Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009629
(955 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073706.1| peroxisomal biogenesis factor 14 [Bos taurus]. 185 6e-47
>ref|NP_001073706.1| peroxisomal biogenesis factor 14 [Bos taurus].
Length = 296
Score = 185 bits (469), Expect = 6e-47
Identities = 93/100 (93%), Positives = 96/100 (96%)
Frame = +3
Query: 21 MASSEQAEQPSQPNSIPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKGLTD 200
MASSEQAEQPSQP+S PGSENVVPREPLIATAVKFLQNSRVRQSPLA RRAFLKKKGLTD
Sbjct: 1 MASSEQAEQPSQPSSAPGSENVVPREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTD 60
Query: 201 EEIDVAFQQSGSAADEPASLGPATQVVPVQPPHLIPQPYS 320
EEID+AFQQSG+AADEP SLGPATQVVPVQPPHLI QPYS
Sbjct: 61 EEIDLAFQQSGTAADEPMSLGPATQVVPVQPPHLISQPYS 100
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,768,772
Number of extensions: 965757
Number of successful extensions: 3717
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3687
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 216
Effective length of database: 14,306,398
Effective search space: 3090181968
Effective search space used: 3090181968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009629
(955 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851201.1| PREDICTED: similar to peroxisomal biogenesis fa... 183 2e-46
>ref|XP_851201.1| PREDICTED: similar to peroxisomal biogenesis factor 14 [Canis
familiaris].
Length = 422
Score = 183 bits (465), Expect = 2e-46
Identities = 92/102 (90%), Positives = 97/102 (95%)
Frame = +3
Query: 15 QKMASSEQAEQPSQPNSIPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKGL 194
+K ASSEQAE PSQP+S PGSENVVPREPLIATAVKFLQNSRVRQSPLA RRAFLKKKGL
Sbjct: 47 RKRASSEQAEPPSQPSSTPGSENVVPREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGL 106
Query: 195 TDEEIDVAFQQSGSAADEPASLGPATQVVPVQPPHLIPQPYS 320
TDEEID+AFQQSG+AADEP+SLGPATQVVPVQPPHLI QPYS
Sbjct: 107 TDEEIDLAFQQSGTAADEPSSLGPATQVVPVQPPHLISQPYS 148
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,135,792
Number of extensions: 986383
Number of successful extensions: 3706
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3676
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 215
Effective length of database: 15,440,896
Effective search space: 3319792640
Effective search space used: 3319792640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009629
(955 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127610.1| PREDICTED: peroxisomal membrane protein PEX1... 196 2e-50
Alignment gi|XP_003127609.1| PREDICTED: peroxisomal membrane protein PEX1... 196 2e-50
Alignment gi|XP_003356192.1| PREDICTED: peroxisomal membrane protein PEX1... 110 1e-24
>ref|XP_003127610.1| PREDICTED: peroxisomal membrane protein PEX14 isoform 2 [Sus
scrofa].
Length = 390
Score = 196 bits (497), Expect = 2e-50
Identities = 99/100 (99%), Positives = 99/100 (99%)
Frame = +3
Query: 21 MASSEQAEQPSQPNSIPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKGLTD 200
MASSEQAEQPSQPNS PGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKGLTD
Sbjct: 1 MASSEQAEQPSQPNSTPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKGLTD 60
Query: 201 EEIDVAFQQSGSAADEPASLGPATQVVPVQPPHLIPQPYS 320
EEIDVAFQQSGSAADEPASLGPATQVVPVQPPHLIPQPYS
Sbjct: 61 EEIDVAFQQSGSAADEPASLGPATQVVPVQPPHLIPQPYS 100
>ref|XP_003127609.1| PREDICTED: peroxisomal membrane protein PEX14 isoform 1 [Sus
scrofa].
