKELWHFV 376
Query: 806 HQCYGSELCLTSEDEDYVCP 865
HQCYG+EL LTS+DEDYV P
Sbjct: 377 HQCYGNELGLTSDDEDYVPP 396
>ref|XP_595500.4| PREDICTED: GRAM domain containing 1B-like isoform 3 [Bos taurus].
Length = 892
Score = 279 bits (714), Expect = 2e-75
Identities = 135/200 (67%), Positives = 158/200 (79%), Gaps = 21/200 (10%)
Frame = +2
Query: 329 PGTP------STQSLGSRNFIRNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIV 490
P TP S S R+ +NSKK QSWYN+LSPTYKQRNEDFRKLF +LP+ ERLIV
Sbjct: 197 PSTPEQGVQRSCSSQSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIV 256
Query: 491 DYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQ 670
DYSCALQR+ILLQGRLYLSENWICFYSNIFRWET ++++LK++ + KEKTA+LIPNAIQ
Sbjct: 257 DYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQ 316
Query: 671 ICTESEK---------------HFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLV 805
+CT+SEK HFFTSFGARDR ++++FRLWQNALLEK L P+ELWH V
Sbjct: 317 VCTDSEKYFLHRHFLPRSLSIQHFFTSFGARDRTYMMMFRLWQNALLEKPLCPKELWHFV 376
Query: 806 HQCYGSELCLTSEDEDYVCP 865
HQCYG+EL LTS+DEDYV P
Sbjct: 377 HQCYGNELGLTSDDEDYVPP 396
>ref|NP_001073047.1| GRAM domain-containing protein 3 [Bos taurus].
Length = 440
Score = 101 bits (251), Expect = 1e-21
Identities = 50/109 (45%), Positives = 72/109 (66%)
Frame = +2
Query: 413 SPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWET 592
S + + N F KLF +P E L ++CALQ+EIL QG+L++SENWICF+S +F +T
Sbjct: 102 SSSQDKANMHFHKLFLDVPTEEPLRQSFTCALQKEILYQGKLFVSENWICFHSKVFGKDT 161
Query: 593 TISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLI 739
ISI VT +KK KTA L+PNA+ I T ++++ F S +RD + L+
Sbjct: 162 KISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLL 210
>ref|XP_002694411.1| PREDICTED: TBC1 domain family, member 9 (with GRAM domain) [Bos
taurus].
Length = 1249
Score = 64.7 bits (156), Expect = 1e-10
Identities = 39/110 (35%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Frame = +2
Query: 422 YKQRNEDFRKLFSKLPEAERLIVDYSCALQR-EILLQGRLYLSENWICFYSNIFRWETTI 598
+K+ F +LF +PE E+L+ YSC+ + ++ QG +YLS N +CFYS + E +
Sbjct: 123 FKEAIVKFHRLFG-MPEEEKLVNYYSCSYWKGKVPRQGWMYLSINHLCFYSFLMGREAKL 181
Query: 599 SIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRL 748
I+ ++T L+K T L+P+ I++ T S +HFF+ F + F L+ +L
Sbjct: 182 VIRWVDITQLEKNATL-LLPDVIKVSTRSSEHFFSVFLNINETFKLMEQL 230
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,512,068
Number of extensions: 884821
Number of successful extensions: 4144
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4086
Number of HSP's successfully gapped: 21
Length of query: 322
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 220
Effective length of database: 14,306,398
Effective search space: 3147407560
Effective search space used: 3147407560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009551
(966 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541699.2| PREDICTED: similar to CG3304-PA, isoform A [Can... 387 e-108
Alignment gi|XP_546470.2| PREDICTED: similar to CG3304-PA, isoform A isof... 289 2e-78
Alignment gi|XP_859362.1| PREDICTED: similar to CG3304-PA, isoform A isof... 286 3e-77
Alignment gi|XP_849625.1| PREDICTED: similar to ZC328.3 [Canis familiaris]. 213 3e-55
Alignment gi|XP_531891.2| PREDICTED: similar to CG3304-PA, isoform A [Can... 104 1e-22
Alignment gi|XP_854022.1| PREDICTED: similar to CG3304-PA, isoform A [Can... 92 7e-19
Alignment gi|XP_533283.2| PREDICTED: similar to Y45F10A.6b isoform 1 [Can... 65 1e-10
Alignment gi|XP_855810.1| PREDICTED: similar to Y45F10A.6b isoform 4 [Can... 65 1e-10
Alignment gi|XP_549172.2| PREDICTED: similar to TBC1 domain family member... 59 7e-09
Alignment gi|XP_862346.1| PREDICTED: similar to TBC1 domain family member... 59 7e-09
>ref|XP_541699.2| PREDICTED: similar to CG3304-PA, isoform A [Canis familiaris].
Length = 987
Score = 387 bits (994), Expect = e-108
Identities = 186/190 (97%), Positives = 189/190 (99%)
Frame = +2
Query: 329 PGTPSTQSLGSRNFIRNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCAL 508
PGTPSTQSLGSRNFIRNSKKMQSWY+MLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCAL
Sbjct: 318 PGTPSTQSLGSRNFIRNSKKMQSWYSMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCAL 377
Query: 509 QREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTESE 688
QREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTESE
Sbjct: 378 QREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTESE 437
Query: 689 KHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELCLTSEDEDYVCPL 868
KHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSEL LTSEDEDYVCPL
Sbjct: 438 KHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELGLTSEDEDYVCPL 497
Query: 869 QLNGLGSPRK 898
QLNGLGSP++
Sbjct: 498 QLNGLGSPKE 507
Score = 50.4 bits (119), Expect = 2e-06
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = +1
Query: 862 PLATEWSREPQEVGDVIALSDITPSGAADRSREPS 966
PL P+EVGDVIALSDITPSGAAD S+EPS
Sbjct: 496 PLQLNGLGSPKEVGDVIALSDITPSGAADNSQEPS 530
>ref|XP_546470.2| PREDICTED: similar to CG3304-PA, isoform A isoform 1 [Canis
familiaris].
Length = 877
Score = 289 bits (740), Expect = 2e-78
Identities = 135/185 (72%), Positives = 158/185 (85%), Gaps = 6/185 (3%)
Frame = +2
Query: 329 PGTP------STQSLGSRNFIRNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIV 490
P TP S S R+ +NSKK QSWYN+LSPTYKQRNEDFRKLF +LP+ ERLIV
Sbjct: 197 PSTPEQGVQRSCSSQSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIV 256
Query: 491 DYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQ 670
DYSCALQR+ILLQGRLYLSENWICFYSNIFRWET ++++LK++ + KEKTA+LIPNAIQ
Sbjct: 257 DYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQ 316
Query: 671 ICTESEKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELCLTSEDE 850
+CT+SEKHFFTSFGARDR ++++FRLWQNALLEK L P+ELWH VHQCYG+EL LTS+DE
Sbjct: 317 VCTDSEKHFFTSFGARDRTYMMMFRLWQNALLEKPLCPKELWHFVHQCYGNELGLTSDDE 376
Query: 851 DYVCP 865
DYV P
Sbjct: 377 DYVPP 381
>ref|XP_859362.1| PREDICTED: similar to CG3304-PA, isoform A isoform 2 [Canis
familiaris].
