Animal-Genome cDNA 20110601C-009556


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009556
         (974 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001092535.1| hypothetical protein LOC534664 [Bos taurus].      287   9e-78

>ref|NP_001092535.1| hypothetical protein LOC534664 [Bos taurus].
          Length = 453

 Score =  287 bits (735), Expect = 9e-78
 Identities = 145/197 (73%), Positives = 154/197 (78%), Gaps = 1/197 (0%)
 Frame = +2

Query: 50  MAEAAELVWLRGPAFGCKALRVTSTLCSVRDFIHRHCQDQVVPLEYFFVKCNGLLVNASD 229
           MAE A LVWLRGP FGCKA+   S  CS+RDFI RHC+DQVVP+E FFVKCNG LVN SD
Sbjct: 1   MAETAALVWLRGPGFGCKAVWCGSAPCSIRDFIRRHCEDQVVPVECFFVKCNGSLVNTSD 60

Query: 230 TVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE 409
           TVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE
Sbjct: 61  TVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE 120

Query: 410 WVXXXXXXXXXXXXXXXXXXQRKLAEPRHCFTSPDYQQQCHEMAERLEDSVLKGENEVSS 589
           WV                  QRKL EPRHCF+SPDYQQQCHEMAERLEDSVLKG    SS
Sbjct: 121 WVKQQAEREAEKEQKRLERLQRKLVEPRHCFSSPDYQQQCHEMAERLEDSVLKGMQAASS 180

Query: 590 -VPSASIPEASCSPQRA 637
            + SA I E+   P ++
Sbjct: 181 KMVSAEIGESRKRPNKS 197


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,228,184
Number of extensions: 948529
Number of successful extensions: 3326
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3322
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 222
Effective length of database: 14,306,398
Effective search space: 3176020356
Effective search space used: 3176020356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009556
         (974 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_537233.2| PREDICTED: similar to CG5986-PA [Canis familiar...   262   3e-70

>ref|XP_537233.2| PREDICTED: similar to CG5986-PA [Canis familiaris].
          Length = 453

 Score =  262 bits (670), Expect = 3e-70
 Identities = 135/197 (68%), Positives = 148/197 (75%), Gaps = 1/197 (0%)
 Frame = +2

Query: 50  MAEAAELVWLRGPAFGCKALRVTSTLCSVRDFIHRHCQDQVVPLEYFFVKCNGLLVNASD 229
           MAEAA LVW+RGP FGCKA+R  S   S ++ + RHC+DQ VP+E FFVKCNG LV+A+D
Sbjct: 1   MAEAAPLVWVRGPGFGCKAVRCASARWSAQEVVRRHCRDQAVPVECFFVKCNGSLVDAND 60

Query: 230 TVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE 409
            VQHGAVYSLEPRL GGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE
Sbjct: 61  RVQHGAVYSLEPRLFGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE 120

Query: 410 WVXXXXXXXXXXXXXXXXXXQRKLAEPRHCFTSPDYQQQCHEMAERLEDSVLKGENEVSS 589
           WV                  QRKLAEPR CFTS  YQQQCHEMAERLEDSVLKG    SS
Sbjct: 121 WVKQQAEREAEKEQKRLERLQRKLAEPRPCFTSRAYQQQCHEMAERLEDSVLKGMQAASS 180

Query: 590 -VPSASIPEASCSPQRA 637
            + SA   E+   P ++
Sbjct: 181 KMVSAETGESRKRPNKS 197


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,378,996
Number of extensions: 918052
Number of successful extensions: 3205
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3203
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 221
Effective length of database: 15,440,896
Effective search space: 3412438016
Effective search space used: 3412438016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009556
         (974 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003130591.1| PREDICTED: UPF0667 protein C1orf55-like [Sus...   322   2e-88

>ref|XP_003130591.1| PREDICTED: UPF0667 protein C1orf55-like [Sus scrofa].
          Length = 455

 Score =  322 bits (825), Expect = 2e-88
 Identities = 164/197 (83%), Positives = 166/197 (84%), Gaps = 1/197 (0%)
 Frame = +2

Query: 50  MAEAAELVWLRGPAFGCKALRVTSTLCSVRDFIHRHCQDQVVPLEYFFVKCNGLLVNASD 229
           MAEAAELVWLRGPAFGCKALRVTSTLCSVRDFIHRHCQDQVVPLEYFFVKCNGLLVNASD
Sbjct: 1   MAEAAELVWLRGPAFGCKALRVTSTLCSVRDFIHRHCQDQVVPLEYFFVKCNGLLVNASD 60

Query: 230 TVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE 409
           TVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE
Sbjct: 61  TVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE 120

