Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009715
(1037 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070368.1| heterogeneous nuclear ribonucleoprotein L-li... 398 e-115
Alignment gi|NP_001178959.1| heterogeneous nuclear ribonucleoprotein L [B... 216 9e-59
Alignment gi|XP_002695026.1| PREDICTED: heterogeneous nuclear ribonucleop... 216 9e-59
Alignment gi|NP_776867.1| polypyrimidine tract-binding protein 1 [Bos tau... 76 6e-14
Alignment gi|NP_001103551.1| polypyrimidine tract-binding protein 2 [Bos ... 55 1e-07
Alignment gi|XP_002686267.1| PREDICTED: polypyrimidine tract binding prot... 54 2e-07
>ref|NP_001070368.1| heterogeneous nuclear ribonucleoprotein L-like [Bos taurus].
Length = 541
Score = 398 bits (1023), Expect(2) = e-115
Identities = 202/230 (87%), Positives = 204/230 (88%)
Frame = +2
Query: 302 RETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPXXXXXXXXXXXXXQPEAGGXX 481
RETYEEDR+YESQAKRLKTEEGEIDYSAEEGENRREATP QPEAGG
Sbjct: 9 RETYEEDRDYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGRSFSQPEAGGSH 68
Query: 482 XXXXXXXXXXXRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVT 661
RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVT
Sbjct: 69 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVT 128
Query: 662 FAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 841
FAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC
Sbjct: 129 FAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 188
Query: 842 NPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKM 991
NPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK+
Sbjct: 189 NPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 238
Score = 35.8 bits (81), Expect(2) = e-115
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +1
Query: 985 KNEYARPTRLNVIRNDN 1035
K EYARPTRLNVIRNDN
Sbjct: 237 KIEYARPTRLNVIRNDN 253
>ref|NP_001178959.1| heterogeneous nuclear ribonucleoprotein L [Bos taurus].
Length = 588
Score = 216 bits (551), Expect(2) = 9e-59
Identities = 105/159 (66%), Positives = 130/159 (81%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
RGL + VVEADLVEAL++FG I YV++MP KRQALVEFE++ A V +AAD +YIAG
Sbjct: 106 RGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAG 165
Query: 695 QQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVI 874
AF NYSTS++I+RPG++DD N VLL +I NP+Y IT DVLYT+CNP G VQRIVI
Sbjct: 166 HPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVI 225
Query: 875 FKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKM 991
F++NG+QAMVEF+SV AQ+AKA+LNGADIY+GCCTLK+
Sbjct: 226 FRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKI 264
Score = 29.6 bits (65), Expect(2) = 9e-59
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 985 KNEYARPTRLNVIRND 1032
K EYA+PTRLNV +ND
Sbjct: 263 KIEYAKPTRLNVFKND 278
>ref|XP_002695026.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Bos taurus].
Length = 588
Score = 216 bits (551), Expect(2) = 9e-59
Identities = 105/159 (66%), Positives = 130/159 (81%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
RGL + VVEADLVEAL++FG I YV++MP KRQALVEFE++ A V +AAD +YIAG
Sbjct: 106 RGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAG 165
Query: 695 QQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVI 874
AF NYSTS++I+RPG++DD N VLL +I NP+Y IT DVLYT+CNP G VQRIVI
Sbjct: 166 HPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVI 225
Query: 875 FKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKM 991
F++NG+QAMVEF+SV AQ+AKA+LNGADIY+GCCTLK+
Sbjct: 226 FRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKI 264
Score = 29.6 bits (65), Expect(2) = 9e-59
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 985 KNEYARPTRLNVIRND 1032
K EYA+PTRLNV +ND
Sbjct: 263 KIEYAKPTRLNVFKND 278
>ref|NP_776867.1| polypyrimidine tract-binding protein 1 [Bos taurus].
Length = 531
Score = 75.9 bits (185), Expect = 6e-14
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 33/193 (17%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
R L V E +++ FG + ++M+ K QA +E ++A V + + G
Sbjct: 64 RKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMHTEEAANTMVNYYTSVTPVLRG 123
Query: 695 QQAFFNYSTSKRITRPGNTDDP--------------------------------SGGNKV 778
Q + +S K + + + +G + V
Sbjct: 124 QPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPV 183
Query: 779 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAALNG 955
L + ++N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ AK +L+G
Sbjct: 184 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDG 243
Query: 956 ADIYAGCCTLKMN 994
+IY CCTL+++
Sbjct: 244 QNIYNACCTLRID 256
>ref|NP_001103551.1| polypyrimidine tract-binding protein 2 [Bos taurus].
Length = 255
Score = 54.7 bits (130), Expect = 1e-07
Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 30/175 (17%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
R L V E +++ FG + ++M+ K QA +E ++A V + + ++
Sbjct: 64 RKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRN 123
Query: 695 QQAFFNYSTSKR-----------------ITRPGNTDDPSGG------------NKVLLL 787
Q + YS K +T + P G + VL +
Sbjct: 124 QPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRI 183
Query: 788 SIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAAL 949
I N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ+AK +
Sbjct: 184 IIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLGI 238
>ref|XP_002686267.1| PREDICTED: polypyrimidine tract binding protein 2-like [Bos
taurus].
