Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009668
(886 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002685738.1| PREDICTED: synaptotagmin-like 1 [Bos taurus]. 253 2e-67
Alignment gi|XP_606038.3| PREDICTED: synaptotagmin-like 1 [Bos taurus]. 226 3e-59
Alignment gi|NP_001095748.1| synaptotagmin-like protein 2 [Bos taurus]. 89 4e-18
>ref|XP_002685738.1| PREDICTED: synaptotagmin-like 1 [Bos taurus].
Length = 553
Score = 253 bits (645), Expect = 2e-67
Identities = 143/237 (60%), Positives = 152/237 (64%)
Frame = +2
Query: 134 MPQRGHPSQEGLRVLPGLLMAHEPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 313
MPQRGHP+ EG LPGLLMA EPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE
Sbjct: 1 MPQRGHPAPEGPWSLPGLLMAREPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 60
Query: 314 GRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRGDQARGS 493
GR+ KLRASL DPGQLKILTGDWFQEARSQRHHH H GSDLVRASIRRKKG R DQA GS
Sbjct: 61 GRISKLRASLADPGQLKILTGDWFQEARSQRHHHAHFGSDLVRASIRRKKGCRRDQAGGS 120
Query: 494 NGXXXXXXXXXXXXXXPRLPIDKAPQESLSEAEGPDFPSPYVPTKASDNXXXXXXXXXXX 673
+ PRL +D+ PQE EAE + P D
Sbjct: 121 DVEAEAAGKETEEALEPRLSVDEGPQERFIEAEPSEQEEE--PQAEEDEREGHPLVVAGE 178
Query: 674 XXDVQVXXXXXXXXXXXXXSGAEEEPQPRPAQTQEASEILGEWGGGPGPDPSLDRML 844
D ++ S EEEPQ PAQTQ ASE+L PGPD S DRML
Sbjct: 179 EADPEMQPP----------SMGEEEPQTPPAQTQAASEMLENGEENPGPDSSFDRML 225
>ref|XP_606038.3| PREDICTED: synaptotagmin-like 1 [Bos taurus].
Length = 468
Score = 226 bits (575), Expect = 3e-59
Identities = 116/153 (75%), Positives = 121/153 (79%)
Frame = +2
Query: 134 MPQRGHPSQEGLRVLPGLLMAHEPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 313
MPQRGHP+ EG LPGLLMA EPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE
Sbjct: 1 MPQRGHPAPEGPWSLPGLLMAREPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 60
Query: 314 GRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRGDQARGS 493
GR+ KLRASL DPGQLKILTGDWFQEARSQRHHH H GSDLVRASIRRKKG R DQA GS
Sbjct: 61 GRISKLRASLADPGQLKILTGDWFQEARSQRHHHAHFGSDLVRASIRRKKGCRRDQAGGS 120
Query: 494 NGXXXXXXXXXXXXXXPRLPIDKAPQESLSEAE 592
+ PRL +D+ PQE EAE
Sbjct: 121 DVEAEAAGKETEEALEPRLSVDEGPQERFIEAE 153
>ref|NP_001095748.1| synaptotagmin-like protein 2 [Bos taurus].
Length = 943
Score = 89.4 bits (220), Expect = 4e-18
Identities = 43/86 (50%), Positives = 63/86 (73%)
Frame = +2
Query: 224 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 403
++DLSFLTEEEQEAI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKVKDDQQLKNMSGQWFYEAKAK 60
Query: 404 RHHHTHLGSDLVRASIRRKKGSRGDQ 481
RH G+D++R S+R+K+ D+
Sbjct: 61 RHRDRIHGADIIRVSMRKKRPQVADE 86
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,888,995
Number of extensions: 1011638
Number of successful extensions: 7894
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7117
Number of HSP's successfully gapped: 3
Length of query: 295
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 194
Effective length of database: 14,339,486
Effective search space: 2781860284
Effective search space used: 2781860284
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009668
(886 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544472.2| PREDICTED: similar to synaptotagmin-like 1 [Can... 285 5e-77
Alignment gi|XP_858503.1| PREDICTED: similar to synaptotagmin-like 2 isof... 91 1e-18
Alignment gi|XP_542272.2| PREDICTED: similar to synaptotagmin-like 2 isof... 91 1e-18
Alignment gi|XP_849308.1| PREDICTED: similar to synaptotagmin-like 2 isof... 91 1e-18
>ref|XP_544472.2| PREDICTED: similar to synaptotagmin-like 1 [Canis familiaris].
