Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009663
(990 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039558.1| ubiquinone biosynthesis monooxygenase COQ6 [... 549 e-156
>ref|NP_001039558.1| ubiquinone biosynthesis monooxygenase COQ6 [Bos taurus].
Length = 469
Score = 549 bits (1415), Expect = e-156
Identities = 276/323 (85%), Positives = 286/323 (88%)
Frame = +2
Query: 20 MAARLAGSRSGTALSAAQRGPLVSCRRWAGATADTVYDXXXXXXXXXXXXXXXXLGHDIH 199
MAA+LA R GT +AAQ+GP VSCRRWAGA+AD VYD LGHDIH
Sbjct: 1 MAAQLARVRWGTVFAAAQKGPRVSCRRWAGASADNVYDVVVSGGGLVGAAMACALGHDIH 60
Query: 200 FGDKKILLLEAGPKKVLGKLPETYSNRVSSISPGSATLLSSFGAWDHICNMRYRAFRRMQ 379
F DKKILLLEAGPKKVL KLPETYSNRVSSISPGSATLLSSFGAWDHICNMR RAFRRMQ
Sbjct: 61 FCDKKILLLEAGPKKVLEKLPETYSNRVSSISPGSATLLSSFGAWDHICNMRCRAFRRMQ 120
Query: 380 VWDACSEALIMFDKDNLDDMGYIVENDVIMQALTKQLEAVSDRVTVLYKSKAVSYTWPYP 559
VWDACSEALIMFDKDNLDDMGYIVENDVIM ALTKQLEAVSD+VTVLYKSKAVSYTWPYP
Sbjct: 121 VWDACSEALIMFDKDNLDDMGYIVENDVIMHALTKQLEAVSDQVTVLYKSKAVSYTWPYP 180
Query: 560 FSMADSSPWVHITLGDGSTLQTKLLIGADGHNSGVRQAAGIRDVSWNYDQSAVVATLHLS 739
FSMADSSPWVHITLGDG TLQTKLLIGADGHNSGVRQAAGIR+VSWNYDQSAVVATLHLS
Sbjct: 181 FSMADSSPWVHITLGDGRTLQTKLLIGADGHNSGVRQAAGIRNVSWNYDQSAVVATLHLS 240
Query: 740 EPTENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAINSAFWS 919
E TENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSM+EE+FVDAINSAFWS
Sbjct: 241 EATENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMEEEEFVDAINSAFWS 300
Query: 920 DANHTDLVDSASSVLHYVVFILK 988
D NHTD +DSA S+L V LK
Sbjct: 301 DVNHTDFIDSAGSMLQSAVAFLK 323
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,972,700
Number of extensions: 1222863
Number of successful extensions: 3793
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3782
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,273,310
Effective search space: 3240041370
Effective search space used: 3240041370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009663
(990 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547900.1| PREDICTED: similar to Ubiquinone biosynthesis m... 545 e-155
>ref|XP_547900.1| PREDICTED: similar to Ubiquinone biosynthesis monooxgenase COQ6
[Canis familiaris].