Length = 496
Score = 54.3 bits (129), Expect = 2e-07
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 30/172 (17%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
R L V E +++ FG + ++M+ K QA +E ++A V + + ++
Sbjct: 33 RKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRN 92
Query: 695 QQAFFNYSTSKR-----------------ITRPGNTDDPSGG------------NKVLLL 787
Q + YS K +T + P G + VL +
Sbjct: 93 QPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRI 152
Query: 788 SIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAK 940
I N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ+AK
Sbjct: 153 IIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAK 204
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,310,594
Number of extensions: 727687
Number of successful extensions: 2171
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2162
Number of HSP's successfully gapped: 9
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009715
(1037 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532938.2| PREDICTED: similar to heterogeneous nuclear rib... 385 e-111
Alignment gi|XP_867282.1| PREDICTED: similar to heterogeneous nuclear rib... 216 1e-58
Alignment gi|XP_853392.1| PREDICTED: similar to heterogeneous nuclear rib... 216 1e-58
Alignment gi|XP_533677.1| PREDICTED: similar to heterogeneous nuclear rib... 216 1e-58
Alignment gi|XP_867259.1| PREDICTED: similar to heterogeneous nuclear rib... 216 1e-58
Alignment gi|XP_867272.1| PREDICTED: similar to heterogeneous nuclear rib... 216 1e-58
Alignment gi|XP_868641.1| PREDICTED: similar to Polypyrimidine tract-bind... 76 6e-14
Alignment gi|XP_868639.1| PREDICTED: similar to polypyrimidine tract-bind... 76 6e-14
Alignment gi|XP_868637.1| PREDICTED: similar to polypyrimidine tract-bind... 76 6e-14
Alignment gi|XP_868634.1| PREDICTED: similar to polypyrimidine tract-bind... 76 6e-14
>ref|XP_532938.2| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein
L-like [Canis familiaris].
Length = 548
Score = 385 bits (988), Expect(2) = e-111
Identities = 201/237 (84%), Positives = 202/237 (85%), Gaps = 7/237 (2%)
Frame = +2
Query: 302 RETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPXXXXXXXXXXXXX----QPEA 469
RETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATP QPEA
Sbjct: 9 RETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGYGGGGGGAGRSFSQPEA 68
Query: 470 GGXXXXXXXXXXXXXRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAK 649
GG RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAK
Sbjct: 69 GGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAK 128
Query: 650 ECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVL 829
ECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVL
Sbjct: 129 ECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVL 188
Query: 830 YTVCNPVGKVQRIVIFKRNGIQAMVE---FESVLCAQKAKAALNGADIYAGCCTLKM 991
YTVCNPVGKVQRIVIFKRNGIQAM FESVLCAQKAKAALNGADIYAGCCTLK+
Sbjct: 189 YTVCNPVGKVQRIVIFKRNGIQAMTSDLMFESVLCAQKAKAALNGADIYAGCCTLKI 245
Score = 35.8 bits (81), Expect(2) = e-111
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +1
Query: 985 KNEYARPTRLNVIRNDN 1035
K EYARPTRLNVIRNDN
Sbjct: 244 KIEYARPTRLNVIRNDN 260
>ref|XP_867282.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein L
isoform a isoform 5 [Canis familiaris].
Length = 598
Score = 216 bits (551), Expect(2) = 1e-58
Identities = 105/159 (66%), Positives = 130/159 (81%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
RGL + VVEADLVEAL++FG I YV++MP KRQALVEFE++ A V +AAD +YIAG
Sbjct: 106 RGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAG 165
Query: 695 QQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVI 874
AF NYSTS++I+RPG++DD N VLL +I NP+Y IT DVLYT+CNP G VQRIVI
Sbjct: 166 HPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVI 225
Query: 875 FKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKM 991
F++NG+QAMVEF+SV AQ+AKA+LNGADIY+GCCTLK+
Sbjct: 226 FRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKI 264
Score = 29.6 bits (65), Expect(2) = 1e-58
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 985 KNEYARPTRLNVIRND 1032
K EYA+PTRLNV +ND
Sbjct: 263 KIEYAKPTRLNVFKND 278
>ref|XP_853392.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein L
isoform a isoform 2 [Canis familiaris].
Length = 589
Score = 216 bits (551), Expect(2) = 1e-58
Identities = 105/159 (66%), Positives = 130/159 (81%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
RGL + VVEADLVEAL++FG I YV++MP KRQALVEFE++ A V +AAD +YIAG
Sbjct: 107 RGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAG 166
Query: 695 QQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVI 874
AF NYSTS++I+RPG++DD N VLL +I NP+Y IT DVLYT+CNP G VQRIVI
Sbjct: 167 HPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVI 226
Query: 875 FKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKM 991
F++NG+QAMVEF+SV AQ+AKA+LNGADIY+GCCTLK+
Sbjct: 227 FRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKI 265
Score = 29.6 bits (65), Expect(2) = 1e-58
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 985 KNEYARPTRLNVIRND 1032
K EYA+PTRLNV +ND
Sbjct: 264 KIEYAKPTRLNVFKND 279
>ref|XP_533677.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein L
isoform a isoform 1 [Canis familiaris].
Length = 588
Score = 216 bits (551), Expect(2) = 1e-58
Identities = 105/159 (66%), Positives = 130/159 (81%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
RGL + VVEADLVEAL++FG I YV++MP KRQALVEFE++ A V +AAD +YIAG
Sbjct: 106 RGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAG 165
Query: 695 QQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVI 874
AF NYSTS++I+RPG++DD N VLL +I NP+Y IT DVLYT+CNP G VQRIVI
Sbjct: 166 HPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVI 225
Query: 875 FKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKM 991
F++NG+QAMVEF+SV AQ+AKA+LNGADIY+GCCTLK+
Sbjct: 226 FRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKI 264
Score = 29.6 bits (65), Expect(2) = 1e-58
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 985 KNEYARPTRLNVIRND 1032
K EYA+PTRLNV +ND
Sbjct: 263 KIEYAKPTRLNVFKND 278
>ref|XP_867259.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein L
isoform a isoform 3 [Canis familiaris].
