Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009600
(1083 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014958.1| single-strand selective monofunctional uraci... 471 e-133
>ref|NP_001014958.1| single-strand selective monofunctional uracil DNA glycosylase [Bos
taurus].
Length = 272
Score = 471 bits (1212), Expect = e-133
Identities = 226/260 (86%), Positives = 234/260 (90%)
Frame = +3
Query: 147 MAVPQAFPLGPLHEPAGALMEPQPSPRSLAEGFLEEELRLNGELKQLQFSEPVGLIYNPV 326
MAVPQ FP GP +PAGALMEPQPSPRSLAEGFL+EELRLN EL+QLQFSE VG++YNPV
Sbjct: 1 MAVPQPFPSGPHLQPAGALMEPQPSPRSLAEGFLQEELRLNDELRQLQFSELVGIVYNPV 60
Query: 327 EYAWEPHRSYVTRYCQGPKQVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIGGSVLTPP 506
EYAWEPHRSYVTRYCQGPKQVLFLGMNPGPFGMAQTGVPFGEVS+VRDWLG+GG V TPP
Sbjct: 61 EYAWEPHRSYVTRYCQGPKQVLFLGMNPGPFGMAQTGVPFGEVSVVRDWLGLGGPVRTPP 120
Query: 507 QEHPKRPVLGLECPQSEVSGARFWGFFRNLCGQPEVFFRHCFVHNLCPLLLLAPSGRNLT 686
QEHPKRPVLGLECPQSEVSGARFWGFFRNLCGQPEVFFRHCFVHNLCPLLLLAPSGRN+T
Sbjct: 121 QEHPKRPVLGLECPQSEVSGARFWGFFRNLCGQPEVFFRHCFVHNLCPLLLLAPSGRNIT 180
Query: 687 PAELPAKQREQLLGVCDAALCXXXXXXXXXXXXXXXXXAEQRARRALAGLMPEVQVEGLL 866
PAELPAKQREQLLGVCDAALC AEQRARRALA LMPEVQVEGLL
Sbjct: 181 PAELPAKQREQLLGVCDAALCRQVQLLGVRLVVGVGRVAEQRARRALASLMPEVQVEGLL 240
Query: 867 HPSPRSPQANKGWEAVAKER 926
HPSPRSPQANKGWEAVAKER
Sbjct: 241 HPSPRSPQANKGWEAVAKER 260
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,767,967
Number of extensions: 1545603
Number of successful extensions: 9779
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9694
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 258
Effective length of database: 14,273,310
Effective search space: 3682513980
Effective search space used: 3682513980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009600
(1083 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543623.2| PREDICTED: similar to single-strand selective m... 439 e-123
>ref|XP_543623.2| PREDICTED: similar to single-strand selective monofunctional uracil
DNA glycosylase [Canis familiaris].
Length = 365
Score = 439 bits (1130), Expect = e-123
Identities = 209/255 (81%), Positives = 224/255 (87%)
Frame = +3
Query: 162 AFPLGPLHEPAGALMEPQPSPRSLAEGFLEEELRLNGELKQLQFSEPVGLIYNPVEYAWE 341
A+P+GPLHEPAGALMEPQP RSLAEGFL EELRLN EL QLQFSEPVG+IYNP+EYAWE
Sbjct: 46 AYPVGPLHEPAGALMEPQPCLRSLAEGFLAEELRLNNELSQLQFSEPVGIIYNPLEYAWE 105
Query: 342 PHRSYVTRYCQGPKQVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIGGSVLTPPQEHPK 521
PH SYVTRYC+GPK+VLFLGMNPGPFGMAQTGVPFGEV++VRDWLGIGG+V TP QEHPK