Length = 575
Score = 285 bits (728), Expect = 5e-77
Identities = 159/256 (62%), Positives = 167/256 (65%)
Frame = +2
Query: 77 PYWTPTGSHVCPAGAPPQLMPQRGHPSQEGLRVLPGLLMAHEPEPEADGLLDLSFLTEEE 256
P + +H CPAGA PQLMPQRGHPSQEGL LP L MAHEPEPEADGLLDLSFLTEEE
Sbjct: 6 PVYAAIRNHACPAGALPQLMPQRGHPSQEGLWALPSLPMAHEPEPEADGLLDLSFLTEEE 65
Query: 257 QEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDL 436
QEAIA+VLKRDAHLRQLEEGRV KLRAS+ DPGQLKILTGDWFQEARSQRHHH H GSDL
Sbjct: 66 QEAIADVLKRDAHLRQLEEGRVSKLRASVADPGQLKILTGDWFQEARSQRHHHAHFGSDL 125
Query: 437 VRASIRRKKGSRGDQARGSNGXXXXXXXXXXXXXXPRLPIDKAPQESLSEAEGPDFPSPY 616
VRASIRRKK S GDQA GS+G RLP+DKAPQE LS+A
Sbjct: 126 VRASIRRKKSSMGDQAPGSDGEAEAAEKDAEEEVESRLPMDKAPQEMLSKA--------- 176
Query: 617 VPTKASDNXXXXXXXXXXXXXDVQVXXXXXXXXXXXXXSGAEEEPQPRPAQTQEASEILG 796
KASD D QV G EEP P PAQTQ A EIL
Sbjct: 177 ---KASDQEEEPQAQEAPGPGDPQVSAEEADPEPEPRSRG--EEPPPPPAQTQAAPEILE 231
Query: 797 EWGGGPGPDPSLDRML 844
PGP S+DRML
Sbjct: 232 NGEEAPGPGSSVDRML 247
>ref|XP_858503.1| PREDICTED: similar to synaptotagmin-like 2 isoform a isoform 5
[Canis familiaris].
Length = 932
Score = 91.3 bits (225), Expect = 1e-18
Identities = 44/80 (55%), Positives = 62/80 (77%)
Frame = +2
Query: 224 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 403
++DLSFLTEEEQEAI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAK 60
Query: 404 RHHHTHLGSDLVRASIRRKK 463
RH G+D++RAS+R+KK
Sbjct: 61 RHRDRIHGADIIRASMRKKK 80
>ref|XP_542272.2| PREDICTED: similar to synaptotagmin-like 2 isoform a isoform 1
[Canis familiaris].
Length = 921
Score = 91.3 bits (225), Expect = 1e-18
Identities = 44/80 (55%), Positives = 62/80 (77%)
Frame = +2
Query: 224 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 403
++DLSFLTEEEQEAI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAK 60
Query: 404 RHHHTHLGSDLVRASIRRKK 463
RH G+D++RAS+R+KK
Sbjct: 61 RHRDRIHGADIIRASMRKKK 80
>ref|XP_849308.1| PREDICTED: similar to synaptotagmin-like 2 isoform a isoform 3
[Canis familiaris].
Length = 908
Score = 91.3 bits (225), Expect = 1e-18
Identities = 44/80 (55%), Positives = 62/80 (77%)
Frame = +2
Query: 224 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 403
++DLSFLTEEEQEAI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAK 60
Query: 404 RHHHTHLGSDLVRASIRRKK 463
RH G+D++RAS+R+KK
Sbjct: 61 RHRDRIHGADIIRASMRKKK 80
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,318,537
Number of extensions: 1047179
Number of successful extensions: 7814
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7073
Number of HSP's successfully gapped: 4
Length of query: 295
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 193
Effective length of database: 15,474,232
Effective search space: 2986526776
Effective search space used: 2986526776
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009668
(886 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127774.2| PREDICTED: LOW QUALITY PROTEIN: synaptotagmi... 260 6e-70
Alignment gi|XP_003357275.1| PREDICTED: synaptotagmin-like protein 2-like... 90 1e-18
Alignment gi|XP_003129760.1| PREDICTED: synaptotagmin-like protein 2-like... 90 1e-18
Alignment gi|XP_003129883.1| PREDICTED: exophilin-5 [Sus scrofa]. 50 1e-06
>ref|XP_003127774.2| PREDICTED: LOW QUALITY PROTEIN: synaptotagmin-like protein 1
isoform 1, partial [Sus scrofa].
