Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009721
(1363 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095634.1| required for meiotic nuclear division protei... 582 e-171
>ref|NP_001095634.1| required for meiotic nuclear division protein 1 homolog [Bos taurus].
Length = 451
Score = 582 bits (1501), Expect(2) = e-171
Identities = 295/356 (82%), Positives = 318/356 (89%), Gaps = 8/356 (2%)
Frame = +1
Query: 244 MPAGLLRALAGSHCILSKTCQCQRLVHRTLKPLKELETTC-SSLTESQSLDMFFPDTAAG 420
M A LLRALAGS ILSK CQCQRL+H+ LKPLKE ET ++LT +Q+LD+FFPD A G
Sbjct: 1 MSARLLRALAGSRHILSKACQCQRLIHQMLKPLKEFETAARTALTRNQNLDLFFPDAATG 60
Query: 421 GLNKSRILEMNQKIASTSVLSPLNAA-------HFPTGSLFGTHQKVTHRPNLLGSKRFV 579
GLNKS+IL MNQKI++T+VL P N A H PT + TH+KVTH+PNLLGSK F+
Sbjct: 61 GLNKSQILWMNQKISNTNVLPPFNTACCQDGKAHLPTRNSVSTHRKVTHKPNLLGSKWFI 120
Query: 580 KILGRHSSSVSTETFPKQDFPKIKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATADE 759
KIL RHSSSVSTET KQDFP+IKRPLKASRTRQPSRTNLPVL VNEDLM CTAFATADE
Sbjct: 121 KILKRHSSSVSTETVSKQDFPQIKRPLKASRTRQPSRTNLPVLPVNEDLMQCTAFATADE 180
Query: 760 YHLGNLSQDLAAHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKD 939
YHLG+LSQDL +HGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKD
Sbjct: 181 YHLGSLSQDLTSHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKD 240
Query: 940 KTMKHVMQVLEKHEIQPYEVALVHWENEELNYIKTEGQSKLHRGEIRLNSELDIDDAILE 1119
+TMKHVMQVLEKHEIQPYE+ALVHWENEELNY KTEGQSKLHRGEIRLNSELD+DD ILE
Sbjct: 241 QTMKHVMQVLEKHEIQPYEIALVHWENEELNYTKTEGQSKLHRGEIRLNSELDLDDVILE 300
Query: 1120 KFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKEVKLSHEEVMQKMGELF 1287
KFAFSNALCLSVKLAIWEASLDKF+ESIQSIPEALKAGK+VKLSHEEVMQKMGELF
Sbjct: 301 KFAFSNALCLSVKLAIWEASLDKFVESIQSIPEALKAGKKVKLSHEEVMQKMGELF 356
Score = 38.1 bits (87), Expect(2) = e-171
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 1284 LLPLRHRINLSSDFLISPDF 1343
L LRHRINLSSDFLI+PDF
Sbjct: 355 LFALRHRINLSSDFLITPDF 374
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,291,119
Number of extensions: 1555928
Number of successful extensions: 6999
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6891
Number of HSP's successfully gapped: 2
Length of query: 454
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 348
Effective length of database: 14,174,046
Effective search space: 4932568008
Effective search space used: 4932568008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009721
(1363 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533452.2| PREDICTED: similar to CG11679-PA [Canis familia... 612 e-179
>ref|XP_533452.2| PREDICTED: similar to CG11679-PA [Canis familiaris].
