Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009609
(1052 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068691.1| cell cycle control protein 50A [Bos taurus]. 518 e-147
Alignment gi|XP_002691086.1| PREDICTED: transmembrane protein 30B-like [B... 238 7e-63
Alignment gi|XP_586437.2| PREDICTED: transmembrane protein 30B [Bos tauru... 238 7e-63
Alignment gi|NP_001033239.1| cell cycle control protein 50C [Bos taurus]. 218 7e-57
>ref|NP_001068691.1| cell cycle control protein 50A [Bos taurus].
Length = 361
Score = 518 bits (1335), Expect = e-147
Identities = 249/299 (83%), Positives = 259/299 (86%), Gaps = 5/299 (1%)
Frame = +3
Query: 132 MAMNYNAKDEVDGGPPCAAGGTAKNRRPDNTAFKQQRLPAWQPILTAGTVLPTXXXXXXX 311
MAMNYNAKDEVDGGPPC GGTAK RRPDNTAFKQQRLPAWQPILTAGTVLPT
Sbjct: 1 MAMNYNAKDEVDGGPPCPPGGTAKTRRPDNTAFKQQRLPAWQPILTAGTVLPTFFIIGLI 60
Query: 312 XXXXXXXXXVTSNNIREIEIDYTGTEPSSPCNKCLSPNVTSCICTINFTLEQSFEGNVFM 491
VTSNNIREIEIDYTGT+PSSPCNKCLSPNVT C+CTINFTLEQSFEGNVFM
Sbjct: 61 FIPIGIGIFVTSNNIREIEIDYTGTDPSSPCNKCLSPNVTPCVCTINFTLEQSFEGNVFM 120
Query: 492 YYGLSNFYQNHRRYVKSRDDSQLNGDHGALLNPSKECEPYRRSEDKPIAPCGAIANSMFN 671
YYGLSNFYQNHRRYVKSRDD QLNGD ALLNPSKECEPYRR+EDKPIAPCGAIANSMFN
Sbjct: 121 YYGLSNFYQNHRRYVKSRDDGQLNGDPSALLNPSKECEPYRRNEDKPIAPCGAIANSMFN 180
Query: 672 DTLELYLIGNESESTPIPLKKKGIAWWTDKNVKFRNPSGDIPLEERFKDTAKPVNWVKPV 851
DTLEL+ +GN S+ TPIPLKKKGIAWWTDKNVKFRNP G PLEERFK T KPVNWVKPV
Sbjct: 181 DTLELFQVGNASDLTPIPLKKKGIAWWTDKNVKFRNPPGTDPLEERFKGTTKPVNWVKPV 240
Query: 852 YLLDSDQDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPT-----YQLDDTSEY 1013
Y+LDSD+DNNGFINEDFIVWMRTAALPTFRKLYRLIERK+DLHPT Y L+ T Y
Sbjct: 241 YMLDSDEDNNGFINEDFIVWMRTAALPTFRKLYRLIERKNDLHPTLPAGRYYLNITYNY 299
>ref|XP_002691086.1| PREDICTED: transmembrane protein 30B-like [Bos taurus].
Length = 353
Score = 238 bits (607), Expect = 7e-63
Identities = 127/262 (48%), Positives = 161/262 (61%), Gaps = 10/262 (3%)
Frame = +3
Query: 210 RPDNTAFKQQRLPAWQPILTAGTVLPTXXXXXXXXXXXXXXXXVTSNNIREIEIDYTGTE 389
+PDNTAF QQRLPAW P+L+A LP +SN I+E+ DYTG
Sbjct: 12 QPDNTAFTQQRLPAWHPLLSASITLPLFFCAGLAFIGLGLGLYYSSNGIKELAYDYTGDS 71
Query: 390 PSSPCNKCLSPNV-----TSCICTINFTLEQSFEGNVFMYYGLSNFYQNHRRYVKSRDDS 554
+ C+ C C C F+L + F+G V++YY L+NFYQN+RRY SRDDS
Sbjct: 72 GTGNCSVCAMAGQGRAPPPPCSCAWYFSLPELFQGPVYLYYELTNFYQNNRRYGVSRDDS 131
Query: 555 QLNGDHGALLNPSKECEPYRRSE-DKPIAPCGAIANSMFNDTLELYLIGNESES-TPIPL 728
QL+G +L +P EC PY+ S PIAPCGAIANS+FND+ L+ + +PL
Sbjct: 132 QLSGLPSSLRHPVNECAPYQYSAAGLPIAPCGAIANSLFNDSFSLWHQRQPNGPYVEVPL 191
Query: 729 KKKGIAWWTDKNVKFRNP---SGDIPLEERFKDTAKPVNWVKPVYLLDSDQDNNGFINED 899
+ GIAWWTD +VKFRNP +G + L F+ TA P NW +PVY L D +N GFIN+D
Sbjct: 192 DRTGIAWWTDYHVKFRNPPLVNGSLALA--FQGTAPPPNWHRPVYELSPDPNNTGFINQD 249
Query: 900 FIVWMRTAALPTFRKLYRLIER 965
F+VWMRTAALPTFRKLY I +
Sbjct: 250 FVVWMRTAALPTFRKLYARIRQ 271
>ref|XP_586437.2| PREDICTED: transmembrane protein 30B [Bos taurus].
