Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009589
(959 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002694806.1| PREDICTED: kelch domain containing 4 isoform... 446 e-125
Alignment gi|XP_002694805.1| PREDICTED: kelch domain containing 4 isoform... 446 e-125
Alignment gi|XP_002684473.1| PREDICTED: kelch domain containing 4 [Bos ta... 446 e-125
Alignment gi|NP_001068695.1| kelch domain-containing protein 10 [Bos taur... 61 2e-09
Alignment gi|XP_002695193.1| PREDICTED: Multiple epidermal growth factor-... 59 8e-09
Alignment gi|XP_002701932.1| PREDICTED: multiple EGF-like-domains 8 [Bos ... 58 1e-08
Alignment gi|XP_002707954.1| PREDICTED: Host cell factor (predicted)-like... 54 3e-07
Alignment gi|XP_590515.2| PREDICTED: Host cell factor (predicted)-like [B... 54 3e-07
Alignment gi|NP_001030476.1| rab9 effector protein with kelch motifs [Bos... 52 6e-07
>ref|XP_002694806.1| PREDICTED: kelch domain containing 4 isoform 2 [Bos taurus].
Length = 597
Score = 446 bits (1146), Expect = e-125
Identities = 206/241 (85%), Positives = 219/241 (90%)
Frame = +2
Query: 236 DLEALIAHFQTLDARRTQVVETPCSPPSPRLNASLSAHPEKDELILFGGEYFNGQKTLLY 415
DLEALIAHFQTLDAR+TQVVETPCSPPSPRLNASLS HPEKDELILFGGEYFNGQKT LY
Sbjct: 35 DLEALIAHFQTLDARKTQVVETPCSPPSPRLNASLSTHPEKDELILFGGEYFNGQKTFLY 94
Query: 416 NELYTYSIRKDAWTKVDIPNPPPRRCAHQAVAVPQGGGQLWIFGGEFASPDGEQFYHYRD 595
NELY Y+IRKD+WTKV+IPNPPPRRCAHQAV VPQGGGQLWIFGGEFASPDGEQFYHY+D
Sbjct: 95 NELYVYNIRKDSWTKVEIPNPPPRRCAHQAVVVPQGGGQLWIFGGEFASPDGEQFYHYKD 154
Query: 596 LWVLHLATKTWEQVXXXXXXXXXXXHRMVAWKRQLILFGGFHESTRDYVYYNDVYTFDLD 775
LWVLHLATKTWEQV HRMVAWKRQLILFGGFHESTRDY+YYNDVY F+LD
Sbjct: 155 LWVLHLATKTWEQVRSPGGPSGRSGHRMVAWKRQLILFGGFHESTRDYIYYNDVYAFNLD 214
Query: 776 TSTWTKLSLSGTGPTPRSGCQMSVTPQGSIVIYGGYSKQRVRKDVGRGTQHGDMFLLNPE 955
T TW+KLS SGTGPTPRSGCQM++TPQG+I+IYGGYSKQRVRKDV RGTQH DMFLL E
Sbjct: 215 TFTWSKLSPSGTGPTPRSGCQMTITPQGNIIIYGGYSKQRVRKDVDRGTQHSDMFLLKAE 274
Query: 956 E 958
+
Sbjct: 275 D 275
>ref|XP_002694805.1| PREDICTED: kelch domain containing 4 isoform 1 [Bos taurus].
Length = 595
Score = 446 bits (1146), Expect = e-125
Identities = 206/241 (85%), Positives = 219/241 (90%)
Frame = +2
Query: 236 DLEALIAHFQTLDARRTQVVETPCSPPSPRLNASLSAHPEKDELILFGGEYFNGQKTLLY 415
DLEALIAHFQTLDAR+TQVVETPCSPPSPRLNASLS HPEKDELILFGGEYFNGQKT LY
Sbjct: 35 DLEALIAHFQTLDARKTQVVETPCSPPSPRLNASLSTHPEKDELILFGGEYFNGQKTFLY 94
Query: 416 NELYTYSIRKDAWTKVDIPNPPPRRCAHQAVAVPQGGGQLWIFGGEFASPDGEQFYHYRD 595
NELY Y+IRKD+WTKV+IPNPPPRRCAHQAV VPQGGGQLWIFGGEFASPDGEQFYHY+D
Sbjct: 95 NELYVYNIRKDSWTKVEIPNPPPRRCAHQAVVVPQGGGQLWIFGGEFASPDGEQFYHYKD 154
Query: 596 LWVLHLATKTWEQVXXXXXXXXXXXHRMVAWKRQLILFGGFHESTRDYVYYNDVYTFDLD 775
LWVLHLATKTWEQV HRMVAWKRQLILFGGFHESTRDY+YYNDVY F+LD
Sbjct: 155 LWVLHLATKTWEQVRSPGGPSGRSGHRMVAWKRQLILFGGFHESTRDYIYYNDVYAFNLD 214
Query: 776 TSTWTKLSLSGTGPTPRSGCQMSVTPQGSIVIYGGYSKQRVRKDVGRGTQHGDMFLLNPE 955
T TW+KLS SGTGPTPRSGCQM++TPQG+I+IYGGYSKQRVRKDV RGTQH DMFLL E
Sbjct: 215 TFTWSKLSPSGTGPTPRSGCQMTITPQGNIIIYGGYSKQRVRKDVDRGTQHSDMFLLKAE 274
Query: 956 E 958
+
Sbjct: 275 D 275
>ref|XP_002684473.1| PREDICTED: kelch domain containing 4 [Bos taurus].
Length = 595
Score = 446 bits (1146), Expect = e-125
Identities = 206/241 (85%), Positives = 219/241 (90%)
Frame = +2
Query: 236 DLEALIAHFQTLDARRTQVVETPCSPPSPRLNASLSAHPEKDELILFGGEYFNGQKTLLY 415
DLEALIAHFQTLDAR+TQVVETPCSPPSPRLNASLS HPEKDELILFGGEYFNGQKT LY
Sbjct: 35 DLEALIAHFQTLDARKTQVVETPCSPPSPRLNASLSTHPEKDELILFGGEYFNGQKTFLY 94
Query: 416 NELYTYSIRKDAWTKVDIPNPPPRRCAHQAVAVPQGGGQLWIFGGEFASPDGEQFYHYRD 595
NELY Y+IRKD+WTKV+IPNPPPRRCAHQAV VPQGGGQLWIFGGEFASPDGEQFYHY+D
Sbjct: 95 NELYVYNIRKDSWTKVEIPNPPPRRCAHQAVVVPQGGGQLWIFGGEFASPDGEQFYHYKD 154
Query: 596 LWVLHLATKTWEQVXXXXXXXXXXXHRMVAWKRQLILFGGFHESTRDYVYYNDVYTFDLD 775
LWVLHLATKTWEQV HRMVAWKRQLILFGGFHESTRDY+YYNDVY F+LD
Sbjct: 155 LWVLHLATKTWEQVRSPGGPSGRSGHRMVAWKRQLILFGGFHESTRDYIYYNDVYAFNLD 214
Query: 776 TSTWTKLSLSGTGPTPRSGCQMSVTPQGSIVIYGGYSKQRVRKDVGRGTQHGDMFLLNPE 955
T TW+KLS SGTGPTPRSGCQM++TPQG+I+IYGGYSKQRVRKDV RGTQH DMFLL E
Sbjct: 215 TFTWSKLSPSGTGPTPRSGCQMTITPQGNIIIYGGYSKQRVRKDVDRGTQHSDMFLLKAE 274
Query: 956 E 958
+
Sbjct: 275 D 275
>ref|NP_001068695.1| kelch domain-containing protein 10 [Bos taurus].
Length = 442
Score = 60.8 bits (146), Expect = 2e-09
Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Frame = +2
Query: 476 PPPRRCAHQAVAVPQGGGQLWIFGG------EFASPDGEQFYHYRDLWVLHLATKTWEQV 637
PPP R H+ VA L++FGG E PD E + +R+LW H AT W Q+
Sbjct: 88 PPPARSGHRCVA---DNTNLYVFGGYNPDYDESGGPDNEDYPLFRELWRYHFATGVWHQM 144
Query: 638 XXXXXXXXXXXH-RMVAWKRQLILFGG----FHESTRDYVYYNDVYTFDLDTSTWTKLSL 802
+V L++FGG F ES NDV+ ++ W LS
Sbjct: 145 GTDGYMPRELASMSLVLHGNNLLVFGGTGIPFGESNG-----NDVHVCNVKYKRWALLSC 199
Query: 803 SGTGPTPRSGCQMSVTPQGSIVIYGG 880
G P+ G M++ GS+ ++GG
Sbjct: 200 RGKKPSRIYGQAMAII-NGSLYVFGG 224
>ref|XP_002695193.1| PREDICTED: Multiple epidermal growth factor-like domains protein
8-like [Bos taurus].