Length = 509
Score = 260 bits (665), Expect = 6e-70
Identities = 137/183 (74%), Positives = 137/183 (74%)
Frame = +2
Query: 296 LRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRG 475
LRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRG
Sbjct: 1 LRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRG 60
Query: 476 DQARGSNGXXXXXXXXXXXXXXPRLPIDKAPQESLSEAEGPDFPSPYVPTKASDNXXXXX 655
DQARGSNG PRLPIDKAPQESLSEAEGPDFPSPYVPTKASDN
Sbjct: 61 DQARGSNGEAEAAGKETEEALEPRLPIDKAPQESLSEAEGPDFPSPYVPTKASDNEEEPP 120
Query: 656 XXXXXXXXDVQVXXXXXXXXXXXXXSGAEEEPQPRPAQTQEASEILGEWGGGPGPDPSLD 835
DVQV SGAEEEPQPRPAQTQEASEIL PGPDPSLD
Sbjct: 121 AQEAPGPADVQVPAAEEADPEPKPPSGAEEEPQPRPAQTQEASEILENGEEAPGPDPSLD 180
Query: 836 RML 844
RML
Sbjct: 181 RML 183
>ref|XP_003357275.1| PREDICTED: synaptotagmin-like protein 2-like isoform 2 [Sus
scrofa].
Length = 643
Score = 90.1 bits (222), Expect = 1e-18
Identities = 43/80 (53%), Positives = 62/80 (77%)
Frame = +2
Query: 224 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 403
++DLSFLTEEEQEAI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAK 60
Query: 404 RHHHTHLGSDLVRASIRRKK 463
RH G+D++RAS+R+K+
Sbjct: 61 RHRDKIHGADIIRASMRKKR 80
>ref|XP_003129760.1| PREDICTED: synaptotagmin-like protein 2-like isoform 1 [Sus
scrofa].
Length = 667
Score = 90.1 bits (222), Expect = 1e-18
Identities = 43/80 (53%), Positives = 62/80 (77%)
Frame = +2
Query: 224 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 403
++DLSFLTEEEQEAI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAK 60
Query: 404 RHHHTHLGSDLVRASIRRKK 463
RH G+D++RAS+R+K+
Sbjct: 61 RHRDKIHGADIIRASMRKKR 80
>ref|XP_003129883.1| PREDICTED: exophilin-5 [Sus scrofa].
Length = 1975
Score = 50.4 bits (119), Expect = 1e-06
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Frame = +2
Query: 230 DLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQRH 409
D SFL +EE I EVL+R+ L++ E+ R+ KL+ + D L +TG+WF+E + ++
Sbjct: 9 DFSFLNDEEARKILEVLERNEELQRAEKARISKLQKTKRDSRWLHGVTGEWFEEIQRKKF 68
Query: 410 HHTHLGSDLVRASI--RRKKG 466
+ S +++ + R +KG
Sbjct: 69 CNERDVSQMLKQPLTHRLRKG 89
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,707,120
Number of extensions: 661335
Number of successful extensions: 5406
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4639
Number of HSP's successfully gapped: 4
Length of query: 295
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 197
Effective length of database: 8,904,026
Effective search space: 1754093122
Effective search space used: 1754093122
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009668
(886 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003086438.1| PREDICTED: synaptotagmin-like protein 1-like... 242 2e-64
Alignment gi|XP_003086440.1| PREDICTED: synaptotagmin-like protein 1-like... 242 2e-64
Alignment gi|NP_113570.2| synaptotagmin-like protein 1 [Mus musculus]. 242 2e-64
Alignment gi|XP_003086439.1| PREDICTED: synaptotagmin-like protein 1-like... 219 3e-57
Alignment gi|NP_001035174.1| synaptotagmin-like protein 2 isoform 2 [Mus ... 91 9e-19
Alignment gi|NP_113571.2| synaptotagmin-like protein 2 isoform 3 [Mus mus... 91 9e-19
Alignment gi|NP_789816.2| exophilin-5 [Mus musculus]. 50 2e-06
>ref|XP_003086438.1| PREDICTED: synaptotagmin-like protein 1-like isoform 1 [Mus
musculus].