Length = 353
Score = 238 bits (607), Expect = 7e-63
Identities = 127/262 (48%), Positives = 161/262 (61%), Gaps = 10/262 (3%)
Frame = +3
Query: 210 RPDNTAFKQQRLPAWQPILTAGTVLPTXXXXXXXXXXXXXXXXVTSNNIREIEIDYTGTE 389
+PDNTAF QQRLPAW P+L+A LP +SN I+E+ DYTG
Sbjct: 12 QPDNTAFTQQRLPAWHPLLSASITLPLFFCAGLAFIGLGLGLYYSSNGIKELAYDYTGDS 71
Query: 390 PSSPCNKCLSPNV-----TSCICTINFTLEQSFEGNVFMYYGLSNFYQNHRRYVKSRDDS 554
+ C+ C C C F+L + F+G V++YY L+NFYQN+RRY SRDDS
Sbjct: 72 GTGNCSVCAMAGQGRAPPPPCSCAWYFSLPELFQGPVYLYYELTNFYQNNRRYGVSRDDS 131
Query: 555 QLNGDHGALLNPSKECEPYRRSE-DKPIAPCGAIANSMFNDTLELYLIGNESES-TPIPL 728
QL+G +L +P EC PY+ S PIAPCGAIANS+FND+ L+ + +PL
Sbjct: 132 QLSGLPSSLRHPVNECAPYQYSAAGLPIAPCGAIANSLFNDSFSLWHQRQPNGPYVEVPL 191
Query: 729 KKKGIAWWTDKNVKFRNP---SGDIPLEERFKDTAKPVNWVKPVYLLDSDQDNNGFINED 899
+ GIAWWTD +VKFRNP +G + L F+ TA P NW +PVY L D +N GFIN+D
Sbjct: 192 DRTGIAWWTDYHVKFRNPPLVNGSLALA--FQGTAPPPNWHRPVYELSPDPNNTGFINQD 249
Query: 900 FIVWMRTAALPTFRKLYRLIER 965
F+VWMRTAALPTFRKLY I +
Sbjct: 250 FVVWMRTAALPTFRKLYARIRQ 271
>ref|NP_001033239.1| cell cycle control protein 50C [Bos taurus].
Length = 343
Score = 218 bits (555), Expect = 7e-57
Identities = 125/261 (47%), Positives = 162/261 (62%), Gaps = 6/261 (2%)
Frame = +3
Query: 201 KNRRPDNTAFKQQRLPAWQPILTAGTVLPTXXXXXXXXXXXXXXXXVTSNNIREIEIDYT 380
++R PDNTA KQQ+LPA++ LTA +L +++ +I+E+EI+YT
Sbjct: 9 ESRLPDNTAVKQQQLPAFRLQLTASEILSGFFAIGLFCLGMGIILLLSAKSIKEVEINYT 68
Query: 381 GTEPSSPCNKCLSPNVTS----CICTINFTLEQSFEGNVFMYYGLSNFYQNHRRYVKSRD 548
E + C K L T+ C C+I+F L Q EGNV++YY L FYQN RY+ SR
Sbjct: 69 --EKCATCAK-LREEATNFDKECNCSISFYLPQKMEGNVYLYYKLYGFYQNLYRYILSRS 125
Query: 549 DSQLNGDHGALLNPSKECEPYRRSEDK-PIAPCGAIANSMFNDTLELYLIGNESESTPIP 725
+ QL G A + + C P+R S++ PIAPCGAIANSMFNDT+ L+ N S +P
Sbjct: 126 NIQLVG---ADVKDVRNCAPFRTSDNGLPIAPCGAIANSMFNDTIVLWYNFNSSTHIRVP 182
Query: 726 LKKKGIAWWTDKNVKFRNPSGDIPLEERFKDTAKPVNWVKPVYLLD-SDQDNNGFINEDF 902
+ + AWWTDK VKF+NP+ L F TAKP NW KPVY LD +D NNGFIN+DF
Sbjct: 183 MVRTETAWWTDKYVKFQNPAFQ-NLSSAFAGTAKPPNWPKPVYELDENDPGNNGFINDDF 241
Query: 903 IVWMRTAALPTFRKLYRLIER 965
IVWMRTAA P F+KLYR + R
Sbjct: 242 IVWMRTAAFPNFKKLYRRLHR 262
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,763,370
Number of extensions: 829736
Number of successful extensions: 2667
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2644
Number of HSP's successfully gapped: 4
Length of query: 350
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,273,310
Effective search space: 3525507570
Effective search space used: 3525507570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009609
(1052 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532208.2| PREDICTED: similar to transmembrane protein 30A... 525 e-149
Alignment gi|XP_867464.1| PREDICTED: similar to transmembrane protein 30A... 512 e-145
Alignment gi|XP_867455.1| PREDICTED: similar to transmembrane protein 30A... 511 e-145
Alignment gi|XP_867475.1| PREDICTED: similar to transmembrane protein 30A... 432 e-121
Alignment gi|XP_545073.2| PREDICTED: similar to transmembrane protein 30A... 209 3e-54
Alignment gi|XP_547843.2| PREDICTED: similar to transmembrane protein 30B... 142 4e-34
>ref|XP_532208.2| PREDICTED: similar to transmembrane protein 30A isoform 1 [Canis
familiaris].