Length = 588
Score = 216 bits (551), Expect(2) = 1e-58
Identities = 105/159 (66%), Positives = 130/159 (81%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
RGL + VVEADLVEAL++FG I YV++MP KRQALVEFE++ A V +AAD +YIAG
Sbjct: 106 RGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAG 165
Query: 695 QQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVI 874
AF NYSTS++I+RPG++DD N VLL +I NP+Y IT DVLYT+CNP G VQRIVI
Sbjct: 166 HPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVI 225
Query: 875 FKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKM 991
F++NG+QAMVEF+SV AQ+AKA+LNGADIY+GCCTLK+
Sbjct: 226 FRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKI 264
Score = 29.6 bits (65), Expect(2) = 1e-58
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 985 KNEYARPTRLNVIRND 1032
K EYA+PTRLNV +ND
Sbjct: 263 KIEYAKPTRLNVFKND 278
>ref|XP_867272.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein L
isoform a isoform 4 [Canis familiaris].
Length = 552
Score = 216 bits (551), Expect(2) = 1e-58
Identities = 105/159 (66%), Positives = 130/159 (81%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
RGL + VVEADLVEAL++FG I YV++MP KRQALVEFE++ A V +AAD +YIAG
Sbjct: 106 RGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAG 165
Query: 695 QQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVI 874
AF NYSTS++I+RPG++DD N VLL +I NP+Y IT DVLYT+CNP G VQRIVI
Sbjct: 166 HPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVI 225
Query: 875 FKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKM 991
F++NG+QAMVEF+SV AQ+AKA+LNGADIY+GCCTLK+
Sbjct: 226 FRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKI 264
Score = 29.6 bits (65), Expect(2) = 1e-58
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 985 KNEYARPTRLNVIRND 1032
K EYA+PTRLNV +ND
Sbjct: 263 KIEYAKPTRLNVFKND 278
>ref|XP_868641.1| PREDICTED: similar to Polypyrimidine tract-binding protein 1 (PTB)
(Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
(57 kDa RNA-binding protein PPTB-1) isoform 8 [Canis
familiaris].
Length = 531
Score = 75.9 bits (185), Expect = 6e-14
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 33/193 (17%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
R L V E +++ FG + ++M+ K QA +E ++A V + + G
Sbjct: 64 RKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 123
Query: 695 QQAFFNYSTSKRITRPGNTDDP--------------------------------SGGNKV 778
Q + +S K + + + +G + V
Sbjct: 124 QPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPV 183
Query: 779 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAALNG 955
L + ++N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ AK +L+G
Sbjct: 184 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDG 243
Query: 956 ADIYAGCCTLKMN 994
+IY CCTL+++
Sbjct: 244 QNIYNACCTLRID 256
>ref|XP_868639.1| PREDICTED: similar to polypyrimidine tract-binding protein 1
isoform a isoform 7 [Canis familiaris].
Length = 563
Score = 75.9 bits (185), Expect = 6e-14
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 33/193 (17%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
R L V E +++ FG + ++M+ K QA +E ++A V + + G
Sbjct: 64 RKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 123
Query: 695 QQAFFNYSTSKRITRPGNTDDP--------------------------------SGGNKV 778
Q + +S K + + + +G + V
Sbjct: 124 QPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPV 183
Query: 779 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAALNG 955
L + ++N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ AK +L+G
Sbjct: 184 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDG 243
Query: 956 ADIYAGCCTLKMN 994
+IY CCTL+++
Sbjct: 244 QNIYNACCTLRID 256
>ref|XP_868637.1| PREDICTED: similar to polypyrimidine tract-binding protein 1
isoform b isoform 6 [Canis familiaris].
Length = 550
Score = 75.9 bits (185), Expect = 6e-14
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 33/193 (17%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
R L V E +++ FG + ++M+ K QA +E ++A V + + G
Sbjct: 64 RKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 123
Query: 695 QQAFFNYSTSKRITRPGNTDDP--------------------------------SGGNKV 778
Q + +S K + + + +G + V
Sbjct: 124 QPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPV 183
Query: 779 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAALNG 955
L + ++N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ AK +L+G
Sbjct: 184 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDG 243
Query: 956 ADIYAGCCTLKMN 994
+IY CCTL+++
Sbjct: 244 QNIYNACCTLRID 256
>ref|XP_868634.1| PREDICTED: similar to polypyrimidine tract-binding protein 1
isoform a isoform 5 [Canis familiaris].
Length = 539
Score = 75.9 bits (185), Expect = 6e-14
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 33/193 (17%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
R L V E +++ FG + ++M+ K QA +E ++A V + + G
Sbjct: 64 RKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 123
Query: 695 QQAFFNYSTSKRITRPGNTDDP--------------------------------SGGNKV 778
Q + +S K + + + +G + V
Sbjct: 124 QPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPV 183
Query: 779 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAALNG 955
L + ++N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ AK +L+G
Sbjct: 184 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDG 243
Query: 956 ADIYAGCCTLKMN 994
+IY CCTL+++
Sbjct: 244 QNIYNACCTLRID 256
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,478,781
Number of extensions: 723642
Number of successful extensions: 2357
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 2338
Number of HSP's successfully gapped: 22
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009715
(1037 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361415.1| PREDICTED: heterogeneous nuclear ribonucleop... 378 e-109
Alignment gi|XP_003355934.1| PREDICTED: heterogeneous nuclear ribonucleop... 206 7e-56
Alignment gi|NP_999396.1| polypyrimidine tract-binding protein 1 [Sus scr... 77 2e-14
Alignment gi|NP_001070683.1| regulator of differentiation 1 [Sus scrofa]. 74 1e-13
Alignment gi|XP_003125947.2| PREDICTED: polypyrimidine tract-binding prot... 64 2e-10
>ref|XP_003361415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Sus scrofa].