Length = 599
Score = 612 bits (1577), Expect(2) = e-179
Identities = 316/398 (79%), Positives = 341/398 (85%), Gaps = 9/398 (2%)
Frame = +1
Query: 121 GEVSATALFWELARSRHNAPRLCFPPT*TSSVTGFTAWDVVMPAGLLRALAGSHCILSKT 300
G A AL A +R A FPP + AWDVVM + L RALAGSHCILSK
Sbjct: 111 GGAGAVALLLAAAGARKLAR---FPPRHVPLLFRRRAWDVVMSSRLFRALAGSHCILSKV 167
Query: 301 CQCQRLVHRTLKPLKELETT-CSSLTESQSLDMFFPDTAAGGLNKSRILEMNQKIASTSV 477
CQCQRLV +TLKPLKE +TT C++ T Q+LD+FFPDTAAGGLNKS++LE NQKI++TS+
Sbjct: 168 CQCQRLVQQTLKPLKEFKTTTCNTTTRGQNLDLFFPDTAAGGLNKSQVLERNQKISNTSI 227
Query: 478 LSPLNAAH-------FPTGSLFGTHQKVTHRPNLLGSKRFVKILGRHSSSVSTETF-PKQ 633
SPLNA H PT FGTH+KVTHRPNLLGSK F+KIL RH SS+STET PKQ
Sbjct: 228 PSPLNAVHCQEEKVHLPTRKSFGTHRKVTHRPNLLGSKWFIKILERHYSSISTETLVPKQ 287
Query: 634 DFPKIKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATADEYHLGNLSQDLAAHGYVEV 813
DFP+IKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATADEYHLG LSQDL + GYVEV
Sbjct: 288 DFPQIKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATADEYHLGTLSQDLTSRGYVEV 347
Query: 814 TSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKDKTMKHVMQVLEKHEIQPY 993
TSLPRDAANILVMGVE+SAKEGDPGTIFFFREGAAVFWNVKDKTMKHVMQVLEKHEIQPY
Sbjct: 348 TSLPRDAANILVMGVEHSAKEGDPGTIFFFREGAAVFWNVKDKTMKHVMQVLEKHEIQPY 407
Query: 994 EVALVHWENEELNYIKTEGQSKLHRGEIRLNSELDIDDAILEKFAFSNALCLSVKLAIWE 1173
E+ALVHWENEEL YIKTEGQS+LHRGEIRLNSELD+DDAILEKFAFSNALCLSVKLAIWE
Sbjct: 408 EIALVHWENEELTYIKTEGQSRLHRGEIRLNSELDLDDAILEKFAFSNALCLSVKLAIWE 467
Query: 1174 ASLDKFIESIQSIPEALKAGKEVKLSHEEVMQKMGELF 1287
ASLDKF+ESIQSIPEALKAGK+VKLSHEEVMQKMGELF
Sbjct: 468 ASLDKFVESIQSIPEALKAGKKVKLSHEEVMQKMGELF 505
Score = 38.1 bits (87), Expect(2) = e-179
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 1284 LLPLRHRINLSSDFLISPDF 1343
L LRHRINLSSDFLI+PDF
Sbjct: 504 LFALRHRINLSSDFLITPDF 523
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,698,634
Number of extensions: 1614108
Number of successful extensions: 7168
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7072
Number of HSP's successfully gapped: 2
Length of query: 454
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 348
Effective length of database: 15,340,888
Effective search space: 5338629024
Effective search space used: 5338629024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009721
(1363 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929250.1| PREDICTED: required for meiotic nuclear divi... 692 0.0
>ref|XP_001929250.1| PREDICTED: required for meiotic nuclear division protein 1 homolog
isoform 1 [Sus scrofa].