Length = 361
Score = 525 bits (1351), Expect = e-149
Identities = 254/299 (84%), Positives = 261/299 (87%), Gaps = 5/299 (1%)
Frame = +3
Query: 132 MAMNYNAKDEVDGGPPCAAGGTAKNRRPDNTAFKQQRLPAWQPILTAGTVLPTXXXXXXX 311
MAMNYNAKDEVDGGPPCA G TAKNRRPDNTAFKQQRLPAWQPILTAGTVLPT
Sbjct: 1 MAMNYNAKDEVDGGPPCAPGATAKNRRPDNTAFKQQRLPAWQPILTAGTVLPTFFIIGLI 60
Query: 312 XXXXXXXXXVTSNNIREIEIDYTGTEPSSPCNKCLSPNVTSCICTINFTLEQSFEGNVFM 491
VTSNNIREIEIDYTGT+PSSPCNKCLSPNVT CICTINFTLEQSFEGNVFM
Sbjct: 61 FIPIGIGIFVTSNNIREIEIDYTGTDPSSPCNKCLSPNVTPCICTINFTLEQSFEGNVFM 120
Query: 492 YYGLSNFYQNHRRYVKSRDDSQLNGDHGALLNPSKECEPYRRSEDKPIAPCGAIANSMFN 671
YYGLSNFYQNHRRYVKSRDDSQLNGD GALLNPSKECEPYRR+EDKPIAPCGAIANSMFN
Sbjct: 121 YYGLSNFYQNHRRYVKSRDDSQLNGDSGALLNPSKECEPYRRNEDKPIAPCGAIANSMFN 180
Query: 672 DTLELYLIGNESESTPIPLKKKGIAWWTDKNVKFRNPSGDIPLEERFKDTAKPVNWVKPV 851
DTLEL+L+GNES TPIPLKKKGIAWWTDKNVKFRNP GD LEERFK T PVNWVKPV
Sbjct: 181 DTLELFLVGNESYPTPIPLKKKGIAWWTDKNVKFRNPPGDQSLEERFKGTTNPVNWVKPV 240
Query: 852 YLLDSDQDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPT-----YQLDDTSEY 1013
Y+LDS+ DNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPT Y L+ T Y
Sbjct: 241 YMLDSEPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYYLNITYNY 299
>ref|XP_867464.1| PREDICTED: similar to transmembrane protein 30A isoform 3 [Canis
familiaris].
Length = 359
Score = 512 bits (1318), Expect = e-145
Identities = 250/299 (83%), Positives = 257/299 (85%), Gaps = 5/299 (1%)
Frame = +3
Query: 132 MAMNYNAKDEVDGGPPCAAGGTAKNRRPDNTAFKQQRLPAWQPILTAGTVLPTXXXXXXX 311
MAMNYNAKDEVDGGPPCA G TAKNRRPDNTAFKQQRLPAWQPILTAGTVLPT
Sbjct: 1 MAMNYNAKDEVDGGPPCAPGATAKNRRPDNTAFKQQRLPAWQPILTAGTVLPTFFIIGLI 60
Query: 312 XXXXXXXXXVTSNNIREIEIDYTGTEPSSPCNKCLSPNVTSCICTINFTLEQSFEGNVFM 491
VTSNNIREIEIDYTGT+PSSPCNKCLSPNVT CICTINFTLEQSFEGNVFM
Sbjct: 61 FIPIGIGIFVTSNNIREIEIDYTGTDPSSPCNKCLSPNVTPCICTINFTLEQSFEGNVFM 120
Query: 492 YYGLSNFYQNHRRYVKSRDDSQLNGDHGALLNPSKECEPYRRSEDKPIAPCGAIANSMFN 671
YYGLSNFYQNHRRYVKSRDDSQLNGD NPSKECEPYRR+EDKPIAPCGAIANSMFN
Sbjct: 121 YYGLSNFYQNHRRYVKSRDDSQLNGDSDQ--NPSKECEPYRRNEDKPIAPCGAIANSMFN 178
Query: 672 DTLELYLIGNESESTPIPLKKKGIAWWTDKNVKFRNPSGDIPLEERFKDTAKPVNWVKPV 851
DTLEL+L+GNES TPIPLKKKGIAWWTDKNVKFRNP GD LEERFK T PVNWVKPV
Sbjct: 179 DTLELFLVGNESYPTPIPLKKKGIAWWTDKNVKFRNPPGDQSLEERFKGTTNPVNWVKPV 238
Query: 852 YLLDSDQDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPT-----YQLDDTSEY 1013
Y+LDS+ DNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPT Y L+ T Y
Sbjct: 239 YMLDSEPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYYLNITYNY 297
>ref|XP_867455.1| PREDICTED: similar to transmembrane protein 30A isoform 2 [Canis
familiaris].
Length = 348
Score = 511 bits (1316), Expect = e-145
Identities = 245/286 (85%), Positives = 251/286 (87%)
Frame = +3
Query: 132 MAMNYNAKDEVDGGPPCAAGGTAKNRRPDNTAFKQQRLPAWQPILTAGTVLPTXXXXXXX 311
MAMNYNAKDEVDGGPPCA G TAKNRRPDNTAFKQQRLPAWQPILTAGTVLPT
Sbjct: 1 MAMNYNAKDEVDGGPPCAPGATAKNRRPDNTAFKQQRLPAWQPILTAGTVLPTFFIIGLI 60
Query: 312 XXXXXXXXXVTSNNIREIEIDYTGTEPSSPCNKCLSPNVTSCICTINFTLEQSFEGNVFM 491
VTSNNIREIEIDYTGT+PSSPCNKCLSPNVT CICTINFTLEQSFEGNVFM
Sbjct: 61 FIPIGIGIFVTSNNIREIEIDYTGTDPSSPCNKCLSPNVTPCICTINFTLEQSFEGNVFM 120
Query: 492 YYGLSNFYQNHRRYVKSRDDSQLNGDHGALLNPSKECEPYRRSEDKPIAPCGAIANSMFN 671
YYGLSNFYQNHRRYVKSRDDSQLNGD GALLNPSKECEPYRR+EDKPIAPCGAIANSMFN
Sbjct: 121 YYGLSNFYQNHRRYVKSRDDSQLNGDSGALLNPSKECEPYRRNEDKPIAPCGAIANSMFN 180
Query: 672 DTLELYLIGNESESTPIPLKKKGIAWWTDKNVKFRNPSGDIPLEERFKDTAKPVNWVKPV 851
DTLEL+L+GNES TPIPLKKKGIAWWTDKNVKFRNP GD LEERFK T PVNWVKPV
Sbjct: 181 DTLELFLVGNESYPTPIPLKKKGIAWWTDKNVKFRNPPGDQSLEERFKGTTNPVNWVKPV 240
Query: 852 YLLDSDQDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTY 989
Y+LDS+ DNNGFINEDFIVWMRTAALPTFRKLYRLIERK Y
Sbjct: 241 YMLDSEPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKKHRQAYY 286
>ref|XP_867475.1| PREDICTED: similar to transmembrane protein 30A isoform 4 [Canis
familiaris].