Length = 552
Score = 378 bits (971), Expect(2) = e-109
Identities = 198/242 (81%), Positives = 200/242 (82%), Gaps = 12/242 (4%)
Frame = +2
Query: 302 RETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREAT------------PXXXXXXXXX 445
RETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREAT
Sbjct: 9 RETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATCSRFKNELIIVNDHDVLRCKEK 68
Query: 446 XXXXQPEAGGXXXXXXXXXXXXXRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVE 625
EAGG RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVE
Sbjct: 69 RVYSSGEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVE 128
Query: 626 FENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPL 805
FENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPL
Sbjct: 129 FENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPL 188
Query: 806 YPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTL 985
YPITVDVLYTVCNPVGKVQRIVIFKRNGIQAM+ FESVLCAQKAKAALNGADIYAGCCTL
Sbjct: 189 YPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMLMFESVLCAQKAKAALNGADIYAGCCTL 248
Query: 986 KM 991
K+
Sbjct: 249 KI 250
Score = 35.8 bits (81), Expect(2) = e-109
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +1
Query: 985 KNEYARPTRLNVIRNDN 1035
K EYARPTRLNVIRNDN
Sbjct: 249 KIEYARPTRLNVIRNDN 265
>ref|XP_003355934.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like, partial
[Sus scrofa].
Length = 345
Score = 206 bits (524), Expect(2) = 7e-56
Identities = 104/164 (63%), Positives = 128/164 (78%), Gaps = 5/164 (3%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTIC-----YVMMMPFKRQALVEFENIDSAKECVTFAADEP 679
RGL + VVEADLVEAL+ IC YV++MP KRQALVEFE++ A V +AAD
Sbjct: 105 RGLIDGVVEADLVEALQGRIVICVFFASYVVVMPKKRQALVEFEDVLGACNAVNYAADNQ 164
Query: 680 VYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKV 859
+YIAG AF NYSTS++I+RPG++DD N VLL +I NP+Y IT DVLYT+CNP G V
Sbjct: 165 IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPV 224
Query: 860 QRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKM 991
QRIVIF++NG+QAMVEF+SV AQ+AKA+LNGADIY+GCCTLK+
Sbjct: 225 QRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKI 268
Score = 29.6 bits (65), Expect(2) = 7e-56
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 985 KNEYARPTRLNVIRND 1032
K EYA+PTRLNV +ND
Sbjct: 267 KIEYAKPTRLNVFKND 282
>ref|NP_999396.1| polypyrimidine tract-binding protein 1 [Sus scrofa].
Length = 557
Score = 76.6 bits (187), Expect = 2e-14
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 33/193 (17%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
R L V E +++ FG + ++M+ K QA +E ++A V + + G
Sbjct: 64 RKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 123
Query: 695 QQAFFNYSTSKRITRPGNTDDP--------------------------------SGGNKV 778
Q + +S K + + + +G + V
Sbjct: 124 QPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPV 183
Query: 779 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAALNG 955
L + ++N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ AK +L+G
Sbjct: 184 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDG 243
Query: 956 ADIYAGCCTLKMN 994
+IY CCTL+++
Sbjct: 244 QNIYNACCTLRID 256
>ref|NP_001070683.1| regulator of differentiation 1 [Sus scrofa].
Length = 523
Score = 74.3 bits (181), Expect = 1e-13
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
R + V EA+++ FG + ++M+ K QA +E + ++A V + ++
Sbjct: 33 RKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPVTPHLRS 92
Query: 695 QQAFFNYSTSKRI--------------------TRPGNTDDPS----------GGNKVLL 784
Q F YS + + + G+ P G + VL
Sbjct: 93 QPVFIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLGLPGAPTNEGTILPGQSPVLR 152
Query: 785 LSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAALNGAD 961
+ I+N YP+T++VL+ + + G V +I+ F K N QA++++ L A AK AL+G +
Sbjct: 153 IIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAHYAKMALDGQN 212
Query: 962 IYAGCCTLKMN 994
IY CCTL+++
Sbjct: 213 IYNACCTLRID 223
>ref|XP_003125947.2| PREDICTED: polypyrimidine tract-binding protein 2-like [Sus
scrofa].