Length = 1397
Score = 58.5 bits (140), Expect = 8e-09
Identities = 53/183 (28%), Positives = 78/183 (42%), Gaps = 10/183 (5%)
Frame = +2
Query: 365 LILFGGEYFNGQKTLLYNELYTYSIRKDAWTKVDI------PNPPPRRCAHQAVAVPQGG 526
L +FGG G L LY YS+ + WT++ P P PR H A VP G
Sbjct: 522 LWMFGGL---GLPQGLLGNLYRYSVSERRWTQMLAGAEDGGPGPSPRSF-HSAAYVPAGR 577
Query: 527 GQLWIFGGEFASPDGEQFYHYRDLWVLHLATKTW--EQVXXXXXXXXXXXHRMVAWK-RQ 697
G +++ GG A RD WVL+L T W E+ H + A +
Sbjct: 578 GAMYLLGGLTAGGIA------RDFWVLNLTTLQWRQEKAPQTVELPAVAGHTLTARRGLS 631
Query: 698 LILFGGFHESTRDYVYYNDVYTFDLDTSTWTKLSLSGTGPTPRSG-CQMSVTPQGSIVIY 874
L+L GG+ + + + + + L T TW + SGT PT G + S+ ++
Sbjct: 632 LLLVGGY---SPENGFNQQLLEYQLATGTWVSGAQSGTPPTGLYGHSAVYHEATDSLYVF 688
Query: 875 GGY 883
GG+
Sbjct: 689 GGF 691
>ref|XP_002701932.1| PREDICTED: multiple EGF-like-domains 8 [Bos taurus].
Length = 2789
Score = 58.2 bits (139), Expect = 1e-08
Identities = 53/183 (28%), Positives = 78/183 (42%), Gaps = 10/183 (5%)
Frame = +2
Query: 365 LILFGGEYFNGQKTLLYNELYTYSIRKDAWTKVDI------PNPPPRRCAHQAVAVPQGG 526
L +FGG G L LY YS+ + WT++ P P PR H A VP G
Sbjct: 1457 LWMFGGL---GLPQGLLGNLYRYSVSERRWTQMLAGAEDGGPGPSPRSF-HAAAYVPAGR 1512
Query: 527 GQLWIFGGEFASPDGEQFYHYRDLWVLHLATKTW--EQVXXXXXXXXXXXHRMVAWK-RQ 697
G +++ GG A RD WVL+L T W E+ H + A +
Sbjct: 1513 GAMYLLGGLTAGGIA------RDFWVLNLTTLQWRQEKAPQTVELPAVAGHTLTARRGLS 1566
Query: 698 LILFGGFHESTRDYVYYNDVYTFDLDTSTWTKLSLSGTGPTPRSG-CQMSVTPQGSIVIY 874
L+L GG+ + + + + + L T TW + SGT PT G + S+ ++
Sbjct: 1567 LLLVGGY---SPENGFNQQLLEYQLATGTWVSGAQSGTPPTGLYGHSAVYHEATDSLYVF 1623
Query: 875 GGY 883
GG+
Sbjct: 1624 GGF 1626
>ref|XP_002707954.1| PREDICTED: Host cell factor (predicted)-like [Bos taurus].
Length = 1992
Score = 53.5 bits (127), Expect = 3e-07
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 16/189 (8%)
Frame = +2
Query: 365 LILFGGEYFNGQKTLLYNELYTYSIRKDAWTKVDIPNPP--PRRCAHQAVAVPQGGGQLW 538
L++FGG G+ + N+LY + W ++ P P C + G + +
Sbjct: 94 LLVFGGMVEYGKYS---NDLYELQASRWEWKRLKAKTPKNGPPPCPRLGHSFSLVGNKCY 150
Query: 539 IFGG---EFASPDGEQFYHYRDLWVLHL----ATKTWE-QVXXXXXXXXXXXHRMVAW-- 688
+FGG + P + DL++L L W+ + H V +
Sbjct: 151 LFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVVYTE 210
Query: 689 ----KRQLILFGGFHESTRDYVYYNDVYTFDLDTSTWTKLSLSGTGPTPRSGCQMSVTPQ 856
K +L+++GG D++T D++T TW K SLSG P PRS + T
Sbjct: 211 KDNKKSKLVIYGGMSGCR-----LGDLWTLDIETLTWNKPSLSGVAPLPRS-LHSATTIG 264
Query: 857 GSIVIYGGY 883
+ ++GG+
Sbjct: 265 NKMYVFGGW 273
>ref|XP_590515.2| PREDICTED: Host cell factor (predicted)-like [Bos taurus].
Length = 1992
Score = 53.5 bits (127), Expect = 3e-07
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 16/189 (8%)
Frame = +2
Query: 365 LILFGGEYFNGQKTLLYNELYTYSIRKDAWTKVDIPNPP--PRRCAHQAVAVPQGGGQLW 538
L++FGG G+ + N+LY + W ++ P P C + G + +
Sbjct: 94 LLVFGGMVEYGKYS---NDLYELQASRWEWKRLKAKTPKNGPPPCPRLGHSFSLVGNKCY 150
Query: 539 IFGG---EFASPDGEQFYHYRDLWVLHL----ATKTWE-QVXXXXXXXXXXXHRMVAW-- 688
+FGG + P + DL++L L W+ + H V +
Sbjct: 151 LFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVVYTE 210
Query: 689 ----KRQLILFGGFHESTRDYVYYNDVYTFDLDTSTWTKLSLSGTGPTPRSGCQMSVTPQ 856
K +L+++GG D++T D++T TW K SLSG P PRS + T
Sbjct: 211 KDNKKSKLVIYGGMSGCR-----LGDLWTLDIETLTWNKPSLSGVAPLPRS-LHSATTIG 264
Query: 857 GSIVIYGGY 883
+ ++GG+
Sbjct: 265 NKMYVFGGW 273
>ref|NP_001030476.1| rab9 effector protein with kelch motifs [Bos taurus].