Length = 567
Score = 242 bits (618), Expect = 2e-64
Identities = 140/243 (57%), Positives = 155/243 (63%), Gaps = 6/243 (2%)
Frame = +2
Query: 134 MPQRGHPSQEGLRVLPGLLMAHEPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 313
MPQRGHPSQE L LP L MAH P E +GLLDLSFLTEEEQEAI++VLKRDAHLRQLEE
Sbjct: 1 MPQRGHPSQERLWALPSLPMAHGPGSEVEGLLDLSFLTEEEQEAISDVLKRDAHLRQLEE 60
Query: 314 GRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRGDQARGS 493
GRV KLRASLEDP QLKILTGDWFQEARSQRHHH H GSDLVRASIRRKK +GDQA GS
Sbjct: 61 GRVSKLRASLEDPWQLKILTGDWFQEARSQRHHHAHFGSDLVRASIRRKKSPKGDQALGS 120
Query: 494 NG-XXXXXXXXXXXXXXPRLPIDKAPQESLSEAEGPDFPSPYVPTKASDN-----XXXXX 655
+G R+ I+ A E +E +GPD SPYVP+KAS+
Sbjct: 121 DGEAEAAGENTIEGEPESRVSIEVAAPERSTETQGPDLSSPYVPSKASEGQEEEPQDQEC 180
Query: 656 XXXXXXXXDVQVXXXXXXXXXXXXXSGAEEEPQPRPAQTQEASEILGEWGGGPGPDPSLD 835
VQV AE+E QP PAQ++ S+IL PG PSLD
Sbjct: 181 ELEAPGEGGVQV---AEADPELDPEQKAEQESQPTPAQSKATSKILENGEEAPGLGPSLD 237
Query: 836 RML 844
RML
Sbjct: 238 RML 240
>ref|XP_003086440.1| PREDICTED: synaptotagmin-like protein 1-like isoform 3 [Mus
musculus].
Length = 577
Score = 242 bits (618), Expect = 2e-64
Identities = 140/243 (57%), Positives = 155/243 (63%), Gaps = 6/243 (2%)
Frame = +2
Query: 134 MPQRGHPSQEGLRVLPGLLMAHEPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 313
MPQRGHPSQE L LP L MAH P E +GLLDLSFLTEEEQEAI++VLKRDAHLRQLEE
Sbjct: 1 MPQRGHPSQERLWALPSLPMAHGPGSEVEGLLDLSFLTEEEQEAISDVLKRDAHLRQLEE 60
Query: 314 GRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRGDQARGS 493
GRV KLRASLEDP QLKILTGDWFQEARSQRHHH H GSDLVRASIRRKK +GDQA GS
Sbjct: 61 GRVSKLRASLEDPWQLKILTGDWFQEARSQRHHHAHFGSDLVRASIRRKKSPKGDQALGS 120
Query: 494 NG-XXXXXXXXXXXXXXPRLPIDKAPQESLSEAEGPDFPSPYVPTKASDN-----XXXXX 655
+G R+ I+ A E +E +GPD SPYVP+KAS+
Sbjct: 121 DGEAEAAGENTIEGEPESRVSIEVAAPERSTETQGPDLSSPYVPSKASEGQEEEPQDQEC 180
Query: 656 XXXXXXXXDVQVXXXXXXXXXXXXXSGAEEEPQPRPAQTQEASEILGEWGGGPGPDPSLD 835
VQV AE+E QP PAQ++ S+IL PG PSLD
Sbjct: 181 ELEAPGEGGVQV---AEADPELDPEQKAEQESQPTPAQSKATSKILENGEEAPGLGPSLD 237
Query: 836 RML 844
RML
Sbjct: 238 RML 240
>ref|NP_113570.2| synaptotagmin-like protein 1 [Mus musculus].
