Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009707
(977 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039718.2| hypothetical protein LOC520712 [Bos taurus]. 325 4e-89
>ref|NP_001039718.2| hypothetical protein LOC520712 [Bos taurus].
Length = 217
Score = 325 bits (833), Expect = 4e-89
Identities = 164/212 (77%), Positives = 175/212 (82%)
Frame = +1
Query: 271 MASQERVETVTKGTGFWRCPKPAAYTPRTCELLRAMMKESKLTNFQQRHIMDTMKRGDAL 450
MASQERVETVTKGTGFWRCPKP YTP TCELLR MMKESKLTNFQQRHI DTMKRGD L
Sbjct: 1 MASQERVETVTKGTGFWRCPKPTTYTPGTCELLRVMMKESKLTNFQQRHITDTMKRGDTL 60
Query: 451 PLHCSPTSSQKVLPARQPASAIYLPPILAARSHLRPASLCQANGAYSREHFRPQATRDLE 630
PL C+PTSSQ+VLP++QP+SAIYLPPILAARSHLRPA CQANGAYSRE F+PQATRDLE
Sbjct: 61 PLQCNPTSSQRVLPSKQPSSAIYLPPILAARSHLRPAWRCQANGAYSREQFKPQATRDLE 120
Query: 631 KEKRRLQNIFATGXXXXXXXXXXXXXXXXXXXXXLDRFEELVKEIQERKAFLADMEALGQ 810
EKRRLQNIFATG LDRFEELVKEIQERK FLADMEALGQ
Sbjct: 121 MEKRRLQNIFATGKEPEERKRKPHPLRQEDPAPKLDRFEELVKEIQERKEFLADMEALGQ 180
Query: 811 GRRYRGVILTEISQKLQEMGDL*RKKSEELXR 906
GR+YRG+ILTEISQKLQEM D+ K+SEEL +
Sbjct: 181 GRQYRGIILTEISQKLQEMEDIDHKRSEELRK 212
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,504,737
Number of extensions: 1451976
Number of successful extensions: 8387
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8290
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 223
Effective length of database: 14,306,398
Effective search space: 3190326754
Effective search space used: 3190326754
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009707
(977 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538380.2| PREDICTED: similar to Hypothetical UPF0193 prot... 335 5e-92
>ref|XP_538380.2| PREDICTED: similar to Hypothetical UPF0193 protein EVG1 [Canis
familiaris].
Length = 280
Score = 335 bits (858), Expect = 5e-92
Identities = 169/229 (73%), Positives = 183/229 (79%)
Frame = +1
Query: 262 SPPMASQERVETVTKGTGFWRCPKPAAYTPRTCELLRAMMKESKLTNFQQRHIMDTMKRG 441
SPPMASQER+E VTKGTGFWRCPKPA YTP TCELLR MMKESKLTNFQQRHIMDTMKRG
Sbjct: 52 SPPMASQERIEAVTKGTGFWRCPKPATYTPGTCELLRVMMKESKLTNFQQRHIMDTMKRG 111
Query: 442 DALPLHCSPTSSQKVLPARQPASAIYLPPILAARSHLRPASLCQANGAYSREHFRPQATR 621
D LPL CSPTSSQ+VLP++Q S IYLPPILAAR HLRPAS+CQANGAYSRE F+PQA R
Sbjct: 112 DTLPLQCSPTSSQRVLPSKQTTSTIYLPPILAARPHLRPASMCQANGAYSREPFKPQAPR 171
Query: 622 DLEKEKRRLQNIFATGXXXXXXXXXXXXXXXXXXXXXLDRFEELVKEIQERKAFLADMEA 801
DLEKEKRRLQNIFATG LDRFEELVKEIQERK FLA MEA
Sbjct: 172 DLEKEKRRLQNIFATGKDLKEQKRKPPPVQQKDPAPELDRFEELVKEIQERKEFLAGMEA 231
Query: 802 LGQGRRYRGVILTEISQKLQEMGDL*RKKSEELXRLWPPLNLSPEPAGE 948
LGQGR+YRG+IL EISQKL+EM D+ K++E+L RL P +LSPE E
Sbjct: 232 LGQGRQYRGIILAEISQKLREMEDIDHKRNEDLRRLLLPPDLSPETGAE 280
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,480,542
Number of extensions: 1501471
Number of successful extensions: 8702
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8610
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 222
Effective length of database: 15,440,896
Effective search space: 3427878912
Effective search space used: 3427878912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009707
(977 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925478.1| PREDICTED: UPF0193 protein EVG1 isoform 1 [S... 359 1e-99
Alignment gi|XP_003126079.1| PREDICTED: UPF0193 protein EVG1 isoform 2 [S... 285 2e-77
>ref|XP_001925478.1| PREDICTED: UPF0193 protein EVG1 isoform 1 [Sus scrofa].
