Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009732
(1081 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092576.1| protein C-ets-1 [Bos taurus]. 493 e-140
Alignment gi|NP_001073683.1| protein C-ets-2 [Bos taurus]. 152 4e-37
Alignment gi|NP_001068905.1| GA-binding protein alpha chain [Bos taurus]. 84 2e-16
Alignment gi|NP_001039763.1| Friend leukemia integration 1 transcription ... 69 9e-12
Alignment gi|NP_001095653.1| transcriptional regulator ERG [Bos taurus]. 66 6e-11
Alignment gi|NP_001015514.2| transcription factor ETV6 [Bos taurus]. 54 3e-07
>ref|NP_001092576.1| protein C-ets-1 [Bos taurus].
Length = 441
Score = 493 bits (1270), Expect = e-140
Identities = 240/252 (95%), Positives = 243/252 (96%)
Frame = +1
Query: 325 MKAAVDLKPTLTIIKTEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFSKEQ 504
MKAAVDLKPTLTIIKTEKVD+ELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFSKEQ
Sbjct: 1 MKAAVDLKPTLTIIKTEKVDMELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFSKEQ 60
Query: 505 QRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDF 684
QRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDF
Sbjct: 61 QRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDF 120
Query: 685 VGDILWEHLEILQKEDVKPYQVNGVNPTYPESRYTSDYFISYGIEHAQCVPPSEFSEPSF 864
VGDILWEHLEILQKEDVKPYQVNGVNP YPESRYTSDYFISYGIEHAQCVPPSEFSEPSF
Sbjct: 121 VGDILWEHLEILQKEDVKPYQVNGVNPPYPESRYTSDYFISYGIEHAQCVPPSEFSEPSF 180
Query: 865 ITESYQTLRPISSEELLSLKYENNYPPVILRDPLQTDPLQTDYFAIKQEVVTPDHMCMGR 1044
ITESYQTL PISSEELLSLKYEN+Y VILRD LQTD LQTDYFAIKQEVVTPD+MCMGR
Sbjct: 181 ITESYQTLHPISSEELLSLKYENDYSSVILRDTLQTDTLQTDYFAIKQEVVTPDNMCMGR 240
Query: 1045 TSPGKLGGXDSF 1080
S GKLGG DSF
Sbjct: 241 ASRGKLGGQDSF 252
>ref|NP_001073683.1| protein C-ets-2 [Bos taurus].
Length = 470
Score = 152 bits (385), Expect = 4e-37
Identities = 92/216 (42%), Positives = 125/216 (57%), Gaps = 4/216 (1%)
Frame = +1
Query: 190 GI*DFRKESPISRSPFPCYRSLLKRKTTGITANLL*SCLYPTPGTMKAAVDLKPTLTIIK 369
GI + + +P++ S YR LKR+ T + ++P+ + ++ L I
Sbjct: 5 GIKNMDQVAPVASS----YRGTLKRQAAFDTFDGSLLAVFPSLNEEQTLQEVPTGLDSIS 60
Query: 370 TEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFSKEQQRLGIPKDPRQWTET 549
+ + EL PLLTP SK +MSQALKATFSGF KEQ+RLGIPK+P WTE
Sbjct: 61 HDSANCEL-----------PLLTPCSKAVMSQALKATFSGFKKEQRRLGIPKNPWLWTEQ 109
Query: 550 HVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDFVGDILWEHLEILQKE 729
V W++WA NEFSL V+ Q+F M G LC LGK+ FLELAPDFVGDILWEHLE + KE
Sbjct: 110 QVCQWLLWATNEFSLVDVNLQRFGMTGQVLCNLGKERFLELAPDFVGDILWEHLEQMIKE 169
Query: 730 DVK----PYQVNGVNPTYPESRYTSDYFISYGIEHA 825
+ + Y+ N + P + + + +G+E A
Sbjct: 170 NQEKNEDQYEENSHLNSVP--HWINSNSLGFGVEQA 203
>ref|NP_001068905.1| GA-binding protein alpha chain [Bos taurus].
Length = 454
Score = 84.3 bits (207), Expect = 2e-16
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Frame = +1
Query: 433 LTPSSKEMMSQALK--ATFSGFSKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVD 606
+T S E Q + A G+ KEQ+RLGIP DP QW+ V WV+W + EFS+ +D
Sbjct: 152 ITTISDETSEQVTRWAAALEGYRKEQERLGIPYDPIQWSTDQVLHWVVWVMKEFSMTDID 211
Query: 607 FQKFCMNGAALCALGKDCFLELAPDFVGDILWEHLEILQK 726
++G LC+L ++ F + P G+ILW HLE+L+K
Sbjct: 212 LTTLNISGRELCSLSQEDFFQRVPR--GEILWSHLELLRK 249
>ref|NP_001039763.1| Friend leukemia integration 1 transcription factor [Bos taurus].