Length = 443
Score = 692 bits (1785), Expect(2) = 0.0
Identities = 347/348 (99%), Positives = 348/348 (100%)
Frame = +1
Query: 244 MPAGLLRALAGSHCILSKTCQCQRLVHRTLKPLKELETTCSSLTESQSLDMFFPDTAAGG 423
MPAGLLRALAGSHCILSKTCQCQRLVHRTLKPLKELETTCSSLTESQSLDMFFPDTAAGG
Sbjct: 1 MPAGLLRALAGSHCILSKTCQCQRLVHRTLKPLKELETTCSSLTESQSLDMFFPDTAAGG 60
Query: 424 LNKSRILEMNQKIASTSVLSPLNAAHFPTGSLFGTHQKVTHRPNLLGSKRFVKILGRHSS 603
LNKSRILEMNQKIASTSVLSPLNAAHFPTGSLFGTHQKVTHRPNLLGSKRFVKILGRHSS
Sbjct: 61 LNKSRILEMNQKIASTSVLSPLNAAHFPTGSLFGTHQKVTHRPNLLGSKRFVKILGRHSS 120
Query: 604 SVSTETFPKQDFPKIKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATADEYHLGNLSQ 783
SVSTETFPKQDFPKIKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATADEYHLGNLSQ
Sbjct: 121 SVSTETFPKQDFPKIKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATADEYHLGNLSQ 180
Query: 784 DLAAHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKDKTMKHVMQ 963
DLAAHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKDKTMKHVMQ
Sbjct: 181 DLAAHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKDKTMKHVMQ 240
Query: 964 VLEKHEIQPYEVALVHWENEELNYIKTEGQSKLHRGEIRLNSELDIDDAILEKFAFSNAL 1143
VLEKHEIQPYEVALVHWENEELNYIKTEGQSKLHRGEIRLNSELDIDDAILEKFAFSNAL
Sbjct: 241 VLEKHEIQPYEVALVHWENEELNYIKTEGQSKLHRGEIRLNSELDIDDAILEKFAFSNAL 300
Query: 1144 CLSVKLAIWEASLDKFIESIQSIPEALKAGKEVKLSHEEVMQKMGELF 1287
CLSVKLAIWEASLDKFIESIQSIPEALKAGK+VKLSHEEVMQKMGELF
Sbjct: 301 CLSVKLAIWEASLDKFIESIQSIPEALKAGKKVKLSHEEVMQKMGELF 348
Score = 38.1 bits (87), Expect(2) = 0.0
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 1284 LLPLRHRINLSSDFLISPDF 1343
L LRHRINLSSDFLI+PDF
Sbjct: 347 LFALRHRINLSSDFLITPDF 366
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,954,290
Number of extensions: 1000739
Number of successful extensions: 4520
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4424
Number of HSP's successfully gapped: 2
Length of query: 454
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 352
Effective length of database: 8,804,438
Effective search space: 3099162176
Effective search space used: 3099162176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009721
(1363 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079619.4| required for meiotic nuclear division protein 1... 511 e-149
>ref|NP_079619.4| required for meiotic nuclear division protein 1 homolog [Mus
musculus].
Length = 450
Score = 511 bits (1317), Expect(2) = e-149
Identities = 269/358 (75%), Positives = 297/358 (82%), Gaps = 10/358 (2%)
Frame = +1
Query: 244 MPAGLLRALAGSHCILSKTCQCQRLVHRTLKPLKELE-TTC-SSLTESQSLDMFFPDTAA 417
MP+ LL LA H I +K QCQRL TL+PL++ E TTC + LT Q L FFP A
Sbjct: 1 MPSRLLHTLASLHSISAKAHQCQRLTWLTLRPLRKSESTTCHNGLTIQQHLHSFFPSITA 60
Query: 418 GGLNKSRILEMNQKIASTSVLSPLNAAHF-------PTGSLFGTHQKVTHRPNLLGSKRF 576
LNK ILEM++ + TS L PLNA H+ P+ FGTH+ +TH+PNLL SK F
Sbjct: 61 DSLNKPEILEMSRITSDTSRLFPLNAVHWLDGKEHWPSMHPFGTHRSMTHKPNLLCSKWF 120
Query: 577 VKILGRHSSSVSTETF-PKQDFPKIKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATA 753
+K + RH SSVS E PKQD P+IKRPLKASRTRQPSRTNLP LSVNEDLM CTAFATA
Sbjct: 121 IKAVKRHHSSVSNEALVPKQDLPQIKRPLKASRTRQPSRTNLPDLSVNEDLMQCTAFATA 180
Query: 754 DEYHLGNLSQDLAAHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNV 933
DEYHLG+LSQ+L + GYVEVTSLPRDAANILVMGVE+SAKEGDPGTIF FREGAAVFWNV
Sbjct: 181 DEYHLGSLSQELVSCGYVEVTSLPRDAANILVMGVESSAKEGDPGTIFLFREGAAVFWNV 240
Query: 934 KDKTMKHVMQVLEKHEIQPYEVALVHWENEELNYIKTEGQSKLHRGEIRLNSELDIDDAI 1113
K+KTMKHVMQVLE+HE QPYEVALVHWENEELNYIKTEGQSKLHRGEI+LNSELD+DDAI