Length = 745
Score = 286 bits (731), Expect = 3e-77
Identities = 130/169 (76%), Positives = 153/169 (90%)
Frame = +2
Query: 359 SRNFIRNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRL 538
S++ R SKK QSWYN+LSPTYKQRNEDFRKLF +LP+ ERLIVDYSCALQR+ILLQGRL
Sbjct: 77 SKSHKRLSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQRDILLQGRL 136
Query: 539 YLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGAR 718
YLSENWICFYSNIFRWET ++++LK++ + KEKTA+LIPNAIQ+CT+SEKHFFTSFGAR
Sbjct: 137 YLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKHFFTSFGAR 196
Query: 719 DRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELCLTSEDEDYVCP 865
DR ++++FRLWQNALLEK L P+ELWH VHQCYG+EL LTS+DEDYV P
Sbjct: 197 DRTYMMMFRLWQNALLEKPLCPKELWHFVHQCYGNELGLTSDDEDYVPP 245
>ref|XP_849625.1| PREDICTED: similar to ZC328.3 [Canis familiaris].
Length = 677
Score = 213 bits (541), Expect = 3e-55
Identities = 99/145 (68%), Positives = 121/145 (83%)
Frame = +2
Query: 413 SPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWET 592
S TYK RNE++++ F+ LP+ E+LI DY+CALQR+ILLQGRLYLSENW+CFYSNIFRWET
Sbjct: 75 SSTYKDRNEEYKRQFTHLPDTEKLIADYACALQRDILLQGRLYLSENWLCFYSNIFRWET 134
Query: 593 TISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRLWQNALLEK 772
TI I LK +T + KEKTA+LIPNAIQI TE EK FFTSFGARDR +L IFRLWQN LL+K
Sbjct: 135 TICIALKNITFMTKEKTARLIPNAIQIVTEGEKFFFTSFGARDRSYLSIFRLWQNVLLDK 194
Query: 773 TLSPRELWHLVHQCYGSELCLTSED 847
+L+ +E W L+ Q YG+EL L +E+
Sbjct: 195 SLTRQEFWQLLQQNYGNELGLNAEE 219
>ref|XP_531891.2| PREDICTED: similar to CG3304-PA, isoform A [Canis familiaris].
Length = 466
Score = 104 bits (259), Expect = 1e-22
Identities = 55/122 (45%), Positives = 77/122 (63%)
Frame = +2
Query: 374 RNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSEN 553
+N KM S YK N F KLF +P E L ++CALQ+EIL QG+L++SEN
Sbjct: 104 KNESKMDRKKYSSSSQYKA-NMHFHKLFLDVPTEEPLRQSFTCALQKEILYQGKLFVSEN 162
Query: 554 WICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFL 733
WICF+S +F +T ISI + VT +KK KTA L+PNA+ I T ++++ F S +RD +
Sbjct: 163 WICFHSKVFGKDTKISIPVFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 222
Query: 734 LI 739
L+
Sbjct: 223 LL 224
>ref|XP_854022.1| PREDICTED: similar to CG3304-PA, isoform A [Canis familiaris].
Length = 500
Score = 92.0 bits (227), Expect = 7e-19
Identities = 53/147 (36%), Positives = 87/147 (59%), Gaps = 3/147 (2%)
Frame = +2
Query: 434 NEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQLK 613
N+ + KLF +P E ++ SCALQR++LLQGRLY+S NW+CF++++F + + I +
Sbjct: 211 NQQYHKLFKDIPLEEVVLKVCSCALQRDLLLQGRLYISPNWLCFHASLFGKDIKVVIPVV 270
Query: 614 EVTCLKKEKTAKLIPNAIQICTE-SEKHFFTSFGARDRCFLLIFRLWQN--ALLEKTLSP 784
V +KK K A+L+PN + I T S+K+ F S +RD + ++ R+ + +K+LS
Sbjct: 271 SVQMIKKHKMARLLPNGLAITTNTSQKYVFVSLLSRDSVYDMLRRVCTHLQPSSKKSLSV 330
Query: 785 RELWHLVHQCYGSELCLTSEDEDYVCP 865
RE + +C E+ + VCP
Sbjct: 331 RE-FPEEPECESLEVLIPEMKWRKVCP 356
>ref|XP_533283.2| PREDICTED: similar to Y45F10A.6b isoform 1 [Canis familiaris].
Length = 1266
Score = 64.7 bits (156), Expect = 1e-10
Identities = 39/110 (35%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Frame = +2
Query: 422 YKQRNEDFRKLFSKLPEAERLIVDYSCALQR-EILLQGRLYLSENWICFYSNIFRWETTI 598
+K+ F +LF +PE E+L+ YSC+ + ++ QG +YLS N +CFYS + E +
Sbjct: 141 FKEAIVKFHRLFG-MPEEEKLVNYYSCSYWKGKVPRQGWMYLSINHLCFYSFLMGREAKL 199
Query: 599 SIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRL 748
I+ ++T L+K T L+P+ I++ T S +HFF+ F + F L+ +L
Sbjct: 200 VIRWVDITQLEKNATL-LLPDVIKVSTRSSEHFFSVFLNINETFKLMEQL 248
>ref|XP_855810.1| PREDICTED: similar to Y45F10A.6b isoform 4 [Canis familiaris].
Length = 1175
Score = 64.7 bits (156), Expect = 1e-10
Identities = 39/110 (35%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Frame = +2
Query: 422 YKQRNEDFRKLFSKLPEAERLIVDYSCALQR-EILLQGRLYLSENWICFYSNIFRWETTI 598
+K+ F +LF +PE E+L+ YSC+ + ++ QG +YLS N +CFYS + E +
Sbjct: 141 FKEAIVKFHRLFG-MPEEEKLVNYYSCSYWKGKVPRQGWMYLSINHLCFYSFLMGREAKL 199
Query: 599 SIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRL 748
I+ ++T L+K T L+P+ I++ T S +HFF+ F + F L+ +L
Sbjct: 200 VIRWVDITQLEKNATL-LLPDVIKVSTRSSEHFFSVFLNINETFKLMEQL 248
>ref|XP_549172.2| PREDICTED: similar to TBC1 domain family member 8 (Vascular
Rab-GAP/TBC-containing protein) (BUB2-like protein 1)
isoform 1 [Canis familiaris].