Sbjct: 106 PHHSYVTRYCRGPKEVLFLGMNPGPFGMAQTGVPFGEVNVVRDWLGIGGTVSTPAQEHPK 165
Query: 522 RPVLGLECPQSEVSGARFWGFFRNLCGQPEVFFRHCFVHNLCPLLLLAPSGRNLTPAELP 701
RPVLGLECPQSEVSGARFWGFF+NLCGQPEVFFRHCFVHNLCPLL L P+GRNLTPAELP
Sbjct: 166 RPVLGLECPQSEVSGARFWGFFQNLCGQPEVFFRHCFVHNLCPLLFLDPNGRNLTPAELP 225
Query: 702 AKQREQLLGVCDAALCXXXXXXXXXXXXXXXXXAEQRARRALAGLMPEVQVEGLLHPSPR 881
AKQREQLL VCDAAL AEQRARRALAGL+PEV+VE LLHPSPR
Sbjct: 226 AKQREQLLRVCDAALFRQVQLLEVRLVVGVGRLAEQRARRALAGLLPEVRVEWLLHPSPR 285
Query: 882 SPQANKGWEAVAKER 926
SPQAN+GWEA AK+R
Sbjct: 286 SPQANRGWEAAAKDR 300
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,651,840
Number of extensions: 1595624
Number of successful extensions: 9983
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9889
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 257
Effective length of database: 15,407,560
Effective search space: 3959742920
Effective search space used: 3959742920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009600
(1083 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927254.1| PREDICTED: single-strand selective monofunct... 503 e-143
Alignment gi|XP_003126251.2| PREDICTED: single-strand selective monofunct... 302 2e-82
>ref|XP_001927254.1| PREDICTED: single-strand selective monofunctional uracil DNA
glycosylase [Sus scrofa].
Length = 272
Score = 503 bits (1295), Expect = e-143
Identities = 243/260 (93%), Positives = 243/260 (93%)
Frame = +3
Query: 147 MAVPQAFPLGPLHEPAGALMEPQPSPRSLAEGFLEEELRLNGELKQLQFSEPVGLIYNPV 326
MAVPQAFPLGPLHEPAGALMEPQPSPRSLAEGFLEEELRLNGELKQLQFSEPVGLIYNPV
Sbjct: 1 MAVPQAFPLGPLHEPAGALMEPQPSPRSLAEGFLEEELRLNGELKQLQFSEPVGLIYNPV 60
Query: 327 EYAWEPHRSYVTRYCQGPKQVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIGGSVLTPP 506
EYAWEPHRSYVTRYCQGPKQVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIGGSVLTPP
Sbjct: 61 EYAWEPHRSYVTRYCQGPKQVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIGGSVLTPP 120
Query: 507 QEHPKRPVLGLECPQSEVSGARFWGFFRNLCGQPEVFFRHCFVHNLCPLLLLAPSGRNLT 686
QEHPKRPVLGLECPQSEVSGARFWGFFRNLCGQPEVFFRHCFVHNLCPLLLLAPSGRNLT
Sbjct: 121 QEHPKRPVLGLECPQSEVSGARFWGFFRNLCGQPEVFFRHCFVHNLCPLLLLAPSGRNLT 180
Query: 687 PAELPAKQREQLLGVCDAALCXXXXXXXXXXXXXXXXXAEQRARRALAGLMPEVQVEGLL 866
PAELPAKQREQLLGVCDAALC AEQRARRALAGLMPEVQVEGLL
Sbjct: 181 PAELPAKQREQLLGVCDAALCRQVQLLGVRLVVGVGRVAEQRARRALAGLMPEVQVEGLL 240
Query: 867 HPSPRSPQANKGWEAVAKER 926
HPSPRSPQANKGWEAVAKER
Sbjct: 241 HPSPRSPQANKGWEAVAKER 260
>ref|XP_003126251.2| PREDICTED: single-strand selective monofunctional uracil DNA
glycosylase-like [Sus scrofa].