Length = 325
Score = 432 bits (1112), Expect = e-121
Identities = 220/299 (73%), Positives = 226/299 (75%), Gaps = 5/299 (1%)
Frame = +3
Query: 132 MAMNYNAKDEVDGGPPCAAGGTAKNRRPDNTAFKQQRLPAWQPILTAGTVLPTXXXXXXX 311
MAMNYNAKDEVDGGPPCA G TAKNRRPDNTAFKQQRLPAWQPILTAGTVLPT
Sbjct: 1 MAMNYNAKDEVDGGPPCAPGATAKNRRPDNTAFKQQRLPAWQPILTAGTVLPTFFIIGLI 60
Query: 312 XXXXXXXXXVTSNNIREIEIDYTGTEPSSPCNKCLSPNVTSCICTINFTLEQSFEGNVFM 491
VTSNNIREIE GNVFM
Sbjct: 61 FIPIGIGIFVTSNNIREIE------------------------------------GNVFM 84
Query: 492 YYGLSNFYQNHRRYVKSRDDSQLNGDHGALLNPSKECEPYRRSEDKPIAPCGAIANSMFN 671
YYGLSNFYQNHRRYVKSRDDSQLNGD GALLNPSKECEPYRR+EDKPIAPCGAIANSMFN
Sbjct: 85 YYGLSNFYQNHRRYVKSRDDSQLNGDSGALLNPSKECEPYRRNEDKPIAPCGAIANSMFN 144
Query: 672 DTLELYLIGNESESTPIPLKKKGIAWWTDKNVKFRNPSGDIPLEERFKDTAKPVNWVKPV 851
DTLEL+L+GNES TPIPLKKKGIAWWTDKNVKFRNP GD LEERFK T PVNWVKPV
Sbjct: 145 DTLELFLVGNESYPTPIPLKKKGIAWWTDKNVKFRNPPGDQSLEERFKGTTNPVNWVKPV 204
Query: 852 YLLDSDQDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPT-----YQLDDTSEY 1013
Y+LDS+ DNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPT Y L+ T Y
Sbjct: 205 YMLDSEPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYYLNITYNY 263
>ref|XP_545073.2| PREDICTED: similar to transmembrane protein 30A [Canis familiaris].
Length = 352
Score = 209 bits (533), Expect = 3e-54
Identities = 123/263 (46%), Positives = 155/263 (58%), Gaps = 8/263 (3%)
Frame = +3
Query: 201 KNRRPDNTAFKQQRLPAWQPILTAGTVLPTXXXXXXXXXXXXXXXXVTSNNIREIEIDYT 380
++R PDNTA KQQ+LPA++ L+A VL +++ +I+EIE+ YT
Sbjct: 12 QSRLPDNTALKQQQLPAYRLQLSATGVLSGFFAAGAFCLGMGIILILSAKSIKEIEVKYT 71
Query: 381 GTEPSSPCNKC--LSPNVTS----CICTINFTLEQSFEGNVFMYYGLSNFYQNHRRYVKS 542
C C L + T+ C C+I F L ++ +GNV+MYY L FYQN +Y+ S
Sbjct: 72 KI-----CANCAELREDATNFDKECTCSIPFYLSETMKGNVYMYYKLYGFYQNLYQYILS 126
Query: 543 RDDSQLNGDHGALLNPSKECEPYRRSED-KPIAPCGAIANSMFNDTLELYLIGNESESTP 719
R +SQL G L C P+ S D PIAPCGAIANS+FNDT+ L N S
Sbjct: 127 RSNSQLLGTD---LKDVGNCAPFSNSHDGTPIAPCGAIANSIFNDTIILSYNLNSSIPIE 183
Query: 720 IPLKKKGIAWWTDKNVKFRNPSGDIPLEERFKDTAKPVNWVKPVYLLD-SDQDNNGFINE 896
+P+ K I WWTDK VKF+NPS I L F T KP W KPVY LD D NNGF+N+
Sbjct: 184 VPMLKSKITWWTDKYVKFQNPS-SINLSSAFAGTTKPPYWSKPVYELDEEDPGNNGFLND 242
Query: 897 DFIVWMRTAALPTFRKLYRLIER 965
DFIVWMRTAA PTF+KLYR + R
Sbjct: 243 DFIVWMRTAAFPTFKKLYRRLNR 265
>ref|XP_547843.2| PREDICTED: similar to transmembrane protein 30B [Canis familiaris].
Length = 386
Score = 142 bits (359), Expect = 4e-34
Identities = 73/135 (54%), Positives = 91/135 (67%), Gaps = 5/135 (3%)
Frame = +3
Query: 576 ALLNPSKECEPY-RRSEDKPIAPCGAIANSMFNDTLELYLIGNESES-TPIPLKKKGIAW 749
A+ +P+ EC PY RR+ PIAPCGAIANS+FND+ L+ +PL + GIAW
Sbjct: 172 AVRHPTNECAPYQRRASGLPIAPCGAIANSLFNDSFSLWHRRRAGGPYVEVPLDRTGIAW 231
Query: 750 WTDKNVKFRNP---SGDIPLEERFKDTAKPVNWVKPVYLLDSDQDNNGFINEDFIVWMRT 920
WTD +VKFRNP +G + L F TA P NW +PVY L D +N GF+N+DF+VWMRT
Sbjct: 232 WTDCHVKFRNPPLVNGSLALA--FHGTAPPPNWPRPVYALSPDPNNTGFVNQDFVVWMRT 289
Query: 921 AALPTFRKLYRLIER 965
AALPTFRKLY I +
Sbjct: 290 AALPTFRKLYARIRQ 304
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,288,163
Number of extensions: 862125
Number of successful extensions: 2937
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2918
Number of HSP's successfully gapped: 7
Length of query: 350
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 246
Effective length of database: 15,407,560
Effective search space: 3790259760
Effective search space used: 3790259760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009609
(1052 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353353.1| PREDICTED: cell cycle control protein 50A [S... 230 1e-60
Alignment gi|XP_003132760.2| PREDICTED: cell cycle control protein 50C-li... 169 2e-42
>ref|XP_003353353.1| PREDICTED: cell cycle control protein 50A [Sus scrofa].