Length = 568
Score = 242 bits (618), Expect = 2e-64
Identities = 141/243 (58%), Positives = 156/243 (64%), Gaps = 6/243 (2%)
Frame = +2
Query: 134 MPQRGHPSQEGLRVLPGLLMAHEPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 313
MPQRGHPSQE L LP L MAH P EA+GLLDLSFLTEEEQEAI++VLKRDAHLRQLEE
Sbjct: 1 MPQRGHPSQERLWALPSLPMAHGPGSEAEGLLDLSFLTEEEQEAISDVLKRDAHLRQLEE 60
Query: 314 GRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRGDQARGS 493
GRV KLRASLEDP QLKILTGDWFQEARSQRHHH H GSDLVRASIRRKK +GDQA GS
Sbjct: 61 GRVSKLRASLEDPWQLKILTGDWFQEARSQRHHHAHFGSDLVRASIRRKKSPKGDQALGS 120
Query: 494 NG-XXXXXXXXXXXXXXPRLPIDKAPQESLSEAEGPDFPSPYVPTKASDN-----XXXXX 655
+G R+ I+ A E +E +GPD SPYVP+KAS+
Sbjct: 121 DGEAEAAGENTIEGEPESRVSIEVAAPERNTETQGPDLFSPYVPSKASEGQEEEPQDQEC 180
Query: 656 XXXXXXXXDVQVXXXXXXXXXXXXXSGAEEEPQPRPAQTQEASEILGEWGGGPGPDPSLD 835
VQV AE+E QP PAQ++ S+IL PG PSLD
Sbjct: 181 ELEAPGEGGVQV---AEADPELDPEQKAEQESQPTPAQSKATSKILENGEEAPGLGPSLD 237
Query: 836 RML 844
RML
Sbjct: 238 RML 240
>ref|XP_003086439.1| PREDICTED: synaptotagmin-like protein 1-like isoform 2 [Mus
musculus].
Length = 551
Score = 219 bits (557), Expect = 3e-57
Identities = 128/238 (53%), Positives = 144/238 (60%), Gaps = 1/238 (0%)
Frame = +2
Query: 134 MPQRGHPSQEGLRVLPGLLMAHEPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 313
MPQRGHPSQE L LP L MAH P E +GLLDLSFLTEEEQEAI++VLKRDAHLRQLEE
Sbjct: 1 MPQRGHPSQERLWALPSLPMAHGPGSEVEGLLDLSFLTEEEQEAISDVLKRDAHLRQLEE 60
Query: 314 GRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRGDQARGS 493
GRV KLRASLEDP QLKILTGDWFQEARSQRHHH H GSDLVRASIRRKK +GDQA GS
Sbjct: 61 GRVSKLRASLEDPWQLKILTGDWFQEARSQRHHHAHFGSDLVRASIRRKKSPKGDQALGS 120
Query: 494 NG-XXXXXXXXXXXXXXPRLPIDKAPQESLSEAEGPDFPSPYVPTKASDNXXXXXXXXXX 670
+G R+ I+ A E +E + + + S
Sbjct: 121 DGEAEAAGENTIEGEPESRVSIEVAAPERSTETQASEGQEEEPQDQESPGEGGVQVAEAD 180
Query: 671 XXXDVQVXXXXXXXXXXXXXSGAEEEPQPRPAQTQEASEILGEWGGGPGPDPSLDRML 844
D + AE+E QP PAQ++ S+IL PG PSLDRML
Sbjct: 181 PELDPE--------------QKAEQESQPTPAQSKATSKILENGEEAPGLGPSLDRML 224
>ref|NP_001035174.1| synaptotagmin-like protein 2 isoform 2 [Mus musculus].
Length = 934
Score = 91.3 bits (225), Expect = 9e-19
Identities = 44/80 (55%), Positives = 62/80 (77%)
Frame = +2
Query: 224 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 403
++DLSFLTEEEQ+AI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQDAILKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAK 60
Query: 404 RHHHTHLGSDLVRASIRRKK 463
RH G+D++RAS+RRKK
Sbjct: 61 RHRDKIHGADIIRASMRRKK 80
>ref|NP_113571.2| synaptotagmin-like protein 2 isoform 3 [Mus musculus].