Length = 452
Score = 68.6 bits (166), Expect = 9e-12
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Frame = +1
Query: 502 QQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF-CMNGAALCALGKDCFLELAP 678
++R+ +P DP WT+ HVR W+ WA+ E+ L +D F M+G LC L K+ FL
Sbjct: 121 ERRVIVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMDGKELCKLNKEDFLRATS 180
Query: 679 DFVGDILWEHLEILQKEDVKPYQVNGVNPTYPESR 783
+ ++L HL L++ + PY N + T P SR
Sbjct: 181 LYNTEVLLSHLTYLRESSLLPY--NTTSHTDPSSR 213
>ref|NP_001095653.1| transcriptional regulator ERG [Bos taurus].
Length = 455
Score = 65.9 bits (159), Expect = 6e-11
Identities = 48/156 (30%), Positives = 70/156 (44%), Gaps = 22/156 (14%)
Frame = +1
Query: 502 QQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF-CMNGAALCALGKDCFLELAP 678
++R+ +P DP W+ HVR W+ WAV E+ L VD F ++G LC + KD F L P
Sbjct: 122 ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTP 181
Query: 679 DFVGDILWEHLEILQKEDVKPYQVNGV------NPTYPESRYTSDYF----ISYGIEHAQ 828
+ DIL HL L++ + + V +P +R T + S H
Sbjct: 182 SYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTDLPYEPPRRSAWTSHGH 241
Query: 829 CVPPSEFSEPSFIT-----------ESYQTLRPISS 903
P S+ ++PS T + YQ L P SS
Sbjct: 242 PAPQSKAAQPSPSTVPKTEDQRPQLDPYQILGPTSS 277
>ref|NP_001015514.2| transcription factor ETV6 [Bos taurus].
Length = 452
Score = 53.5 bits (127), Expect = 3e-07
Identities = 28/67 (41%), Positives = 39/67 (58%)
Frame = +1
Query: 529 PRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDFVGDILWEH 708
P W+ V W+ WA NEFSL+ +D F MNG AL L K+ F +P GD+L+E
Sbjct: 58 PMFWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSP-HSGDVLYEL 116
Query: 709 LEILQKE 729
L+ + K+
Sbjct: 117 LQHILKQ 123
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,634,130
Number of extensions: 1215591
Number of successful extensions: 4720
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4686
Number of HSP's successfully gapped: 6
Length of query: 360
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 257
Effective length of database: 14,273,310
Effective search space: 3668240670
Effective search space used: 3668240670
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009732
(1081 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546405.2| PREDICTED: similar to v-ets erythroblastosis vi... 504 e-143
Alignment gi|XP_857443.1| PREDICTED: similar to v-ets erythroblastosis vi... 491 e-139
Alignment gi|XP_544886.2| PREDICTED: similar to C-ets-2 protein isoform 1... 158 1e-38
Alignment gi|XP_859633.1| PREDICTED: similar to C-ets-2 protein isoform 2... 158 1e-38
Alignment gi|XP_535570.1| PREDICTED: similar to GA binding protein transc... 84 2e-16
Alignment gi|XP_857066.1| PREDICTED: similar to Friend leukemia integrati... 67 4e-11
Alignment gi|XP_859605.1| PREDICTED: similar to Transcriptional regulator... 66 7e-11
Alignment gi|XP_544885.2| PREDICTED: similar to v-ets erythroblastosis vi... 65 1e-10
Alignment gi|XP_857107.1| PREDICTED: similar to Friend leukemia integrati... 65 1e-10
Alignment gi|XP_857152.1| PREDICTED: similar to Friend leukemia integrati... 65 1e-10
>ref|XP_546405.2| PREDICTED: similar to v-ets erythroblastosis virus E26 oncogene
homolog 1 isoform 1 [Canis familiaris].
Length = 441
Score = 504 bits (1299), Expect = e-143
Identities = 245/252 (97%), Positives = 247/252 (98%)
Frame = +1
Query: 325 MKAAVDLKPTLTIIKTEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFSKEQ 504
MKAAVDLKPTLTIIKTEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFSKEQ
Sbjct: 1 MKAAVDLKPTLTIIKTEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFSKEQ 60
Query: 505 QRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDF 684
QRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDF
Sbjct: 61 QRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDF 120
Query: 685 VGDILWEHLEILQKEDVKPYQVNGVNPTYPESRYTSDYFISYGIEHAQCVPPSEFSEPSF 864
VGDILWEHLEILQKEDVKPYQVNGVNPTYPESRYTSDYFISYGIEHAQCVPPSEFSEPSF
Sbjct: 121 VGDILWEHLEILQKEDVKPYQVNGVNPTYPESRYTSDYFISYGIEHAQCVPPSEFSEPSF 180
Query: 865 ITESYQTLRPISSEELLSLKYENNYPPVILRDPLQTDPLQTDYFAIKQEVVTPDHMCMGR 1044
ITESYQTL PISSEELLSLKYEN+YP VILRDPLQTD LQTDYFAIKQEVVTPD+MCMGR
Sbjct: 181 ITESYQTLHPISSEELLSLKYENDYPSVILRDPLQTDTLQTDYFAIKQEVVTPDNMCMGR 240
Query: 1045 TSPGKLGGXDSF 1080
TS GKLGG DSF
Sbjct: 241 TSRGKLGGQDSF 252
>ref|XP_857443.1| PREDICTED: similar to v-ets erythroblastosis virus E26 oncogene
homolog 1 isoform 3 [Canis familiaris].