Length = 184
Score = 230 bits (586), Expect = 1e-60
Identities = 112/122 (91%), Positives = 113/122 (92%), Gaps = 5/122 (4%)
Frame = +3
Query: 663 MFNDTLELYLIGNESESTPIPLKKKGIAWWTDKNVKFRNPSGDIPLEERFKDTAKPVNWV 842
MFNDTLELYLIGNESESTPIPLKKKGIAWWTDKNVKFRNPSGDIPLEERFKDTAKPVNWV
Sbjct: 1 MFNDTLELYLIGNESESTPIPLKKKGIAWWTDKNVKFRNPSGDIPLEERFKDTAKPVNWV 60
Query: 843 KPVYLLDSDQDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPT-----YQLDDTS 1007
KPVYLLDSDQDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPT Y L+ T
Sbjct: 61 KPVYLLDSDQDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYYLNITY 120
Query: 1008 EY 1013
Y
Sbjct: 121 NY 122
>ref|XP_003132760.2| PREDICTED: cell cycle control protein 50C-like [Sus scrofa].
Length = 260
Score = 169 bits (429), Expect = 2e-42
Identities = 90/165 (54%), Positives = 106/165 (64%), Gaps = 2/165 (1%)
Frame = +3
Query: 477 GNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDHGALLNPSKECEPYRRSED-KPIAPCGAI 653
GNV+MYY L FYQN RY+ SR +SQL G + C P++ S + PIAPCGAI
Sbjct: 19 GNVYMYYKLYGFYQNLYRYILSRSNSQLVGTD---IKDVTNCSPFKNSPNGTPIAPCGAI 75
Query: 654 ANSMFNDTLELYLIGNESESTPIPLKKKGIAWWTDKNVKFRNPSGDIPLEERFKDTAKPV 833
ANS+FNDT+ L N S +P+ + GI WWTDK VKF+NPS L F T KP
Sbjct: 76 ANSIFNDTIILSYNLNSSIHIKVPMLRSGITWWTDKYVKFQNPSSH-NLSSAFAGTTKPP 134
Query: 834 NWVKPVYLLD-SDQDNNGFINEDFIVWMRTAALPTFRKLYRLIER 965
W KP Y LD D NNGFIN+DFIVWMRTAA PTF+KLYR + R
Sbjct: 135 YWPKPAYELDEEDPGNNGFINDDFIVWMRTAAFPTFKKLYRRLHR 179
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,670,149
Number of extensions: 530610
Number of successful extensions: 1752
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1742
Number of HSP's successfully gapped: 2
Length of query: 350
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 250
Effective length of database: 8,854,232
Effective search space: 2213558000
Effective search space used: 2213558000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009609
(1052 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598479.1| cell cycle control protein 50A [Mus musculus]. 484 e-137
Alignment gi|NP_848830.1| cell cycle control protein 50B [Mus musculus]. 255 4e-68
Alignment gi|NP_081927.1| cell cycle control protein 50C [Mus musculus]. 206 2e-53
>ref|NP_598479.1| cell cycle control protein 50A [Mus musculus].
Length = 364
Score = 484 bits (1247), Expect = e-137
Identities = 241/303 (79%), Positives = 250/303 (82%), Gaps = 4/303 (1%)
Frame = +3
Query: 132 MAMNYNAKDEVDGGPPCAAGGTAKNRRPDNTAFKQQRLPAWQPILTAGTVLPTXXXXXXX 311
MAMNY+AKDEVDGGP GG AK RRPDNTAFKQQRLPAWQPILTAGTVLPT
Sbjct: 1 MAMNYSAKDEVDGGPAGPPGGAAKTRRPDNTAFKQQRLPAWQPILTAGTVLPTFFIIGLI 60
Query: 312 XXXXXXXXXVTSNNIREIEIDYTGTEPSSPCNKCLSPNVTSCICTINFTLEQSFEGNVFM 491
VTSNNIREIEIDYTGTEPSSPCNKCLSPNVTSC CTINFTL+QSFEGNVFM
Sbjct: 61 FIPIGIGIFVTSNNIREIEIDYTGTEPSSPCNKCLSPNVTSCACTINFTLKQSFEGNVFM 120
Query: 492 YYGLSNFYQNHRRYVKSRDDSQLNGDHGALLNPSKECEPYRRSEDKPIAPCGAIANSMFN 671
YYGLSNFYQNHRRYVKSRDDSQLNGD ALLNPSKECEPYRR+ED+PIAPCGAIANSMFN
Sbjct: 121 YYGLSNFYQNHRRYVKSRDDSQLNGDPSALLNPSKECEPYRRNEDRPIAPCGAIANSMFN 180
Query: 672 DTLELYLIGNESE--STPIPLKKKGIAWWTDKNVKFRNPSGDIPLEERFKDTAKPVNWVK 845
DTLELYL+ NES+ PIPLKKKGIAWWTDKNVKFRNP G LEE+FKDT KPVNW K
Sbjct: 181 DTLELYLVANESDPKPIPIPLKKKGIAWWTDKNVKFRNPPGKESLEEKFKDTIKPVNWHK 240
Query: 846 PVYLLD-SDQDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTYQLDD-TSEYTY 1019
VY LD D+ NNGFINEDFIVWMRTAALPTFRKLYRLIER+ DLHPT TY
Sbjct: 241 AVYELDPEDESNNGFINEDFIVWMRTAALPTFRKLYRLIERRDDLHPTLPAGQYFLNITY 300
Query: 1020 IYP 1028
YP
Sbjct: 301 NYP 303
>ref|NP_848830.1| cell cycle control protein 50B [Mus musculus].