Length = 910
Score = 91.3 bits (225), Expect = 9e-19
Identities = 44/80 (55%), Positives = 62/80 (77%)
Frame = +2
Query: 224 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 403
++DLSFLTEEEQ+AI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQDAILKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAK 60
Query: 404 RHHHTHLGSDLVRASIRRKK 463
RH G+D++RAS+RRKK
Sbjct: 61 RHRDKIHGADIIRASMRRKK 80
>ref|NP_789816.2| exophilin-5 [Mus musculus].
Length = 1960
Score = 50.4 bits (119), Expect = 2e-06
Identities = 24/59 (40%), Positives = 38/59 (64%)
Frame = +2
Query: 230 DLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQR 406
D SFL EEE I +VL+R+ LR+ E+ R+ KL+ + D L+ TG+WF+E + ++
Sbjct: 9 DFSFLNEEEARKILQVLERNEELRRAEKDRISKLQKTKRDIRWLQGATGEWFEEIQRKK 67
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,016,353
Number of extensions: 811245
Number of successful extensions: 5554
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4953
Number of HSP's successfully gapped: 7
Length of query: 295
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 194
Effective length of database: 12,583,923
Effective search space: 2441281062
Effective search space used: 2441281062
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009668
(886 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001180237.1| synaptotagmin-like protein 1 isoform 1 [Homo... 278 6e-75
Alignment gi|NP_116261.1| synaptotagmin-like protein 1 isoform 2 [Homo sa... 250 1e-66
Alignment gi|NP_116561.1| synaptotagmin-like protein 2 isoform a [Homo sa... 90 2e-18
Alignment gi|NP_001156425.1| synaptotagmin-like protein 2 isoform i [Homo... 90 2e-18
Alignment gi|NP_001156423.1| synaptotagmin-like protein 2 isoform g [Homo... 90 2e-18
Alignment gi|NP_055880.2| exophilin-5 [Homo sapiens]. 49 8e-06
>ref|NP_001180237.1| synaptotagmin-like protein 1 isoform 1 [Homo sapiens].
Length = 562
Score = 278 bits (710), Expect = 6e-75
Identities = 150/237 (63%), Positives = 164/237 (69%)
Frame = +2
Query: 134 MPQRGHPSQEGLRVLPGLLMAHEPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 313
MPQRGHPSQEGL LP L MAH P+PE +GLLDLSFLTEEEQEAIA VL+RDA LRQLEE
Sbjct: 1 MPQRGHPSQEGLWALPSLPMAHGPKPETEGLLDLSFLTEEEQEAIAGVLQRDARLRQLEE 60
Query: 314 GRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRGDQARGS 493
GRV KLRAS+ DPGQLKILTGDWFQEARSQRHH+ H GSDLVRAS+RRKK +RGDQA G
Sbjct: 61 GRVSKLRASVADPGQLKILTGDWFQEARSQRHHNAHFGSDLVRASMRRKKSTRGDQAPGH 120
Query: 494 NGXXXXXXXXXXXXXXPRLPIDKAPQESLSEAEGPDFPSPYVPTKASDNXXXXXXXXXXX 673
+ PRL ID+APQE L E EGPDFPSP VP KASD
Sbjct: 121 DREAEAAVKEKEEGPEPRLTIDEAPQERLRETEGPDFPSPSVPLKASDPEEASQAQEDPG 180
Query: 674 XXDVQVXXXXXXXXXXXXXSGAEEEPQPRPAQTQEASEILGEWGGGPGPDPSLDRML 844
D QV SG E+EP+P+ AQT+ AS+IL PGPDPSLDRML
Sbjct: 181 QGDQQV-CAEEADPELEPASGGEQEPRPQQAQTKAASQILENGEEAPGPDPSLDRML 236
>ref|NP_116261.1| synaptotagmin-like protein 1 isoform 2 [Homo sapiens].