Length = 186
Score = 302 bits (773), Expect = 2e-82
Identities = 147/166 (88%), Positives = 147/166 (88%)
Frame = +3
Query: 429 QTGVPFGEVSMVRDWLGIGGSVLTPPQEHPKRPVLGLECPQSEVSGARFWGFFRNLCGQP 608
Q VPFGEVSMVRDWLGIGGSVLTPPQEHPKRPVLGLECPQSEVSGARFWGFFRNLCGQP
Sbjct: 9 QLRVPFGEVSMVRDWLGIGGSVLTPPQEHPKRPVLGLECPQSEVSGARFWGFFRNLCGQP 68
Query: 609 EVFFRHCFVHNLCPLLLLAPSGRNLTPAELPAKQREQLLGVCDAALCXXXXXXXXXXXXX 788
EVFFRHCFVHNLCPLLLLAPSGRNLTPAELPAKQREQLLGVCDAALC
Sbjct: 69 EVFFRHCFVHNLCPLLLLAPSGRNLTPAELPAKQREQLLGVCDAALCRQVQLLGVRLVVG 128
Query: 789 XXXXAEQRARRALAGLMPEVQVEGLLHPSPRSPQANKGWEAVAKER 926
AEQRARRALAGLMPEVQVEGLLHPSPRSPQANKGWEAVAKER
Sbjct: 129 VGRVAEQRARRALAGLMPEVQVEGLLHPSPRSPQANKGWEAVAKER 174
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,674,551
Number of extensions: 1006251
Number of successful extensions: 6375
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6321
Number of HSP's successfully gapped: 2
Length of query: 361
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,854,232
Effective search space: 2310954552
Effective search space used: 2310954552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009600
(1083 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082161.2| single-strand selective monofunctional uracil D... 453 e-128
>ref|NP_082161.2| single-strand selective monofunctional uracil DNA glycosylase [Mus
musculus].
Length = 279
Score = 453 bits (1166), Expect = e-128
Identities = 215/260 (82%), Positives = 225/260 (86%)
Frame = +3
Query: 147 MAVPQAFPLGPLHEPAGALMEPQPSPRSLAEGFLEEELRLNGELKQLQFSEPVGLIYNPV 326
MA Q FPLGP HEPA ALMEP P RSLAEGFLEEELRLN EL QLQF EPVG+IYNPV
Sbjct: 1 MAASQTFPLGPTHEPASALMEPLPCTRSLAEGFLEEELRLNAELSQLQFPEPVGVIYNPV 60
Query: 327 EYAWEPHRSYVTRYCQGPKQVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIGGSVLTPP 506
+YAWEPHR+YVTRYCQGPK+VLFLGMNPGPFGMAQTGVPFGEV++VRDWLG+GG VLTPP
Sbjct: 61 DYAWEPHRNYVTRYCQGPKEVLFLGMNPGPFGMAQTGVPFGEVNVVRDWLGVGGPVLTPP 120
Query: 507 QEHPKRPVLGLECPQSEVSGARFWGFFRNLCGQPEVFFRHCFVHNLCPLLLLAPSGRNLT 686
QEHPKRPVLGLECPQSEVSGARFWGFFR LCGQP+VFFRHCFVHNLCPLL LAPSGRNLT
Sbjct: 121 QEHPKRPVLGLECPQSEVSGARFWGFFRTLCGQPQVFFRHCFVHNLCPLLFLAPSGRNLT 180
Query: 687 PAELPAKQREQLLGVCDAALCXXXXXXXXXXXXXXXXXAEQRARRALAGLMPEVQVEGLL 866
PAELPAKQREQLL +CDAALC AEQRARRALAGL PEVQVEGLL
Sbjct: 181 PAELPAKQREQLLSICDAALCRQVQLLGVRLVVGVGRLAEQRARRALAGLTPEVQVEGLL 240
Query: 867 HPSPRSPQANKGWEAVAKER 926
HPSPRS QANKGWEA A+ER
Sbjct: 241 HPSPRSAQANKGWEAAARER 260
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,927,171
Number of extensions: 1254884
Number of successful extensions: 6995
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6939
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 258
Effective length of database: 12,523,851
Effective search space: 3231153558
Effective search space used: 3231153558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009600
(1083 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230717.1| single-strand selective monofunctional uraci... 466 e-131
Alignment gi|NP_001230716.1| single-strand selective monofunctional uraci... 466 e-131
Alignment gi|NP_055126.1| single-strand selective monofunctional uracil D... 466 e-131
Alignment gi|NP_001230719.1| single-strand selective monofunctional uraci... 258 5e-69
Alignment gi|NP_001230720.1| single-strand selective monofunctional uraci... 258 5e-69
Alignment gi|NP_001230718.1| single-strand selective monofunctional uraci... 258 5e-69
>ref|NP_001230717.1| single-strand selective monofunctional uracil DNA glycosylase
isoform 1 [Homo sapiens].