Length = 353
Score = 255 bits (652), Expect = 4e-68
Identities = 133/262 (50%), Positives = 169/262 (64%), Gaps = 10/262 (3%)
Frame = +3
Query: 210 RPDNTAFKQQRLPAWQPILTAGTVLPTXXXXXXXXXXXXXXXXVTSNNIREIEIDYTGTE 389
+PDNTAF QQRLPAWQP+L+AG LP +SN I+E+E DYTG
Sbjct: 12 QPDNTAFTQQRLPAWQPLLSAGIALPLFFCAGLAFIGLGLGLFYSSNGIKELEYDYTGNP 71
Query: 390 PSSPCNKCLSPNV-----TSCICTINFTLEQSFEGNVFMYYGLSNFYQNHRRYVKSRDDS 554
+ C+ C + C C+ +FTL + F G V++YY LSNFYQN+RRY SRDD+
Sbjct: 72 GTGDCSVCAAKGQGRAPPPGCACSWSFTLPELFPGPVYLYYELSNFYQNNRRYGVSRDDA 131
Query: 555 QLNGDHGALLNPSKECEPYR-RSEDKPIAPCGAIANSMFNDTLELYLIGNESES-TPIPL 728
QL+G AL +P+ EC PY+ RS+ PIAPCGAIANS+FND+ L+ S+ +PL
Sbjct: 132 QLSGLASALRHPANECAPYQFRSDGLPIAPCGAIANSLFNDSFSLWHQRQPSDPFVEVPL 191
Query: 729 KKKGIAWWTDKNVKFRNP---SGDIPLEERFKDTAKPVNWVKPVYLLDSDQDNNGFINED 899
+ IAWWTD +VKFRNP +G + L F+ TA P NW +PVY L D +N GFIN+D
Sbjct: 192 DRTAIAWWTDYHVKFRNPPLVNGSLAL--AFRGTAPPPNWHRPVYELSPDPNNTGFINQD 249
Query: 900 FIVWMRTAALPTFRKLYRLIER 965
F+VWMRTAALPTFRKLY I +
Sbjct: 250 FVVWMRTAALPTFRKLYARIRQ 271
>ref|NP_081927.1| cell cycle control protein 50C [Mus musculus].
Length = 342
Score = 206 bits (524), Expect = 2e-53
Identities = 115/262 (43%), Positives = 152/262 (58%), Gaps = 8/262 (3%)
Frame = +3
Query: 204 NRRPDNTAFKQQRLPAWQPILTAGTVLPTXXXXXXXXXXXXXXXXVTSNNIREIEIDYTG 383
+R P+NTA KQQ LP Q L+A VL +++ + ++IEI+YT
Sbjct: 10 SRLPENTALKQQTLPTQQLNLSASVVLSIFFITGGFCLSIGIILLLSAKSTKKIEINYTK 69
Query: 384 TEPSSPCNKCLSPNVTS------CICTINFTLEQSFEGNVFMYYGLSNFYQNHRRYVKSR 545
T C C S C C++ F L + EG+V+MYY L FYQN +Y+ SR
Sbjct: 70 T-----CANCAQLRENSSNFDKACNCSLPFYLPEKMEGDVYMYYKLYGFYQNLYQYILSR 124
Query: 546 DDSQLNGDHGALLNPSKECEPYRRSE-DKPIAPCGAIANSMFNDTLELYLIGNESESTPI 722
+SQL G + + C+P++ S D PI PCGAIANS+FNDT+ L N S +
Sbjct: 125 SNSQLVGKD---IWDTTNCDPFQVSHNDTPIIPCGAIANSIFNDTITLSYNLNSSTQIEV 181
Query: 723 PLKKKGIAWWTDKNVKFRNPSGDIPLEERFKDTAKPVNWVKPVYLLD-SDQDNNGFINED 899
P+ K G+ WWTDK VKFRNP F ++KP++W KP+Y LD D NNGF+NED
Sbjct: 182 PMLKSGLTWWTDKYVKFRNPRSS-NFTSTFAGSSKPLHWAKPIYELDLDDPGNNGFLNED 240
Query: 900 FIVWMRTAALPTFRKLYRLIER 965
FIVWMRTAA PTF+KLYR ++R
Sbjct: 241 FIVWMRTAAFPTFKKLYRRLKR 262
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,681,604
Number of extensions: 726986
Number of successful extensions: 2236
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2217
Number of HSP's successfully gapped: 3
Length of query: 350
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 248
Effective length of database: 12,553,887
Effective search space: 3113363976
Effective search space used: 3113363976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009609
(1052 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060717.1| cell cycle control protein 50A isoform 1 [Homo ... 511 e-145
Alignment gi|NP_001137430.1| cell cycle control protein 50A isoform 2 [Ho... 422 e-118
Alignment gi|NP_001017970.1| cell cycle control protein 50B [Homo sapiens]. 245 4e-65
>ref|NP_060717.1| cell cycle control protein 50A isoform 1 [Homo sapiens].