Length = 372
Score = 52.4 bits (124), Expect = 6e-07
Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 2/196 (1%)
Frame = +2
Query: 272 DARRTQVVETPCSPPSPRLNASLSAHPEKDELILFGGEYFNGQKTLLYNELYTYSIRKDA 451
D R E PPSPR + SA D+L +FGG G + + +L+ +
Sbjct: 122 DTRTWTTPEVTGPPPSPRTFHTSSA-AIGDQLYVFGGGE-RGAQPVQDVQLHVFDANTLT 179
Query: 452 WTKVDIPNPPPR-RCAHQAVAVPQGGGQLWIFGGEFASPDGEQFYHYRDLWVLHLATKTW 628
W++ + PP R H VA G +L+I GG G+ FY DL + ++ W
Sbjct: 180 WSQPETHGKPPSPRHGHVMVA---AGTKLFIHGG----LAGDNFYD--DLHCIDISDMKW 230
Query: 629 EQV-XXXXXXXXXXXHRMVAWKRQLILFGGFHESTRDYVYYNDVYTFDLDTSTWTKLSLS 805
+++ H VA + L +FGG + N +Y + ++ WT L
Sbjct: 231 QKLRPTGAAPTGCAAHSAVAVGKHLYVFGGMTPTGA----LNTMYQYHIEKQHWTLLKFE 286
Query: 806 GTGPTPRSGCQMSVTP 853
+ PT R M + P
Sbjct: 287 NSPPTGRLDHSMCIIP 302
Score = 49.7 bits (117), Expect = 4e-06
Identities = 49/174 (28%), Positives = 70/174 (40%), Gaps = 4/174 (2%)
Frame = +2
Query: 371 LFGGEYFNGQKTLLYNELYTYSIRKDAWTKVDIPNPPPR-RCAHQAVAVPQGGGQLWIFG 547
+FGG +G + N L + WT ++ PPP R H + A G QL++FG
Sbjct: 103 VFGGADQSGNR----NCLQVLNPDTRTWTTPEVTGPPPSPRTFHTSSAAI--GDQLYVFG 156
Query: 548 GEFASPDGEQFYHYRDLWVLHLATKTWEQVXXXXXXXXXXX-HRMVAWKRQLILFGGFHE 724
G G Q L V T TW Q H MVA +L + GG
Sbjct: 157 G---GERGAQPVQDVQLHVFDANTLTWSQPETHGKPPSPRHGHVMVAAGTKLFIHGGLAG 213
Query: 725 STRDYVYYNDVYTFDLDTSTWTKLSLSGTGPTPRSGC--QMSVTPQGSIVIYGG 880
+Y+D++ D+ W KL +G PT GC +V + ++GG
Sbjct: 214 DN----FYDDLHCIDISDMKWQKLRPTGAAPT---GCAAHSAVAVGKHLYVFGG 260
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,399,672
Number of extensions: 943178
Number of successful extensions: 4392
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4341
Number of HSP's successfully gapped: 13
Length of query: 319
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 217
Effective length of database: 14,306,398
Effective search space: 3104488366
Effective search space used: 3104488366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009589
(959 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546788.2| PREDICTED: similar to kelch domain containing 4... 435 e-122
Alignment gi|XP_532427.2| PREDICTED: similar to CG5186-PA, isoform A [Can... 61 2e-09
Alignment gi|XP_541588.2| PREDICTED: similar to Multiple EGF-like-domain ... 57 3e-08
Alignment gi|XP_867453.1| PREDICTED: similar to Host cell factor (HCF) (H... 54 3e-07
Alignment gi|XP_867443.1| PREDICTED: similar to Host cell factor (HCF) (H... 54 3e-07
Alignment gi|XP_549366.2| PREDICTED: similar to Host cell factor (HCF) (H... 54 3e-07
Alignment gi|XP_851958.1| PREDICTED: similar to Rab9 effector p40 [Canis ... 53 5e-07
Alignment gi|XP_864882.1| PREDICTED: similar to F-box only protein 42 iso... 49 7e-06
>ref|XP_546788.2| PREDICTED: similar to kelch domain containing 4 [Canis familiaris].
Length = 667
Score = 435 bits (1119), Expect = e-122
Identities = 199/241 (82%), Positives = 216/241 (89%)
Frame = +2
Query: 236 DLEALIAHFQTLDARRTQVVETPCSPPSPRLNASLSAHPEKDELILFGGEYFNGQKTLLY 415
DLEALIAHFQTLDA RTQ+VETPC PPSPRL+ASLSAHPEKDELILFGGEYFNGQKT +Y
Sbjct: 144 DLEALIAHFQTLDATRTQIVETPCPPPSPRLHASLSAHPEKDELILFGGEYFNGQKTFVY 203
Query: 416 NELYTYSIRKDAWTKVDIPNPPPRRCAHQAVAVPQGGGQLWIFGGEFASPDGEQFYHYRD 595
NELY Y+I+KD WTKV+IPNPPPRRCAHQAV VPQGGGQLW+FGGEFASPDGEQFYHY+D
Sbjct: 204 NELYVYNIKKDTWTKVEIPNPPPRRCAHQAVVVPQGGGQLWVFGGEFASPDGEQFYHYKD 263
Query: 596 LWVLHLATKTWEQVXXXXXXXXXXXHRMVAWKRQLILFGGFHESTRDYVYYNDVYTFDLD 775
LWVLHLATKTWEQV HRMVAWK+QLILFGGFHESTRDY+YYNDVY F+LD
Sbjct: 264 LWVLHLATKTWEQVRSTGGPSGRSGHRMVAWKKQLILFGGFHESTRDYIYYNDVYAFNLD 323
Query: 776 TSTWTKLSLSGTGPTPRSGCQMSVTPQGSIVIYGGYSKQRVRKDVGRGTQHGDMFLLNPE 955
T +W++LS SG GPTPRSGCQMSVTPQG IVIYGGYSKQRV+KDV RGTQH DM+LL PE
Sbjct: 324 TFSWSRLSPSGAGPTPRSGCQMSVTPQGGIVIYGGYSKQRVKKDVDRGTQHSDMYLLQPE 383
Query: 956 E 958
+
Sbjct: 384 D 384
>ref|XP_532427.2| PREDICTED: similar to CG5186-PA, isoform A [Canis familiaris].
Length = 976
Score = 60.8 bits (146), Expect = 2e-09
Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Frame = +2
Query: 476 PPPRRCAHQAVAVPQGGGQLWIFGG------EFASPDGEQFYHYRDLWVLHLATKTWEQV 637
PPP R H+ VA L++FGG E PD E + +R+LW H AT W Q+
Sbjct: 78 PPPARSGHRCVA---DNTNLYVFGGYNPDYDESGGPDNEDYPLFRELWRYHFATGVWHQM 134
Query: 638 XXXXXXXXXXXH-RMVAWKRQLILFGG----FHESTRDYVYYNDVYTFDLDTSTWTKLSL 802
+V L++FGG F ES NDV+ ++ W LS
Sbjct: 135 GTDGYMPRELASMSLVLHGNNLLVFGGTGIPFGESNG-----NDVHVCNVKYKRWALLSC 189
Query: 803 SGTGPTPRSGCQMSVTPQGSIVIYGG 880
G P+ G M++ GS+ ++GG
Sbjct: 190 RGKKPSRIYGQAMAII-NGSLYVFGG 214
>ref|XP_541588.2| PREDICTED: similar to Multiple EGF-like-domain protein 4 [Canis
familiaris].
Length = 2789
Score = 57.0 bits (136), Expect = 3e-08
Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 10/183 (5%)
Frame = +2
Query: 365 LILFGGEYFNGQKTLLYNELYTYSIRKDAWTKVDI------PNPPPRRCAHQAVAVPQGG 526
L +FGG G L LY YS+ + WT++ P P PR H A V G
Sbjct: 1523 LWMFGGL---GLPQGLLGNLYRYSVSERRWTQMLAGAEDGGPGPSPRSF-HAAAYVSSGR 1578
Query: 527 GQLWIFGGEFASPDGEQFYHYRDLWVLHLATKTW--EQVXXXXXXXXXXXHRMVAWK-RQ 697
G +++ GG A RD W+L+L T W E+V H + + +
Sbjct: 1579 GAMYLLGGLTAGGVA------RDFWILNLTTLQWRQEKVPQTVELPAVAGHTLTSRRGLS 1632
Query: 698 LILFGGFHESTRDYVYYNDVYTFDLDTSTWTKLSLSGTGPTPRSG-CQMSVTPQGSIVIY 874
L+L GG+ + + ++ + L T TW + SGT PT G + S+ ++
Sbjct: 1633 LLLVGGYSPESG---FNQQLFEYQLVTGTWVSGAQSGTPPTGLYGHSAVYHEATDSLYVF 1689
Query: 875 GGY 883
GG+
Sbjct: 1690 GGF 1692
>ref|XP_867453.1| PREDICTED: similar to Host cell factor (HCF) (HCF-1) (C1 factor)
(VP16 accessory protein) (VCAF) (CFF) isoform 3 [Canis
familiaris].
Length = 2053
Score = 53.5 bits (127), Expect = 3e-07
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 16/189 (8%)
Frame = +2
Query: 365 LILFGGEYFNGQKTLLYNELYTYSIRKDAWTKVDIPNPP--PRRCAHQAVAVPQGGGQLW 538
L++FGG G+ + N+LY + W ++ P P C + G + +
Sbjct: 94 LLVFGGMVEYGKYS---NDLYELQASRWEWKRLKAKTPKNGPPPCPRLGHSFSLVGNKCY 150
Query: 539 IFGG---EFASPDGEQFYHYRDLWVLHL----ATKTWE-QVXXXXXXXXXXXHRMVAW-- 688
+FGG + P + DL++L L W+ + H V +
Sbjct: 151 LFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVVYTE 210
Query: 689 ----KRQLILFGGFHESTRDYVYYNDVYTFDLDTSTWTKLSLSGTGPTPRSGCQMSVTPQ 856
K +L+++GG D++T D++T TW K SLSG P PRS + T
Sbjct: 211 KDNKKSKLVIYGGMSGCR-----LGDLWTLDIETLTWNKPSLSGVAPLPRS-LHSATTIG 264
Query: 857 GSIVIYGGY 883
+ ++GG+
Sbjct: 265 NKMYVFGGW 273
>ref|XP_867443.1| PREDICTED: similar to Host cell factor (HCF) (HCF-1) (C1 factor)
(VP16 accessory protein) (VCAF) (CFF) isoform 2 [Canis
familiaris].