Query: 410 WVXXXXXXXXXXXXXXXXXXQRKLAEPRHCFTSPDYQQQCHEMAERLEDSVLKGENEVSS 589
           WV                  QRKLAEPRHCFTSPDYQQQCHEMAERLEDSVLKG    SS
Sbjct: 121 WVKQQAEREAEKEQKRLERLQRKLAEPRHCFTSPDYQQQCHEMAERLEDSVLKGMQAASS 180

Query: 590 -VPSASIPEASCSPQRA 637
            V SA I E    P ++
Sbjct: 181 KVVSAEIGEHRKRPYKS 197


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,185,265
Number of extensions: 688631
Number of successful extensions: 2092
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2089
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,879,129
Effective search space: 1997804025
Effective search space used: 1997804025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009556
         (974 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_666055.1| hypothetical protein LOC208768 [Mus musculus].       267   8e-72

>ref|NP_666055.1| hypothetical protein LOC208768 [Mus musculus].
          Length = 448

 Score =  267 bits (683), Expect = 8e-72
 Identities = 138/197 (70%), Positives = 148/197 (75%), Gaps = 1/197 (0%)
 Frame = +2

Query: 50  MAEAAELVWLRGPAFGCKALRVTSTLCSVRDFIHRHCQDQVVPLEYFFVKCNGLLVNASD 229
           MAEAA + W+RGP    KAL   S  CSVRD I+RHCQ+Q VP+E FFV CNG+LVNA D
Sbjct: 1   MAEAAVVAWVRGPGTVWKALPCASVGCSVRDVIYRHCQEQEVPVECFFVTCNGVLVNAGD 60

Query: 230 TVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE 409
            VQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE
Sbjct: 61  KVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE 120

Query: 410 WVXXXXXXXXXXXXXXXXXXQRKLAEPRHCFTSPDYQQQCHEMAERLEDSVLKGENEVSS 589
           WV                  QRKLAEP HCFTSPDYQ+QCHEMAERLEDSVLKG    SS
Sbjct: 121 WVKQQAEREAEKEQRRLERLQRKLAEPAHCFTSPDYQRQCHEMAERLEDSVLKGMQAASS 180

Query: 590 -VPSASIPEASCSPQRA 637
            + SA I E    P ++
Sbjct: 181 KMVSAEITETRKRPNKS 197


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,402,393
Number of extensions: 762146
Number of successful extensions: 2546
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2544
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 222
Effective length of database: 12,553,887
Effective search space: 2786962914
Effective search space used: 2786962914
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009556
         (974 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_689821.3| hypothetical protein LOC163859 [Homo sapiens].       288   7e-78

>ref|NP_689821.3| hypothetical protein LOC163859 [Homo sapiens].
          Length = 451

 Score =  288 bits (736), Expect = 7e-78
 Identities = 144/189 (76%), Positives = 151/189 (79%), Gaps = 1/189 (0%)
 Frame = +2

Query: 50  MAEAAELVWLRGPAFGCKALRVTSTLCSVRDFIHRHCQDQVVPLEYFFVKCNGLLVNASD 229
           MAEAA LVW+RGP FGCKA+R  S  C+VRDFIHRHCQDQ VP+E FFVKCNG L+N SD
Sbjct: 1   MAEAAALVWIRGPGFGCKAVRCASGRCTVRDFIHRHCQDQNVPVENFFVKCNGALINTSD 60

Query: 230 TVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE 409
           TVQHGAVYSLEPRL GGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE
Sbjct: 61  TVQHGAVYSLEPRLCGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE 120

Query: 410 WVXXXXXXXXXXXXXXXXXXQRKLAEPRHCFTSPDYQQQCHEMAERLEDSVLKGENEVSS 589
           WV                  QRKL EP+HCFTSPDYQQQCHEMAERLEDSVLKG    SS
Sbjct: 121 WVKQQAEREAEKEQKRLERLQRKLVEPKHCFTSPDYQQQCHEMAERLEDSVLKGMQAASS 180

Query: 590 -VPSASIPE 613
            + SA I E
Sbjct: 181 KMVSAEISE 189


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,758,129
Number of extensions: 901052
Number of successful extensions: 3240
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3238
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 221
Effective length of database: 14,901,872
Effective search space: 3293313712
Effective search space used: 3293313712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009556
         (974 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr10                                                         987   0.0  

>Sscrofa_Chr10 
||          Length = 79102373

 Score =  987 bits (498), Expect = 0.0
 Identities = 512/514 (99%), Gaps = 2/514 (0%)
 Strand = Plus / Plus