Length = 354
Score = 491 bits (1263), Expect = e-139
Identities = 238/244 (97%), Positives = 240/244 (98%)
Frame = +1
Query: 325 MKAAVDLKPTLTIIKTEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFSKEQ 504
MKAAVDLKPTLTIIKTEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFSKEQ
Sbjct: 1 MKAAVDLKPTLTIIKTEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFSKEQ 60
Query: 505 QRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDF 684
QRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDF
Sbjct: 61 QRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDF 120
Query: 685 VGDILWEHLEILQKEDVKPYQVNGVNPTYPESRYTSDYFISYGIEHAQCVPPSEFSEPSF 864
VGDILWEHLEILQKEDVKPYQVNGVNPTYPESRYTSDYFISYGIEHAQCVPPSEFSEPSF
Sbjct: 121 VGDILWEHLEILQKEDVKPYQVNGVNPTYPESRYTSDYFISYGIEHAQCVPPSEFSEPSF 180
Query: 865 ITESYQTLRPISSEELLSLKYENNYPPVILRDPLQTDPLQTDYFAIKQEVVTPDHMCMGR 1044
ITESYQTL PISSEELLSLKYEN+YP VILRDPLQTD LQTDYFAIKQEVVTPD+MCMGR
Sbjct: 181 ITESYQTLHPISSEELLSLKYENDYPSVILRDPLQTDTLQTDYFAIKQEVVTPDNMCMGR 240
Query: 1045 TSPG 1056
TS G
Sbjct: 241 TSRG 244
>ref|XP_544886.2| PREDICTED: similar to C-ets-2 protein isoform 1 [Canis familiaris].
Length = 469
Score = 158 bits (399), Expect = 1e-38
Identities = 94/216 (43%), Positives = 127/216 (58%), Gaps = 4/216 (1%)
Frame = +1
Query: 190 GI*DFRKESPISRSPFPCYRSLLKRKTTGITANLL*SCLYPTPGTMKAAVDLKPTLTIIK 369
GI + + +P+S S YR LKR+ T + ++P+ + ++ L I
Sbjct: 5 GIKNMDQVAPVSNS----YRGTLKRQPAFDTFDGSLFAIFPSLNEEQTLQEVPTGLDSIS 60
Query: 370 TEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFSKEQQRLGIPKDPRQWTET 549
+ + EL PLLTP SK +MSQALKATFSGF KEQ+RLGIPK+P WTE
Sbjct: 61 HDSTNCEL-----------PLLTPCSKAVMSQALKATFSGFKKEQRRLGIPKNPWLWTEQ 109
Query: 550 HVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDFVGDILWEHLEILQKE 729
V W++WA+NEFSL V+ Q+F MNG LC LGK+ FLELAPDFVGDILWEHLE + KE
Sbjct: 110 QVCQWLLWAINEFSLVNVNLQRFGMNGQVLCNLGKERFLELAPDFVGDILWEHLEQMIKE 169
Query: 730 DVK----PYQVNGVNPTYPESRYTSDYFISYGIEHA 825
+ + Y+ N + P + + + +G+E A
Sbjct: 170 NQEKTEDQYEENSHLNSVP--HWINSNSLGFGVEQA 203
>ref|XP_859633.1| PREDICTED: similar to C-ets-2 protein isoform 2 [Canis familiaris].
Length = 492
Score = 158 bits (399), Expect = 1e-38
Identities = 94/216 (43%), Positives = 127/216 (58%), Gaps = 4/216 (1%)
Frame = +1
Query: 190 GI*DFRKESPISRSPFPCYRSLLKRKTTGITANLL*SCLYPTPGTMKAAVDLKPTLTIIK 369
GI + + +P+S S YR LKR+ T + ++P+ + ++ L I
Sbjct: 5 GIKNMDQVAPVSNS----YRGTLKRQPAFDTFDGSLFAIFPSLNEEQTLQEVPTGLDSIS 60
Query: 370 TEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFSKEQQRLGIPKDPRQWTET 549
+ + EL PLLTP SK +MSQALKATFSGF KEQ+RLGIPK+P WTE
Sbjct: 61 HDSTNCEL-----------PLLTPCSKAVMSQALKATFSGFKKEQRRLGIPKNPWLWTEQ 109
Query: 550 HVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDFVGDILWEHLEILQKE 729
V W++WA+NEFSL V+ Q+F MNG LC LGK+ FLELAPDFVGDILWEHLE + KE
Sbjct: 110 QVCQWLLWAINEFSLVNVNLQRFGMNGQVLCNLGKERFLELAPDFVGDILWEHLEQMIKE 169
Query: 730 DVK----PYQVNGVNPTYPESRYTSDYFISYGIEHA 825
+ + Y+ N + P + + + +G+E A
Sbjct: 170 NQEKTEDQYEENSHLNSVP--HWINSNSLGFGVEQA 203
>ref|XP_535570.1| PREDICTED: similar to GA binding protein transcription factor,
alpha subunit (60kD) [Canis familiaris].