Length = 270
Score = 466 bits (1199), Expect = e-131
Identities = 223/258 (86%), Positives = 230/258 (89%)
Frame = +3
Query: 153 VPQAFPLGPLHEPAGALMEPQPSPRSLAEGFLEEELRLNGELKQLQFSEPVGLIYNPVEY 332
+PQAF LG +HEPAGALMEPQP P SLAE FLEEELRLN EL QLQFSEPVG+IYNPVEY
Sbjct: 1 MPQAFLLGSIHEPAGALMEPQPCPGSLAESFLEEELRLNAELSQLQFSEPVGIIYNPVEY 60
Query: 333 AWEPHRSYVTRYCQGPKQVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIGGSVLTPPQE 512
AWEPHR+YVTRYCQGPK+VLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGI G VLTPPQE
Sbjct: 61 AWEPHRNYVTRYCQGPKEVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIVGPVLTPPQE 120
Query: 513 HPKRPVLGLECPQSEVSGARFWGFFRNLCGQPEVFFRHCFVHNLCPLLLLAPSGRNLTPA 692
HPKRPVLGLECPQSEVSGARFWGFFRNLCGQPEVFF HCFVHNLCPLL LAPSGRNLTPA
Sbjct: 121 HPKRPVLGLECPQSEVSGARFWGFFRNLCGQPEVFFHHCFVHNLCPLLFLAPSGRNLTPA 180
Query: 693 ELPAKQREQLLGVCDAALCXXXXXXXXXXXXXXXXXAEQRARRALAGLMPEVQVEGLLHP 872
ELPAKQREQLLG+CDAALC AEQRARRALAGLMPEVQVEGLLHP
Sbjct: 181 ELPAKQREQLLGICDAALCRQVQLLGVRLVVGVGRLAEQRARRALAGLMPEVQVEGLLHP 240
Query: 873 SPRSPQANKGWEAVAKER 926
SPR+PQANKGWEAVAKER
Sbjct: 241 SPRNPQANKGWEAVAKER 258
>ref|NP_001230716.1| single-strand selective monofunctional uracil DNA glycosylase
isoform 1 [Homo sapiens].
Length = 270
Score = 466 bits (1199), Expect = e-131
Identities = 223/258 (86%), Positives = 230/258 (89%)
Frame = +3
Query: 153 VPQAFPLGPLHEPAGALMEPQPSPRSLAEGFLEEELRLNGELKQLQFSEPVGLIYNPVEY 332
+PQAF LG +HEPAGALMEPQP P SLAE FLEEELRLN EL QLQFSEPVG+IYNPVEY
Sbjct: 1 MPQAFLLGSIHEPAGALMEPQPCPGSLAESFLEEELRLNAELSQLQFSEPVGIIYNPVEY 60
Query: 333 AWEPHRSYVTRYCQGPKQVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIGGSVLTPPQE 512
AWEPHR+YVTRYCQGPK+VLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGI G VLTPPQE
Sbjct: 61 AWEPHRNYVTRYCQGPKEVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIVGPVLTPPQE 120
Query: 513 HPKRPVLGLECPQSEVSGARFWGFFRNLCGQPEVFFRHCFVHNLCPLLLLAPSGRNLTPA 692
HPKRPVLGLECPQSEVSGARFWGFFRNLCGQPEVFF HCFVHNLCPLL LAPSGRNLTPA
Sbjct: 121 HPKRPVLGLECPQSEVSGARFWGFFRNLCGQPEVFFHHCFVHNLCPLLFLAPSGRNLTPA 180
Query: 693 ELPAKQREQLLGVCDAALCXXXXXXXXXXXXXXXXXAEQRARRALAGLMPEVQVEGLLHP 872
ELPAKQREQLLG+CDAALC AEQRARRALAGLMPEVQVEGLLHP
Sbjct: 181 ELPAKQREQLLGICDAALCRQVQLLGVRLVVGVGRLAEQRARRALAGLMPEVQVEGLLHP 240
Query: 873 SPRSPQANKGWEAVAKER 926
SPR+PQANKGWEAVAKER
Sbjct: 241 SPRNPQANKGWEAVAKER 258
>ref|NP_055126.1| single-strand selective monofunctional uracil DNA glycosylase
isoform 1 [Homo sapiens].