Length = 1130
Score = 58.9 bits (141), Expect = 7e-09
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Frame = +2
Query: 443 FRKLFSKLPEAERLIVDYSCALQR-EILLQGRLYLSENWICFYSNIFRWETTISIQLKEV 619
F K F LPE E+L+ YSC+ + + QG LYLS N++ FYS + E + I V
Sbjct: 149 FGKCFG-LPEQEKLVTYYSCSYWKGRVPCQGWLYLSTNFLSFYSFLLGSEIKLIISWDAV 207
Query: 620 TCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRLWQNAL 763
+ L+K L+ +I +C++ E H+F+ F + +LL+ +L A+
Sbjct: 208 SKLEKTSNV-LLTESIHVCSQGENHYFSMFLHINETYLLMEQLANYAI 254
>ref|XP_862346.1| PREDICTED: similar to TBC1 domain family member 8 (Vascular
Rab-GAP/TBC-containing protein) (BUB2-like protein 1)
isoform 3 [Canis familiaris].
Length = 1111
Score = 58.9 bits (141), Expect = 7e-09
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Frame = +2
Query: 443 FRKLFSKLPEAERLIVDYSCALQR-EILLQGRLYLSENWICFYSNIFRWETTISIQLKEV 619
F K F LPE E+L+ YSC+ + + QG LYLS N++ FYS + E + I V
Sbjct: 149 FGKCFG-LPEQEKLVTYYSCSYWKGRVPCQGWLYLSTNFLSFYSFLLGSEIKLIISWDAV 207
Query: 620 TCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRLWQNAL 763
+ L+K L+ +I +C++ E H+F+ F + +LL+ +L A+
Sbjct: 208 SKLEKTSNV-LLTESIHVCSQGENHYFSMFLHINETYLLMEQLANYAI 254
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,667,175
Number of extensions: 870730
Number of successful extensions: 4296
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4251
Number of HSP's successfully gapped: 13
Length of query: 322
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 219
Effective length of database: 15,440,896
Effective search space: 3381556224
Effective search space used: 3381556224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009551
(966 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127082.2| PREDICTED: GRAM domain-containing protein 1A... 367 e-102
Alignment gi|XP_003130028.2| PREDICTED: GRAM domain-containing protein 1B... 287 5e-78
Alignment gi|XP_003132713.2| PREDICTED: GRAM domain-containing protein 1C... 218 5e-57
Alignment gi|XP_003360750.1| PREDICTED: GRAM domain-containing protein 3-... 102 4e-22
Alignment gi|XP_001929143.2| PREDICTED: LOW QUALITY PROTEIN: GRAM domain-... 92 4e-19
Alignment gi|NP_001230512.1| GRAM domain containing 2-like [Sus scrofa]. 92 6e-19
Alignment gi|XP_003129230.2| PREDICTED: LOW QUALITY PROTEIN: TBC1 domain ... 66 3e-11
Alignment gi|XP_003135341.2| PREDICTED: TBC1 domain family member 8B [Sus... 60 2e-09
Alignment gi|XP_003123695.1| PREDICTED: TBC1 domain family member 9B isof... 58 9e-09
Alignment gi|XP_003123696.1| PREDICTED: TBC1 domain family member 9B isof... 58 9e-09
>ref|XP_003127082.2| PREDICTED: GRAM domain-containing protein 1A isoform 1 [Sus
scrofa].
Length = 713
Score = 367 bits (942), Expect = e-102
Identities = 181/191 (94%), Positives = 183/191 (95%)
Frame = +2
Query: 326 VPGTPSTQSLGSRNFIRNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA 505
VPGTPSTQSLGSRNFIRNSK MLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA
Sbjct: 54 VPGTPSTQSLGSRNFIRNSK-------MLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA 106
Query: 506 LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTES 685
LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTES
Sbjct: 107 LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTES 166
Query: 686 EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELCLTSEDEDYVCP 865
EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSEL LTSEDEDYVCP
Sbjct: 167 EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELGLTSEDEDYVCP 226
Query: 866 LQLNGLGSPRK 898
LQLNGLGSP++
Sbjct: 227 LQLNGLGSPKE 237
Score = 52.4 bits (124), Expect = 4e-07
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = +1
Query: 862 PLATEWSREPQEVGDVIALSDITPSGAADRSREPS 966
PL P+EVGDVIALSDITPSGAADRS+EPS
Sbjct: 226 PLQLNGLGSPKEVGDVIALSDITPSGAADRSQEPS 260
>ref|XP_003130028.2| PREDICTED: GRAM domain-containing protein 1B [Sus scrofa].
Length = 966
Score = 287 bits (735), Expect = 5e-78
Identities = 129/164 (78%), Positives = 152/164 (92%)
Frame = +2
Query: 374 RNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSEN 553
+NSKK QSWYN+LSPTYKQRNEDFRKLF +LP++ERLIVDYSCALQR+ILLQGRLYLSEN
Sbjct: 71 KNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDSERLIVDYSCALQRDILLQGRLYLSEN 130
Query: 554 WICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFL 733
WICFYSNIFRWET ++++LK++ + KEKTA+LIPNAIQ+CT+SEKHFFTSFGARDR ++
Sbjct: 131 WICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKHFFTSFGARDRTYM 190
Query: 734 LIFRLWQNALLEKTLSPRELWHLVHQCYGSELCLTSEDEDYVCP 865
++FRLWQNALLEK L P+ELWH VHQCYG+EL LTS+DEDYV P
Sbjct: 191 MMFRLWQNALLEKPLCPKELWHFVHQCYGNELGLTSDDEDYVPP 234
>ref|XP_003132713.2| PREDICTED: GRAM domain-containing protein 1C-like, partial [Sus
scrofa].
Length = 486
Score = 218 bits (554), Expect = 5e-57
Identities = 102/145 (70%), Positives = 123/145 (84%)
Frame = +2
Query: 413 SPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWET 592
S TYK RNE+++K F+ LP+ E+LI DY+CALQR+ILLQGRLYLSENW+CFYSNIFRWET
Sbjct: 62 SSTYKDRNEEYKKQFTHLPDTEKLIADYACALQRDILLQGRLYLSENWLCFYSNIFRWET 121
Query: 593 TISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRLWQNALLEK 772
TISI LK +T + KEKTA+LIPNAIQI TE EK FFTSFGARDR +L IFRLWQN LL+K
Sbjct: 122 TISIALKNITFMTKEKTARLIPNAIQIVTEGEKFFFTSFGARDRSYLSIFRLWQNVLLDK 181
Query: 773 TLSPRELWHLVHQCYGSELCLTSED 847
+L+ +E W L+ Q YG+EL LT+E+
Sbjct: 182 SLTRQEFWQLLQQNYGTELGLTAEE 206
>ref|XP_003360750.1| PREDICTED: GRAM domain-containing protein 3-like [Sus scrofa].