Length = 454
Score = 84.3 bits (207), Expect = 2e-16
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Frame = +1
Query: 433 LTPSSKEMMSQALK--ATFSGFSKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVD 606
+T S E Q + A G+ KEQ+RLGIP DP QW+ V WV+W + EFS+ +D
Sbjct: 152 ITTISDETSEQVTRWAAALEGYRKEQERLGIPYDPIQWSTDQVLHWVVWVMKEFSMTDID 211
Query: 607 FQKFCMNGAALCALGKDCFLELAPDFVGDILWEHLEILQK 726
++G LC+L ++ F + P G+ILW HLE+L+K
Sbjct: 212 LTTLNISGRELCSLNQEDFFQRVPR--GEILWSHLELLRK 249
>ref|XP_857066.1| PREDICTED: similar to Friend leukemia integration 1 transcription
factor (Fli-1 proto-oncogene) (ERGB transcription
factor) isoform 3 [Canis familiaris].
Length = 484
Score = 66.6 bits (161), Expect = 4e-11
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Frame = +1
Query: 502 QQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF-CMNGAALCALGKDCFLELAP 678
++R+ +P DP WT+ HVR W+ WA+ E+ L +D F M+G LC + K+ FL
Sbjct: 121 ERRVIVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMDGKELCKMNKEDFLRATS 180
Query: 679 DFVGDILWEHLEILQKEDVKPYQVNGVNPTYPESRYTSDYFISYGIEHA 825
+ ++L HL L +E +P+ V ESR T+ + G+ HA
Sbjct: 181 LYNTEVLLSHLSYL-RETPQPHLVLDT----VESRLTNQMHLVLGLRHA 224
>ref|XP_859605.1| PREDICTED: similar to Transcriptional regulator ERG (Transforming
protein ERG) isoform 3 [Canis familiaris].
Length = 318
Score = 65.9 bits (159), Expect = 7e-11
Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 24/158 (15%)
Frame = +1
Query: 502 QQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF-CMNGAALCALGKDCFLELAP 678
++R+ +P DP W+ HVR W+ WAV E+ L VD F ++G LC + KD F L P
Sbjct: 122 ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTP 181
Query: 679 DFVGDILWEHLEILQK--------EDV------KPYQVNGVNPTYPESRYTSDYFISYGI 816
+ DIL HL L++ +DV P ++ N P + S+G
Sbjct: 182 SYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTDLPYDPPRRSAWTSHGH 241
Query: 817 EHAQ---------CVPPSEFSEPSFITESYQTLRPISS 903
Q VP +E P + YQ L P SS
Sbjct: 242 PTPQSKAAQPSPSAVPKTEDQRPQL--DPYQILGPTSS 277
>ref|XP_544885.2| PREDICTED: similar to v-ets erythroblastosis virus E26 oncogene
like isoform 1 isoform 1 [Canis familiaris].
Length = 342
Score = 65.1 bits (157), Expect = 1e-10
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +1
Query: 502 QQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF-CMNGAALCALGKDCFLELAP 678
++R+ +P DP W+ HVR W+ WAV E+ L VD F ++G LC + KD F L P
Sbjct: 122 ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTP 181
Query: 679 DFVGDILWEHLEILQK 726
+ DIL HL L++
Sbjct: 182 SYNADILLSHLHYLRE 197
>ref|XP_857107.1| PREDICTED: similar to Friend leukemia integration 1 transcription
factor (Fli-1 proto-oncogene) (ERGB transcription
factor) isoform 4 [Canis familiaris].
Length = 432
Score = 65.1 bits (157), Expect = 1e-10
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Frame = +1
Query: 502 QQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF-CMNGAALCALGKDCFLELAP 678
++R+ +P DP WT+ HVR W+ WA+ E+ L +D F M+G LC + K+ FL
Sbjct: 121 ERRVIVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMDGKELCKMNKEDFLRATS 180
Query: 679 DFVGDILWEHLEILQKEDVKPYQVNGVNPTYPESRYTSDYFISYGIEHAQCVPPSEFSEP 858
+ ++L HL L++ N + T SR + + G A S+ +E
Sbjct: 181 LYNTEVLLSHLSYLRESKCSLLAYNTTSHTDQSSRLS----VKEGPPLAGAQAMSKNTEQ 236
Query: 859 SFITESYQTLRPISS 903
+ YQ L P SS
Sbjct: 237 RPQPDPYQILGPTSS 251
>ref|XP_857152.1| PREDICTED: similar to Friend leukemia integration 1 transcription
factor (Fli-1 proto-oncogene) (ERGB transcription
factor) isoform 5 [Canis familiaris].