Length = 469
Score = 545 bits (1403), Expect = e-155
Identities = 272/323 (84%), Positives = 286/323 (88%)
Frame = +2
Query: 20 MAARLAGSRSGTALSAAQRGPLVSCRRWAGATADTVYDXXXXXXXXXXXXXXXXLGHDIH 199
MAARLA SR L+AA GPL+SCRRW+GA AD VYD LG++IH
Sbjct: 1 MAARLAVSRWRAPLAAAGPGPLLSCRRWSGARADAVYDVVVSGGGLVGAAMACALGYNIH 60
Query: 200 FGDKKILLLEAGPKKVLGKLPETYSNRVSSISPGSATLLSSFGAWDHICNMRYRAFRRMQ 379
F DKKILLLEAGPKKV KLPETYSNRVSSISPGSATLLSSFGAWDHICNMRYRAFRRMQ
Sbjct: 61 FHDKKILLLEAGPKKVWEKLPETYSNRVSSISPGSATLLSSFGAWDHICNMRYRAFRRMQ 120
Query: 380 VWDACSEALIMFDKDNLDDMGYIVENDVIMQALTKQLEAVSDRVTVLYKSKAVSYTWPYP 559
VWDACSEALIMFDKDNLDDMGYIVENDVIM+ALTKQLEA SDRVTVLY+SKAV YTWPYP
Sbjct: 121 VWDACSEALIMFDKDNLDDMGYIVENDVIMRALTKQLEAASDRVTVLYRSKAVGYTWPYP 180
Query: 560 FSMADSSPWVHITLGDGSTLQTKLLIGADGHNSGVRQAAGIRDVSWNYDQSAVVATLHLS 739
F+MADSSPWVHITLGDGSTLQTKLL+GADGHNSGVRQAAGI++VSWNYDQSAVVATLHLS
Sbjct: 181 FTMADSSPWVHITLGDGSTLQTKLLVGADGHNSGVRQAAGIQNVSWNYDQSAVVATLHLS 240
Query: 740 EPTENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAINSAFWS 919
E TENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAINSAFWS
Sbjct: 241 EATENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAINSAFWS 300
Query: 920 DANHTDLVDSASSVLHYVVFILK 988
DANHTD +DSA ++L Y V LK
Sbjct: 301 DANHTDFIDSAGAMLQYAVAFLK 323
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,604,368
Number of extensions: 1248269
Number of successful extensions: 3813
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3805
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 227
Effective length of database: 15,440,896
Effective search space: 3505083392
Effective search space used: 3505083392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009663
(990 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929141.1| PREDICTED: ubiquinone biosynthesis monooxyge... 609 e-175
>ref|XP_001929141.1| PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Sus scrofa].
Length = 469
Score = 609 bits (1571), Expect = e-175
Identities = 306/323 (94%), Positives = 306/323 (94%)
Frame = +2
Query: 20 MAARLAGSRSGTALSAAQRGPLVSCRRWAGATADTVYDXXXXXXXXXXXXXXXXLGHDIH 199
MAARLAGSRSGTALSAAQRGPLVSCRRWAGATADTVYD LGHDIH
Sbjct: 1 MAARLAGSRSGTALSAAQRGPLVSCRRWAGATADTVYDVVVSGGGMVGAAMACALGHDIH 60
Query: 200 FGDKKILLLEAGPKKVLGKLPETYSNRVSSISPGSATLLSSFGAWDHICNMRYRAFRRMQ 379
FGDKKILLLEAGPKKVLGKLPETYSNRVSSISPGSATLLSSFGAWDHICNMRYRAFRRMQ
Sbjct: 61 FGDKKILLLEAGPKKVLGKLPETYSNRVSSISPGSATLLSSFGAWDHICNMRYRAFRRMQ 120
Query: 380 VWDACSEALIMFDKDNLDDMGYIVENDVIMQALTKQLEAVSDRVTVLYKSKAVSYTWPYP 559
VWDACSEALIMFDKDNLDDMGYIVENDVIMQALTKQLEAVSDRVTVLYKSKAVSYTWPYP
Sbjct: 121 VWDACSEALIMFDKDNLDDMGYIVENDVIMQALTKQLEAVSDRVTVLYKSKAVSYTWPYP 180
Query: 560 FSMADSSPWVHITLGDGSTLQTKLLIGADGHNSGVRQAAGIRDVSWNYDQSAVVATLHLS 739
FSMADSSPWVHITLGDGSTLQTKLLIGADGHNSGVRQAAGIRDVSWNYDQSAVVATLHLS
Sbjct: 181 FSMADSSPWVHITLGDGSTLQTKLLIGADGHNSGVRQAAGIRDVSWNYDQSAVVATLHLS 240
Query: 740 EPTENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAINSAFWS 919
EPTENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAINSAFWS
Sbjct: 241 EPTENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAINSAFWS 300
Query: 920 DANHTDLVDSASSVLHYVVFILK 988
DANHTDLVDSASSVLHYVV ILK
Sbjct: 301 DANHTDLVDSASSVLHYVVSILK 323
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,062,803
Number of extensions: 785593
Number of successful extensions: 2348
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2342
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,879,129
Effective search space: 2051078799
Effective search space used: 2051078799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009663
(990 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_766170.2| ubiquinone biosynthesis monooxygenase COQ6 [Mus... 509 e-144
>ref|NP_766170.2| ubiquinone biosynthesis monooxygenase COQ6 [Mus musculus].