Length = 415
Score = 102 bits (253), Expect = 4e-22
Identities = 62/167 (37%), Positives = 94/167 (56%), Gaps = 3/167 (1%)
Frame = +2
Query: 359 SRNFIRNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRL 538
S+N + +K S S + + N F KLF +P E L ++CALQ+EIL QG+L
Sbjct: 72 SKNDAKIERKKSS-----SSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKL 126
Query: 539 YLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGAR 718
++S+NWICF+S +F +T ISI VT +KK KTA L+PNA+ I T ++++ F S +R
Sbjct: 127 FVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSR 186
Query: 719 DRCFLLIFRL---WQNALLEKTLSPRELWHLVHQCYGSELCLTSEDE 850
D + L+ + +NA + + +P L + S L L DE
Sbjct: 187 DSTYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDE 233
>ref|XP_001929143.2| PREDICTED: LOW QUALITY PROTEIN: GRAM domain-containing protein 2
[Sus scrofa].
Length = 349
Score = 92.0 bits (227), Expect = 4e-19
Identities = 53/147 (36%), Positives = 87/147 (59%), Gaps = 3/147 (2%)
Frame = +2
Query: 434 NEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQLK 613
N+ + KLF +P E ++ SCALQR++LLQGRLY+S NW+CF++++F + + I +
Sbjct: 67 NQQYHKLFKDIPLEEVVLKVCSCALQRDLLLQGRLYISPNWLCFHASLFGKDIKVVIPVV 126
Query: 614 EVTCLKKEKTAKLIPNAIQICTE-SEKHFFTSFGARDRCFLLIFRLWQN--ALLEKTLSP 784
V +KK K A+L+PN + I T S+K+ F S +RD + ++ R+ + +K+LS
Sbjct: 127 SVQMIKKHKMARLLPNGLAITTNTSQKYVFVSLLSRDSVYDMLRRVCTHLQPSSKKSLSV 186
Query: 785 RELWHLVHQCYGSELCLTSEDEDYVCP 865
RE + +C E+ + VCP
Sbjct: 187 RE-FPEEPECESLEVLIPEMKWRKVCP 212
>ref|NP_001230512.1| GRAM domain containing 2-like [Sus scrofa].
Length = 365
Score = 91.7 bits (226), Expect = 6e-19
Identities = 48/122 (39%), Positives = 78/122 (63%), Gaps = 3/122 (2%)
Frame = +2
Query: 434 NEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQLK 613
N+ + KLF +P E ++ SCALQR++LLQGRLY+S NW+CF++++F + + I +
Sbjct: 118 NQQYHKLFKDIPLEEAVLKVCSCALQRDLLLQGRLYISPNWLCFHASLFGRDIKVVIPVV 177
Query: 614 EVTCLKKEKTAKLIPNAIQICTE-SEKHFFTSFGARDRCFLLIFRLWQN--ALLEKTLSP 784
V +KK K A+L+PN + I T S+K+ F S +RD + ++ R+ + +K+LS
Sbjct: 178 SVQMIKKHKMARLLPNGLAITTNTSQKYVFVSLLSRDSVYDMLRRVCTHLQPSSKKSLSV 237
Query: 785 RE 790
RE
Sbjct: 238 RE 239
>ref|XP_003129230.2| PREDICTED: LOW QUALITY PROTEIN: TBC1 domain family member 9 [Sus
scrofa].
Length = 869
Score = 66.2 bits (160), Expect = 3e-11
Identities = 40/110 (36%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Frame = +2
Query: 422 YKQRNEDFRKLFSKLPEAERLIVDYSCALQR-EILLQGRLYLSENWICFYSNIFRWETTI 598
+K+ F +LF +PE E+L+ YSC+ + ++ QG +YLS N +CFYS + E +
Sbjct: 143 FKEAIVKFHRLFG-MPEEEKLVNYYSCSYWKGKVPRQGWMYLSINHLCFYSFLMGREAKL 201
Query: 599 SIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRL 748
I+ ++T L+K T L+P+ IQ+ T S +HFF+ F + F L+ +L
Sbjct: 202 VIRWVDITQLEKNATL-LLPDVIQVSTRSSEHFFSVFLNINETFKLMEQL 250
>ref|XP_003135341.2| PREDICTED: TBC1 domain family member 8B [Sus scrofa].
Length = 1120
Score = 59.7 bits (143), Expect = 2e-09
Identities = 39/109 (35%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Frame = +2
Query: 443 FRKLFSKLPEAERLIVDYSCALQR-EILLQGRLYLSENWICFYSNIFRWETTISIQLKEV 619
F K F LPE E+L+ YSC+ + + QG LYLS N++ FYS + E + I V
Sbjct: 147 FEKCFG-LPEQEKLVTYYSCSYWKGRVPCQGWLYLSTNFLSFYSFLLGSEIKLIISWDAV 205
Query: 620 TCLKKEKTAKLI-PNAIQICTESEKHFFTSFGARDRCFLLIFRLWQNAL 763
+ K EKT+ +I +I +C++ E H+F+ F ++ +LL+ +L A+
Sbjct: 206 S--KLEKTSNVILTESIHVCSQGENHYFSMFLHINQTYLLMEQLANYAI 252
>ref|XP_003123695.1| PREDICTED: TBC1 domain family member 9B isoform 1 [Sus scrofa].
Length = 1234
Score = 57.8 bits (138), Expect = 9e-09
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Frame = +2
Query: 422 YKQRNEDFRKLFSKLPEAERLIVDYSCALQR-EILLQGRLYLSENWICFYSNIFRWETTI 598
+K+ RK F +PE E+L+ YSC+ + + QG LYL+ N +CFYS + E ++
Sbjct: 137 FKEAELKMRKQFG-MPEGEKLVNYYSCSYWKGHVPRQGWLYLTVNHLCFYSFLLGKEVSL 195
Query: 599 SIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSF 709
++ +VT L+K T L P +I++ T ++ FF+ F
Sbjct: 196 VVRWVDVTRLEKNATL-LFPESIRVDTRDQELFFSMF 231
>ref|XP_003123696.1| PREDICTED: TBC1 domain family member 9B isoform 2 [Sus scrofa].