Length = 459
Score = 64.7 bits (156), Expect = 1e-10
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 1/157 (0%)
Frame = +1
Query: 502 QQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF-CMNGAALCALGKDCFLELAP 678
++R+ +P DP WT+ HVR W+ WA+ E+ L +D F M+G LC + K+ FL
Sbjct: 121 ERRVIVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMDGKELCKMNKEDFLRATS 180
Query: 679 DFVGDILWEHLEILQKEDVKPYQVNGVNPTYPESRYTSDYFISYGIEHAQCVPPSEFSEP 858
+ ++L HL L++ ++ V + S S+G P S E
Sbjct: 181 LYNTEVLLSHLSYLRETPQPHLVLDTVESRLTNQMHLSHKRASWGGLCVSHPPTSILPEA 240
Query: 859 SFITESYQTLRPISSEELLSLKYENNYPPVILRDPLQ 969
S+ + ++ +P S + +S E P DP Q
Sbjct: 241 SWRVDRHEASKP--SSQAMSKNTEQRPQP----DPYQ 271
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,657,591
Number of extensions: 1261481
Number of successful extensions: 5032
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 4986
Number of HSP's successfully gapped: 19
Length of query: 360
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 256
Effective length of database: 15,407,560
Effective search space: 3944335360
Effective search space used: 3944335360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009732
(1081 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001156358.1| protein C-ets-1 [Sus scrofa]. 459 e-130
Alignment gi|XP_001928504.2| PREDICTED: protein C-ets-2 [Sus scrofa]. 111 8e-25
Alignment gi|XP_003359008.1| PREDICTED: transcriptional regulator ERG-lik... 65 7e-11
Alignment gi|XP_003130115.2| PREDICTED: Friend leukemia integration 1 tra... 63 2e-10
Alignment gi|XP_001924633.2| PREDICTED: transcription factor ETV6 [Sus sc... 54 1e-07
Alignment gi|XP_001927597.3| PREDICTED: transcription factor ETV7-like [S... 51 1e-06
Alignment gi|NP_001177183.1| SAM pointed domain-containing Ets transcript... 49 6e-06
>ref|NP_001156358.1| protein C-ets-1 [Sus scrofa].
Length = 485
Score = 459 bits (1182), Expect = e-130
Identities = 220/225 (97%), Positives = 222/225 (98%)
Frame = +1
Query: 406 DMECADVPLLTPSSKEMMSQALKATFSGFSKEQQRLGIPKDPRQWTETHVRDWVMWAVNE 585
DMECADVPLLTPSSKEMMSQALKATFSGFSKEQQRLGIPKDPRQWTETHVRDWVMWAVNE
Sbjct: 72 DMECADVPLLTPSSKEMMSQALKATFSGFSKEQQRLGIPKDPRQWTETHVRDWVMWAVNE 131
Query: 586 FSLKGVDFQKFCMNGAALCALGKDCFLELAPDFVGDILWEHLEILQKEDVKPYQVNGVNP 765
FSLKGVDFQKFCMNGAALCALGKDCFLELAPDFVGDILWEHLEILQKEDVKPYQVNGVNP
Sbjct: 132 FSLKGVDFQKFCMNGAALCALGKDCFLELAPDFVGDILWEHLEILQKEDVKPYQVNGVNP 191
Query: 766 TYPESRYTSDYFISYGIEHAQCVPPSEFSEPSFITESYQTLRPISSEELLSLKYENNYPP 945
TYPESRYTSDYFISYGIEHAQCVPPSEFSEPSFITESYQTL PISSEELLSLKYEN+YPP
Sbjct: 192 TYPESRYTSDYFISYGIEHAQCVPPSEFSEPSFITESYQTLHPISSEELLSLKYENDYPP 251
Query: 946 VILRDPLQTDPLQTDYFAIKQEVVTPDHMCMGRTSPGKLGGXDSF 1080
VILRDPLQTDPLQTDYFAIKQEVVTPD+MCMGRTS GKLGG DSF
Sbjct: 252 VILRDPLQTDPLQTDYFAIKQEVVTPDNMCMGRTSRGKLGGQDSF 296
>ref|XP_001928504.2| PREDICTED: protein C-ets-2 [Sus scrofa].
Length = 486
Score = 111 bits (277), Expect = 8e-25
Identities = 66/144 (45%), Positives = 83/144 (57%), Gaps = 4/144 (2%)
Frame = +1
Query: 400 SPDMECADVPLLTPSSKEMMSQALKATFSGFSKEQQRLGIPKDPRQWTETHVRDWVMWAV 579
S D ++PLLTP SK +MSQALKATFSGF KEQ RLGIPK+P WTE
Sbjct: 59 SHDSTNCELPLLTPCSKAVMSQALKATFSGFKKEQCRLGIPKNPWLWTEQ---------- 108
Query: 580 NEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDFVGDILWEHLEIL----QKEDVKPYQ 747
Q+F M G LC LGK+ FLELAPDFVGDILWEHL Q++ + Y+
Sbjct: 109 ----------QRFGMTGQVLCNLGKERFLELAPDFVGDILWEHLXXSFSENQEKTEEQYE 158
Query: 748 VNGVNPTYPESRYTSDYFISYGIE 819
N +P ++ + + +G+E
Sbjct: 159 EN--SPLNSVPQWINSNSLGFGVE 180
>ref|XP_003359008.1| PREDICTED: transcriptional regulator ERG-like [Sus scrofa].