Length = 217
Score = 359 bits (921), Expect = 1e-99
Identities = 184/212 (86%), Positives = 187/212 (88%)
Frame = +1
Query: 271 MASQERVETVTKGTGFWRCPKPAAYTPRTCELLRAMMKESKLTNFQQRHIMDTMKRGDAL 450
MASQERVETVTKGTGFWRCPKPAAYTPRTCELLRAMMKESKLTNFQQRHIMDTMKRGDAL
Sbjct: 1 MASQERVETVTKGTGFWRCPKPAAYTPRTCELLRAMMKESKLTNFQQRHIMDTMKRGDAL 60
Query: 451 PLHCSPTSSQKVLPARQPASAIYLPPILAARSHLRPASLCQANGAYSREHFRPQATRDLE 630
PLHCSPTSSQ+VLPARQPASAIYLPPILAARSHLRPASLCQANGAYSRE FRPQATRDLE
Sbjct: 61 PLHCSPTSSQRVLPARQPASAIYLPPILAARSHLRPASLCQANGAYSREQFRPQATRDLE 120
Query: 631 KEKRRLQNIFATGXXXXXXXXXXXXXXXXXXXXXLDRFEELVKEIQERKAFLADMEALGQ 810
KEKRRLQNIFATG LDRFEELVKEIQERKAFLADMEALGQ
Sbjct: 121 KEKRRLQNIFATGKEPEERKRKPPPVQQEAPAPELDRFEELVKEIQERKAFLADMEALGQ 180
Query: 811 GRRYRGVILTEISQKLQEMGDL*RKKSEELXR 906
GRRYRGVILTEISQKLQEM DL RK+SEEL +
Sbjct: 181 GRRYRGVILTEISQKLQEMEDLDRKRSEELRK 212
>ref|XP_003126079.1| PREDICTED: UPF0193 protein EVG1 isoform 2 [Sus scrofa].
Length = 182
Score = 285 bits (730), Expect = 2e-77
Identities = 149/177 (84%), Positives = 152/177 (85%)
Frame = +1
Query: 376 MMKESKLTNFQQRHIMDTMKRGDALPLHCSPTSSQKVLPARQPASAIYLPPILAARSHLR 555
MMKESKLTNFQQRHIMDTMKRGDALPLHCSPTSSQ+VLPARQPASAIYLPPILAARSHLR
Sbjct: 1 MMKESKLTNFQQRHIMDTMKRGDALPLHCSPTSSQRVLPARQPASAIYLPPILAARSHLR 60
Query: 556 PASLCQANGAYSREHFRPQATRDLEKEKRRLQNIFATGXXXXXXXXXXXXXXXXXXXXXL 735
PASLCQANGAYSRE FRPQATRDLEKEKRRLQNIFATG L
Sbjct: 61 PASLCQANGAYSREQFRPQATRDLEKEKRRLQNIFATGKEPEERKRKPPPVQQEAPAPEL 120
Query: 736 DRFEELVKEIQERKAFLADMEALGQGRRYRGVILTEISQKLQEMGDL*RKKSEELXR 906
DRFEELVKEIQERKAFLADMEALGQGRRYRGVILTEISQKLQEM DL RK+SEEL +
Sbjct: 121 DRFEELVKEIQERKAFLADMEALGQGRRYRGVILTEISQKLQEMEDLDRKRSEELRK 177
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,190,857
Number of extensions: 943579
Number of successful extensions: 5492
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5454
Number of HSP's successfully gapped: 2
Length of query: 325
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,879,129
Effective search space: 2006683154
Effective search space used: 2006683154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009707
(977 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_613047.1| hypothetical protein LOC27660 [Mus musculus]. 287 8e-78
>ref|NP_613047.1| hypothetical protein LOC27660 [Mus musculus].