Sbjct: 241 KEKTMKHVMQVLERHETQPYEVALVHWENEELNYIKTEGQSKLHRGEIKLNSELDLDDAI 300
Query: 1114 LEKFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKEVKLSHEEVMQKMGELF 1287
LEKFAFSNALCLSVKLAIWEA+LDKFIESIQSIPEALKAGK+VKLSH+EVMQKMGELF
Sbjct: 301 LEKFAFSNALCLSVKLAIWEATLDKFIESIQSIPEALKAGKKVKLSHKEVMQKMGELF 358
Score = 38.1 bits (87), Expect(2) = e-149
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 1284 LLPLRHRINLSSDFLISPDF 1343
L LRHRINLSSDFLI+PDF
Sbjct: 357 LFALRHRINLSSDFLITPDF 376
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,213,577
Number of extensions: 1326193
Number of successful extensions: 5619
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5507
Number of HSP's successfully gapped: 2
Length of query: 454
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 349
Effective length of database: 12,463,779
Effective search space: 4349858871
Effective search space used: 4349858871
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009721
(1363 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060379.2| required for meiotic nuclear division protein 1... 588 e-172
>ref|NP_060379.2| required for meiotic nuclear division protein 1 homolog [Homo
sapiens].
Length = 449
Score = 588 bits (1517), Expect(2) = e-172
Identities = 302/357 (84%), Positives = 323/357 (90%), Gaps = 9/357 (2%)
Frame = +1
Query: 244 MPAGLLRALAGSHCILSKTCQCQRLVHRTLKPLKELE-TTCSSLTESQSLDMFFPDTAAG 420
MPA LLRA+A SH ILSK QC+R+ H LKPLKE E TTCS+LT QSLD+F PD A
Sbjct: 1 MPATLLRAVARSHHILSKAHQCRRIGHLMLKPLKEFENTTCSTLTIRQSLDLFLPDKTAS 60
Query: 421 GLNKSRILEMNQKIASTSVLSPLNAA-------HFPTGSLFGTHQKVTHRPNLLGSKRFV 579
GLNKS+ILEMNQK + TS+LSPLNAA H PT FGTH++VTH+PNLLGSK F+
Sbjct: 61 GLNKSQILEMNQKKSDTSMLSPLNAARCQDEKAHLPTMKSFGTHRRVTHKPNLLGSKWFI 120
Query: 580 KILGRHSSSVSTETF-PKQDFPKIKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATAD 756
KIL RH SSVSTETF PKQDFP++KRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATAD
Sbjct: 121 KILKRHFSSVSTETFVPKQDFPQVKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATAD 180
Query: 757 EYHLGNLSQDLAAHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVK 936
EYHLGNLSQDLA+HGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVK
Sbjct: 181 EYHLGNLSQDLASHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVK 240
Query: 937 DKTMKHVMQVLEKHEIQPYEVALVHWENEELNYIKTEGQSKLHRGEIRLNSELDIDDAIL 1116
DKTMKHVM+VLEKHEIQPYE+ALVHWENEELNYIK EGQSKLHRGEI+LNSELD+DDAIL
Sbjct: 241 DKTMKHVMKVLEKHEIQPYEIALVHWENEELNYIKIEGQSKLHRGEIKLNSELDLDDAIL 300
Query: 1117 EKFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKEVKLSHEEVMQKMGELF 1287
EKFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGK+VKLSHEEVMQK+GELF
Sbjct: 301 EKFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKKVKLSHEEVMQKIGELF 357
Score = 38.1 bits (87), Expect(2) = e-172
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 1284 LLPLRHRINLSSDFLISPDF 1343
L LRHRINLSSDFLI+PDF
Sbjct: 356 LFALRHRINLSSDFLITPDF 375
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,610,913
Number of extensions: 1584845
Number of successful extensions: 6971
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6801
Number of HSP's successfully gapped: 2
Length of query: 454
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 348
Effective length of database: 14,802,980
Effective search space: 5151437040
Effective search space used: 5151437040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009721
(1363 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 977 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 977 bits (493), Expect = 0.0