Length = 575
Score = 65.1 bits (157), Expect = 7e-11
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +1
Query: 502 QQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF-CMNGAALCALGKDCFLELAP 678
++R+ +P DP W+ HVR W+ WAV E+ L VD F ++G LC + KD F L P
Sbjct: 218 ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTP 277
Query: 679 DFVGDILWEHLEILQK 726
+ DIL HL L++
Sbjct: 278 SYNADILLSHLHYLRE 293
>ref|XP_003130115.2| PREDICTED: Friend leukemia integration 1 transcription factor-like
[Sus scrofa].
Length = 499
Score = 63.2 bits (152), Expect = 2e-10
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = +1
Query: 502 QQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF-CMNGAALCALGKDCFLELAP 678
++R+ +P DP WT+ HVR W+ WA+ E+ L +D F M+G LC + K+ FL
Sbjct: 289 ERRVIVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMDGKELCKMNKEDFLRATS 348
Query: 679 DFVGDILWEHLEILQKEDVKPYQVNGVNPTYPESR 783
+ ++L HL L++ + Y N + T P R
Sbjct: 349 LYNTEVLLSHLNYLRESSLLAY--NTTSHTDPSPR 381
>ref|XP_001924633.2| PREDICTED: transcription factor ETV6 [Sus scrofa].
Length = 402
Score = 54.3 bits (129), Expect = 1e-07
Identities = 28/67 (41%), Positives = 39/67 (58%)
Frame = +1
Query: 529 PRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDFVGDILWEH 708
P W+ V W+ WA NEFSL+ +D F MNG AL L K+ F +P GD+L+E
Sbjct: 8 PMYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSP-HSGDVLYEL 66
Query: 709 LEILQKE 729
L+ + K+
Sbjct: 67 LQHILKQ 73
>ref|XP_001927597.3| PREDICTED: transcription factor ETV7-like [Sus scrofa].
Length = 506
Score = 50.8 bits (120), Expect = 1e-06
Identities = 32/81 (39%), Positives = 42/81 (51%)
Frame = +1
Query: 487 GFSKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFL 666
G K RL I P W+ V W+ WA E+SL+ F MNG ALC L KD F
Sbjct: 162 GLCKLPGRLRI--QPVLWSREDVLHWLRWAEQEYSLQHTGEHSFEMNGRALCILTKDDFR 219
Query: 667 ELAPDFVGDILWEHLEILQKE 729
AP GD+L+E L+ ++ +
Sbjct: 220 LRAP-ASGDVLYELLQYIKTQ 239
>ref|NP_001177183.1| SAM pointed domain-containing Ets transcription factor [Sus
scrofa].
Length = 335
Score = 48.5 bits (114), Expect = 6e-06
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Frame = +1
Query: 400 SPDMECADVPLLTPSSKEMMSQALKATFSGFSKEQQRLGIPKDPRQWTETHVRDWVMWAV 579
S D+ + + L S +++ S + + L I DP W+ ++V+ W++W
Sbjct: 104 SLDLAPSGLTLEEHSLEQVQSMVVGEVLKDIETACKLLNITADPVDWSPSNVQKWLLWTE 163
Query: 580 NEFSLK--GVDFQKFCMNGAALCALGKDCFLELAPDFVGDILWEHLEILQ-----KEDVK 738
+++ L G FQ+ + G LCA+ ++ F + +P GD+L HL+I + KE
Sbjct: 164 HQYRLPPVGKAFQE--LGGKELCAMSEEQFRQRSP-LGGDVLHAHLDIWKSAAWMKERAS 220
Query: 739 PYQVNGVNPTYPES 780
P ++ T ES
Sbjct: 221 PGAIHYCASTSEES 234
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,897,678
Number of extensions: 781985
Number of successful extensions: 3122
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3104
Number of HSP's successfully gapped: 7
Length of query: 360
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 260
Effective length of database: 8,854,232
Effective search space: 2302100320
Effective search space used: 2302100320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009732
(1081 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035938.2| protein C-ets-1 isoform 1 [Mus musculus]. 489 e-138
Alignment gi|NP_001033731.1| protein C-ets-1 isoform 2 [Mus musculus]. 476 e-134
Alignment gi|NP_035939.3| protein C-ets-2 [Mus musculus]. 149 5e-36
Alignment gi|NP_032091.2| GA-binding protein alpha chain [Mus musculus]. 83 4e-16
Alignment gi|NP_598420.1| transcriptional regulator ERG [Mus musculus]. 64 2e-10
Alignment gi|NP_032052.1| Friend leukemia integration 1 transcription fac... 63 5e-10
Alignment gi|NP_031987.3| transcription factor ETV6 [Mus musculus]. 57 2e-08
Alignment gi|NP_038919.1| SAM pointed domain-containing Ets transcription... 49 9e-06
>ref|NP_035938.2| protein C-ets-1 isoform 1 [Mus musculus].