Length = 216
Score = 287 bits (735), Expect = 8e-78
Identities = 150/212 (70%), Positives = 168/212 (79%)
Frame = +1
Query: 271 MASQERVETVTKGTGFWRCPKPAAYTPRTCELLRAMMKESKLTNFQQRHIMDTMKRGDAL 450
MASQERV++VTKGTGF RC K A YTP TCELLR MMKESKLTNFQQRHIMDTMKRG L
Sbjct: 1 MASQERVDSVTKGTGFRRCRKQAGYTPGTCELLRVMMKESKLTNFQQRHIMDTMKRGAPL 60
Query: 451 PLHCSPTSSQKVLPARQPASAIYLPPILAARSHLRPASLCQANGAYSREHFRPQATRDLE 630
PL C+PTSS + P+++ ASAIYLPPILA SHLRPASLCQANGAYSRE F+PQATRDLE
Sbjct: 61 PLQCNPTSSLRGSPSKKAASAIYLPPILATHSHLRPASLCQANGAYSREQFKPQATRDLE 120
Query: 631 KEKRRLQNIFATGXXXXXXXXXXXXXXXXXXXXXLDRFEELVKEIQERKAFLADMEALGQ 810
KEKRRLQNIFATG LDRF+ELVKEIQ+RK FLA MEALGQ
Sbjct: 121 KEKRRLQNIFATG-KDKEERKKVPHVRQEDPAPELDRFDELVKEIQDRKEFLAAMEALGQ 179
Query: 811 GRRYRGVILTEISQKLQEMGDL*RKKSEELXR 906
GR+YR +IL EISQKL+EM D+ R++S+EL +
Sbjct: 180 GRQYRSIILAEISQKLREMEDIDRRRSKELRK 211
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,237,832
Number of extensions: 1194732
Number of successful extensions: 6279
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6213
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 223
Effective length of database: 12,553,887
Effective search space: 2799516801
Effective search space used: 2799516801
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009707
(977 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115950.3| hypothetical protein LOC84645 isoform 1 [Homo s... 297 9e-81
Alignment gi|NP_001193991.1| hypothetical protein LOC84645 isoform 2 [Hom... 248 6e-66
>ref|NP_115950.3| hypothetical protein LOC84645 isoform 1 [Homo sapiens].
Length = 217
Score = 297 bits (761), Expect = 9e-81
Identities = 152/212 (71%), Positives = 170/212 (80%)
Frame = +1
Query: 271 MASQERVETVTKGTGFWRCPKPAAYTPRTCELLRAMMKESKLTNFQQRHIMDTMKRGDAL 450
MASQ+++E VTKGTGF R PK YTP TCELLR MMKESKLTN QQRHIMD MKRGDAL
Sbjct: 1 MASQKQMEVVTKGTGFRRRPKTITYTPGTCELLRVMMKESKLTNIQQRHIMDIMKRGDAL 60
Query: 451 PLHCSPTSSQKVLPARQPASAIYLPPILAARSHLRPASLCQANGAYSREHFRPQATRDLE 630
PL CSPTSSQ+VLP++Q AS IYLPPILAAR HLRPA++CQANGAYSRE F+PQATRDLE
Sbjct: 61 PLQCSPTSSQRVLPSKQIASPIYLPPILAARPHLRPANMCQANGAYSREQFKPQATRDLE 120
Query: 631 KEKRRLQNIFATGXXXXXXXXXXXXXXXXXXXXXLDRFEELVKEIQERKAFLADMEALGQ 810
KEK+RLQNIFATG LDRFEELVKEIQERK FLADMEALGQ
Sbjct: 121 KEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVKEIQERKEFLADMEALGQ 180
Query: 811 GRRYRGVILTEISQKLQEMGDL*RKKSEELXR 906
G++YRG+IL EISQKL+EM D+ ++SEEL +
Sbjct: 181 GKQYRGIILAEISQKLREMEDIDHRRSEELRK 212
>ref|NP_001193991.1| hypothetical protein LOC84645 isoform 2 [Homo sapiens].