Length = 1251
Score = 57.8 bits (138), Expect = 9e-09
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Frame = +2
Query: 422 YKQRNEDFRKLFSKLPEAERLIVDYSCALQR-EILLQGRLYLSENWICFYSNIFRWETTI 598
+K+ RK F +PE E+L+ YSC+ + + QG LYL+ N +CFYS + E ++
Sbjct: 137 FKEAELKMRKQFG-MPEGEKLVNYYSCSYWKGHVPRQGWLYLTVNHLCFYSFLLGKEVSL 195
Query: 599 SIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSF 709
++ +VT L+K T L P +I++ T ++ FF+ F
Sbjct: 196 VVRWVDVTRLEKNATL-LFPESIRVDTRDQELFFSMF 231
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,747,350
Number of extensions: 630623
Number of successful extensions: 2733
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2700
Number of HSP's successfully gapped: 11
Length of query: 322
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 223
Effective length of database: 8,879,129
Effective search space: 1980045767
Effective search space used: 1980045767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009551
(966 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082174.3| GRAM domain-containing protein 1A [Mus musculus]. 380 e-105
Alignment gi|NP_766356.1| GRAM domain-containing protein 1B [Mus musculus]. 289 2e-78
Alignment gi|NP_080516.2| GRAM domain-containing protein 3 [Mus musculus]. 101 8e-22
Alignment gi|NP_001028670.1| GRAM domain-containing protein 2 [Mus muscul... 88 1e-17
Alignment gi|NP_001074968.1| TBC1 domain family member 8B [Mus musculus]. 61 1e-09
Alignment gi|NP_001104774.1| TBC1 domain family member 9 isoform 1 [Mus m... 60 2e-09
Alignment gi|NP_084021.2| TBC1 domain family member 9B [Mus musculus]. 59 7e-09
Alignment gi|NP_061245.3| TBC1 domain family member 8 [Mus musculus]. 50 3e-06
>ref|NP_082174.3| GRAM domain-containing protein 1A [Mus musculus].
Length = 722
Score = 380 bits (975), Expect = e-105
Identities = 184/191 (96%), Positives = 187/191 (97%)
Frame = +2
Query: 326 VPGTPSTQSLGSRNFIRNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA 505
V GT STQSLGSRNFIRNSKKMQSWY+ML PTYKQRNEDFRKLFSKLPEAERLIVDYSCA
Sbjct: 56 VSGTLSTQSLGSRNFIRNSKKMQSWYSMLCPTYKQRNEDFRKLFSKLPEAERLIVDYSCA 115
Query: 506 LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTES 685
LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTES
Sbjct: 116 LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTES 175
Query: 686 EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELCLTSEDEDYVCP 865
EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSEL LTSEDEDYVCP
Sbjct: 176 EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELGLTSEDEDYVCP 235
Query: 866 LQLNGLGSPRK 898
LQLNGLGSP++
Sbjct: 236 LQLNGLGSPKE 246
Score = 48.9 bits (115), Expect = 6e-06
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = +1
Query: 862 PLATEWSREPQEVGDVIALSDITPSGAADRSREPS 966
PL P+EVGDVIALSDI+PSGAAD S+EPS
Sbjct: 235 PLQLNGLGSPKEVGDVIALSDISPSGAADHSQEPS 269
>ref|NP_766356.1| GRAM domain-containing protein 1B [Mus musculus].
Length = 878
Score = 289 bits (740), Expect = 2e-78
Identities = 135/185 (72%), Positives = 158/185 (85%), Gaps = 6/185 (3%)
Frame = +2
Query: 329 PGTP------STQSLGSRNFIRNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIV 490
P TP S S R+ +NSKK QSWYN+LSPTYKQRNEDFRKLF +LP+ ERLIV
Sbjct: 198 PSTPEQGVQRSCSSQSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIV 257
Query: 491 DYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQ 670
DYSCALQR+ILLQGRLYLSENWICFYSNIFRWET ++++LK++ + KEKTA+LIPNAIQ
Sbjct: 258 DYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQ 317
Query: 671 ICTESEKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELCLTSEDE 850
+CT+SEKHFFTSFGARDR ++++FRLWQNALLEK L P+ELWH VHQCYG+EL LTS+DE
Sbjct: 318 VCTDSEKHFFTSFGARDRTYMMMFRLWQNALLEKPLCPKELWHFVHQCYGNELGLTSDDE 377
Query: 851 DYVCP 865
DYV P
Sbjct: 378 DYVPP 382
>ref|NP_080516.2| GRAM domain-containing protein 3 [Mus musculus].
Length = 432
Score = 101 bits (252), Expect = 8e-22
Identities = 53/109 (48%), Positives = 72/109 (66%)
Frame = +2
Query: 413 SPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWET 592
S YK N F KLF +P E L ++CALQ+EIL QG+L++SENWICF+S +F +T
Sbjct: 103 SSQYKA-NMHFHKLFLDVPTEEPLRQSFTCALQKEILYQGKLFVSENWICFHSKVFGKDT 161
Query: 593 TISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLI 739
ISI VT +KK KTA L+PNA+ I T ++++ F S +RD + LI
Sbjct: 162 KISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLI 210
>ref|NP_001028670.1| GRAM domain-containing protein 2 [Mus musculus].
Length = 312
Score = 87.8 bits (216), Expect = 1e-17
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Frame = +2
Query: 434 NEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQLK 613
N+ + KLF +P E ++ SCALQR++LL GRLY+S NW+CF++++F + + I +
Sbjct: 65 NQQYHKLFKDIPLEEVVLKVCSCALQRDLLLHGRLYISPNWLCFHASLFGKDIKVVIPVV 124
Query: 614 EVTCLKKEKTAKLIPNAIQICTE-SEKHFFTSFGARDRCFLLIFRL 748
V +KK K A+L+PN + I T S+K+ F S +RD + ++ R+
Sbjct: 125 SVQLIKKHKMARLLPNGLAITTNTSQKYVFVSLLSRDSVYDMLRRV 170
>ref|NP_001074968.1| TBC1 domain family member 8B [Mus musculus].
Length = 1114
Score = 61.2 bits (147), Expect = 1e-09
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Frame = +2
Query: 443 FRKLFSKLPEAERLIVDYSCALQR-EILLQGRLYLSENWICFYSNIFRWETTISIQLKEV 619
F K F LPE E+L+ YSC+ R + QG LYLS N++ FYS + E + I +
Sbjct: 147 FEKSFG-LPEQEKLVTYYSCSYWRGRVPCQGWLYLSTNFLSFYSFLLGSEIKLIISWDAI 205
Query: 620 TCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRLWQNAL 763
+ L+K T ++ +I +C++ E H+F+ F + +LL+ +L A+
Sbjct: 206 SKLEKTSTV-ILTESIHVCSQGENHYFSMFLHINETYLLMEQLANYAI 252
>ref|NP_001104774.1| TBC1 domain family member 9 isoform 1 [Mus musculus].
