Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009638
(985 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,876,812
Number of extensions: 721089
Number of successful extensions: 2066
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2063
Number of HSP's successfully gapped: 0
Length of query: 328
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,273,310
Effective search space: 3211494750
Effective search space used: 3211494750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009638
(985 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547861.2| PREDICTED: similar to Gephyrin (Putative glycin... 266 2e-71
>ref|XP_547861.2| PREDICTED: similar to Gephyrin (Putative glycine receptor-tubulin
linker protein) [Canis familiaris].
Length = 742
Score = 266 bits (680), Expect = 2e-71
Identities = 140/175 (80%), Positives = 140/175 (80%), Gaps = 13/175 (7%)
Frame = +1
Query: 334 ETLIDWCDEKELNLILTTGGTGFAPRDVTPE-------------ATKEVIEREAPGMALA 474
ETLIDWCDEKELNLILTTGGTGFAPRDVTPE ATKEVIEREAPGMALA
Sbjct: 42 ETLIDWCDEKELNLILTTGGTGFAPRDVTPEKFPTFPFCGLQKGATKEVIEREAPGMALA 101
Query: 475 MLMGSLNVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIV 654
MLMGSLNVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIV
Sbjct: 102 MLMGSLNVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIV 161
Query: 655 KVKEVHDELEDXXXXXXXXXXXXXXXXHKQTEDKGVQCXXXXXXKKDSGVASTED 819
KVKEVHDELED HKQTEDKGVQC KKDSGVASTED
Sbjct: 162 KVKEVHDELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTED 216
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,157,933
Number of extensions: 743752
Number of successful extensions: 2286
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2276
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 225
Effective length of database: 15,440,896
Effective search space: 3474201600
Effective search space used: 3474201600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009638
(985 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230231.1| gephyrin [Sus scrofa]. 454 e-128
>ref|NP_001230231.1| gephyrin [Sus scrofa].
Length = 772
Score = 454 bits (1167), Expect = e-128
Identities = 232/272 (85%), Positives = 234/272 (86%)
Frame = +1
Query: 133 MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP 312
MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP
Sbjct: 1 MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP 60
Query: 313 DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL 492
DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL
Sbjct: 61 DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL 120
Query: 493 NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH 672
NVTPLGMLSRPVCGIRGKTLIINLPGSK+GSQECFQFILPALPHAIDLLRDAIVKVKEVH
Sbjct: 121 NVTPLGMLSRPVCGIRGKTLIINLPGSKEGSQECFQFILPALPHAIDLLRDAIVKVKEVH 180
Query: 673 DELEDXXXXXXXXXXXXXXXXHKQTEDKGVQCXXXXXXKKDSGVASTEDXXXXXXXXXXX 852
DELED HKQTEDKGVQC KKDSGVASTED
Sbjct: 181 DELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAI 240
Query: 853 XXXXXPFYTSPAVIMAHGEQPLPGLISYSHDA 948
PFYTSPAVIMAHGEQP+PGLISYSHDA
Sbjct: 241 AAKKHPFYTSPAVIMAHGEQPIPGLISYSHDA 272
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,825,675
Number of extensions: 460490
Number of successful extensions: 1370
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1366
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 229
Effective length of database: 8,879,129
Effective search space: 2033320541
Effective search space used: 2033320541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009638
(985 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666077.2| gephyrin isoform 1 [Mus musculus]. 441 e-124
Alignment gi|NP_766540.2| gephyrin isoform 2 [Mus musculus]. 406 e-113
>ref|NP_666077.2| gephyrin isoform 1 [Mus musculus].