Length = 361
Score = 511 bits (1315), Expect = e-145
Identities = 249/300 (83%), Positives = 256/300 (85%), Gaps = 1/300 (0%)
Frame = +3
Query: 132 MAMNYNAKDEVDGGPPCAAGGTAKNRRPDNTAFKQQRLPAWQPILTAGTVLPTXXXXXXX 311
MAMNYNAKDEVDGGPPCA GGTAK RRPDNTAFKQQRLPAWQPILTAGTVLP
Sbjct: 1 MAMNYNAKDEVDGGPPCAPGGTAKTRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLI 60
Query: 312 XXXXXXXXXVTSNNIREIEIDYTGTEPSSPCNKCLSPNVTSCICTINFTLEQSFEGNVFM 491
VTSNNIREIEIDYTGTEPSSPCNKCLSP+VT C CTINFTLE+SFEGNVFM
Sbjct: 61 FIPIGIGIFVTSNNIREIEIDYTGTEPSSPCNKCLSPDVTPCFCTINFTLEKSFEGNVFM 120
Query: 492 YYGLSNFYQNHRRYVKSRDDSQLNGDHGALLNPSKECEPYRRSEDKPIAPCGAIANSMFN 671
YYGLSNFYQNHRRYVKSRDDSQLNGD ALLNPSKECEPYRR+EDKPIAPCGAIANSMFN
Sbjct: 121 YYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNEDKPIAPCGAIANSMFN 180
Query: 672 DTLELYLIGNESESTPIPLKKKGIAWWTDKNVKFRNPSGDIPLEERFKDTAKPVNWVKPV 851
DTLEL+LIGN+S PI LKKKGIAWWTDKNVKFRNP G LEERFK T KPVNW+KPV
Sbjct: 181 DTLELFLIGNDSYPIPIALKKKGIAWWTDKNVKFRNPPGGDNLEERFKGTTKPVNWLKPV 240
Query: 852 YLLDSDQDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTYQLDDTS-EYTYIYP 1028
Y+LDSD DNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPT S TY YP
Sbjct: 241 YMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYSLNVTYNYP 300
>ref|NP_001137430.1| cell cycle control protein 50A isoform 2 [Homo sapiens].
Length = 325
Score = 422 bits (1086), Expect = e-118
Identities = 217/300 (72%), Positives = 222/300 (74%), Gaps = 1/300 (0%)
Frame = +3
Query: 132 MAMNYNAKDEVDGGPPCAAGGTAKNRRPDNTAFKQQRLPAWQPILTAGTVLPTXXXXXXX 311
MAMNYNAKDEVDGGPPCA GGTAK RRPDNTAFKQQRLPAWQPILTAGTVLP
Sbjct: 1 MAMNYNAKDEVDGGPPCAPGGTAKTRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLI 60
Query: 312 XXXXXXXXXVTSNNIREIEIDYTGTEPSSPCNKCLSPNVTSCICTINFTLEQSFEGNVFM 491
VTSNNIREIE GNVFM
Sbjct: 61 FIPIGIGIFVTSNNIREIE------------------------------------GNVFM 84
Query: 492 YYGLSNFYQNHRRYVKSRDDSQLNGDHGALLNPSKECEPYRRSEDKPIAPCGAIANSMFN 671
YYGLSNFYQNHRRYVKSRDDSQLNGD ALLNPSKECEPYRR+EDKPIAPCGAIANSMFN
Sbjct: 85 YYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNEDKPIAPCGAIANSMFN 144
Query: 672 DTLELYLIGNESESTPIPLKKKGIAWWTDKNVKFRNPSGDIPLEERFKDTAKPVNWVKPV 851
DTLEL+LIGN+S PI LKKKGIAWWTDKNVKFRNP G LEERFK T KPVNW+KPV
Sbjct: 145 DTLELFLIGNDSYPIPIALKKKGIAWWTDKNVKFRNPPGGDNLEERFKGTTKPVNWLKPV 204
Query: 852 YLLDSDQDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTYQLDDTS-EYTYIYP 1028
Y+LDSD DNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPT S TY YP
Sbjct: 205 YMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYSLNVTYNYP 264
>ref|NP_001017970.1| cell cycle control protein 50B [Homo sapiens].