Length = 445
Score = 63.5 bits (153), Expect = 2e-10
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Frame = +2
Query: 776 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAALN 952
VL + I N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ+AK AL+
Sbjct: 88 VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALD 147
Query: 953 GADIYAGCCTLKMN 994
G +IY CCTL+++
Sbjct: 148 GQNIYNACCTLRID 161
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,106,253
Number of extensions: 500506
Number of successful extensions: 1533
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1525
Number of HSP's successfully gapped: 7
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009715
(1037 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_659051.3| heterogeneous nuclear ribonucleoprotein L-like ... 342 2e-98
Alignment gi|NP_796275.3| heterogeneous nuclear ribonucleoprotein L [Mus ... 216 8e-59
Alignment gi|NP_001070831.1| polypyrimidine tract-binding protein 1 isofo... 77 3e-14
Alignment gi|NP_032982.2| polypyrimidine tract-binding protein 1 isoform ... 77 3e-14
Alignment gi|NP_062423.1| polypyrimidine tract-binding protein 2 [Mus mus... 75 8e-14
Alignment gi|NP_659153.2| regulator of differentiation 1 isoform 1 [Mus m... 75 8e-14
Alignment gi|NP_835458.1| regulator of differentiation 1 isoform 2 [Mus m... 75 8e-14
>ref|NP_659051.3| heterogeneous nuclear ribonucleoprotein L-like [Mus musculus].
Length = 591
Score = 342 bits (878), Expect(2) = 2e-98
Identities = 190/277 (68%), Positives = 192/277 (69%), Gaps = 48/277 (17%)
Frame = +2
Query: 305 ETYEEDREYESQAKRLKTEEGEIDYSA--------------------------------- 385
ETYEEDRE+ESQAKRLKTEEGEI YSA
Sbjct: 12 ETYEEDREFESQAKRLKTEEGEIVYSAEESENRQEATPQAGSDSDSGGGDGGDGDGGSGG 71
Query: 386 ----EEGENRREATPXXXXXXXXXXXXX-----------QPEAGGXXXXXXXXXXXXXRG 520
EEGE E E GG RG
Sbjct: 72 GGDGEEGEGGEEGDEGDGDEGGSGGDEGGSGGGPRSMPLSTEGGGSHHKVSVSPVVHVRG 131
Query: 521 LCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQ 700
LCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAAD PVYIAGQQ
Sbjct: 132 LCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQ 191
Query: 701 AFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK 880
AFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK
Sbjct: 192 AFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK 251
Query: 881 RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKM 991
RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK+
Sbjct: 252 RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 288
Score = 35.8 bits (81), Expect(2) = 2e-98
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +1
Query: 985 KNEYARPTRLNVIRNDN 1035
K EYARPTRLNVIRNDN
Sbjct: 287 KIEYARPTRLNVIRNDN 303
>ref|NP_796275.3| heterogeneous nuclear ribonucleoprotein L [Mus musculus].
Length = 586
Score = 216 bits (551), Expect(2) = 8e-59
Identities = 105/159 (66%), Positives = 130/159 (81%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
RGL + VVEADLVEAL++FG I YV++MP KRQALVEFE++ A V +AAD +YIAG
Sbjct: 104 RGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAG 163
Query: 695 QQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVI 874
AF NYSTS++I+RPG++DD N VLL +I NP+Y IT DVLYT+CNP G VQRIVI
Sbjct: 164 HPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVI 223
Query: 875 FKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKM 991
F++NG+QAMVEF+SV AQ+AKA+LNGADIY+GCCTLK+
Sbjct: 224 FRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKI 262
Score = 29.6 bits (65), Expect(2) = 8e-59
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 985 KNEYARPTRLNVIRND 1032
K EYA+PTRLNV +ND
Sbjct: 261 KIEYAKPTRLNVFKND 276
>ref|NP_001070831.1| polypyrimidine tract-binding protein 1 isoform 1 [Mus musculus].
Length = 555
Score = 76.6 bits (187), Expect = 3e-14
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 33/193 (17%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
R L V E +++ FG + ++M+ K QA +E ++A V + + G
Sbjct: 63 RKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRG 122
Query: 695 QQAFFNYSTSKRITRPGNTDDP--------------------------------SGGNKV 778
Q + +S K + + + +G + V
Sbjct: 123 QPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPV 182
Query: 779 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAALNG 955
L + ++N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ AK +L+G
Sbjct: 183 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDG 242
Query: 956 ADIYAGCCTLKMN 994
+IY CCTL+++
Sbjct: 243 QNIYNACCTLRID 255
>ref|NP_032982.2| polypyrimidine tract-binding protein 1 isoform 2 [Mus musculus].
Length = 529
Score = 76.6 bits (187), Expect = 3e-14
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 33/193 (17%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
R L V E +++ FG + ++M+ K QA +E ++A V + + G
Sbjct: 63 RKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRG 122
Query: 695 QQAFFNYSTSKRITRPGNTDDP--------------------------------SGGNKV 778
Q + +S K + + + +G + V
Sbjct: 123 QPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPV 182
Query: 779 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAALNG 955
L + ++N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ AK +L+G
Sbjct: 183 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDG 242
Query: 956 ADIYAGCCTLKMN 994
+IY CCTL+++
Sbjct: 243 QNIYNACCTLRID 255
>ref|NP_062423.1| polypyrimidine tract-binding protein 2 [Mus musculus].
Length = 532
Score = 75.1 bits (183), Expect = 8e-14
Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 30/190 (15%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
R L V E +++ FG + ++M+ K QA +E ++A V + + ++
Sbjct: 64 RKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRN 123
Query: 695 QQAFFNYSTSKR-----------------ITRPGNTDDPSGG------------NKVLLL 787
Q + YS K +T + P G + VL +
Sbjct: 124 QPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRI 183
Query: 788 SIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAALNGADI 964
I N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ+AK AL+G +I
Sbjct: 184 IIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNI 243
Query: 965 YAGCCTLKMN 994
Y CCTL+++
Sbjct: 244 YNACCTLRID 253
>ref|NP_659153.2| regulator of differentiation 1 isoform 1 [Mus musculus].