Length = 2039
Score = 53.5 bits (127), Expect = 3e-07
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 16/189 (8%)
Frame = +2
Query: 365 LILFGGEYFNGQKTLLYNELYTYSIRKDAWTKVDIPNPP--PRRCAHQAVAVPQGGGQLW 538
L++FGG G+ + N+LY + W ++ P P C + G + +
Sbjct: 94 LLVFGGMVEYGKYS---NDLYELQASRWEWKRLKAKTPKNGPPPCPRLGHSFSLVGNKCY 150
Query: 539 IFGG---EFASPDGEQFYHYRDLWVLHL----ATKTWE-QVXXXXXXXXXXXHRMVAW-- 688
+FGG + P + DL++L L W+ + H V +
Sbjct: 151 LFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVVYTE 210
Query: 689 ----KRQLILFGGFHESTRDYVYYNDVYTFDLDTSTWTKLSLSGTGPTPRSGCQMSVTPQ 856
K +L+++GG D++T D++T TW K SLSG P PRS + T
Sbjct: 211 KDNKKSKLVIYGGMSGCR-----LGDLWTLDIETLTWNKPSLSGVAPLPRS-LHSATTIG 264
Query: 857 GSIVIYGGY 883
+ ++GG+
Sbjct: 265 NKMYVFGGW 273
>ref|XP_549366.2| PREDICTED: similar to Host cell factor (HCF) (HCF-1) (C1 factor)
(VP16 accessory protein) (VCAF) (CFF) isoform 1 [Canis
familiaris].
Length = 2098
Score = 53.5 bits (127), Expect = 3e-07
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 16/189 (8%)
Frame = +2
Query: 365 LILFGGEYFNGQKTLLYNELYTYSIRKDAWTKVDIPNPP--PRRCAHQAVAVPQGGGQLW 538
L++FGG G+ + N+LY + W ++ P P C + G + +
Sbjct: 94 LLVFGGMVEYGKYS---NDLYELQASRWEWKRLKAKTPKNGPPPCPRLGHSFSLVGNKCY 150
Query: 539 IFGG---EFASPDGEQFYHYRDLWVLHL----ATKTWE-QVXXXXXXXXXXXHRMVAW-- 688
+FGG + P + DL++L L W+ + H V +
Sbjct: 151 LFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVVYTE 210
Query: 689 ----KRQLILFGGFHESTRDYVYYNDVYTFDLDTSTWTKLSLSGTGPTPRSGCQMSVTPQ 856
K +L+++GG D++T D++T TW K SLSG P PRS + T
Sbjct: 211 KDNKKSKLVIYGGMSGCR-----LGDLWTLDIETLTWNKPSLSGVAPLPRS-LHSATTIG 264
Query: 857 GSIVIYGGY 883
+ ++GG+
Sbjct: 265 NKMYVFGGW 273
>ref|XP_851958.1| PREDICTED: similar to Rab9 effector p40 [Canis familiaris].
Length = 318
Score = 52.8 bits (125), Expect = 5e-07
Identities = 53/204 (25%), Positives = 82/204 (40%), Gaps = 7/204 (3%)
Frame = +2
Query: 302 PCSPPSPRLNASLSAHP-----EKDELILFGGEYFNGQKTLLYNELYTYSIRKDAWTKVD 466
P P R+ S S P ++ ++ + GG N ++++YT + WT +
Sbjct: 24 PGDSPCARVGHSCSYLPPVGDAKRGKVFIVGGADPNRS----FSDVYTMDLATRTWTMPE 79
Query: 467 IPN-PPPRRCAHQAVAVPQGGGQLWIFGGEFASPDGEQFYHYRDLWVLHLATKTWEQ-VX 640
+ + PP R H + A G QL++FGG G Q L V + TW Q
Sbjct: 80 VTSCPPSPRTLHTSSAAI--GNQLYVFGG---GERGAQPVQDVKLHVFDANSLTWSQPET 134
Query: 641 XXXXXXXXXXHRMVAWKRQLILFGGFHESTRDYVYYNDVYTFDLDTSTWTKLSLSGTGPT 820
H MVA +L + GG +Y+D++ D+ W +LS +G PT
Sbjct: 135 LGKPPSPRHGHVMVAAGTKLFIHGGLAGDK----FYDDLHCIDIRDMKWQELSPTGAPPT 190
Query: 821 PRSGCQMSVTPQGSIVIYGGYSKQ 892
GC S+ I G + Q
Sbjct: 191 ---GCAAHSAESKSLYISGNFLTQ 211
>ref|XP_864882.1| PREDICTED: similar to F-box only protein 42 isoform 5 [Canis
familiaris].
Length = 678
Score = 48.9 bits (115), Expect = 7e-06
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Frame = +2
Query: 308 SPPSPRLNASLSAHPEKDELILFGG-----EYFNGQKTLLYNELYTYSIRKDAWTKVDIP 472
S PSP+ A+L + KD L+LFGG Y Q ++E++TYS K+ W +
Sbjct: 130 SYPSPKAGATLVVY--KDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTT 187
Query: 473 NPPPRRCAHQAVAVPQGGGQLWIFGGEFASPDGEQFYHYRDLWVLHLATKTWEQ 634
+ PP H + + ++ +FGG S D+WVL L W +
Sbjct: 188 HGPPPMAGHSSCVIDD---KMIVFGGSLGSRQMS-----NDVWVLDLEQWAWSK 233
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,766,162
Number of extensions: 933810
Number of successful extensions: 4657
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4583
Number of HSP's successfully gapped: 9
Length of query: 319
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 216
Effective length of database: 15,440,896
Effective search space: 3335233536
Effective search space used: 3335233536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009589
(959 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230769.1| kelch domain containing 4 [Sus scrofa]. 479 e-135
Alignment gi|XP_003360845.1| PREDICTED: kelch domain-containing protein 1... 61 1e-09
Alignment gi|XP_003127214.2| PREDICTED: multiple epidermal growth factor-... 56 3e-08
Alignment gi|XP_003135533.1| PREDICTED: host cell factor 1 [Sus scrofa]. 54 2e-07
>ref|NP_001230769.1| kelch domain containing 4 [Sus scrofa].
Length = 580
Score = 479 bits (1232), Expect = e-135
Identities = 228/241 (94%), Positives = 228/241 (94%)
Frame = +2
Query: 236 DLEALIAHFQTLDARRTQVVETPCSPPSPRLNASLSAHPEKDELILFGGEYFNGQKTLLY 415
DLEALIAHFQTLDARRTQVVETPCSPPSPRLNASLSAHPEKDELILFGGEYFNGQKTLLY
Sbjct: 35 DLEALIAHFQTLDARRTQVVETPCSPPSPRLNASLSAHPEKDELILFGGEYFNGQKTLLY 94
Query: 416 NELYTYSIRKDAWTKVDIPNPPPRRCAHQAVAVPQGGGQLWIFGGEFASPDGEQFYHYRD 595
NELYTYSIRKDAWTKVDIPNPPPRRCAHQAVAVPQGGGQLWIFGGEFASPDGEQFYHYRD
Sbjct: 95 NELYTYSIRKDAWTKVDIPNPPPRRCAHQAVAVPQGGGQLWIFGGEFASPDGEQFYHYRD 154
Query: 596 LWVLHLATKTWEQVXXXXXXXXXXXHRMVAWKRQLILFGGFHESTRDYVYYNDVYTFDLD 775
LWVLHLATKTWEQV HRMVAWKRQLILFGGFHESTRDYVYYNDVYTFDLD
Sbjct: 155 LWVLHLATKTWEQVRSPGGPSGRSGHRMVAWKRQLILFGGFHESTRDYVYYNDVYTFDLD 214
Query: 776 TSTWTKLSLSGTGPTPRSGCQMSVTPQGSIVIYGGYSKQRVRKDVGRGTQHGDMFLLNPE 955
TSTWTKLSLSGTGPTPRSGCQMSVTPQGSIVIYGGYSKQRVRKDV RGTQHGDMFLL PE
Sbjct: 215 TSTWTKLSLSGTGPTPRSGCQMSVTPQGSIVIYGGYSKQRVRKDVDRGTQHGDMFLLKPE 274
Query: 956 E 958
E
Sbjct: 275 E 275
>ref|XP_003360845.1| PREDICTED: kelch domain-containing protein 10-like, partial [Sus
scrofa].