Length = 476
Score = 509 bits (1310), Expect = e-144
Identities = 256/328 (78%), Positives = 280/328 (85%)
Frame = +2
Query: 5 AQVSTMAARLAGSRSGTALSAAQRGPLVSCRRWAGATADTVYDXXXXXXXXXXXXXXXXL 184
A++ +MA L +A AA+ GPLV+ +RWAG++ADTVYD L
Sbjct: 3 ARIGSMAGLLCVRWWSSAQLAARGGPLVASQRWAGSSADTVYDVVVSGGGLVGSAMACAL 62
Query: 185 GHDIHFGDKKILLLEAGPKKVLGKLPETYSNRVSSISPGSATLLSSFGAWDHICNMRYRA 364
GHDIHF DKKILLLEAGPKK L KL ETYSNRVSSISPGS TLLSSFGAWDHICNMR +A
Sbjct: 63 GHDIHFHDKKILLLEAGPKKALEKLSETYSNRVSSISPGSTTLLSSFGAWDHICNMRCKA 122
Query: 365 FRRMQVWDACSEALIMFDKDNLDDMGYIVENDVIMQALTKQLEAVSDRVTVLYKSKAVSY 544
FRRMQVWD+CSEALIMFD+DNLDDMGYIVENDVIM ALTKQLEAV+DRV VLY+SKAV Y
Sbjct: 123 FRRMQVWDSCSEALIMFDRDNLDDMGYIVENDVIMYALTKQLEAVADRVKVLYESKAVGY 182
Query: 545 TWPYPFSMADSSPWVHITLGDGSTLQTKLLIGADGHNSGVRQAAGIRDVSWNYDQSAVVA 724
+WP FSMADSSPWVHITLGDGSTLQTKLLIGADGH SGVRQAAGI++VSW YDQSAVVA
Sbjct: 183 SWPGAFSMADSSPWVHITLGDGSTLQTKLLIGADGHKSGVRQAAGIQNVSWKYDQSAVVA 242
Query: 725 TLHLSEPTENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAIN 904
TLHLSE TENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEE+FVDAIN
Sbjct: 243 TLHLSEATENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEEFVDAIN 302
Query: 905 SAFWSDANHTDLVDSASSVLHYVVFILK 988
SAFWSD +HTD VDSAS+++ + V +LK
Sbjct: 303 SAFWSDVHHTDFVDSASAMVRHAVALLK 330
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,353,855
Number of extensions: 1039944
Number of successful extensions: 2883
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2879
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 228
Effective length of database: 12,553,887
Effective search space: 2862286236
Effective search space used: 2862286236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009663
(990 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_872282.1| ubiquinone biosynthesis monooxygenase COQ6 isof... 531 e-151
Alignment gi|NP_872286.2| ubiquinone biosynthesis monooxygenase COQ6 isof... 493 e-140
>ref|NP_872282.1| ubiquinone biosynthesis monooxygenase COQ6 isoform a [Homo
sapiens].