Length = 351
Score = 245 bits (626), Expect = 4e-65
Identities = 130/262 (49%), Positives = 164/262 (62%), Gaps = 10/262 (3%)
Frame = +3
Query: 210 RPDNTAFKQQRLPAWQPILTAGTVLPTXXXXXXXXXXXXXXXXVTSNNIREIEIDYTGTE 389
+PDNTAF QQRLPAWQP+L+A LP +SN I+E+E DYTG
Sbjct: 12 QPDNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGIKELEYDYTGDP 71
Query: 390 PSSPCNKCLSPNV-----TSCICTINFTLEQSFEGNVFMYYGLSNFYQNHRRYVKSRDDS 554
+ C+ C + C C F+L + F+G V++YY L+NFYQN+RRY SRDD+
Sbjct: 72 GTGNCSVCAAAGQGRALPPPCSCAWYFSLPELFQGPVYLYYELTNFYQNNRRYGVSRDDA 131
Query: 555 QLNGDHGALLNPSKECEPYRRSE-DKPIAPCGAIANSMFNDTLELYLIGNESES-TPIPL 728
QL+G AL +P EC PY+RS PIAPCGAIANS+FND+ L+ +PL
Sbjct: 132 QLSGLPSALRHPVNECAPYQRSAAGLPIAPCGAIANSLFNDSFSLWHQRQPGGPYVEVPL 191
Query: 729 KKKGIAWWTDKNVKFRNP---SGDIPLEERFKDTAKPVNWVKPVYLLDSDQDNNGFINED 899
+ GIAWWTD +VKFRNP +G + L F+ TA P NW +PVY L D +N GFIN+D
Sbjct: 192 DRSGIAWWTDYHVKFRNPPLVNGSLALA--FQGTAPPPNWRRPVYELSPDPNNTGFINQD 249
Query: 900 FIVWMRTAALPTFRKLYRLIER 965
F+VWMRTAALPTFRKLY I +
Sbjct: 250 FVVWMRTAALPTFRKLYARIRQ 271
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,721,492
Number of extensions: 848113
Number of successful extensions: 2728
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2715
Number of HSP's successfully gapped: 4
Length of query: 350
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,901,872
Effective search space: 3680762384
Effective search space used: 3680762384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009609
(1052 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 722 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 722 bits (364), Expect = 0.0
Identities = 367/368 (99%)
Strand = Plus / Plus
Query: 1 ggaagggtgtcccgcctcttccgccttcgcagcggaggtggcggcggcgcctgcgcgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101666301 ggaagggtgtcccgcctcttccgccttcgcagcggaggtggcggcggcgcctgcgcgtct 101666360
Query: 61 cgggttggggttggcaggcgggtcccctgggcggtccacctgcgcgtcgcggggccgcgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101666361 cgggttggggttggcaggcgggtcccctgggcggtccacctgcgcgtcgcggggccgcgc 101666420
Query: 121 cctgggggtcgatggcgatgaactataacgcgaaggacgaggtggacggcgggcccccgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101666421 cctgggggtcgatggcgatgaactataacgcgaaggacgaggtggacggcgggcccccgt 101666480
Query: 181 gtgccgcggggggcaccgctaagaaccggaggccggataacacggccttcaagcagcaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101666481 gtgccgcggggggcaccgctaagaaccggaggccggataacacggccttcaagcagcaac 101666540
Query: 241 ggctgccagcctggcagcccatccttacggccggcacggtgctgcccacctttttcatca 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 101666541 ggctgccagcctggcagcccatccttacggccggcacggtgctgcctacctttttcatca 101666600
Query: 301 ttggcctcatcttcatccctatcggcatcgggatctttgtcacctccaacaacatccgcg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101666601 ttggcctcatcttcatccctatcggcatcgggatctttgtcacctccaacaacatccgcg 101666660
Query: 361 agatcgag 368
||||||||
Sbjct: 101666661 agatcgag 101666668
Score = 361 bits (182), Expect = 5e-97
Identities = 206/210 (98%), Gaps = 3/210 (1%)
Strand = Plus / Minus
Query: 814 aagacacagcaaagccagtaaactgggttaaaccagtgtacctgctggattctgaccaag 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101838566 aagacacagcaaagccagtaaactgggttaaaccagtgtacctgctggattctgaccaag 101838507
Query: 874 ataataacgggttcattaatgaggattttattgtttggatgcgcactgcagcgttaccta 933
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101838506 ataataacgggttcataaatgaggattttattgtttggatgcgcactgcagcgttaccta 101838447
Query: 934 cttttcgtaagttgtatcgtctaatagagcggaaaagcgatttacatccaacg-taccag 992
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 101838446 cttttcgtaagttgtatcgtctaatagagcggaaaagcgatttacatccaacgttaccag 101838387
Query: 993 ctggacgatac-atctgaata-cacataca 1020
||||||||||| ||||||||| ||||||||
Sbjct: 101838386 ctggacgatactatctgaatatcacataca 101838357
Score = 287 bits (145), Expect = 6e-75
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 672 gatactctagaattgtatctgattggcaatgaatctgagtccacacctattcctttgaaa 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101839376 gatactctagaattgtatctgattggcaatgaatctgagtccacacctattcctttgaaa 101839317
Query: 732 aagaaaggcattgcttggtggacagacaaaaatgtgaaattcagaaatccctctggagac 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101839316 aagaaaggcattgcttggtggacagacaaaaatgtgaaattcagaaatccctctggagac 101839257
Query: 792 attccactagaagaacgattcaaag 816
|||||||||||||||||||||||||
Sbjct: 101839256 attccactagaagaacgattcaaag 101839232
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 475 agggcaatgtgtttatgtactatggactgtctaatttctatcaaaaccatcgtcgttatg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101690473 agggcaatgtgtttatgtactatggactgtctaatttctatcaaaaccatcgtcgttatg 101690532
Query: 535 tgaaatctcgagatgatagtcaactaaatggagatcatggtgctttactt 584
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101690533 tgaaatctcgagatgatagtcaactaaatggagatcatggtgctttactt 101690582
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 585 aatcccagtaaggaatgtgaaccttatcgaagaagtgaagacaaaccaattgctccttgt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101840515 aatcccagtaaggaatgtgaaccttatcgaagaagtgaagacaaaccaattgctccttgt 101840456
Query: 645 ggagccattgccaacagtatgtttaatg 672
||||||||||||||||||||||||||||
Sbjct: 101840455 ggagccattgccaacagtatgtttaatg 101840428
Score = 137 bits (69), Expect = 1e-29
Identities = 93/97 (95%), Gaps = 3/97 (3%)
Strand = Plus / Plus
Query: 382 gaacagagccttccagcccttgcaa-taaatgtttgtctccaaatgtgacatcttgcatt 440
||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||
Sbjct: 101687268 gaacagagccttccagcccttgcaaataaatgtt-gtctccaaatgtgacatct-gcatt 101687325
Query: 441 tgtaccattaacttcacattggaacaatcattcgagg 477
||||||||||| |||||||||||||||||||||||||
Sbjct: 101687326 tgtaccattaatttcacattggaacaatcattcgagg 101687362
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,745,968
Number of extensions: 149
Number of successful extensions: 149
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 6
Length of query: 1052
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1031
Effective length of database: 2,808,413,156
Effective search space: 2895473963836
Effective search space used: 2895473963836
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)