Length = 270
Score = 466 bits (1199), Expect = e-131
Identities = 223/258 (86%), Positives = 230/258 (89%)
Frame = +3
Query: 153 VPQAFPLGPLHEPAGALMEPQPSPRSLAEGFLEEELRLNGELKQLQFSEPVGLIYNPVEY 332
+PQAF LG +HEPAGALMEPQP P SLAE FLEEELRLN EL QLQFSEPVG+IYNPVEY
Sbjct: 1 MPQAFLLGSIHEPAGALMEPQPCPGSLAESFLEEELRLNAELSQLQFSEPVGIIYNPVEY 60
Query: 333 AWEPHRSYVTRYCQGPKQVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIGGSVLTPPQE 512
AWEPHR+YVTRYCQGPK+VLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGI G VLTPPQE
Sbjct: 61 AWEPHRNYVTRYCQGPKEVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIVGPVLTPPQE 120
Query: 513 HPKRPVLGLECPQSEVSGARFWGFFRNLCGQPEVFFRHCFVHNLCPLLLLAPSGRNLTPA 692
HPKRPVLGLECPQSEVSGARFWGFFRNLCGQPEVFF HCFVHNLCPLL LAPSGRNLTPA
Sbjct: 121 HPKRPVLGLECPQSEVSGARFWGFFRNLCGQPEVFFHHCFVHNLCPLLFLAPSGRNLTPA 180
Query: 693 ELPAKQREQLLGVCDAALCXXXXXXXXXXXXXXXXXAEQRARRALAGLMPEVQVEGLLHP 872
ELPAKQREQLLG+CDAALC AEQRARRALAGLMPEVQVEGLLHP
Sbjct: 181 ELPAKQREQLLGICDAALCRQVQLLGVRLVVGVGRLAEQRARRALAGLMPEVQVEGLLHP 240
Query: 873 SPRSPQANKGWEAVAKER 926
SPR+PQANKGWEAVAKER
Sbjct: 241 SPRNPQANKGWEAVAKER 258
>ref|NP_001230719.1| single-strand selective monofunctional uracil DNA glycosylase
isoform 2 [Homo sapiens].
Length = 177
Score = 258 bits (660), Expect = 5e-69
Identities = 121/135 (89%), Positives = 126/135 (93%)
Frame = +3
Query: 153 VPQAFPLGPLHEPAGALMEPQPSPRSLAEGFLEEELRLNGELKQLQFSEPVGLIYNPVEY 332
+PQAF LG +HEPAGALMEPQP P SLAE FLEEELRLN EL QLQFSEPVG+IYNPVEY
Sbjct: 1 MPQAFLLGSIHEPAGALMEPQPCPGSLAESFLEEELRLNAELSQLQFSEPVGIIYNPVEY 60
Query: 333 AWEPHRSYVTRYCQGPKQVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIGGSVLTPPQE 512
AWEPHR+YVTRYCQGPK+VLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGI G VLTPPQE
Sbjct: 61 AWEPHRNYVTRYCQGPKEVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIVGPVLTPPQE 120
Query: 513 HPKRPVLGLECPQSE 557
HPKRPVLGLECPQSE
Sbjct: 121 HPKRPVLGLECPQSE 135
>ref|NP_001230720.1| single-strand selective monofunctional uracil DNA glycosylase
isoform 2 [Homo sapiens].