Identities = 493/493 (100%)
Strand = Plus / Plus
Query: 229 gcttgggatgtggtaatgccagccggacttctcagagccctggccggatctcactgcatt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17224291 gcttgggatgtggtaatgccagccggacttctcagagccctggccggatctcactgcatt 17224350
Query: 289 ttatcaaaaacgtgtcagtgccaaagacttgttcatcgaacattgaaaccacttaaggaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17224351 ttatcaaaaacgtgtcagtgccaaagacttgttcatcgaacattgaaaccacttaaggaa 17224410
Query: 349 cttgagacaacatgcagctccctcaccgaaagtcagagcttggatatgttctttcctgat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17224411 cttgagacaacatgcagctccctcaccgaaagtcagagcttggatatgttctttcctgat 17224470
Query: 409 acagcggctggtggtttgaataagtcccggatattggaaatgaaccagaaaatagccagt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17224471 acagcggctggtggtttgaataagtcccggatattggaaatgaaccagaaaatagccagt 17224530
Query: 469 acaagcgtcctctctccattaaatgctgcacactttccaaccgggagcttgtttgggact 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17224531 acaagcgtcctctctccattaaatgctgcacactttccaaccgggagcttgtttgggact 17224590
Query: 529 caccagaaagtgactcacagaccaaatctgttaggttctaagaggtttgtaaagatatta 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17224591 caccagaaagtgactcacagaccaaatctgttaggttctaagaggtttgtaaagatatta 17224650
Query: 589 gggagacattcctcttctgtatcaacggaaacatttcccaaacaagactttccaaaaatc 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17224651 gggagacattcctcttctgtatcaacggaaacatttcccaaacaagactttccaaaaatc 17224710
Query: 649 aagagaccactgaaagcatcgaggaccaggcagccgtccaggaccaaccttccagttctg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17224711 aagagaccactgaaagcatcgaggaccaggcagccgtccaggaccaaccttccagttctg 17224770
Query: 709 tctgtgaacgagg 721
|||||||||||||
Sbjct: 17224771 tctgtgaacgagg 17224783
Score = 454 bits (229), Expect = e-125
Identities = 229/229 (100%)
Strand = Plus / Plus
Query: 1 ctgcctggcgctgggcggggcgggaggtccgggttgatactggctgtcggcctcgcgaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17207006 ctgcctggcgctgggcggggcgggaggtccgggttgatactggctgtcggcctcgcgaca 17207065
Query: 61 cttggctgcggcggggtcgcggaaatttgcacccttggccggtccctcttcttttccggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17207066 cttggctgcggcggggtcgcggaaatttgcacccttggccggtccctcttcttttccggc 17207125
Query: 121 ggagaggttagtgccactgccttgttctgggagcttgcacggtcccggcataacgctccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17207126 ggagaggttagtgccactgccttgttctgggagcttgcacggtcccggcataacgctccc 17207185
Query: 181 cgcctttgcttcccgccgacctgaacctctagcgtcacaggtttcaccg 229
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17207186 cgcctttgcttcccgccgacctgaacctctagcgtcacaggtttcaccg 17207234
Score = 454 bits (229), Expect = e-125
Identities = 229/229 (100%)
Strand = Plus / Plus
Query: 1 ctgcctggcgctgggcggggcgggaggtccgggttgatactggctgtcggcctcgcgaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17218991 ctgcctggcgctgggcggggcgggaggtccgggttgatactggctgtcggcctcgcgaca 17219050
Query: 61 cttggctgcggcggggtcgcggaaatttgcacccttggccggtccctcttcttttccggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17219051 cttggctgcggcggggtcgcggaaatttgcacccttggccggtccctcttcttttccggc 17219110
Query: 121 ggagaggttagtgccactgccttgttctgggagcttgcacggtcccggcataacgctccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17219111 ggagaggttagtgccactgccttgttctgggagcttgcacggtcccggcataacgctccc 17219170
Query: 181 cgcctttgcttcccgccgacctgaacctctagcgtcacaggtttcaccg 229
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17219171 cgcctttgcttcccgccgacctgaacctctagcgtcacaggtttcaccg 17219219