Length = 772
Score = 441 bits (1135), Expect = e-124
Identities = 227/272 (83%), Positives = 230/272 (84%)
Frame = +1
Query: 133 MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP 312
MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP
Sbjct: 1 MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP 60
Query: 313 DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL 492
DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL
Sbjct: 61 DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL 120
Query: 493 NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH 672
NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH
Sbjct: 121 NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH 180
Query: 673 DELEDXXXXXXXXXXXXXXXXHKQTEDKGVQCXXXXXXKKDSGVASTEDXXXXXXXXXXX 852
DELED HKQTEDKGVQC KKDSGVASTED
Sbjct: 181 DELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAL 240
Query: 853 XXXXXPFYTSPAVIMAHGEQPLPGLISYSHDA 948
PFYTSPA+ MA+ QP+PGLISYSH A
Sbjct: 241 AAKKHPFYTSPALFMANHGQPIPGLISYSHHA 272
>ref|NP_766540.2| gephyrin isoform 2 [Mus musculus].
Length = 769
Score = 406 bits (1043), Expect = e-113
Identities = 207/229 (90%), Positives = 207/229 (90%)
Frame = +1
Query: 133 MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP 312
MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP
Sbjct: 1 MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP 60
Query: 313 DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL 492
DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL
Sbjct: 61 DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL 120
Query: 493 NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH 672
NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH
Sbjct: 121 NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH 180
Query: 673 DELEDXXXXXXXXXXXXXXXXHKQTEDKGVQCXXXXXXKKDSGVASTED 819
DELED HKQTEDKGVQC KKDSGVASTED
Sbjct: 181 DELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTED 229
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,075,156
Number of extensions: 626661
Number of successful extensions: 1789
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1784
Number of HSP's successfully gapped: 2
Length of query: 328
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 226
Effective length of database: 12,553,887
Effective search space: 2837178462
Effective search space used: 2837178462
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009638
(985 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065857.1| gephyrin isoform 1 [Homo sapiens]. 450 e-126
Alignment gi|NP_001019389.1| gephyrin isoform 2 [Homo sapiens]. 406 e-113
>ref|NP_065857.1| gephyrin isoform 1 [Homo sapiens].
Length = 769
Score = 450 bits (1157), Expect = e-126
Identities = 229/270 (84%), Positives = 232/270 (85%)
Frame = +1
Query: 133 MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP 312
MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP
Sbjct: 1 MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP 60
Query: 313 DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL 492
DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL
Sbjct: 61 DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL 120
Query: 493 NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH 672
NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH
Sbjct: 121 NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH 180
Query: 673 DELEDXXXXXXXXXXXXXXXXHKQTEDKGVQCXXXXXXKKDSGVASTEDXXXXXXXXXXX 852
DELED HKQTEDKGVQC KKDSGVASTED
Sbjct: 181 DELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAI 240
Query: 853 XXXXXPFYTSPAVIMAHGEQPLPGLISYSH 942
PFYTSPAV+MAHGEQP+PGLI+YSH
Sbjct: 241 AAKKHPFYTSPAVVMAHGEQPIPGLINYSH 270
>ref|NP_001019389.1| gephyrin isoform 2 [Homo sapiens].
Length = 736
Score = 406 bits (1043), Expect = e-113
Identities = 207/229 (90%), Positives = 207/229 (90%)
Frame = +1
Query: 133 MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP 312
MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP
Sbjct: 1 MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP 60
Query: 313 DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL 492
DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL
Sbjct: 61 DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL 120
Query: 493 NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH 672
NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH
Sbjct: 121 NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH 180
Query: 673 DELEDXXXXXXXXXXXXXXXXHKQTEDKGVQCXXXXXXKKDSGVASTED 819
DELED HKQTEDKGVQC KKDSGVASTED