Length = 374
Score = 196 bits (497), Expect = 2e-50
Identities = 99/100 (99%), Positives = 99/100 (99%)
Frame = +3
Query: 21 MASSEQAEQPSQPNSIPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKGLTD 200
MASSEQAEQPSQPNS PGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKGLTD
Sbjct: 1 MASSEQAEQPSQPNSTPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKGLTD 60
Query: 201 EEIDVAFQQSGSAADEPASLGPATQVVPVQPPHLIPQPYS 320
EEIDVAFQQSGSAADEPASLGPATQVVPVQPPHLIPQPYS
Sbjct: 61 EEIDVAFQQSGSAADEPASLGPATQVVPVQPPHLIPQPYS 100
>ref|XP_003356192.1| PREDICTED: peroxisomal membrane protein PEX14 [Sus scrofa].
Length = 331
Score = 110 bits (275), Expect = 1e-24
Identities = 56/57 (98%), Positives = 56/57 (98%)
Frame = +3
Query: 21 MASSEQAEQPSQPNSIPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKG 191
MASSEQAEQPSQPNS PGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKG
Sbjct: 1 MASSEQAEQPSQPNSTPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKG 57
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,988,221
Number of extensions: 620090
Number of successful extensions: 2401
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2388
Number of HSP's successfully gapped: 3
Length of query: 318
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 219
Effective length of database: 8,879,129
Effective search space: 1944529251
Effective search space used: 1944529251
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009629
(955 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062755.1| peroxisomal membrane protein PEX14 [Mus musculu... 181 1e-45
>ref|NP_062755.1| peroxisomal membrane protein PEX14 [Mus musculus].
Length = 376
Score = 181 bits (458), Expect = 1e-45
Identities = 90/100 (90%), Positives = 95/100 (95%)
Frame = +3
Query: 21 MASSEQAEQPSQPNSIPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKGLTD 200
MASSEQAEQP+QP+S PGSENVVPREPLIATAVKFLQNSRVRQSPLA RRAFLKKKGLTD
Sbjct: 1 MASSEQAEQPNQPSSPPGSENVVPREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTD 60
Query: 201 EEIDVAFQQSGSAADEPASLGPATQVVPVQPPHLIPQPYS 320
EEID+AFQQSG+AADEP+ LGPAT VVPVQPPHL PQPYS
Sbjct: 61 EEIDLAFQQSGTAADEPSPLGPATPVVPVQPPHLTPQPYS 100
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,179,651
Number of extensions: 826701
Number of successful extensions: 3109
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3093
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 217
Effective length of database: 12,583,923
Effective search space: 2730711291
Effective search space used: 2730711291
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009629
(955 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004556.1| peroxisomal membrane protein PEX14 [Homo sapien... 184 8e-47
>ref|NP_004556.1| peroxisomal membrane protein PEX14 [Homo sapiens].
Length = 377
Score = 184 bits (468), Expect = 8e-47
Identities = 92/100 (92%), Positives = 97/100 (97%)
Frame = +3
Query: 21 MASSEQAEQPSQPNSIPGSENVVPREPLIATAVKFLQNSRVRQSPLAARRAFLKKKGLTD 200
MASSEQAEQPSQP+S PGSENV+PREPLIATAVKFLQNSRVRQSPLA RRAFLKKKGLTD
Sbjct: 1 MASSEQAEQPSQPSSTPGSENVLPREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTD 60
Query: 201 EEIDVAFQQSGSAADEPASLGPATQVVPVQPPHLIPQPYS 320
EEID+AFQQSG+AADEP+SLGPATQVVPVQPPHLI QPYS
Sbjct: 61 EEIDMAFQQSGTAADEPSSLGPATQVVPVQPPHLISQPYS 100
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,649,485
Number of extensions: 982940
Number of successful extensions: 3643
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3616
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 215
Effective length of database: 14,901,872
Effective search space: 3203902480
Effective search space used: 3203902480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009629
(955 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1142 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 1142 bits (576), Expect = 0.0
Identities = 576/576 (100%)
Strand = Plus / Plus