Length = 440
Score = 489 bits (1260), Expect = e-138
Identities = 236/252 (93%), Positives = 244/252 (96%)
Frame = +1
Query: 325 MKAAVDLKPTLTIIKTEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFSKEQ 504
MKAAVDLKPTLTIIKTEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGF+KEQ
Sbjct: 1 MKAAVDLKPTLTIIKTEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFTKEQ 60
Query: 505 QRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDF 684
QRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCM+GAALCALGK+CFLELAPDF
Sbjct: 61 QRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAALCALGKECFLELAPDF 120
Query: 685 VGDILWEHLEILQKEDVKPYQVNGVNPTYPESRYTSDYFISYGIEHAQCVPPSEFSEPSF 864
VGDILWEHLEILQKEDVKPYQVNG NPTYPES YTSDYFISYGIEHAQCVPPSEFSEPSF
Sbjct: 121 VGDILWEHLEILQKEDVKPYQVNGANPTYPESCYTSDYFISYGIEHAQCVPPSEFSEPSF 180
Query: 865 ITESYQTLRPISSEELLSLKYENNYPPVILRDPLQTDPLQTDYFAIKQEVVTPDHMCMGR 1044
ITESYQTL PISSEELLSLKYEN+YP VIL+DPLQTD LQTDYFAIKQEV+TPD+MC+GR
Sbjct: 181 ITESYQTLHPISSEELLSLKYENDYPSVILQDPLQTDTLQTDYFAIKQEVLTPDNMCLGR 240
Query: 1045 TSPGKLGGXDSF 1080
S GKLGG DSF
Sbjct: 241 ASRGKLGGQDSF 252
>ref|NP_001033731.1| protein C-ets-1 isoform 2 [Mus musculus].
Length = 353
Score = 476 bits (1224), Expect = e-134
Identities = 229/244 (93%), Positives = 237/244 (97%)
Frame = +1
Query: 325 MKAAVDLKPTLTIIKTEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFSKEQ 504
MKAAVDLKPTLTIIKTEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGF+KEQ
Sbjct: 1 MKAAVDLKPTLTIIKTEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFTKEQ 60
Query: 505 QRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDF 684
QRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCM+GAALCALGK+CFLELAPDF
Sbjct: 61 QRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAALCALGKECFLELAPDF 120
Query: 685 VGDILWEHLEILQKEDVKPYQVNGVNPTYPESRYTSDYFISYGIEHAQCVPPSEFSEPSF 864
VGDILWEHLEILQKEDVKPYQVNG NPTYPES YTSDYFISYGIEHAQCVPPSEFSEPSF
Sbjct: 121 VGDILWEHLEILQKEDVKPYQVNGANPTYPESCYTSDYFISYGIEHAQCVPPSEFSEPSF 180
Query: 865 ITESYQTLRPISSEELLSLKYENNYPPVILRDPLQTDPLQTDYFAIKQEVVTPDHMCMGR 1044
ITESYQTL PISSEELLSLKYEN+YP VIL+DPLQTD LQTDYFAIKQEV+TPD+MC+GR
Sbjct: 181 ITESYQTLHPISSEELLSLKYENDYPSVILQDPLQTDTLQTDYFAIKQEVLTPDNMCLGR 240
Query: 1045 TSPG 1056
S G
Sbjct: 241 ASRG 244
>ref|NP_035939.3| protein C-ets-2 [Mus musculus].
Length = 468
Score = 149 bits (375), Expect = 5e-36
Identities = 72/111 (64%), Positives = 85/111 (76%)
Frame = +1
Query: 400 SPDMECADVPLLTPSSKEMMSQALKATFSGFSKEQQRLGIPKDPRQWTETHVRDWVMWAV 579
S D ++PLLTP SK +MSQALKATFSGF KEQ+RLGIPK+P W+E V W++WA
Sbjct: 60 SHDSASCELPLLTPCSKAVMSQALKATFSGFQKEQRRLGIPKNPWLWSEQQVCQWLLWAT 119
Query: 580 NEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDFVGDILWEHLEILQKED 732
NEFSL V+ +F MNG LC LGK+ FLELAPDFVGDILWEHLE + KE+
Sbjct: 120 NEFSLVNVNLHQFGMNGQMLCNLGKERFLELAPDFVGDILWEHLEQMIKEN 170
>ref|NP_032091.2| GA-binding protein alpha chain [Mus musculus].