Sbjct: 181 DELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTED 229
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,691,682
Number of extensions: 734134
Number of successful extensions: 2190
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2184
Number of HSP's successfully gapped: 2
Length of query: 328
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,901,872
Effective search space: 3352921200
Effective search space used: 3352921200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009638
(985 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 519 e-145
>Sscrofa_Chr07
|| Length = 134764511
Score = 519 bits (262), Expect = e-145
Identities = 276/278 (99%), Gaps = 2/278 (0%)
Strand = Plus / Plus
Query: 586 caggaatgctttcagttcatactgccagctctacctcatgccattgaccttttacgggat 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96980700 caggaatgctttcagttcatactgccagctctacctcatgccattgaccttttacgggat 96980759
Query: 646 gccattgtaaaagtaaaggaagtgcatgatgaacttgaagatttaccttccccaccacca 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96980760 gccattgtaaaagtaaaggaagtgcatgatgaacttgaagatttaccttccccaccacca 96980819
Query: 706 cctctttctcctcctcccacaactagcccccataaacagacagaagacaaaggggttcaa 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96980820 cctctttctcctcctcccacaactagcccccataaacagacagaagacaaaggggttcaa 96980879
Query: 766 tgtgaggaagaggaagaagagaagaaagacagtggtgttgcttcaacagaagatagttc- 824
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96980880 tgtgaggaagaggaagaagagaagaaagacagtggtgttgcttcaacagaagatagttct 96980939
Query: 825 ttcatcacatataactgcagcagcca-ttgctgccaag 861
|||||||||||||||||||||||||| |||||||||||
Sbjct: 96980940 ttcatcacatataactgcagcagccatttgctgccaag 96980977
Score = 194 bits (98), Expect = 6e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 425 aggccacaaaagaagtaatagaacgggaagcgccagggatggccctggcaatgctgatgg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96937789 aggccacaaaagaagtaatagaacgggaagcgccagggatggccctggcaatgctgatgg 96937848
Query: 485 gatcacttaatgttacacctctgggcatgctctctagg 522
||||||||||||||||||||||||||||||||||||||
Sbjct: 96937849 gatcacttaatgttacacctctgggcatgctctctagg 96937886
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 332 aggaaaccctgattgattggtgtgatgaaaaggaacttaatttgatattaacaactggag 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96902547 aggaaaccctgattgattggtgtgatgaaaaggaacttaatttgatattaacaactggag 96902606
Query: 392 gaacaggatttgcaccacgagatgtcactccggagg 427
||||||||||||||||||||||||||||||||||||
Sbjct: 96902607 gaacaggatttgcaccacgagatgtcactccggagg 96902642
Score = 186 bits (94), Expect = 2e-44
Identities = 107/110 (97%), Gaps = 1/110 (0%)
Strand = Plus / Plus
Query: 860 agaagcatccattctacaccagtcctgctgttatcatggcacacggtgagcagcccctcc 919
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 96982322 agaagcatccattctacaccagtcctgctgttatcatggcacacggtgagcagcccatcc 96982381
Query: 920 ctggtctcatcagttattcccatgatgc-acaggcagtgcagaggaaccg 968
|||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 96982382 ctggtctcatcagttattcccatgatgcaacaggcagtgcagagaaaccg 96982431
Score = 182 bits (92), Expect = 2e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 105 tgtcagtgcggtgactgcgctgggaaacatggcgaccgagggaatgatcctcactaacca 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96759644 tgtcagtgcggtgactgcgctgggaaacatggcgaccgagggaatgatcctcactaacca 96759703
Query: 165 cgaccatcaaatccgggtcggagtcctcacag 196
||||||||||||||||||||||||||||||||
Sbjct: 96759704 cgaccatcaaatccgggtcggagtcctcacag 96759735
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 520 aggcctgtatgtggaatcagagggaaaactctcataattaacttgccaggtagcaagaaa 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96974881 aggcctgtatgtggaatcagagggaaaactctcataattaacttgccaggtagcaagaaa 96974940
Query: 580 ggatctcagg 589
||||||||||
Sbjct: 96974941 ggatctcagg 96974950
Score = 71.9 bits (36), Expect = 6e-10
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 5 tttgctctcctcgcgctccacgggcgctcacactct 40
||||||||||||||||||||||||||||||||||||
Sbjct: 96759544 tttgctctcctcgcgctccacgggcgctcacactct 96759579
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,027,481
Number of extensions: 422
Number of successful extensions: 422
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 421
Number of HSP's successfully gapped: 7
Length of query: 985
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 964
Effective length of database: 2,808,413,156
Effective search space: 2707310282384
Effective search space used: 2707310282384
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)