Length = 1264
Score = 60.5 bits (145), Expect = 2e-09
Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Frame = +2
Query: 422 YKQRNEDFRKLFSKLPEAERLIVDYSCALQR-EILLQGRLYLSENWICFYSNIFRWETTI 598
+K+ F +LF +PE E+L+ YSC+ + + QG +YLS N +CF S + E +
Sbjct: 141 FKEAIVKFHRLFG-MPEEEKLVNYYSCSYWKGRVPRQGWMYLSINHLCFSSFLMGREAKL 199
Query: 599 SIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRL 748
I+ ++T L+K T L+P+ I++ T S +HFF+ F + F L+ +L
Sbjct: 200 VIRWVDITQLEKNATL-LLPDMIKVSTRSSEHFFSVFLNINETFKLMEQL 248
>ref|NP_084021.2| TBC1 domain family member 9B [Mus musculus].
Length = 1246
Score = 58.5 bits (140), Expect = 7e-09
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Frame = +2
Query: 422 YKQRNEDFRKLFSKLPEAERLIVDYSCALQR-EILLQGRLYLSENWICFYSNIFRWETTI 598
+K+ RK F +PE E+L+ YSC + + QG LYL+ N +CFYS + E ++
Sbjct: 137 FKEAELKMRKQFG-MPEGEKLVNYYSCNFWKGRVPRQGWLYLTVNHLCFYSFLLGKEVSL 195
Query: 599 SIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSF 709
+Q +VT L+K T L P +I++ T ++ FF+ F
Sbjct: 196 VVQWVDVTRLEKNATL-LFPESIRVDTRDQELFFSMF 231
Score = 49.3 bits (116), Expect = 4e-06
Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Frame = +2
Query: 425 KQRNEDFRKLFSKLPEAERLIVDYSCALQ---REILLQGRLYLSENWICFYSNIFRWETT 595
+ +NE +R F +LP+ ERL C L ++ + G++++S N+ICF S
Sbjct: 284 RAKNECYRATF-RLPKDERLDGHTGCTLWTPFNKLHIPGQMFISNNYICFASK-EEDACR 341
Query: 596 ISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLL 736
+ I L+EVT ++K ++ ++P+ + I T+S+ F + +DR FL+
Sbjct: 342 LIIPLREVTIVEKADSSSVLPSPLSISTKSKMTFLFA-NLKDRDFLV 387
>ref|NP_061245.3| TBC1 domain family member 8 [Mus musculus].
Length = 1134
Score = 49.7 bits (117), Expect = 3e-06
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Frame = +2
Query: 425 KQRNEDFRKLFSKL------PEAERLIVDYSCALQR-EILLQGRLYLSENWICFYSNIFR 583
++ E FR+ K PEAE+L+ YSC + + QG LYLS N +CFYS
Sbjct: 134 EEEPEKFREALVKFEARFNFPEAEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLG 193
Query: 584 WETTISIQLKEVTCLKKEKTAKL-IPNAIQICTESEKHFFTSFGARDRCFLLIFRL 748
E + I ++ K E+T+ + + + I+I T++++ F++F D F ++ +L
Sbjct: 194 KELKLVIPWVDIQ--KLERTSNVFLTDTIRITTQNKERDFSTFLNLDEVFKIMEQL 247
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,828,051
Number of extensions: 696847
Number of successful extensions: 3269
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3214
Number of HSP's successfully gapped: 10
Length of query: 322
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 221
Effective length of database: 12,583,923
Effective search space: 2781046983
Effective search space used: 2781046983
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009551
(966 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065946.2| GRAM domain-containing protein 1A isoform 1 [Ho... 384 e-107
Alignment gi|NP_001129671.1| GRAM domain-containing protein 1A isoform 2 ... 362 e-100
Alignment gi|NP_065767.1| GRAM domain-containing protein 1B [Homo sapiens]. 289 2e-78
Alignment gi|NP_060047.3| GRAM domain-containing protein 1C isoform 1 [Ho... 218 5e-57
Alignment gi|NP_001139791.1| GRAM domain-containing protein 3 isoform 1 [... 103 3e-22
Alignment gi|NP_001139794.1| GRAM domain-containing protein 3 isoform 5 [... 103 3e-22
Alignment gi|NP_001139793.1| GRAM domain-containing protein 3 isoform 4 [... 103 3e-22
Alignment gi|NP_076416.2| GRAM domain-containing protein 3 isoform 2 [Hom... 103 3e-22
Alignment gi|NP_001139792.1| GRAM domain-containing protein 3 isoform 3 [... 100 2e-21
Alignment gi|NP_001012660.1| GRAM domain-containing protein 2 [Homo sapie... 92 7e-19
>ref|NP_065946.2| GRAM domain-containing protein 1A isoform 1 [Homo sapiens].
Length = 724
Score = 384 bits (985), Expect = e-107
Identities = 185/191 (96%), Positives = 189/191 (98%)
Frame = +2
Query: 326 VPGTPSTQSLGSRNFIRNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA 505
VPGTPSTQSLGSRNFIRNSKKMQSWY+MLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA
Sbjct: 54 VPGTPSTQSLGSRNFIRNSKKMQSWYSMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA 113
Query: 506 LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTES 685
LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTES
Sbjct: 114 LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTES 173
Query: 686 EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELCLTSEDEDYVCP 865
EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSEL LTSEDEDYV P
Sbjct: 174 EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELGLTSEDEDYVSP 233
Query: 866 LQLNGLGSPRK 898
LQLNGLG+P++
Sbjct: 234 LQLNGLGTPKE 244
Score = 48.9 bits (115), Expect = 7e-06
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = +1
Query: 862 PLATEWSREPQEVGDVIALSDITPSGAADRSREPS 966
PL P+EVGDVIALSDIT SGAADRS+EPS
Sbjct: 233 PLQLNGLGTPKEVGDVIALSDITSSGAADRSQEPS 267
>ref|NP_001129671.1| GRAM domain-containing protein 1A isoform 2 [Homo sapiens].
Length = 713
Score = 362 bits (929), Expect = e-100
Identities = 179/191 (93%), Positives = 182/191 (95%)
Frame = +2
Query: 326 VPGTPSTQSLGSRNFIRNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA 505
VPGTPSTQSLGSRNFIRNSK MLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA
Sbjct: 54 VPGTPSTQSLGSRNFIRNSK-------MLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCA 106
Query: 506 LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTES 685
LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTES
Sbjct: 107 LQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTES 166
Query: 686 EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELCLTSEDEDYVCP 865
EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSEL LTSEDEDYV P
Sbjct: 167 EKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELGLTSEDEDYVSP 226
Query: 866 LQLNGLGSPRK 898
LQLNGLG+P++
Sbjct: 227 LQLNGLGTPKE 237
Score = 48.9 bits (115), Expect = 7e-06
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = +1
Query: 862 PLATEWSREPQEVGDVIALSDITPSGAADRSREPS 966
PL P+EVGDVIALSDIT SGAADRS+EPS
Sbjct: 226 PLQLNGLGTPKEVGDVIALSDITSSGAADRSQEPS 260
>ref|NP_065767.1| GRAM domain-containing protein 1B [Homo sapiens].