Length = 196
Score = 248 bits (633), Expect = 6e-66
Identities = 133/212 (62%), Positives = 151/212 (71%)
Frame = +1
Query: 271 MASQERVETVTKGTGFWRCPKPAAYTPRTCELLRAMMKESKLTNFQQRHIMDTMKRGDAL 450
MASQ+++E VTKGTGF R PK YTP TCELLR GDAL
Sbjct: 1 MASQKQMEVVTKGTGFRRRPKTITYTPGTCELLRG---------------------GDAL 39
Query: 451 PLHCSPTSSQKVLPARQPASAIYLPPILAARSHLRPASLCQANGAYSREHFRPQATRDLE 630
PL CSPTSSQ+VLP++Q AS IYLPPILAAR HLRPA++CQANGAYSRE F+PQATRDLE
Sbjct: 40 PLQCSPTSSQRVLPSKQIASPIYLPPILAARPHLRPANMCQANGAYSREQFKPQATRDLE 99
Query: 631 KEKRRLQNIFATGXXXXXXXXXXXXXXXXXXXXXLDRFEELVKEIQERKAFLADMEALGQ 810
KEK+RLQNIFATG LDRFEELVKEIQERK FLADMEALGQ
Sbjct: 100 KEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVKEIQERKEFLADMEALGQ 159
Query: 811 GRRYRGVILTEISQKLQEMGDL*RKKSEELXR 906
G++YRG+IL EISQKL+EM D+ ++SEEL +
Sbjct: 160 GKQYRGIILAEISQKLREMEDIDHRRSEELRK 191
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,450,277
Number of extensions: 1456022
Number of successful extensions: 8388
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8284
Number of HSP's successfully gapped: 2
Length of query: 325
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 222
Effective length of database: 14,901,872
Effective search space: 3308215584
Effective search space used: 3308215584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009707
(977 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 517 e-144
>Sscrofa_Chr05
|| Length = 111506441
Score = 517 bits (261), Expect = e-144
Identities = 261/261 (100%)
Strand = Plus / Plus
Query: 1 gcttgttaccatggtagccagagtgtataaccagagcttgagcagcggagatctcaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7316084 gcttgttaccatggtagccagagtgtataaccagagcttgagcagcggagatctcaaaag 7316143
Query: 61 cattcctgcagggctccggcgcgggtgctccttcagagcctagcggccactctcagtggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7316144 cattcctgcagggctccggcgcgggtgctccttcagagcctagcggccactctcagtggg 7316203
Query: 121 cacccagccggagtcttacctaagagtgaggtttccgtttgggtctatcacacaacgggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7316204 cacccagccggagtcttacctaagagtgaggtttccgtttgggtctatcacacaacgggc 7316263
Query: 181 aaggttaccctaacgcccctttcctccagaggtggcttccctgccacaggcgccgggtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7316264 aaggttaccctaacgcccctttcctccagaggtggcttccctgccacaggcgccgggtct 7316323
Query: 241 ggatgaggtctctgttcgcat 261
|||||||||||||||||||||
Sbjct: 7316324 ggatgaggtctctgttcgcat 7316344
Score = 517 bits (261), Expect = e-144
Identities = 261/261 (100%)
Strand = Plus / Plus
Query: 1 gcttgttaccatggtagccagagtgtataaccagagcttgagcagcggagatctcaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7384110 gcttgttaccatggtagccagagtgtataaccagagcttgagcagcggagatctcaaaag 7384169
Query: 61 cattcctgcagggctccggcgcgggtgctccttcagagcctagcggccactctcagtggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7384170 cattcctgcagggctccggcgcgggtgctccttcagagcctagcggccactctcagtggg 7384229
Query: 121 cacccagccggagtcttacctaagagtgaggtttccgtttgggtctatcacacaacgggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7384230 cacccagccggagtcttacctaagagtgaggtttccgtttgggtctatcacacaacgggc 7384289
Query: 181 aaggttaccctaacgcccctttcctccagaggtggcttccctgccacaggcgccgggtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7384290 aaggttaccctaacgcccctttcctccagaggtggcttccctgccacaggcgccgggtct 7384349
Query: 241 ggatgaggtctctgttcgcat 261