Length = 468
Score = 531 bits (1367), Expect = e-151
Identities = 266/323 (82%), Positives = 281/323 (86%)
Frame = +2
Query: 20 MAARLAGSRSGTALSAAQRGPLVSCRRWAGATADTVYDXXXXXXXXXXXXXXXXLGHDIH 199
MAARL SR G +A GPLVS RRW+GA+ DTVYD LG+DIH
Sbjct: 1 MAARLV-SRCGAVRAAPHSGPLVSWRRWSGASTDTVYDVVVSGGGLVGAAMACALGYDIH 59
Query: 200 FGDKKILLLEAGPKKVLGKLPETYSNRVSSISPGSATLLSSFGAWDHICNMRYRAFRRMQ 379
F DKKILLLEAGPKKVL KL ETYSNRVSSISPGSATLLSSFGAWDHICNMRYRAFRRMQ
Sbjct: 60 FHDKKILLLEAGPKKVLEKLSETYSNRVSSISPGSATLLSSFGAWDHICNMRYRAFRRMQ 119
Query: 380 VWDACSEALIMFDKDNLDDMGYIVENDVIMQALTKQLEAVSDRVTVLYKSKAVSYTWPYP 559
VWDACSEALIMFDKDNLDDMGYIVENDVIM ALTKQLEAVSDRVTVLY+SKA+ YTWP P
Sbjct: 120 VWDACSEALIMFDKDNLDDMGYIVENDVIMHALTKQLEAVSDRVTVLYRSKAIRYTWPCP 179
Query: 560 FSMADSSPWVHITLGDGSTLQTKLLIGADGHNSGVRQAAGIRDVSWNYDQSAVVATLHLS 739
F MADSSPWVHITLGDGST QTKLLIGADGHNSGVRQA GI++VSWNYDQSAVVATLHLS
Sbjct: 180 FPMADSSPWVHITLGDGSTFQTKLLIGADGHNSGVRQAVGIQNVSWNYDQSAVVATLHLS 239
Query: 740 EPTENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAINSAFWS 919
E TENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDA+NSAFWS
Sbjct: 240 EATENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAVNSAFWS 299
Query: 920 DANHTDLVDSASSVLHYVVFILK 988
DA+HTD +D+A ++L Y V +LK
Sbjct: 300 DADHTDFIDTAGAMLQYAVSLLK 322
>ref|NP_872286.2| ubiquinone biosynthesis monooxygenase COQ6 isoform b [Homo
sapiens].
Length = 443
Score = 493 bits (1270), Expect = e-140
Identities = 241/268 (89%), Positives = 253/268 (94%)
Frame = +2
Query: 185 GHDIHFGDKKILLLEAGPKKVLGKLPETYSNRVSSISPGSATLLSSFGAWDHICNMRYRA 364
G+DIHF DKKILLLEAGPKKVL KL ETYSNRVSSISPGSATLLSSFGAWDHICNMRYRA
Sbjct: 30 GYDIHFHDKKILLLEAGPKKVLEKLSETYSNRVSSISPGSATLLSSFGAWDHICNMRYRA 89
Query: 365 FRRMQVWDACSEALIMFDKDNLDDMGYIVENDVIMQALTKQLEAVSDRVTVLYKSKAVSY 544
FRRMQVWDACSEALIMFDKDNLDDMGYIVENDVIM ALTKQLEAVSDRVTVLY+SKA+ Y
Sbjct: 90 FRRMQVWDACSEALIMFDKDNLDDMGYIVENDVIMHALTKQLEAVSDRVTVLYRSKAIRY 149
Query: 545 TWPYPFSMADSSPWVHITLGDGSTLQTKLLIGADGHNSGVRQAAGIRDVSWNYDQSAVVA 724
TWP PF MADSSPWVHITLGDGST QTKLLIGADGHNSGVRQA GI++VSWNYDQSAVVA
Sbjct: 150 TWPCPFPMADSSPWVHITLGDGSTFQTKLLIGADGHNSGVRQAVGIQNVSWNYDQSAVVA 209
Query: 725 TLHLSEPTENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAIN 904
TLHLSE TENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDA+N
Sbjct: 210 TLHLSEATENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAVN 269
Query: 905 SAFWSDANHTDLVDSASSVLHYVVFILK 988
SAFWSDA+HTD +D+A ++L Y V +LK
Sbjct: 270 SAFWSDADHTDFIDTAGAMLQYAVSLLK 297
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,903,295
Number of extensions: 1243140
Number of successful extensions: 3650
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3645
Number of HSP's successfully gapped: 2
Length of query: 330
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,901,872
Effective search space: 3382724944
Effective search space used: 3382724944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009663
(990 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 367 8e-99
>Sscrofa_Chr07
|| Length = 134764511
Score = 367 bits (185), Expect = 8e-99
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 2 acggcgcaagtcagcaccatggctgcccggctggctggcagccgatcggggactgctctt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103012823 acggcgcaagtcagcaccatggctgcccggctggctggcagccgatcggggactgctctt 103012882
Query: 62 tctgctgcccagagaggcccgctagtttcctgtcggaggtgggccggcgccacggctgac 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103012883 tctgctgcccagagaggcccgctagtttcctgtcggaggtgggccggcgccacggctgac 103012942
Query: 122 accgtgtatgatgttgtggtgtcgggtggaggcatggtgggcgccgctatggcctgtgcc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103012943 accgtgtatgatgttgtggtgtcgggtggaggcatggtgggcgccgctatggcctgtgcc 103013002
Query: 182 ttggg 186
|||||
Sbjct: 103013003 ttggg 103013007
Score = 274 bits (138), Expect = 9e-71