Length = 550
Score = 250 bits (638), Expect = 1e-66
Identities = 138/237 (58%), Positives = 158/237 (66%)
Frame = +2
Query: 134 MPQRGHPSQEGLRVLPGLLMAHEPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 313
MPQRGHPSQEGL LP L MAH P+PE +GLLDLSFLTEEEQEAIA VL+RDA LRQLEE
Sbjct: 1 MPQRGHPSQEGLWALPSLPMAHGPKPETEGLLDLSFLTEEEQEAIAGVLQRDARLRQLEE 60
Query: 314 GRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRGDQARGS 493
GRV KLRAS+ DPGQLKILTGDWFQEARSQRHH+ H GSDLVRAS+RRKK +RGDQA G
Sbjct: 61 GRVSKLRASVADPGQLKILTGDWFQEARSQRHHNAHFGSDLVRASMRRKKSTRGDQAPGH 120
Query: 494 NGXXXXXXXXXXXXXXPRLPIDKAPQESLSEAEGPDFPSPYVPTKASDNXXXXXXXXXXX 673
+ PRL ID+APQE L E E D P ++A ++
Sbjct: 121 DREAEAAVKEKEEGPEPRLTIDEAPQERLRETEASD---PEEASQAQEDPGQGDQQVCAE 177
Query: 674 XXDVQVXXXXXXXXXXXXXSGAEEEPQPRPAQTQEASEILGEWGGGPGPDPSLDRML 844
D ++ SG E+EP+P+ AQT+ AS+IL PGPDPSLDRML
Sbjct: 178 EADPEL----------EPASGGEQEPRPQQAQTKAASQILENGEEAPGPDPSLDRML 224
>ref|NP_116561.1| synaptotagmin-like protein 2 isoform a [Homo sapiens].
Length = 910
Score = 90.1 bits (222), Expect = 2e-18
Identities = 43/80 (53%), Positives = 62/80 (77%)
Frame = +2
Query: 224 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 403
++DLSFLTEEEQEAI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAK 60
Query: 404 RHHHTHLGSDLVRASIRRKK 463
RH G+D++RAS+R+K+
Sbjct: 61 RHRDKIHGADIIRASMRKKR 80
>ref|NP_001156425.1| synaptotagmin-like protein 2 isoform i [Homo sapiens].
Length = 935
Score = 90.1 bits (222), Expect = 2e-18
Identities = 43/80 (53%), Positives = 62/80 (77%)
Frame = +2
Query: 224 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 403
++DLSFLTEEEQEAI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAK 60
Query: 404 RHHHTHLGSDLVRASIRRKK 463
RH G+D++RAS+R+K+
Sbjct: 61 RHRDKIHGADIIRASMRKKR 80
>ref|NP_001156423.1| synaptotagmin-like protein 2 isoform g [Homo sapiens].
Length = 934
Score = 90.1 bits (222), Expect = 2e-18
Identities = 43/80 (53%), Positives = 62/80 (77%)
Frame = +2
Query: 224 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 403
++DLSFLTEEEQEAI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAK 60
Query: 404 RHHHTHLGSDLVRASIRRKK 463
RH G+D++RAS+R+K+
Sbjct: 61 RHRDKIHGADIIRASMRKKR 80
>ref|NP_055880.2| exophilin-5 [Homo sapiens].