Query: 188 agggctgacagatgaagagattgatgtggctttccagcagtcaggctcggctgccgatga 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64778346 agggctgacagatgaagagattgatgtggctttccagcagtcaggctcggctgccgatga 64778405
Query: 248 gcctgcgtccttgggcccagccacacaggtggttcctgtccagccccctcacctcattcc 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64778406 gcctgcgtccttgggcccagccacacaggtggttcctgtccagccccctcacctcattcc 64778465
Query: 308 gcagccatacagtaagtcacctgctcaaactcctgctttaaccttgactaggattcagga 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64778466 gcagccatacagtaagtcacctgctcaaactcctgctttaaccttgactaggattcagga 64778525
Query: 368 ttctggcccaggagcagtgcttcccgtctccccgactcggcaagccgggagaaactggga 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64778526 ttctggcccaggagcagtgcttcccgtctccccgactcggcaagccgggagaaactggga 64778585
Query: 428 gtaggagatggcgcttgggtttttccaaaagaatgtgacacacccgaatcctcttccagg 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64778586 gtaggagatggcgcttgggtttttccaaaagaatgtgacacacccgaatcctcttccagg 64778645
Query: 488 ccaacttttaagtatgcaacaaaggtgtaagaagcggcacaggaccagaataaatgaatt 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64778646 ccaacttttaagtatgcaacaaaggtgtaagaagcggcacaggaccagaataaatgaatt 64778705
Query: 548 tattgtatggtttcaggtattttggtgtcaagcaaggatctggaaaagtgtttatcggtt 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64778706 tattgtatggtttcaggtattttggtgtcaagcaaggatctggaaaagtgtttatcggtt 64778765
Query: 608 ctgtttccattttcttatatccgtgctttttgcatgttcctgtttcactaataagaacat 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64778766 ctgtttccattttcttatatccgtgctttttgcatgttcctgtttcactaataagaacat 64778825
Query: 668 aaacatctgattcatggctgcattcttatttggtccttgaaataacttacctcctaattt 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64778826 aaacatctgattcatggctgcattcttatttggtccttgaaataacttacctcctaattt 64778885
Query: 728 tatcttctagagttaacattagtaggtgcagactgg 763
||||||||||||||||||||||||||||||||||||
Sbjct: 64778886 tatcttctagagttaacattagtaggtgcagactgg 64778921
Score = 222 bits (112), Expect = 3e-55
Identities = 141/152 (92%), Gaps = 1/152 (0%)
Strand = Plus / Plus
Query: 805 gtgtcctggctatactgtgtacatttacgtagtggcagtctgctggtgaatttcagattg 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64778963 gtgtcctggctatactgtgtacatttacgtagtggcagtctgctggtgaatttcagattg 64779022
Query: 865 catgagaaggtcctttctgaatgaagcttttaatta-tacctgagaatgtgatccatgaa 923
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 64779023 catgagaaggtcctttctgaatgaagcttttaattattacctgagaatgtgatccatgag 64779082
Query: 924 aagnnnnnnnngttgtttttacatgaaagcta 955
| | |||||||||||||||||||||
Sbjct: 64779083 aggttttttttgttgtttttacatgaaagcta 64779114
Score = 172 bits (87), Expect = 2e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 104 gattgccacagcagtgaagtttctacagaattctcgggtccgccagagcccacttgcagc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64724020 gattgccacagcagtgaagtttctacagaattctcgggtccgccagagcccacttgcagc 64724079
Query: 164 caggagagcattccttaagaagaaagg 190
|||||||||||||||||||||||||||
Sbjct: 64724080 caggagagcattccttaagaagaaagg 64724106
Score = 111 bits (56), Expect = 7e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 1 gattagtcaggcctcaaaagatggcgtcctcggagcaggcagagcaaccgagccag 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64670741 gattagtcaggcctcaaaagatggcgtcctcggagcaggcagagcaaccgagccag 64670796
Score = 93.7 bits (47), Expect = 2e-16
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 54 cagccaaactctattccaggaagtgaaaatgtggtacctcgagagccactg 104
||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 64688743 cagccaaactctactccaggaagtgaaaatgtggtacctcgagagccactg 64688793
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,914,151
Number of extensions: 173
Number of successful extensions: 173
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 5
Length of query: 955
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 934
Effective length of database: 2,808,413,156
Effective search space: 2623057887704
Effective search space used: 2623057887704
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)