Length = 551
Score = 75.1 bits (183), Expect = 8e-14
Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 31/185 (16%)
Frame = +2
Query: 533 VVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFN 712
V EA+++ FG + ++M+ K QA +E + ++A + + ++ Q +
Sbjct: 69 VTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYTPVTPHLRSQPVYIQ 128
Query: 713 YSTSKRI--------------------TRPGNTDDPS----------GGNKVLLLSIQNP 802
YS + + + GN P G + VL + I+N
Sbjct: 129 YSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATANEGTLLPGQSPVLRIIIENL 188
Query: 803 LYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAALNGADIYAGCC 979
YP+T++VL+ + + G V +I+ F K N QA++++ + AQ AK AL+G +IY CC
Sbjct: 189 FYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNIYNACC 248
Query: 980 TLKMN 994
TL+++
Sbjct: 249 TLRID 253
>ref|NP_835458.1| regulator of differentiation 1 isoform 2 [Mus musculus].
Length = 523
Score = 75.1 bits (183), Expect = 8e-14
Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 31/185 (16%)
Frame = +2
Query: 533 VVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFN 712
V EA+++ FG + ++M+ K QA +E + ++A + + ++ Q +
Sbjct: 41 VTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYTPVTPHLRSQPVYIQ 100
Query: 713 YSTSKRI--------------------TRPGNTDDPS----------GGNKVLLLSIQNP 802
YS + + + GN P G + VL + I+N
Sbjct: 101 YSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATANEGTLLPGQSPVLRIIIENL 160
Query: 803 LYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAALNGADIYAGCC 979
YP+T++VL+ + + G V +I+ F K N QA++++ + AQ AK AL+G +IY CC
Sbjct: 161 FYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNIYNACC 220
Query: 980 TLKMN 994
TL+++
Sbjct: 221 TLRID 225
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,455,591
Number of extensions: 604213
Number of successful extensions: 1882
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1872
Number of HSP's successfully gapped: 10
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009715
(1037 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_612403.2| heterogeneous nuclear ribonucleoprotein L-like ... 395 e-114
Alignment gi|NP_001136122.1| heterogeneous nuclear ribonucleoprotein L-li... 395 e-114
Alignment gi|NP_001524.2| heterogeneous nuclear ribonucleoprotein L isofo... 216 9e-59
Alignment gi|NP_001005335.1| heterogeneous nuclear ribonucleoprotein L is... 182 2e-48
Alignment gi|NP_114368.1| polypyrimidine tract-binding protein 1 isoform ... 75 8e-14
Alignment gi|NP_114367.1| polypyrimidine tract-binding protein 1 isoform ... 75 8e-14
Alignment gi|NP_002810.1| polypyrimidine tract-binding protein 1 isoform ... 75 8e-14
Alignment gi|NP_067013.1| polypyrimidine tract-binding protein 2 [Homo sa... 75 1e-13
Alignment gi|NP_001157262.1| regulator of differentiation 1 isoform 3 [Ho... 70 2e-12
Alignment gi|NP_001157260.1| regulator of differentiation 1 isoform 2 [Ho... 70 2e-12
>ref|NP_612403.2| heterogeneous nuclear ribonucleoprotein L-like isoform 1 [Homo
sapiens].
Length = 542
Score = 395 bits (1014), Expect(2) = e-114
Identities = 203/231 (87%), Positives = 204/231 (88%), Gaps = 1/231 (0%)
Frame = +2
Query: 302 RETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPXXXXXXXXXXXXX-QPEAGGX 478
RETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATP QPEAGG
Sbjct: 9 RETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGS 68
Query: 479 XXXXXXXXXXXXRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECV 658
RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECV
Sbjct: 69 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECV 128
Query: 659 TFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTV 838
TFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTV
Sbjct: 129 TFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTV 188
Query: 839 CNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKM 991
CNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK+
Sbjct: 189 CNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 239
Score = 35.8 bits (81), Expect(2) = e-114
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +1
Query: 985 KNEYARPTRLNVIRNDN 1035
K EYARPTRLNVIRNDN
Sbjct: 238 KIEYARPTRLNVIRNDN 254
>ref|NP_001136122.1| heterogeneous nuclear ribonucleoprotein L-like isoform 2 [Homo
sapiens].
Length = 537
Score = 395 bits (1014), Expect(2) = e-114
Identities = 203/231 (87%), Positives = 204/231 (88%), Gaps = 1/231 (0%)
Frame = +2
Query: 302 RETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPXXXXXXXXXXXXX-QPEAGGX 478
RETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATP QPEAGG
Sbjct: 4 RETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGS 63
Query: 479 XXXXXXXXXXXXRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECV 658
RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECV
Sbjct: 64 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECV 123
Query: 659 TFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTV 838
TFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTV
Sbjct: 124 TFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTV 183
Query: 839 CNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKM 991
CNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK+
Sbjct: 184 CNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 234
Score = 35.8 bits (81), Expect(2) = e-114
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +1
Query: 985 KNEYARPTRLNVIRNDN 1035
K EYARPTRLNVIRNDN
Sbjct: 233 KIEYARPTRLNVIRNDN 249
>ref|NP_001524.2| heterogeneous nuclear ribonucleoprotein L isoform a [Homo sapiens].