|||||||||||||||||||||
Sbjct: 7384350 ggatgaggtctctgttcgcat 7384370
Score = 333 bits (168), Expect = 1e-88
Identities = 180/184 (97%)
Strand = Plus / Plus
Query: 437 gaggagacgctctcccgttacactgcagcccaacttccagccagaaggtcttgcctgcca 496
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 7320889 gaggagacgctctcccgttacactgcagcccaacttccagccagagggtcttgcctgcca 7320948
Query: 497 ggcagccagcctcggccatctacctgccacccatcctggcagcccggtcccacctccgac 556
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 7320949 ggcagccggcctcggccatctacctgccacccatcctggcagcccggtcccacctccggc 7321008
Query: 557 ctgccagcctgtgccaagccaacggggcctacagccgggagcacttcaggcctcaagcca 616
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 7321009 ctgccagcctgtgccaagccaacggggcctacagccgggagcagttcaggcctcaagcca 7321068
Query: 617 cccg 620
||||
Sbjct: 7321069 cccg 7321072
Score = 333 bits (168), Expect = 1e-88
Identities = 180/184 (97%)
Strand = Plus / Plus
Query: 437 gaggagacgctctcccgttacactgcagcccaacttccagccagaaggtcttgcctgcca 496
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 7388909 gaggagacgctctcccgttacactgcagcccaacttccagccagagggtcttgcctgcca 7388968
Query: 497 ggcagccagcctcggccatctacctgccacccatcctggcagcccggtcccacctccgac 556
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 7388969 ggcagccggcctcggccatctacctgccacccatcctggcagcccggtcccacctccggc 7389028
Query: 557 ctgccagcctgtgccaagccaacggggcctacagccgggagcacttcaggcctcaagcca 616
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 7389029 ctgccagcctgtgccaagccaacggggcctacagccgggagcagttcaggcctcaagcca 7389088
Query: 617 cccg 620
||||
Sbjct: 7389089 cccg 7389092
Score = 262 bits (132), Expect = 3e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 620 gggatctggagaaggagaagcgaagactccagaatatttttgccacggggaaggagccag 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7321785 gggatctggagaaggagaagcgaagactccagaatatttttgccacggggaaggagccag 7321844
Query: 680 aggaaaggaagagaaagccccctcctgtgcagcaggaggccccagcgcctgagctggacc 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7321845 aggaaaggaagagaaagccccctcctgtgcagcaggaggccccagcgcctgagctggacc 7321904
Query: 740 ggtttgaagaac 751
||||||||||||
Sbjct: 7321905 ggtttgaagaac 7321916
Score = 262 bits (132), Expect = 3e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 620 gggatctggagaaggagaagcgaagactccagaatatttttgccacggggaaggagccag 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7389805 gggatctggagaaggagaagcgaagactccagaatatttttgccacggggaaggagccag 7389864
Query: 680 aggaaaggaagagaaagccccctcctgtgcagcaggaggccccagcgcctgagctggacc 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7389865 aggaaaggaagagaaagccccctcctgtgcagcaggaggccccagcgcctgagctggacc 7389924
Query: 740 ggtttgaagaac 751
||||||||||||
Sbjct: 7389925 ggtttgaagaac 7389936
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 262 agccctcccatggcttcccaggagagggtggagactgtgaccaaaggaactggcttctgg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7316535 agccctcccatggcttcccaggagagggtggagactgtgaccaaaggaactggcttctgg 7316594
Query: 322 cgctgccccaagccggccgcttacaccccaagaacctgcgagctgctcagag 373
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7316595 cgctgccccaagccggccgcttacaccccaagaacctgcgagctgctcagag 7316646
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 262 agccctcccatggcttcccaggagagggtggagactgtgaccaaaggaactggcttctgg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7384561 agccctcccatggcttcccaggagagggtggagactgtgaccaaaggaactggcttctgg 7384620