Length = 738
Score = 289 bits (740), Expect = 2e-78
Identities = 135/185 (72%), Positives = 158/185 (85%), Gaps = 6/185 (3%)
Frame = +2
Query: 329 PGTP------STQSLGSRNFIRNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIV 490
P TP S S R+ +NSKK QSWYN+LSPTYKQRNEDFRKLF +LP+ ERLIV
Sbjct: 54 PSTPEQGVQRSCSSQSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIV 113
Query: 491 DYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQ 670
DYSCALQR+ILLQGRLYLSENWICFYSNIFRWET ++++LK++ + KEKTA+LIPNAIQ
Sbjct: 114 DYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQ 173
Query: 671 ICTESEKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCYGSELCLTSEDE 850
+CT+SEKHFFTSFGARDR ++++FRLWQNALLEK L P+ELWH VHQCYG+EL LTS+DE
Sbjct: 174 VCTDSEKHFFTSFGARDRTYMMMFRLWQNALLEKPLCPKELWHFVHQCYGNELGLTSDDE 233
Query: 851 DYVCP 865
DYV P
Sbjct: 234 DYVPP 238
>ref|NP_060047.3| GRAM domain-containing protein 1C isoform 1 [Homo sapiens].
Length = 662
Score = 218 bits (556), Expect = 5e-57
Identities = 103/145 (71%), Positives = 123/145 (84%)
Frame = +2
Query: 413 SPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWET 592
S TYK RNE++R+ F+ LP+ ERLI DY+CALQR+ILLQGRLYLSENW+CFYSNIFRWET
Sbjct: 61 SSTYKDRNEEYRRQFTHLPDTERLIADYACALQRDILLQGRLYLSENWLCFYSNIFRWET 120
Query: 593 TISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRLWQNALLEK 772
TISI LK +T + KEKTA+LIPNAIQI TESEK FFTSFGARDR +L IFRLWQN LL+K
Sbjct: 121 TISIALKNITFMTKEKTARLIPNAIQIVTESEKFFFTSFGARDRSYLSIFRLWQNVLLDK 180
Query: 773 TLSPRELWHLVHQCYGSELCLTSED 847
+L+ +E W L+ Q YG+EL L +E+
Sbjct: 181 SLTRQEFWQLLQQNYGTELGLNAEE 205
>ref|NP_001139791.1| GRAM domain-containing protein 3 isoform 1 [Homo sapiens].
Length = 447
Score = 103 bits (256), Expect = 3e-22
Identities = 54/122 (44%), Positives = 77/122 (63%)
Frame = +2
Query: 374 RNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSEN 553
+N K + + S YK N F KLF +P E L ++CALQ+EIL QG+L++SEN
Sbjct: 105 KNDPKTERKKSSSSSQYKA-NMHFHKLFLSVPTEEPLKQSFTCALQKEILYQGKLFVSEN 163
Query: 554 WICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFL 733
WICF+S +F +T ISI VT +KK KTA L+PNA+ I T ++++ F S +RD +
Sbjct: 164 WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 223
Query: 734 LI 739
L+
Sbjct: 224 LL 225
>ref|NP_001139794.1| GRAM domain-containing protein 3 isoform 5 [Homo sapiens].
Length = 416
Score = 103 bits (256), Expect = 3e-22
Identities = 54/122 (44%), Positives = 77/122 (63%)
Frame = +2
Query: 374 RNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSEN 553
+N K + + S YK N F KLF +P E L ++CALQ+EIL QG+L++SEN
Sbjct: 74 KNDPKTERKKSSSSSQYKA-NMHFHKLFLSVPTEEPLKQSFTCALQKEILYQGKLFVSEN 132
Query: 554 WICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFL 733
WICF+S +F +T ISI VT +KK KTA L+PNA+ I T ++++ F S +RD +
Sbjct: 133 WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 192
Query: 734 LI 739
L+
Sbjct: 193 LL 194
>ref|NP_001139793.1| GRAM domain-containing protein 3 isoform 4 [Homo sapiens].
Length = 440
Score = 103 bits (256), Expect = 3e-22
Identities = 54/122 (44%), Positives = 77/122 (63%)
Frame = +2
Query: 374 RNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSEN 553
+N K + + S YK N F KLF +P E L ++CALQ+EIL QG+L++SEN
Sbjct: 98 KNDPKTERKKSSSSSQYKA-NMHFHKLFLSVPTEEPLKQSFTCALQKEILYQGKLFVSEN 156
Query: 554 WICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFL 733
WICF+S +F +T ISI VT +KK KTA L+PNA+ I T ++++ F S +RD +
Sbjct: 157 WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 216
Query: 734 LI 739
L+
Sbjct: 217 LL 218
>ref|NP_076416.2| GRAM domain-containing protein 3 isoform 2 [Homo sapiens].
Length = 432
Score = 103 bits (256), Expect = 3e-22
Identities = 54/122 (44%), Positives = 77/122 (63%)
Frame = +2
Query: 374 RNSKKMQSWYNMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSEN 553
+N K + + S YK N F KLF +P E L ++CALQ+EIL QG+L++SEN
Sbjct: 90 KNDPKTERKKSSSSSQYKA-NMHFHKLFLSVPTEEPLKQSFTCALQKEILYQGKLFVSEN 148
Query: 554 WICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFL 733
WICF+S +F +T ISI VT +KK KTA L+PNA+ I T ++++ F S +RD +
Sbjct: 149 WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 208
Query: 734 LI 739
L+
Sbjct: 209 LL 210
>ref|NP_001139792.1| GRAM domain-containing protein 3 isoform 3 [Homo sapiens].
Length = 328
Score = 100 bits (250), Expect = 2e-21
Identities = 49/102 (48%), Positives = 69/102 (67%)
Frame = +2
Query: 434 NEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQLK 613
N F KLF +P E L ++CALQ+EIL QG+L++SENWICF+S +F +T ISI
Sbjct: 5 NMHFHKLFLSVPTEEPLKQSFTCALQKEILYQGKLFVSENWICFHSKVFGKDTKISIPAF 64
Query: 614 EVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLI 739
VT +KK KTA L+PNA+ I T ++++ F S +RD + L+
Sbjct: 65 SVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLL 106
>ref|NP_001012660.1| GRAM domain-containing protein 2 [Homo sapiens].