Length = 386
Score = 60.8 bits (146), Expect = 1e-09
Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Frame = +2
Query: 476 PPPRRCAHQAVAVPQGGGQLWIFGG------EFASPDGEQFYHYRDLWVLHLATKTWEQV 637
PPP R H+ VA L++FGG E PD E + +R+LW H AT W Q+
Sbjct: 32 PPPARSGHRCVA---DNTNLYVFGGYNPDYDESGGPDNEDYPLFRELWRYHFATGVWHQM 88
Query: 638 XXXXXXXXXXXH-RMVAWKRQLILFGG----FHESTRDYVYYNDVYTFDLDTSTWTKLSL 802
+V L++FGG F ES NDV+ ++ W LS
Sbjct: 89 GTDGYMPRELASMSLVLHGNNLLVFGGTGIPFGESNG-----NDVHVCNVKYKRWALLSC 143
Query: 803 SGTGPTPRSGCQMSVTPQGSIVIYGG 880
G P+ G M++ GS+ ++GG
Sbjct: 144 RGKKPSRIYGQAMAII-NGSLYVFGG 168
>ref|XP_003127214.2| PREDICTED: multiple epidermal growth factor-like domains protein 8,
partial [Sus scrofa].
Length = 2550
Score = 56.2 bits (134), Expect = 3e-08
Identities = 52/183 (28%), Positives = 77/183 (42%), Gaps = 10/183 (5%)
Frame = +2
Query: 365 LILFGGEYFNGQKTLLYNELYTYSIRKDAWTKVDI------PNPPPRRCAHQAVAVPQGG 526
L +FGG G L LY YS+ + WT++ P P PR H A VP G
Sbjct: 1270 LWMFGGL---GLPQGLLGNLYRYSVSERRWTQMLAGAEDGGPGPSPRSF-HAAAYVPAGR 1325
Query: 527 GQLWIFGGEFASPDGEQFYHYRDLWVLHLATKTW--EQVXXXXXXXXXXXHRMVAWK-RQ 697
G +++ GG A RD WVL+L T W E+ H + +
Sbjct: 1326 GAMYLLGGLTAGGVA------RDFWVLNLTTLQWRQEKAPQTVELPAVAGHTLTPRRGLS 1379
Query: 698 LILFGGFHESTRDYVYYNDVYTFDLDTSTWTKLSLSGTGPTPRSG-CQMSVTPQGSIVIY 874
L+L GG+ + + + + + L T TW + SGT PT G + S+ ++
Sbjct: 1380 LLLVGGY---SPENGFNQQLLEYQLATGTWVSGAQSGTPPTGLYGHSAVYHEATDSLYVF 1436
Query: 875 GGY 883
GG+
Sbjct: 1437 GGF 1439
>ref|XP_003135533.1| PREDICTED: host cell factor 1 [Sus scrofa].
Length = 2029
Score = 53.5 bits (127), Expect = 2e-07
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 16/189 (8%)
Frame = +2
Query: 365 LILFGGEYFNGQKTLLYNELYTYSIRKDAWTKVDIPNPP--PRRCAHQAVAVPQGGGQLW 538
L++FGG G+ + N+LY + W ++ P P C + G + +
Sbjct: 94 LLVFGGMVEYGKYS---NDLYELQASRWEWKRLKAKTPKNGPPPCPRLGHSFSLVGNKCY 150
Query: 539 IFGG---EFASPDGEQFYHYRDLWVLHL----ATKTWE-QVXXXXXXXXXXXHRMVAW-- 688
+FGG + P + DL++L L W+ + H V +
Sbjct: 151 LFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVVYTE 210
Query: 689 ----KRQLILFGGFHESTRDYVYYNDVYTFDLDTSTWTKLSLSGTGPTPRSGCQMSVTPQ 856
K +L+++GG D++T D++T TW K SLSG P PRS + T
Sbjct: 211 KDNKKSKLVIYGGMSGCR-----LGDLWTLDIETLTWNKPSLSGVAPLPRS-LHSATTIG 264
Query: 857 GSIVIYGGY 883
+ ++GG+
Sbjct: 265 NKMYVFGGW 273
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,067,603
Number of extensions: 678538
Number of successful extensions: 2794
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2765
Number of HSP's successfully gapped: 5
Length of query: 319
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 220
Effective length of database: 8,879,129
Effective search space: 1953408380
Effective search space used: 1953408380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009589
(959 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663580.2| kelch domain-containing protein 4 [Mus musculus]. 431 e-121
Alignment gi|NP_084018.1| kelch domain-containing protein 10 [Mus musculu... 60 3e-09
Alignment gi|NP_001153872.1| multiple epidermal growth factor-like domain... 57 3e-08
Alignment gi|NP_032250.2| host cell factor 1 [Mus musculus]. 54 2e-07
>ref|NP_663580.2| kelch domain-containing protein 4 [Mus musculus].
Length = 584
Score = 431 bits (1108), Expect = e-121
Identities = 199/241 (82%), Positives = 211/241 (87%)
Frame = +2
Query: 236 DLEALIAHFQTLDARRTQVVETPCSPPSPRLNASLSAHPEKDELILFGGEYFNGQKTLLY 415
DLEALIAHFQTLDA++TQV ETPC PPSPRLNASLSAHPEKDELILFGGEYFNGQKT +Y
Sbjct: 35 DLEALIAHFQTLDAKKTQVTETPCPPPSPRLNASLSAHPEKDELILFGGEYFNGQKTFMY 94
Query: 416 NELYTYSIRKDAWTKVDIPNPPPRRCAHQAVAVPQGGGQLWIFGGEFASPDGEQFYHYRD 595
NELY YSIRKD WTKVDIP PPPRRCAHQAV VPQGGGQLW+FGGEFASPDGEQFYHY+D
Sbjct: 95 NELYIYSIRKDTWTKVDIPGPPPRRCAHQAVVVPQGGGQLWVFGGEFASPDGEQFYHYKD 154
Query: 596 LWVLHLATKTWEQVXXXXXXXXXXXHRMVAWKRQLILFGGFHESTRDYVYYNDVYTFDLD 775
LWVLHLATKTWEQ+ HRMVAWKRQLILFGGFHES RDY+YY+DVYTF LD
Sbjct: 155 LWVLHLATKTWEQIRSTGGPSGRSGHRMVAWKRQLILFGGFHESARDYIYYSDVYTFSLD 214
Query: 776 TSTWTKLSLSGTGPTPRSGCQMSVTPQGSIVIYGGYSKQRVRKDVGRGTQHGDMFLLNPE 955
T W+KLS SG GPTPRSGC M+VTPQGSI IYGGYSKQRV+KDV +GTQH DMFLL P
Sbjct: 215 TFQWSKLSPSGPGPTPRSGCLMAVTPQGSIAIYGGYSKQRVKKDVDKGTQHSDMFLLKPA 274
Query: 956 E 958
E
Sbjct: 275 E 275
Score = 51.6 bits (122), Expect = 9e-07
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Frame = +2
Query: 356 KDELILFGGEYFNGQKTLLYNELYTYSIRKDAWTKVDI--PNPPPRRCAHQAVAVPQGGG 529
K +LILFGG + + + + Y+++YT+S+ W+K+ P P PR AV PQG
Sbjct: 186 KRQLILFGGFHESARDYIYYSDVYTFSLDTFQWSKLSPSGPGPTPRSGCLMAVT-PQGS- 243
Query: 530 QLWIFGG---EFASPDGEQFYHYRDLWVLHLATK-----TWEQVXXXXXXXXXXXHRMVA 685
+ I+GG + D ++ + D+++L A W ++ VA
Sbjct: 244 -IAIYGGYSKQRVKKDVDKGTQHSDMFLLKPAEGGEGKWAWTRINPSGVKPTARSGFSVA 302
Query: 686 W--KRQLILFGGF----HESTRDYVYYNDVYTFDLDTSTWTKLSLSG 808
Q+++FGG E + + +++D+Y +D S W L G
Sbjct: 303 VAPNHQILVFGGVCDEEEEESLEGSFFSDLYIYDSAKSRWFAAQLKG 349
>ref|NP_084018.1| kelch domain-containing protein 10 [Mus musculus].