Length = 177
Score = 258 bits (660), Expect = 5e-69
Identities = 121/135 (89%), Positives = 126/135 (93%)
Frame = +3
Query: 153 VPQAFPLGPLHEPAGALMEPQPSPRSLAEGFLEEELRLNGELKQLQFSEPVGLIYNPVEY 332
+PQAF LG +HEPAGALMEPQP P SLAE FLEEELRLN EL QLQFSEPVG+IYNPVEY
Sbjct: 1 MPQAFLLGSIHEPAGALMEPQPCPGSLAESFLEEELRLNAELSQLQFSEPVGIIYNPVEY 60
Query: 333 AWEPHRSYVTRYCQGPKQVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIGGSVLTPPQE 512
AWEPHR+YVTRYCQGPK+VLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGI G VLTPPQE
Sbjct: 61 AWEPHRNYVTRYCQGPKEVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIVGPVLTPPQE 120
Query: 513 HPKRPVLGLECPQSE 557
HPKRPVLGLECPQSE
Sbjct: 121 HPKRPVLGLECPQSE 135
>ref|NP_001230718.1| single-strand selective monofunctional uracil DNA glycosylase
isoform 2 [Homo sapiens].
Length = 177
Score = 258 bits (660), Expect = 5e-69
Identities = 121/135 (89%), Positives = 126/135 (93%)
Frame = +3
Query: 153 VPQAFPLGPLHEPAGALMEPQPSPRSLAEGFLEEELRLNGELKQLQFSEPVGLIYNPVEY 332
+PQAF LG +HEPAGALMEPQP P SLAE FLEEELRLN EL QLQFSEPVG+IYNPVEY
Sbjct: 1 MPQAFLLGSIHEPAGALMEPQPCPGSLAESFLEEELRLNAELSQLQFSEPVGIIYNPVEY 60
Query: 333 AWEPHRSYVTRYCQGPKQVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIGGSVLTPPQE 512
AWEPHR+YVTRYCQGPK+VLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGI G VLTPPQE
Sbjct: 61 AWEPHRNYVTRYCQGPKEVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIVGPVLTPPQE 120
Query: 513 HPKRPVLGLECPQSE 557
HPKRPVLGLECPQSE
Sbjct: 121 HPKRPVLGLECPQSE 135
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,522,923
Number of extensions: 1543673
Number of successful extensions: 9235
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 9151
Number of HSP's successfully gapped: 6
Length of query: 361
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 257
Effective length of database: 14,868,908
Effective search space: 3821309356
Effective search space used: 3821309356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009600
(1083 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 1283 0.0
Sscrofa_Chr02 161 1e-36
>Sscrofa_Chr05
|| Length = 111506441
Score = 1283 bits (647), Expect = 0.0
Identities = 647/647 (100%)
Strand = Plus / Plus
Query: 437 ggtgccctttggggaagtgagtatggtccgggactggttaggcatcgggggctctgtgct 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20047567 ggtgccctttggggaagtgagtatggtccgggactggttaggcatcgggggctctgtgct 20047626
Query: 497 gacccctccccaagagcaccccaagcgaccagtgctgggactggagtgccctcagtccga 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20047627 gacccctccccaagagcaccccaagcgaccagtgctgggactggagtgccctcagtccga 20047686
Query: 557 ggtaagtggtgcccggttctggggctttttccggaacctctgtggacagcccgaggtctt 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20047687 ggtaagtggtgcccggttctggggctttttccggaacctctgtggacagcccgaggtctt 20047746
Query: 617 cttccgtcactgtttcgtccacaacctgtgtcctctgctcctcctggcccccagtgggcg 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20047747 cttccgtcactgtttcgtccacaacctgtgtcctctgctcctcctggcccccagtgggcg 20047806
Query: 677 caatctcacccctgccgaactgccggccaagcagcgagaacagctcctcggggtgtgtga 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20047807 caatctcacccctgccgaactgccggccaagcagcgagaacagctcctcggggtgtgtga 20047866
Query: 737 cgcagcgctttgccggcaggtgcagctgctgggggtgcggctggtggtgggcgtggggcg 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20047867 cgcagcgctttgccggcaggtgcagctgctgggggtgcggctggtggtgggcgtggggcg 20047926