Length = 354
Score = 92.0 bits (227), Expect = 7e-19
Identities = 50/127 (39%), Positives = 79/127 (62%), Gaps = 3/127 (2%)
Frame = +2
Query: 419 TYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTI 598
T + N+ + KLF +P E ++ SCALQR+ LLQGRLY+S NW+CF++++F + +
Sbjct: 66 TLNKYNQQYHKLFKDVPLEEVVLKVCSCALQRDFLLQGRLYISPNWLCFHASLFGKDIKV 125
Query: 599 SIQLKEVTCLKKEKTAKLIPNAIQICTE-SEKHFFTSFGARDRCFLLIFRLWQN--ALLE 769
I + V +KK K A+L+PN + I T S+K+ F S +RD + L+ R+ + +
Sbjct: 126 VIPVVSVQMIKKHKMARLLPNGLAITTNTSQKYIFVSLLSRDSVYDLLRRVCTHLQPSSK 185
Query: 770 KTLSPRE 790
K+LS RE
Sbjct: 186 KSLSVRE 192
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,920,027
Number of extensions: 846561
Number of successful extensions: 4074
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3992
Number of HSP's successfully gapped: 19
Length of query: 322
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 219
Effective length of database: 14,901,872
Effective search space: 3263509968
Effective search space used: 3263509968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009551
(966 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 418 e-114
gb|GL894750.2| Sus scrofa unplaced genomic scaffold ChrUScaf2634 84 2e-13
Sscrofa_Chr09 84 2e-13
>Sscrofa_Chr06
|| Length = 157765593
Score = 418 bits (211), Expect = e-114
Identities = 211/211 (100%)
Strand = Plus / Plus
Query: 175 caccactccccactccggccggagcacgccaagcagctccccgtctctccgtaagcggct 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40005155 caccactccccactccggccggagcacgccaagcagctccccgtctctccgtaagcggct 40005214
Query: 235 ccagctcttgcccccaagccgacccccgcctgagccagaaccaagcaccatggtggagaa 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40005215 ccagctcttgcccccaagccgacccccgcctgagccagaaccaagcaccatggtggagaa 40005274
Query: 295 ggggtcagacagctcctcagagaagggcggggtgcccgggacgcccagcacccagagcct 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40005275 ggggtcagacagctcctcagagaagggcggggtgcccgggacgcccagcacccagagcct 40005334
Query: 355 gggcagccggaatttcatccgcaacagcaag 385
|||||||||||||||||||||||||||||||
Sbjct: 40005335 gggcagccggaatttcatccgcaacagcaag 40005365
Score = 214 bits (108), Expect = 7e-53
Identities = 114/116 (98%)
Strand = Plus / Plus
Query: 771 agacgctgagtccccgcgagctctggcacctggtgcatcagtgctacggctcagagctgt 830
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40009847 agacgctgagtccccgcgagctctggcacctggtgcatcagtgctacggctcagagctgg 40009906
Query: 831 gccttaccagtgaggatgaggactatgtctgccccttgcaactgaatggtctaggg 886
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 40009907 gccttaccagtgaggatgaggactatgtctgccccttgcagctgaatggtctaggg 40009962
Score = 208 bits (105), Expect = 4e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 491 gattactcctgtgccttgcagcgcgagatcctcctccagggccgcctctatctctccgag 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40006111 gattactcctgtgccttgcagcgcgagatcctcctccagggccgcctctatctctccgag 40006170
Query: 551 aactggatctgcttctacagcaacatcttccgctgggagaccaca 595
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40006171 aactggatctgcttctacagcaacatcttccgctgggagaccaca 40006215
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 596 atttccatccagttgaaggaagtgacgtgtctgaagaaggaaaagacggccaagctgatc 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40006315 atttccatccagttgaaggaagtgacgtgtctgaagaaggaaaagacggccaagctgatc 40006374
Query: 656 cccaacgccatccagatctgcacagagagcgagaag 691
||||||||||||||||||||||||||||||||||||
Sbjct: 40006375 cccaacgccatccagatctgcacagagagcgagaag 40006410
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 690 agcacttcttcacctccttcggggcccgagaccgctgcttcctcctcatcttccgcctct 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40007162 agcacttcttcacctccttcggggcccgagaccgctgcttcctcctcatcttccgcctct 40007221
Query: 750 ggcagaacgcgctacttgaaaag 772
|||||||||||||||||||||||
Sbjct: 40007222 ggcagaacgcgctacttgaaaag 40007244
Score = 161 bits (81), Expect = 9e-37
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 407 atgctgagccccacatacaaacagcggaacgaggacttccggaaactgttcagcaaactc 466
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40005900 atgctgagccccacgtacaaacagcggaacgaggacttccggaaactgttcagcaaactc 40005959
Query: 467 cctgaggccgaacgcctcattgtgg 491
|||||||||||||||||||||||||
Sbjct: 40005960 cctgaggccgaacgcctcattgtgg 40005984
Score = 133 bits (67), Expect = 2e-28
Identities = 80/83 (96%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 885 ggagcccca-ggaagtgggagatgtaatcgccctgagcgacatcaccccttcgggggcag 943
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40010120 ggagccccaaggaagtgggagatgtaatcgccctgagcgacatcaccccttcgggggcag 40010179
Query: 944 ctgaccgcagccgggaaccaagc 966
|||||||||||| ||| ||||||
Sbjct: 40010180 ctgaccgcagccaggagccaagc 40010202
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 62 cgaccagggcgaggcgcctgccccgcggggac 93
||||||||||||||||||||||||||||||||
Sbjct: 39999230 cgaccagggcgaggcgcctgccccgcggggac 39999261
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 143 ctgggcgcccgccgcgccgcatccatgttcga 174
||||||||||||||||||||||||||||||||
Sbjct: 39999311 ctgggcgcccgccgcgccgcatccatgttcga 39999342
>gb|GL894750.2| Sus scrofa unplaced genomic scaffold ChrUScaf2634
Length = 282699
Score = 83.8 bits (42), Expect = 2e-13
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 527 cagggccgcctctatctctccgagaactggatctgcttctacagcaacatcttccgctgg 586
|||||||| ||||| ||||| || || |||||||||||||||||||||||||||||||||
Sbjct: 220559 cagggccgactctacctctctgaaaattggatctgcttctacagcaacatcttccgctgg 220618
Query: 587 ga 588
||
Sbjct: 220619 ga 220620
>Sscrofa_Chr09
|| Length = 153670197
Score = 83.8 bits (42), Expect = 2e-13
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 527 cagggccgcctctatctctccgagaactggatctgcttctacagcaacatcttccgctgg 586
|||||||| ||||| ||||| || || |||||||||||||||||||||||||||||||||
Sbjct: 55766908 cagggccgactctacctctctgaaaattggatctgcttctacagcaacatcttccgctgg 55766967
Query: 587 ga 588
||
Sbjct: 55766968 ga 55766969
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,945,002
Number of extensions: 101
Number of successful extensions: 101
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 11
Length of query: 966
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 945
Effective length of database: 2,808,413,156
Effective search space: 2653950432420
Effective search space used: 2653950432420
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)