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 185 ggacatgatattcactttggtgacaagaaaattctgttgctagaagcaggtccaaagaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103015954 ggacatgatattcactttggtgacaagaaaattctgttgctagaagcaggtccaaagaaa 103016013
Query: 245 gtattggggaaattaccagaaacttacagcaacagggtcagctccatttcccctggctct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103016014 gtattggggaaattaccagaaacttacagcaacagggtcagctccatttcccctggctct 103016073
Query: 305 gcaacccttctcagtagt 322
||||||||||||||||||
Sbjct: 103016074 gcaacccttctcagtagt 103016091
Score = 264 bits (133), Expect = 8e-68
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 502 agaccgagtgaccgttctctacaagagcaaagcagtcagctatacctggccttacccatt 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103019621 agaccgagtgaccgttctctacaagagcaaagcagtcagctatacctggccttacccatt 103019680
Query: 562 ttccatggcagactccagcccttgggttcatattaccctaggtgatggcagcaccctcca 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103019681 ttccatggcagactccagcccttgggttcatattaccctaggtgatggcagcaccctcca 103019740
Query: 622 gaccaaattgttg 634
|||||||||||||
Sbjct: 103019741 gaccaaattgttg 103019753
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 378 aggtgtgggatgcctgctccgaggccctgatcatgtttgacaaggataatttagatgaca 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103017492 aggtgtgggatgcctgctccgaggccctgatcatgtttgacaaggataatttagatgaca 103017551
Query: 438 tgggctatatcgtggagaatgatgtcatcatgcaggccctcacgaagcagctggaggctg 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103017552 tgggctatatcgtggagaatgatgtcatcatgcaggccctcacgaagcagctggaggctg 103017611
Query: 498 tgtcag 503
||||||
Sbjct: 103017612 tgtcag 103017617
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 634 gattggtgctgatggtcacaactcaggagtacggcaggctgctggaatccgggatgttag 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103020588 gattggtgctgatggtcacaactcaggagtacggcaggctgctggaatccgggatgttag 103020647
Query: 694 ctggaactatgaccagtccgctgttgtggctactttgcatttatcagag 742
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103020648 ctggaactatgaccagtccgctgttgtggctactttgcatttatcagag 103020696
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 805 gctctcggacactttgagttccttggtttggtccacatcccatgaacacgcagcagagct 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103021023 gctctcggacactttgagttccttggtttggtccacatcccatgaacacgcagcagagct 103021082
Query: 865 ggtcagtatggatgaggaaaagtttgtggatgccattaactctgccttt 913
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103021083 ggtcagtatggatgaggaaaagtttgtggatgccattaactctgccttt 103021131
Score = 139 bits (70), Expect = 3e-30
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 914 tggagtgatgctaaccacacagacctcgtcgactcggccagctccgtgctgcactatgtg 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103022987 tggagtgatgctaaccacacagacctcgtcgactcggccagctccgtgctgcactatgtg 103023046
Query: 974 gttttcattctgaa 987
|||| |||||||||
Sbjct: 103023047 gtttccattctgaa 103023060
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 741 agcccacggaaaacaatgtagcttggcagagatttcttccgtctgggcccattgctctgc 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103020774 agcccacggaaaacaatgtagcttggcagagatttcttccgtctgggcccattgctctgc 103020833
Query: 801 tcccg 805
|||||
Sbjct: 103020834 tcccg 103020838
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 321 gttttggtgcctgggaccacatctgcaacatgagatacagagcctttcggcgaatgcagg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103017139 gttttggtgcctgggaccacatctgcaacatgagatacagagcctttcggcgaatgcagg 103017198
Query: 381 tg 382
||
Sbjct: 103017199 tg 103017200
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,153,849
Number of extensions: 132
Number of successful extensions: 132
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 9
Length of query: 990
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 969
Effective length of database: 2,808,413,156
Effective search space: 2721352348164
Effective search space used: 2721352348164
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)