Length = 589
Score = 216 bits (551), Expect(2) = 9e-59
Identities = 105/159 (66%), Positives = 130/159 (81%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
RGL + VVEADLVEAL++FG I YV++MP KRQALVEFE++ A V +AAD +YIAG
Sbjct: 107 RGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAG 166
Query: 695 QQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVI 874
AF NYSTS++I+RPG++DD N VLL +I NP+Y IT DVLYT+CNP G VQRIVI
Sbjct: 167 HPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVI 226
Query: 875 FKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKM 991
F++NG+QAMVEF+SV AQ+AKA+LNGADIY+GCCTLK+
Sbjct: 227 FRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKI 265
Score = 29.6 bits (65), Expect(2) = 9e-59
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 985 KNEYARPTRLNVIRND 1032
K EYA+PTRLNV +ND
Sbjct: 264 KIEYAKPTRLNVFKND 279
>ref|NP_001005335.1| heterogeneous nuclear ribonucleoprotein L isoform b [Homo sapiens].
Length = 456
Score = 182 bits (461), Expect(2) = 2e-48
Identities = 87/132 (65%), Positives = 107/132 (81%)
Frame = +2
Query: 596 MPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNK 775
MP KRQALVEFE++ A V +AAD +YIAG AF NYSTS++I+RPG++DD N
Sbjct: 1 MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNS 60
Query: 776 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNG 955
VLL +I NP+Y IT DVLYT+CNP G VQRIVIF++NG+QAMVEF+SV AQ+AKA+LNG
Sbjct: 61 VLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNG 120
Query: 956 ADIYAGCCTLKM 991
ADIY+GCCTLK+
Sbjct: 121 ADIYSGCCTLKI 132
Score = 29.6 bits (65), Expect(2) = 2e-48
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 985 KNEYARPTRLNVIRND 1032
K EYA+PTRLNV +ND
Sbjct: 131 KIEYAKPTRLNVFKND 146
>ref|NP_114368.1| polypyrimidine tract-binding protein 1 isoform c [Homo sapiens].
Length = 531
Score = 75.5 bits (184), Expect = 8e-14
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 33/193 (17%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
R L V E +++ FG + ++M+ K QA +E ++A V + + G
Sbjct: 64 RKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 123
Query: 695 QQAFFNYSTSKRITRPGNTDDP--------------------------------SGGNKV 778
Q + +S K + + + +G + V
Sbjct: 124 QPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPV 183
Query: 779 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAALNG 955
L + ++N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ AK +L+G
Sbjct: 184 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDG 243
Query: 956 ADIYAGCCTLKMN 994
+IY CCTL+++
Sbjct: 244 QNIYNACCTLRID 256
>ref|NP_114367.1| polypyrimidine tract-binding protein 1 isoform b [Homo sapiens].
Length = 550
Score = 75.5 bits (184), Expect = 8e-14
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 33/193 (17%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
R L V E +++ FG + ++M+ K QA +E ++A V + + G
Sbjct: 64 RKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 123
Query: 695 QQAFFNYSTSKRITRPGNTDDP--------------------------------SGGNKV 778
Q + +S K + + + +G + V
Sbjct: 124 QPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPV 183
Query: 779 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAALNG 955
L + ++N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ AK +L+G
Sbjct: 184 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDG 243
Query: 956 ADIYAGCCTLKMN 994
+IY CCTL+++
Sbjct: 244 QNIYNACCTLRID 256
>ref|NP_002810.1| polypyrimidine tract-binding protein 1 isoform a [Homo sapiens].
Length = 557
Score = 75.5 bits (184), Expect = 8e-14
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 33/193 (17%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
R L V E +++ FG + ++M+ K QA +E ++A V + + G
Sbjct: 64 RKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 123
Query: 695 QQAFFNYSTSKRITRPGNTDDP--------------------------------SGGNKV 778
Q + +S K + + + +G + V
Sbjct: 124 QPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPV 183
Query: 779 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAALNG 955
L + ++N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ AK +L+G
Sbjct: 184 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDG 243
Query: 956 ADIYAGCCTLKMN 994
+IY CCTL+++
Sbjct: 244 QNIYNACCTLRID 256
>ref|NP_067013.1| polypyrimidine tract-binding protein 2 [Homo sapiens].
Length = 531
Score = 75.1 bits (183), Expect = 1e-13
Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 30/190 (15%)
Frame = +2
Query: 515 RGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAG 694
R L V E +++ FG + ++M+ K QA +E ++A V + + ++
Sbjct: 64 RKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRN 123
Query: 695 QQAFFNYSTSKR-----------------ITRPGNTDDPSGG------------NKVLLL 787
Q + YS K +T + P G + VL +
Sbjct: 124 QPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRI 183
Query: 788 SIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAALNGADI 964
I N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ+AK AL+G +I
Sbjct: 184 IIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNI 243
Query: 965 YAGCCTLKMN 994
Y CCTL+++
Sbjct: 244 YNACCTLRID 253
>ref|NP_001157262.1| regulator of differentiation 1 isoform 3 [Homo sapiens].
Length = 555
Score = 70.5 bits (171), Expect = 2e-12
Identities = 48/185 (25%), Positives = 89/185 (48%), Gaps = 31/185 (16%)
Frame = +2
Query: 533 VVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFN 712
V EA+++ FG + ++M+ K QA +E + ++A V + ++ Q +
Sbjct: 73 VTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQ 132
Query: 713 YSTSKRI--------------------TRPGN---TDDPS-------GGNKVLLLSIQNP 802
YS + + + G+ + PS G + VL + I+N
Sbjct: 133 YSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENL 192
Query: 803 LYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAALNGADIYAGCC 979
YP+T++VL+ + + G V +I+ F K N QA++++ + A AK AL+G +IY CC
Sbjct: 193 FYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACC 252
Query: 980 TLKMN 994
TL+++
Sbjct: 253 TLRID 257
>ref|NP_001157260.1| regulator of differentiation 1 isoform 2 [Homo sapiens].