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 719 aggacctgatgcactgcactgcgtttgcaactgcagatgaatatcatcttggaaatctct 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17233496 aggacctgatgcactgcactgcgtttgcaactgcagatgaatatcatcttggaaatctct 17233555
Query: 779 ctcaagatctggccgcccatggatatgtggaagtaacaagcttgcctagag 829
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17233556 ctcaagatctggccgcccatggatatgtggaagtaacaagcttgcctagag 17233606
Score = 212 bits (107), Expect = 4e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1047 gggacagtcaaaacttcacagaggggaaatcaggttaaattcagagctagatatagatga 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17243547 gggacagtcaaaacttcacagaggggaaatcaggttaaattcagagctagatatagatga 17243606
Query: 1107 cgccatcctagagaaatttgctttctcaaatgctctttgcctttcag 1153
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17243607 cgccatcctagagaaatttgctttctcaaatgctctttgcctttcag 17243653
Score = 202 bits (102), Expect = 4e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 946 atgaagcatgtgatgcaagttctagaaaagcatgaaattcagccctacgaagtggcactg 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17240890 atgaagcatgtgatgcaagttctagaaaagcatgaaattcagccctacgaagtggcactg 17240949
Query: 1006 gtacactgggagaatgaagagcttaactacataaaaacagag 1047
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17240950 gtacactgggagaatgaagagcttaactacataaaaacagag 17240991
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 828 agatgcagccaatatcttggtgatgggtgtggaaaattctgcaaaagaaggtgatcccgg 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17236719 agatgcagccaatatcttggtgatgggtgtggaaaattctgcaaaagaaggtgatcccgg 17236778
Query: 888 aacaatattcttcttcagg 906
|||||||||||||||||||
Sbjct: 17236779 aacaatattcttcttcagg 17236797
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1151 cagtgaaactggctatctgggaggcatcgctggataaatttattgaatctattcagtcga 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17245043 cagtgaaactggctatctgggaggcatcgctggataaatttattgaatctattcagtcga 17245102
Query: 1211 ttccagagg 1219
|||||||||
Sbjct: 17245103 ttccagagg 17245111
Score = 125 bits (63), Expect = 7e-26
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 1217 aggctttaaaagctgggaaagaagtgaaactatctcatgaagaagttatgcagaaaatgg 1276
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 17245869 aggctttaaaagctgggaagaaagtgaaactatctcatgaagaagttatgcagaaaatgg 17245928
Query: 1277 gtgaactcttt 1287
|||||||||||
Sbjct: 17245929 gtgaactcttt 17245939
Score = 99.6 bits (50), Expect = 4e-18
Identities = 67/70 (95%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 1294 taagacaccgtataaacttgagttcggacttcttgatcagtcctgattttctactgggga 1353
||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||
Sbjct: 17248618 taagacaccgtataaacttgagttcggacttcttgatcactcctga-tttctact-ggga 17248675
Query: 1354 ccgagaaaat 1363
||||||||||
Sbjct: 17248676 ccgagaaaat 17248685
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 902 tcagggaaggagctgctgtgttctggaatgtgaaagacaaaact 945
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17239119 tcagggaaggagctgctgtgttctggaatgtgaaagacaaaact 17239162
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,304,526
Number of extensions: 266
Number of successful extensions: 266
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 11
Length of query: 1363
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1342
Effective length of database: 2,808,413,156
Effective search space: 3768890455352
Effective search space used: 3768890455352
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)