Length = 1989
Score = 48.5 bits (114), Expect = 8e-06
Identities = 22/59 (37%), Positives = 39/59 (66%)
Frame = +2
Query: 230 DLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQR 406
D SFL +EE I +VL+R+ L++ E+ R+ KL+ + D L+ +TG+WF+E + ++
Sbjct: 9 DFSFLNDEEARKILQVLERNEELQRAEKDRISKLQKTKRDIRWLQGVTGEWFEEIQRKK 67
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,434,853
Number of extensions: 1004563
Number of successful extensions: 7409
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6666
Number of HSP's successfully gapped: 6
Length of query: 295
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 193
Effective length of database: 14,934,836
Effective search space: 2882423348
Effective search space used: 2882423348
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009668
(886 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 460 e-127
>Sscrofa_Chr06
|| Length = 157765593
Score = 460 bits (232), Expect = e-127
Identities = 232/232 (100%)
Strand = Plus / Plus
Query: 93 cagggagccacgtgtgcccagcgggggcaccgccccagctgatgccccagaggggccacc 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78137694 cagggagccacgtgtgcccagcgggggcaccgccccagctgatgccccagaggggccacc 78137753
Query: 153 catctcaagaggggctccgggtcctgcctggcctcctcatggcacatgagccagagcctg 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78137754 catctcaagaggggctccgggtcctgcctggcctcctcatggcacatgagccagagcctg 78137813
Query: 213 aggctgatgggttactggacctcagcttcctgacggaggaggaacaggaagccattgctg 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78137814 aggctgatgggttactggacctcagcttcctgacggaggaggaacaggaagccattgctg 78137873
Query: 273 aggtcctgaagcgagatgcccacctacggcagctggaggagggacgggtcag 324
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78137874 aggtcctgaagcgagatgcccacctacggcagctggaggagggacgggtcag 78137925
Score = 305 bits (154), Expect = 2e-80
Identities = 154/154 (100%)
Strand = Plus / Plus
Query: 321 tcagaaagctccgggcatcactggaagaccctgggcagctgaagatcctaacaggggact 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78139430 tcagaaagctccgggcatcactggaagaccctgggcagctgaagatcctaacaggggact 78139489
Query: 381 ggttccaggaagcacgctcccagaggcaccaccacacccacctgggttctgacctagtcc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78139490 ggttccaggaagcacgctcccagaggcaccaccacacccacctgggttctgacctagtcc 78139549
Query: 441 gagcctccatccgcagaaagaagggctccagggg 474
||||||||||||||||||||||||||||||||||
Sbjct: 78139550 gagcctccatccgcagaaagaagggctccagggg 78139583
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 664 agcgcctgggccggcggacgttcaggtcccagccgcggaggaggcggacccggagccaaa 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78140796 agcgcctgggccggcggacgttcaggtcccagccgcggaggaggcggacccggagccaaa 78140855
Query: 724 gccgccgtcgggggcggaggaggagccgcagcccaggcctgctcag 769
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78140856 gccgccgtcgggggcggaggaggagccgcagcccaggcctgctcag 78140901
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 2 agtccctcactgctcttctgctccctgaaactcagctgccaggggagccggggctgccct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78135475 agtccctcactgctcttctgctccctgaaactcagctgccaggggagccggggctgccct 78135534
Query: 62 acgaagccgtcccctccatactggacccctacagg 96
|||||||||||||||||||||||||||||||||||
Sbjct: 78135535 acgaagccgtcccctccatactggacccctacagg 78135569
Score = 149 bits (75), Expect = 3e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 473 ggagaccaggctcggggcagcaatggggaggctgaggctgctgggaaagagaccgaagag 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78139805 ggagaccaggctcggggcagcaatggggaggctgaggctgctgggaaagagaccgaagag 78139864
Query: 533 gcgctggagcccagg 547
|||||||||||||||
Sbjct: 78139865 gcgctggagcccagg 78139879
Score = 149 bits (75), Expect = 3e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 591 agggacctgatttcccctcaccatatgtccccactaaggcatcagataatgaagaggagc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78140473 agggacctgatttcccctcaccatatgtccccactaaggcatcagataatgaagaggagc 78140532
Query: 651 ccccggcccaggaag 665
|||||||||||||||
Sbjct: 78140533 ccccggcccaggaag 78140547
Score = 143 bits (72), Expect = 2e-31
Identities = 92/96 (95%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 765 ctcagacccaggaggcgtccgaaatcctgggagaatggggaggaggccccggg-cctgac 823
|||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||
Sbjct: 78141043 ctcagacccaggaggcgtccgagatcctgg-agaatggggaggaggccccggggcctgac 78141101
Query: 824 ccctcactggaccgtatgctcagcaccagctcctcc 859
||||||||||||||||||||||||| ||||||||||
Sbjct: 78141102 ccctcactggaccgtatgctcagcagcagctcctcc 78141137
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 544 caggctccccatagacaaggccccccaagagagtctcagcgaggctgagg 593
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78139958 caggctccccatagacaaggccccccaagagagtctcagcgaggctgagg 78140007
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,999,551
Number of extensions: 219
Number of successful extensions: 219
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 8
Length of query: 886
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 865
Effective length of database: 2,808,413,156
Effective search space: 2429277379940
Effective search space used: 2429277379940
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)