Length = 524
Score = 70.5 bits (171), Expect = 2e-12
Identities = 48/185 (25%), Positives = 89/185 (48%), Gaps = 31/185 (16%)
Frame = +2
Query: 533 VVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFN 712
V EA+++ FG + ++M+ K QA +E + ++A V + ++ Q +
Sbjct: 42 VTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQ 101
Query: 713 YSTSKRI--------------------TRPGN---TDDPS-------GGNKVLLLSIQNP 802
YS + + + G+ + PS G + VL + I+N
Sbjct: 102 YSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENL 161
Query: 803 LYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAALNGADIYAGCC 979
YP+T++VL+ + + G V +I+ F K N QA++++ + A AK AL+G +IY CC
Sbjct: 162 FYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACC 221
Query: 980 TLKMN 994
TL+++
Sbjct: 222 TLRID 226
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 29,900,708
Number of extensions: 716281
Number of successful extensions: 2301
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2288
Number of HSP's successfully gapped: 15
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009715
(1037 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894261.2| Sus scrofa unplaced genomic scaffold ChrUScaf2145 476 e-131
>gb|GL894261.2| Sus scrofa unplaced genomic scaffold ChrUScaf2145
Length = 124711
Score = 476 bits (240), Expect = e-131
Identities = 240/240 (100%)
Strand = Plus / Minus
Query: 582 gctatgtgatgatgatgccatttaaacggcaggctctagtggaatttgagaacatagata 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86069 gctatgtgatgatgatgccatttaaacggcaggctctagtggaatttgagaacatagata 86010
Query: 642 gtgccaaagaatgtgtgacgtttgctgcagatgaacccgtgtacatagctggtcagcagg 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86009 gtgccaaagaatgtgtgacgtttgctgcagatgaacccgtgtacatagctggtcagcagg 85950
Query: 702 cttttttcaactactctacaagcaaaaggatcactcggccaggaaatactgatgatccat 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85949 cttttttcaactactctacaagcaaaaggatcactcggccaggaaatactgatgatccat 85890
Query: 762 caggaggcaacaaagttcttctgctctcaattcagaatcctctttatccaattacagtgg 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85889 caggaggcaacaaagttcttctgctctcaattcagaatcctctttatccaattacagtgg 85830
Score = 283 bits (143), Expect = 9e-74
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 278 atgtcctcctcctcatcctcccctagggagacgtatgaggaggaccgggaatacgagagc 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101878 atgtcctcctcctcatcctcccctagggagacgtatgaggaggaccgggaatacgagagc 101819
Query: 338 caggccaagcgcctcaagaccgaggagggagaaatcgactactctgcggaggaaggcgag 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101818 caggccaagcgcctcaagaccgaggagggagaaatcgactactctgcggaggaaggcgag 101759
Query: 398 aatcgccgggaagcgacgccccg 420
|||||||||||||||||||||||
Sbjct: 101758 aatcgccgggaagcgacgccccg 101736
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 463 ggaggcaggtggaagtcatcataaagtttctgtttcacctgttgtccatgttcgaggact 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91045 ggaggcaggtggaagtcatcataaagtttctgtttcacctgttgtccatgttcgaggact 90986
Query: 523 ctgtgaatctgtggtggaagcagacctcgtggaggctctggaaaaatttgggacaatatg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90985 ctgtgaatctgtggtggaagcagacctcgtggaggctctggaaaaatttgggacaatatg 90926
Score = 176 bits (89), Expect = 2e-41
Identities = 96/97 (98%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 907 gtttgaatcagtcctttgtgcccagaaagctaaagcagcactcaatggagcagatatata 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81555 gtttgaatcagtcctttgtgcccagaaagctaaagcagcactcaatggagcagatatata 81496
Query: 967 tgcgggatgttgcaccctaaaaa-tgaatatgcaagg 1002
||||||||||||||||||||||| |||||||||||||
Sbjct: 81495 tgcgggatgttgcaccctaaaaattgaatatgcaagg 81459
Score = 172 bits (87), Expect = 2e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 820 ggatgttttatatactgtatgcaatcctgttggaaaagtgcaacgtattgttatatttaa 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83777 ggatgttttatatactgtatgcaatcctgttggaaaagtgcaacgtattgttatatttaa 83718
Query: 880 gagaaatgggatacaagcaatggttga 906
|||||||||||||||||||||||||||
Sbjct: 83717 gagaaatgggatacaagcaatggttga 83691
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Minus
Query: 164 acagaccttttctgaagaagcgctgcgggtggcgaggactggcc 207
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102037 acagaccttttctgaagaagcgctgcgggtggcgaggactggcc 101994
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Minus
Query: 1 ggcaggctttggagacggaggaagagggagaggctgaatgttgg 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102200 ggcaggctttggagacggaggaagagggagaggctgaatgttgg 102157
Score = 71.9 bits (36), Expect = 7e-10
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 1002 gccaactcgtctaaatgttattaggaatgacaatga 1037
||||||||||||||||||||||||||||||||||||
Sbjct: 81373 gccaactcgtctaaatgttattaggaatgacaatga 81338
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,293,422
Number of extensions: 203
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 8
Length of query: 1037
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1016
Effective length of database: 2,808,413,156
Effective search space: 2853347766496
Effective search space used: 2853347766496
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)