Query: 322 cgctgccccaagccggccgcttacaccccaagaacctgcgagctgctcagag 373
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7384621 cgctgccccaagccggccgcttacaccccaagaacctgcgagctgctcagag 7384672
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 752 tggtgaaggaaatccaggagaggaaagcgttcttggctgacatggaggccctggggcagg 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7322096 tggtgaaggaaatccaggagaggaaagcgttcttggctgacatggaggccctggggcagg 7322155
Query: 812 gcaggcggtaccgaggggtcatcctcaccgaaatctcccag 852
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 7322156 gcaggcggtaccgaggggtcatcctcaccgaaatctcccag 7322196
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 752 tggtgaaggaaatccaggagaggaaagcgttcttggctgacatggaggccctggggcagg 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7390116 tggtgaaggaaatccaggagaggaaagcgttcttggctgacatggaggccctggggcagg 7390175
Query: 812 gcaggcggtaccgaggggtcatcctcaccgaaatctcccag 852
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 7390176 gcaggcggtaccgaggggtcatcctcaccgaaatctcccag 7390216
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 372 agccatgatgaaggaatccaaactgactaacttccaacagcgccacatcatggacaccat 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7317872 agccatgatgaaggaatccaaactgactaacttccaacagcgccacatcatggacaccat 7317931
Query: 432 gaaa 435
||||
Sbjct: 7317932 gaaa 7317935
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 372 agccatgatgaaggaatccaaactgactaacttccaacagcgccacatcatggacaccat 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7385894 agccatgatgaaggaatccaaactgactaacttccaacagcgccacatcatggacaccat 7385953
Query: 432 gaaa 435
||||
Sbjct: 7385954 gaaa 7385957
Score = 125 bits (63), Expect = 5e-26
Identities = 115/130 (88%), Gaps = 2/130 (1%)
Strand = Plus / Plus
Query: 850 cagaaactacaggagatgggagacctttgacgcaagaagagcgaggaacttng-aaggct 908
||||||||||||||||||| ||||||| ||||||| ||||||||||||| | ||||||
Sbjct: 7322318 cagaaactacaggagatggaagaccttgaccgcaagaggagcgaggaacttaggaaggct 7322377
Query: 909 ctggccaccccttaatctgtctccagagcccgcgggggagcccaccct-cttcaccaaaa 967
|||||||||||||||||||||||||||| || |||||||||||||| || ||||||||
Sbjct: 7322378 ctggccaccccttaatctgtctccagaggccagcggggagcccaccctcctccaccaaaa 7322437
Query: 968 attaccccct 977
||||||||
Sbjct: 7322438 cctaccccct 7322447
Score = 125 bits (63), Expect = 5e-26
Identities = 115/130 (88%), Gaps = 2/130 (1%)
Strand = Plus / Plus
Query: 850 cagaaactacaggagatgggagacctttgacgcaagaagagcgaggaacttng-aaggct 908
||||||||||||||||||| ||||||| ||||||| ||||||||||||| | ||||||
Sbjct: 7390338 cagaaactacaggagatggaagaccttgaccgcaagaggagcgaggaacttaggaaggct 7390397
Query: 909 ctggccaccccttaatctgtctccagagcccgcgggggagcccaccct-cttcaccaaaa 967
|||||||||||||||||||||||||||| || |||||||||||||| || ||||||||
Sbjct: 7390398 ctggccaccccttaatctgtctccagaggccagcggggagcccaccctcctccaccaaaa 7390457
Query: 968 attaccccct 977
||||||||
Sbjct: 7390458 cctaccccct 7390467
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,183,289
Number of extensions: 284
Number of successful extensions: 284
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 14
Length of query: 977
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 956
Effective length of database: 2,808,413,156
Effective search space: 2684842977136
Effective search space used: 2684842977136
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)