Query: 797 cgtggccgagcagcgggcacggcgggctctggccggcctgatgcctgaggtccaggtgga 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20047927 cgtggccgagcagcgggcacggcgggctctggccggcctgatgcctgaggtccaggtgga 20047986
Query: 857 ggggctcctgcacccctcccctcgtagcccacaggccaacaagggctgggaggcagtggc 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20047987 ggggctcctgcacccctcccctcgtagcccacaggccaacaagggctgggaggcagtggc 20048046
Query: 917 caaggagagactgaatgagctggggctgctgccgctgctgacgaaatgagtgcccctgct 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20048047 caaggagagactgaatgagctggggctgctgccgctgctgacgaaatgagtgcccctgct 20048106
Query: 977 gccggcacaggacgcgttcaagacccccagggtcgttctggacaagcagatgaccacgcg 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20048107 gccggcacaggacgcgttcaagacccccagggtcgttctggacaagcagatgaccacgcg 20048166
Query: 1037 cctcctggaccggagcgacaaagttcccctccgctccctggttgctg 1083
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20048167 cctcctggaccggagcgacaaagttcccctccgctccctggttgctg 20048213
Score = 611 bits (308), Expect = e-172
Identities = 308/308 (100%)
Strand = Plus / Plus
Query: 132 ccaggtgacagtggcatggctgtgccccaggctttcccactggggcccctccacgaacct 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20046234 ccaggtgacagtggcatggctgtgccccaggctttcccactggggcccctccacgaacct 20046293
Query: 192 gcaggcgcccttatggagccccagccctcccctcgaagtttggctgagggcttcctggag 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20046294 gcaggcgcccttatggagccccagccctcccctcgaagtttggctgagggcttcctggag 20046353
Query: 252 gaggagctccggcttaatggtgagctgaagcaactacagttttccgagcctgtgggcctc 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20046354 gaggagctccggcttaatggtgagctgaagcaactacagttttccgagcctgtgggcctc 20046413
Query: 312 atctacaatcctgtggagtacgcctgggagccacatcgcagctacgtcacccgctactgc 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20046414 atctacaatcctgtggagtacgcctgggagccacatcgcagctacgtcacccgctactgc 20046473
Query: 372 cagggccccaagcaagtgctcttcttgggcatgaacccaggaccctttggcatggcccag 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20046474 cagggccccaagcaagtgctcttcttgggcatgaacccaggaccctttggcatggcccag 20046533
Query: 432 actggggt 439
||||||||
Sbjct: 20046534 actggggt 20046541
Score = 71.9 bits (36), Expect = 7e-10
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 102 aaggaaccggaagccggatggggcaccggaccaggt 137
||||||||||||||||||||||||||||||||||||
Sbjct: 20042537 aaggaaccggaagccggatggggcaccggaccaggt 20042572
>Sscrofa_Chr02
|| Length = 162569375
Score = 161 bits (81), Expect = 1e-36
Identities = 95/102 (93%)
Strand = Plus / Plus
Query: 1 gtatgtaaccggttatttttacttgaagtattttggggtggtcttaacagggaagagggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5809102 gtatgtaaccggttatttttacttgaagtattttggggtggtcttaacagggaagagggt 5809161
Query: 61 gggggagaaaatgnnnnnnnctaagactttccacagatgcta 102
||||||||||||| ||||||||||||||||||||||
Sbjct: 5809162 gggggagaaaatgtttttttctaagactttccacagatgcta 5809203
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,759,995
Number of extensions: 678
Number of successful extensions: 678
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 677
Number of HSP's successfully gapped: 4
Length of query: 1083
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1062
Effective length of database: 2,808,413,156
Effective search space: 2982534771672
Effective search space used: 2982534771672
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)