Length = 439
Score = 60.1 bits (144), Expect = 3e-09
Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Frame = +2
Query: 476 PPPRRCAHQAVAVPQGGGQLWIFGG------EFASPDGEQFYHYRDLWVLHLATKTWEQV 637
PPP R H+ VA L++FGG E PD E + +R+LW H AT W Q+
Sbjct: 85 PPPARSGHRCVA---DNTNLYVFGGYNPDYDESGGPDNEDYPLFRELWRYHFATGVWHQM 141
Query: 638 XXXXXXXXXXXH-RMVAWKRQLILFGG----FHESTRDYVYYNDVYTFDLDTSTWTKLSL 802
+V L++FGG F ES NDV+ ++ W LS
Sbjct: 142 GTDGYMPRELASMSLVLHGNNLLVFGGTGIPFGESNG-----NDVHVCNVKYKRWALLSC 196
Query: 803 SGTGPTPRSGCQMSVTPQGSIVIYGG 880
G P+ G M++ GS+ ++GG
Sbjct: 197 RGKRPSRIYGQAMALI-NGSLYVFGG 221
>ref|NP_001153872.1| multiple epidermal growth factor-like domains protein 8 precursor
[Mus musculus].
Length = 2789
Score = 56.6 bits (135), Expect = 3e-08
Identities = 53/183 (28%), Positives = 78/183 (42%), Gaps = 10/183 (5%)
Frame = +2
Query: 365 LILFGGEYFNGQKTLLYNELYTYSIRKDAWTKVDI------PNPPPRRCAHQAVAVPQGG 526
L +FGG G L LY YS+ + WT++ P P PR H A VP G
Sbjct: 1523 LWMFGGL---GLPQGLLGNLYRYSVSERRWTQMLAGAEDGGPGPSPRSF-HAAAYVPAGR 1578
Query: 527 GQLWIFGGEFASPDGEQFYHYRDLWVLHLATKTW--EQVXXXXXXXXXXXHRMVAWK-RQ 697
G +++ GG A RD WVL+L T W E+ H + A +
Sbjct: 1579 GAMYLLGGLTAGGVT------RDFWVLNLTTLQWRQEKPPQNMELPAVAGHTLTARRGLS 1632
Query: 698 LILFGGFHESTRDYVYYNDVYTFDLDTSTWTKLSLSGTGPTPRSG-CQMSVTPQGSIVIY 874
L+L GG+ + + + + + L T TW + SGT PT G + S+ ++
Sbjct: 1633 LLLVGGY---SPENGFNQQLLEYQLATGTWVSGAQSGTPPTGLYGHSAVYHEATDSLYVF 1689
Query: 875 GGY 883
GG+
Sbjct: 1690 GGF 1692
>ref|NP_032250.2| host cell factor 1 [Mus musculus].
Length = 2045
Score = 53.5 bits (127), Expect = 2e-07
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 16/189 (8%)
Frame = +2
Query: 365 LILFGGEYFNGQKTLLYNELYTYSIRKDAWTKVDIPNPP--PRRCAHQAVAVPQGGGQLW 538
L++FGG G+ + N+LY + W ++ P P C + G + +
Sbjct: 94 LLVFGGMVEYGKYS---NDLYELQASRWEWKRLKAKTPKNGPPPCPRLGHSFSLVGNKCY 150
Query: 539 IFGG---EFASPDGEQFYHYRDLWVLHL----ATKTWE-QVXXXXXXXXXXXHRMVAW-- 688
+FGG + P + DL++L L W+ + H V +
Sbjct: 151 LFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVVYTE 210
Query: 689 ----KRQLILFGGFHESTRDYVYYNDVYTFDLDTSTWTKLSLSGTGPTPRSGCQMSVTPQ 856
K +L+++GG D++T D++T TW K SLSG P PRS + T
Sbjct: 211 KDNKKSKLVIYGGMSGCR-----LGDLWTLDIETLTWNKPSLSGVAPLPRS-LHSATTIG 264
Query: 857 GSIVIYGGY 883
+ ++GG+
Sbjct: 265 NKMYVFGGW 273
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,237,742
Number of extensions: 736174
Number of successful extensions: 3235
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3205
Number of HSP's successfully gapped: 6
Length of query: 319
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 218
Effective length of database: 12,583,923
Effective search space: 2743295214
Effective search space used: 2743295214
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009589
(959 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060036.2| kelch domain-containing protein 4 isoform 1 [Ho... 435 e-122
Alignment gi|NP_001171785.1| kelch domain-containing protein 4 isoform 2 ... 380 e-105
Alignment gi|NP_001171783.1| kelch domain-containing protein 4 isoform 3 ... 332 3e-91
Alignment gi|NP_055812.1| kelch domain-containing protein 10 [Homo sapien... 61 2e-09
Alignment gi|NP_001401.2| multiple epidermal growth factor-like domains p... 57 2e-08
Alignment gi|NP_001167624.1| rab9 effector protein with kelch motifs isof... 55 7e-08
Alignment gi|NP_001167623.1| rab9 effector protein with kelch motifs isof... 55 7e-08
Alignment gi|NP_005824.2| rab9 effector protein with kelch motifs isoform... 55 7e-08
Alignment gi|NP_005325.2| host cell factor 1 [Homo sapiens]. 55 9e-08
>ref|NP_060036.2| kelch domain-containing protein 4 isoform 1 [Homo sapiens].
Length = 520
Score = 435 bits (1119), Expect = e-122
Identities = 200/241 (82%), Positives = 214/241 (88%)
Frame = +2
Query: 236 DLEALIAHFQTLDARRTQVVETPCSPPSPRLNASLSAHPEKDELILFGGEYFNGQKTLLY 415
DLEALIAHFQTLDA+RTQ VE PC PPSPRLNASLS HPEKDELILFGGEYFNGQKT LY
Sbjct: 35 DLEALIAHFQTLDAKRTQTVELPCPPPSPRLNASLSVHPEKDELILFGGEYFNGQKTFLY 94
Query: 416 NELYTYSIRKDAWTKVDIPNPPPRRCAHQAVAVPQGGGQLWIFGGEFASPDGEQFYHYRD 595
NELY Y+ RKD WTKVDIP+PPPRRCAHQAV VPQGGGQLW+FGGEFASP+GEQFYHY+D
Sbjct: 95 NELYVYNTRKDTWTKVDIPSPPPRRCAHQAVVVPQGGGQLWVFGGEFASPNGEQFYHYKD 154
Query: 596 LWVLHLATKTWEQVXXXXXXXXXXXHRMVAWKRQLILFGGFHESTRDYVYYNDVYTFDLD 775
LWVLHLATKTWEQV HRMVAWKRQLILFGGFHESTRDY+YYNDVY F+LD
Sbjct: 155 LWVLHLATKTWEQVKSTGGPSGRSGHRMVAWKRQLILFGGFHESTRDYIYYNDVYAFNLD 214
Query: 776 TSTWTKLSLSGTGPTPRSGCQMSVTPQGSIVIYGGYSKQRVRKDVGRGTQHGDMFLLNPE 955
T TW+KLS SGTGPTPRSGCQMSVTPQG IV+YGGYSKQRV+KDV +GT+H DMFLL PE
Sbjct: 215 TFTWSKLSPSGTGPTPRSGCQMSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPE 274
Query: 956 E 958
+
Sbjct: 275 D 275
>ref|NP_001171785.1| kelch domain-containing protein 4 isoform 2 [Homo sapiens].