                                                                            
Query: 400      gatggctgaatgggtaaaacaacaagctgagcgagaagctgaaaaagagcagaagcgcct 459
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15898756 gatggctgaatgggtaaaacaacaagctgagcgagaagctgaaaaagagcagaagcgcct 15898815

                                                                            
Query: 460      ggaacggctgcagcggaagctcgcagagcccaggcactgcttcaccagccccgactacca 519
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15898816 ggaacggctgcagcggaagctcgcagagcccaggcactgcttcaccagccccgactacca 15898875

                                                                            
Query: 520      gcagcagtgccatgagatggccgagcgcctggaggattctgtcctcaaaggtgagaatga 579
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15898876 gcagcagtgccatgagatggccgagcgcctggaggattctgtcctcaaaggtgagaatga 15898935

                                                                            
Query: 580      ggtgtcctcagttccatcggccagcatccctgaagccagctgttccccacaaagggcagt 639
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15898936 ggtgtcctcagttccatcggccagcatccctgaagccagctgttccccacaaagggcagt 15898995

                                                                            
Query: 640      atttaagcttctttggtttacagattcctgagaatctggtgaaagctgtggcatttctca 699
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15898996 atttaagcttctttggtttacagattcctgagaatctggtgaaagctgtggcatttctca 15899055

                                                                            
Query: 700      cttcagtaatgaacatagtgtatcttacaacccaggggagagacccacatactcatacaa 759
                |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 15899056 cttcagtaatgaacatagtgtatc-tac-acccaggggagagacccacatactcatacaa 15899113

                                                                            
Query: 760      catttgacacacttgacccctgaactctttgggcccatgggccccaggtaagaatacttt 819
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15899114 catttgacacacttgacccctgaactctttgggcccatgggccccaggtaagaatacttt 15899173

                                                                            
Query: 820      ctgtgcttggtggggagaacctaagtcttcaggaggtgcctagacctcaacatatctgct 879
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15899174 ctgtgcttggtggggagaacctaagtcttcaggaggtgcctagacctcaacatatctgct 15899233

                                                  
Query: 880      tctggttttaggtcacttttatttatttattttt 913
                ||||||||||||||||||||||||||||||||||
Sbjct: 15899234 tctggttttaggtcacttttatttatttattttt 15899267



 Score =  319 bits (161), Expect = 2e-84
 Identities = 161/161 (100%)
 Strand = Plus / Plus

                                                                            
Query: 11       ttgccttctgggaatctcgaggttcagtggctgggtaaaatggcggaagctgcggagctg 70
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15889684 ttgccttctgggaatctcgaggttcagtggctgggtaaaatggcggaagctgcggagctg 15889743

                                                                            
Query: 71       gtgtggcttcgtggccctgccttcgggtgcaaggcgttgcgcgttacctcgaccctgtgc 130
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15889744 gtgtggcttcgtggccctgccttcgggtgcaaggcgttgcgcgttacctcgaccctgtgc 15889803

                                                         
Query: 131      tccgtacgggattttatccaccggcactgccaagatcaggt 171
                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 15889804 tccgtacgggattttatccaccggcactgccaagatcaggt 15889844



 Score =  242 bits (122), Expect = 3e-61
 Identities = 122/122 (100%)
 Strand = Plus / Plus

                                                                            
Query: 168      aggttgttccattggaatacttctttgtgaaatgcaacggattactcgttaatgccagtg 227
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15895866 aggttgttccattggaatacttctttgtgaaatgcaacggattactcgttaatgccagtg 15895925

                                                                            
Query: 228      acacagtgcagcatggagctgtttatagtttggagcccagacttcgtggtggaaaaggag 287
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15895926 acacagtgcagcatggagctgtttatagtttggagcccagacttcgtggtggaaaaggag 15895985

                  
Query: 288      gt 289
                ||
Sbjct: 15895986 gt 15895987



 Score =  220 bits (111), Expect = 1e-54
 Identities = 114/115 (99%)
 Strand = Plus / Plus

                                                                            
Query: 286      aggttttggctctatgctccgagcacttggtgctcagattgagaagacaaccaaccgaga 345
                |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 15897935 aggttttggctctatgcttcgagcacttggtgctcagattgagaagacaaccaaccgaga 15897994

                                                                       
Query: 346      agcttgccgggatctcagtggaaggagactccgagatgtcaatcatgaaaaagcg 400
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15897995 agcttgccgggatctcagtggaaggagactccgagatgtcaatcatgaaaaagcg 15898049


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,601,507
Number of extensions: 11294
Number of successful extensions: 11294
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11293
Number of HSP's successfully gapped: 4
Length of query: 974
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 953
Effective length of database: 2,808,413,156
Effective search space: 2676417737668
Effective search space used: 2676417737668
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)