Length = 489
Score = 380 bits (975), Expect = e-105
Identities = 179/241 (74%), Positives = 194/241 (80%)
Frame = +2
Query: 236 DLEALIAHFQTLDARRTQVVETPCSPPSPRLNASLSAHPEKDELILFGGEYFNGQKTLLY 415
DLEALIAHFQTLDA+RTQ VE PC PPSPRLNASLS HPEKDELILFGGEYFNGQKT LY
Sbjct: 35 DLEALIAHFQTLDAKRTQTVELPCPPPSPRLNASLSVHPEKDELILFGGEYFNGQKTFLY 94
Query: 416 NELYTYSIRKDAWTKVDIPNPPPRRCAHQAVAVPQGGGQLWIFGGEFASPDGEQFYHYRD 595
NELY Y+ RKD WTKVDIP+PPPRRCAHQAV VPQGGGQLW+FGGEFASP+GEQFYHY+D
Sbjct: 95 NELYVYNTRKDTWTKVDIPSPPPRRCAHQAVVVPQGGGQLWVFGGEFASPNGEQFYHYKD 154
Query: 596 LWVLHLATKTWEQVXXXXXXXXXXXHRMVAWKRQLILFGGFHESTRDYVYYNDVYTFDLD 775
LWVLHLATKTWEQV +DY+YYNDVY F+LD
Sbjct: 155 LWVLHLATKTWEQV-------------------------------KDYIYYNDVYAFNLD 183
Query: 776 TSTWTKLSLSGTGPTPRSGCQMSVTPQGSIVIYGGYSKQRVRKDVGRGTQHGDMFLLNPE 955
T TW+KLS SGTGPTPRSGCQMSVTPQG IV+YGGYSKQRV+KDV +GT+H DMFLL PE
Sbjct: 184 TFTWSKLSPSGTGPTPRSGCQMSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPE 243
Query: 956 E 958
+
Sbjct: 244 D 244
>ref|NP_001171783.1| kelch domain-containing protein 4 isoform 3 [Homo sapiens].
Length = 463
Score = 332 bits (851), Expect = 3e-91
Identities = 149/187 (79%), Positives = 164/187 (87%)
Frame = +2
Query: 398 QKTLLYNELYTYSIRKDAWTKVDIPNPPPRRCAHQAVAVPQGGGQLWIFGGEFASPDGEQ 577
++T LYNELY Y+ RKD WTKVDIP+PPPRRCAHQAV VPQGGGQLW+FGGEFASP+GEQ
Sbjct: 32 EETFLYNELYVYNTRKDTWTKVDIPSPPPRRCAHQAVVVPQGGGQLWVFGGEFASPNGEQ 91
Query: 578 FYHYRDLWVLHLATKTWEQVXXXXXXXXXXXHRMVAWKRQLILFGGFHESTRDYVYYNDV 757
FYHY+DLWVLHLATKTWEQV HRMVAWKRQLILFGGFHESTRDY+YYNDV
Sbjct: 92 FYHYKDLWVLHLATKTWEQVKSTGGPSGRSGHRMVAWKRQLILFGGFHESTRDYIYYNDV 151
Query: 758 YTFDLDTSTWTKLSLSGTGPTPRSGCQMSVTPQGSIVIYGGYSKQRVRKDVGRGTQHGDM 937
Y F+LDT TW+KLS SGTGPTPRSGCQMSVTPQG IV+YGGYSKQRV+KDV +GT+H DM
Sbjct: 152 YAFNLDTFTWSKLSPSGTGPTPRSGCQMSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDM 211
Query: 938 FLLNPEE 958
FLL PE+
Sbjct: 212 FLLKPED 218
>ref|NP_055812.1| kelch domain-containing protein 10 [Homo sapiens].
Length = 442
Score = 60.8 bits (146), Expect = 2e-09
Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Frame = +2
Query: 476 PPPRRCAHQAVAVPQGGGQLWIFGG------EFASPDGEQFYHYRDLWVLHLATKTWEQV 637
PPP R H+ VA L++FGG E PD E + +R+LW H AT W Q+
Sbjct: 88 PPPARSGHRCVA---DNTNLYVFGGYNPDYDESGGPDNEDYPLFRELWRYHFATGVWHQM 144
Query: 638 XXXXXXXXXXXH-RMVAWKRQLILFGG----FHESTRDYVYYNDVYTFDLDTSTWTKLSL 802
+V L++FGG F ES NDV+ ++ W LS
Sbjct: 145 GTDGYMPRELASMSLVLHGNNLLVFGGTGIPFGESNG-----NDVHVCNVKYKRWALLSC 199
Query: 803 SGTGPTPRSGCQMSVTPQGSIVIYGG 880
G P+ G M++ GS+ ++GG
Sbjct: 200 RGKKPSRIYGQAMAII-NGSLYVFGG 224
>ref|NP_001401.2| multiple epidermal growth factor-like domains protein 8 [Homo
sapiens].
Length = 2778
Score = 57.4 bits (137), Expect = 2e-08
Identities = 53/183 (28%), Positives = 78/183 (42%), Gaps = 10/183 (5%)
Frame = +2
Query: 365 LILFGGEYFNGQKTLLYNELYTYSIRKDAWTKVDI------PNPPPRRCAHQAVAVPQGG 526
L +FGG G L LY YS+ + WT++ P P PR H A VP G
Sbjct: 1456 LWMFGGL---GLPQGLLGNLYRYSVSERRWTQMLAGAEDGGPGPSPRSF-HAAAYVPAGR 1511
Query: 527 GQLWIFGGEFASPDGEQFYHYRDLWVLHLATKTW--EQVXXXXXXXXXXXHRMVAWK-RQ 697
G +++ GG A RD WVL+L T W E+ H + A +
Sbjct: 1512 GAMYLLGGLTAGGVT------RDFWVLNLTTLQWRQEKAPQTVELPAVAGHTLTARRGLS 1565
Query: 698 LILFGGFHESTRDYVYYNDVYTFDLDTSTWTKLSLSGTGPTPRSG-CQMSVTPQGSIVIY 874
L+L GG+ + + + + + L T TW + SGT PT G + S+ ++
Sbjct: 1566 LLLVGGY---SPENGFNQQLLEYQLATGTWVSGAQSGTPPTGLYGHSAVYHEATDSLYVF 1622
Query: 875 GGY 883
GG+
Sbjct: 1623 GGF 1625
>ref|NP_001167624.1| rab9 effector protein with kelch motifs isoform b [Homo sapiens].
Length = 321
Score = 55.5 bits (132), Expect = 7e-08
Identities = 53/202 (26%), Positives = 84/202 (41%), Gaps = 9/202 (4%)
Frame = +2
Query: 302 PCSPPSPRLNASLSAHP-----EKDELILFGGEYFNGQKTLLYNELYTYSIRKDAWTKVD 466
P P R+ S S P ++ ++ + GG N +++++T + WT +
Sbjct: 24 PGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRS----FSDVHTMDLETRTWTTPE 79
Query: 467 IPNPPPR-RCAHQAVAVPQGGGQLWIFGGEFASPDGEQFYHYRDLWVLHLATKTWEQVXX 643
+ +PPP R H + A G QL++FGG G Q L V T TW Q
Sbjct: 80 VTSPPPSPRTFHTSSAAI--GNQLYVFGG---GERGAQPVQDTKLHVFDANTLTWSQPET 134
Query: 644 XXXXXXXXX-HRMVAWKRQLILFGGFHESTRDYVYYNDVYTFDLDTSTWTKLSLSGTGPT 820
H MVA +L + GG +Y+D++ D+ W KL+ +G P
Sbjct: 135 LGNPPSPRHGHVMVAAGTKLFIHGGLAGDR----FYDDLHCIDISDMKWQKLNPTGAAP- 189
Query: 821 PRSGC--QMSVTPQGSIVIYGG 880
+GC +V + I+GG
Sbjct: 190 --AGCAAHSAVAMGKHVYIFGG 209
Score = 50.8 bits (120), Expect = 2e-06
Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 7/164 (4%)
Frame = +2
Query: 440 RKDAWTKVDIPNPPP-RRCAHQAVAVPQGG----GQLWIFGGEFASPDGEQFYHYRDLWV 604
RK W + +P P R H +P G G+++I GG A+P+ + D+
Sbjct: 14 RKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGG--ANPNRS----FSDVHT 67
Query: 605 LHLATKTWE--QVXXXXXXXXXXXHRMVAWKRQLILFGGFHESTRDYVYYNDVYTFDLDT 778
+ L T+TW +V A QL +FGG + V ++ FD +T
Sbjct: 68 MDLETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQP-VQDTKLHVFDANT 126
Query: 779 STWTKLSLSGTGPTPRSGCQMSVTPQGSIVIYGGYSKQRVRKDV 910
TW++ G P+PR G + V + I+GG + R D+
Sbjct: 127 LTWSQPETLGNPPSPRHG-HVMVAAGTKLFIHGGLAGDRFYDDL 169
Score = 50.4 bits (119), Expect = 2e-06
Identities = 49/201 (24%), Positives = 80/201 (39%), Gaps = 2/201 (0%)
Frame = +2
Query: 257 HFQTLDARRTQVVETPCSPPSPRLNASLSAHPEKDELILFGGEYFNGQKTLLYNELYTYS 436
H L+ R E PPSPR + SA + GGE G + + +L+ +
Sbjct: 66 HTMDLETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGE--RGAQPVQDTKLHVFD 123
Query: 437 IRKDAWTKVD-IPNPPPRRCAHQAVAVPQGGGQLWIFGGEFASPDGEQFYHYRDLWVLHL 613
W++ + + NPP R H VA G +L+I GG G++FY DL + +
Sbjct: 124 ANTLTWSQPETLGNPPSPRHGHVMVA---AGTKLFIHGG----LAGDRFYD--DLHCIDI 174
Query: 614 ATKTWEQV-XXXXXXXXXXXHRMVAWKRQLILFGGFHESTRDYVYYNDVYTFDLDTSTWT 790
+ W+++ H VA + + +FGG + + +Y + + WT
Sbjct: 175 SDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMTPAGA----LDTMYQYHTEEQHWT 230
Query: 791 KLSLSGTGPTPRSGCQMSVTP 853
L P R M + P
Sbjct: 231 LLKFDTLLPPGRLDHSMCIIP 251
>ref|NP_001167623.1| rab9 effector protein with kelch motifs isoform a [Homo sapiens].
Length = 372
Score = 55.5 bits (132), Expect = 7e-08
Identities = 58/210 (27%), Positives = 85/210 (40%), Gaps = 5/210 (2%)
Frame = +2
Query: 266 TLDARRTQVVETPCSPPSPRL-NASLSAHPEKDELILFGGEYFNGQKTLLYNELYTYSIR 442
T+D + Q C PR +AS D + +FGG +G + N L +
Sbjct: 67 TMDLGKHQWDLDTCKGLLPRYEHASFIPSCTPDRIWVFGGANQSGNR----NCLQVLNPE 122
Query: 443 KDAWTKVDIPNPPPR-RCAHQAVAVPQGGGQLWIFGGEFASPDGEQFYHYRDLWVLHLAT 619
WT ++ +PPP R H + A G QL++FGG G Q L V T
Sbjct: 123 TRTWTTPEVTSPPPSPRTFHTSSAAI--GNQLYVFGG---GERGAQPVQDTKLHVFDANT 177
Query: 620 KTWEQVXXXXXXXXXXX-HRMVAWKRQLILFGGFHESTRDYVYYNDVYTFDLDTSTWTKL 796
TW Q H MVA +L + GG +Y+D++ D+ W KL
Sbjct: 178 LTWSQPETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDR----FYDDLHCIDISDMKWQKL 233
Query: 797 SLSGTGPTPRSGC--QMSVTPQGSIVIYGG 880
+ +G P +GC +V + I+GG
Sbjct: 234 NPTGAAP---AGCAAHSAVAMGKHVYIFGG 260
>ref|NP_005824.2| rab9 effector protein with kelch motifs isoform a [Homo sapiens].
Length = 372
Score = 55.5 bits (132), Expect = 7e-08
Identities = 58/210 (27%), Positives = 85/210 (40%), Gaps = 5/210 (2%)
Frame = +2
Query: 266 TLDARRTQVVETPCSPPSPRL-NASLSAHPEKDELILFGGEYFNGQKTLLYNELYTYSIR 442
T+D + Q C PR +AS D + +FGG +G + N L +
Sbjct: 67 TMDLGKHQWDLDTCKGLLPRYEHASFIPSCTPDRIWVFGGANQSGNR----NCLQVLNPE 122
Query: 443 KDAWTKVDIPNPPPR-RCAHQAVAVPQGGGQLWIFGGEFASPDGEQFYHYRDLWVLHLAT 619
WT ++ +PPP R H + A G QL++FGG G Q L V T
Sbjct: 123 TRTWTTPEVTSPPPSPRTFHTSSAAI--GNQLYVFGG---GERGAQPVQDTKLHVFDANT 177
Query: 620 KTWEQVXXXXXXXXXXX-HRMVAWKRQLILFGGFHESTRDYVYYNDVYTFDLDTSTWTKL 796
TW Q H MVA +L + GG +Y+D++ D+ W KL
Sbjct: 178 LTWSQPETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDR----FYDDLHCIDISDMKWQKL 233
Query: 797 SLSGTGPTPRSGC--QMSVTPQGSIVIYGG 880
+ +G P +GC +V + I+GG
Sbjct: 234 NPTGAAP---AGCAAHSAVAMGKHVYIFGG 260
>ref|NP_005325.2| host cell factor 1 [Homo sapiens].
Length = 2035
Score = 55.1 bits (131), Expect = 9e-08
Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 16/189 (8%)
Frame = +2
Query: 365 LILFGGEYFNGQKTLLYNELYTYSIRKDAWTKVDIPNPP--PRRCAHQAVAVPQGGGQLW 538
L++FGG G+ + N+LY + W ++ P P C + G + +
Sbjct: 94 LLVFGGMVEYGKYS---NDLYELQASRWEWKRLKAKTPKNGPPPCPRLGHSFSLVGNKCY 150
Query: 539 IFGG---EFASPDGEQFYHYRDLWVLHL----ATKTWE-QVXXXXXXXXXXXHRMVAW-- 688
+FGG + P + DL++L L W+ + H V +
Sbjct: 151 LFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVVYTE 210
Query: 689 ----KRQLILFGGFHESTRDYVYYNDVYTFDLDTSTWTKLSLSGTGPTPRSGCQMSVTPQ 856
K +L+++GG D++T D+DT TW K SLSG P PRS + T
Sbjct: 211 KDNKKSKLVIYGGMSGCR-----LGDLWTLDIDTLTWNKPSLSGVAPLPRS-LHSATTIG 264
Query: 857 GSIVIYGGY 883
+ ++GG+
Sbjct: 265 NKMYVFGGW 273
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,764,771
Number of extensions: 897614
Number of successful extensions: 4155
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4114
Number of HSP's successfully gapped: 14
Length of query: 319
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 216
Effective length of database: 14,901,872
Effective search space: 3218804352
Effective search space used: 3218804352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009589
(959 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 305 2e-80
>Sscrofa_Chr06
|| Length = 157765593
Score = 305 bits (154), Expect = 2e-80
Identities = 160/162 (98%)
Strand = Plus / Plus
Query: 731 agagattacgtttattacaacgacgtgtacaccttcgacctggacacctcgacctggacc 790
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1752976 agagattacatttattacaacgacgtgtacaccttcgacctggacacctcgacctggacc 1753035
Query: 791 aagctgtccctgtcagggacggggcccacgccccggtcgggctgccagatgtccgtcact 850
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1753036 aagctgtccccgtcagggacggggcccacgccccggtcgggctgccagatgtccgtcact 1753095
Query: 851 ccccagggcagcatcgtcatctacggcggctactcgaagcag 892
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1753096 ccccagggcagcatcgtcatctacggcggctactcgaagcag 1753137
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 638 aggtcgcccgggggtccttccggccggagtggacatcggatggtggcctggaagagacag 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1750990 aggtcgcccgggggtccttccggccggagtggacatcggatggtggcctggaagagacag 1751049
Query: 698 ctgatcctctttggtggcttccatgagagcacaag 732
|||||||||||||||||||||||||||||||||||
Sbjct: 1751050 ctgatcctctttggtggcttccatgagagcacaag 1751084
Score = 87.7 bits (44), Expect = 1e-14
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 889 gcagagggtccggaaggatgtgggacgaggcacccagcacggcgacatgttcctgctgaa 948
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 1756533 gcagagggtccggaaggacgtggacagaggcacccagcacggcgacatgttcctgctgaa 1756592
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,677,826
Number of extensions: 98
Number of successful extensions: 98
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 3
Length of query: 959
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 938
Effective length of database: 2,808,413,156
Effective search space: 2634291540328
Effective search space used: 2634291540328
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)