Length = 454
Score = 82.8 bits (203), Expect = 4e-16
Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 26/164 (15%)
Frame = +1
Query: 313 TPGTMKAAVD------LKPTLTIIKTEKV--DLELFPSPDMECADVPL------------ 432
T GT++ +V ++P L I++ K +E+ PD A+
Sbjct: 88 TDGTVQLSVQVISYQGMEPKLNILEIVKTAETVEVVIDPDAHHAEAEAHLVEEAQVITLD 147
Query: 433 ----LTPSSKEMMSQALK--ATFSGFSKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSL 594
+T S E Q + A G+ KEQ+RLGIP DP W+ V WV+W + EFS+
Sbjct: 148 GTKHITTISDETSEQVTRWAAALEGYRKEQERLGIPYDPIHWSTDQVLHWVVWVMKEFSM 207
Query: 595 KGVDFQKFCMNGAALCALGKDCFLELAPDFVGDILWEHLEILQK 726
+D ++G LC+L ++ F + P G+ILW HLE+L+K
Sbjct: 208 TDIDLTTLNISGRELCSLNQEDFFQRVPR--GEILWSHLELLRK 249
>ref|NP_598420.1| transcriptional regulator ERG [Mus musculus].
Length = 486
Score = 64.3 bits (155), Expect = 2e-10
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +1
Query: 502 QQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF-CMNGAALCALGKDCFLELAP 678
++R+ +P DP W+ HVR W+ WAV E+ L VD F ++G LC + KD F L P
Sbjct: 129 ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLLDVDVLLFQNIDGKELCKMTKDDFQRLTP 188
Query: 679 DFVGDILWEHLEILQK 726
+ DIL HL L++
Sbjct: 189 SYNADILLSHLHYLRE 204
>ref|NP_032052.1| Friend leukemia integration 1 transcription factor [Mus musculus].
Length = 452
Score = 62.8 bits (151), Expect = 5e-10
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +1
Query: 502 QQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF-CMNGAALCALGKDCFLELAP 678
++R+ +P DP WT+ HVR W+ WA+ E+ L +D F M+G LC + K+ FL
Sbjct: 121 ERRVIVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMDGKELCKMNKEDFLRATS 180
Query: 679 DFVGDILWEHLEILQKEDVKPY 744
+ ++L HL L++ + Y
Sbjct: 181 AYNTEVLLSHLSYLRESSLLAY 202
>ref|NP_031987.3| transcription factor ETV6 [Mus musculus].
Length = 485
Score = 57.0 bits (136), Expect = 2e-08
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 4/131 (3%)
Frame = +1
Query: 349 PTLTIIKTEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFSKEQQRLGIPK- 525
P + IK E++ + P+ A TP + +AL+ E+ + +P
Sbjct: 5 PAQSSIKQERIS---YTPPESPVASHRSSTPLHVHTVPRALRM-------EEDSIHLPTH 54
Query: 526 ---DPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDFVGDI 696
P W+ V W+ WA NEFSL+ ++ KF MNG AL L K+ F +P GD+
Sbjct: 55 LRLQPIYWSRDDVAQWLKWAENEFSLRPIESNKFEMNGKALLLLTKEDFRYRSP-HSGDV 113
Query: 697 LWEHLEILQKE 729
L+E L+ + K+
Sbjct: 114 LYELLQHILKQ 124
>ref|NP_038919.1| SAM pointed domain-containing Ets transcription factor [Mus
musculus].
Length = 325
Score = 48.5 bits (114), Expect = 9e-06
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Frame = +1
Query: 388 ELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFSKEQQRLGIPKDPRQWTETHVRDWV 567
E P D + + L S +++ S + + L I DP W+ +V+ W+
Sbjct: 90 EQCPVIDSQASGSTLDEHSLEQVQSMVVGEVLKDIETACKLLNITADPGDWSPGNVQKWL 149
Query: 568 MWAVNEFSL--KGVDFQKFCMNGAALCALGKDCFLELAPDFVGDILWEHLEI 717
+W +++ L G FQ+ + G LCA+ ++ F + AP GD+L HL+I
Sbjct: 150 LWTEHQYRLPPAGKAFQE--LGGKELCAMSEEQFRQRAP-LGGDVLHAHLDI 198
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,933,780
Number of extensions: 1023202
Number of successful extensions: 3844
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3813
Number of HSP's successfully gapped: 8
Length of query: 360
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 257
Effective length of database: 12,523,851
Effective search space: 3218629707
Effective search space used: 3218629707
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009732
(1081 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005229.1| protein C-ets-1 isoform 2 [Homo sapiens]. 499 e-141
Alignment gi|NP_001137292.1| protein C-ets-1 isoform 1 [Homo sapiens]. 448 e-126
Alignment gi|NP_005230.1| protein C-ets-2 [Homo sapiens]. 152 5e-37
Alignment gi|NP_001184226.1| GA-binding protein alpha chain [Homo sapiens]. 84 2e-16
Alignment gi|NP_002031.2| GA-binding protein alpha chain [Homo sapiens]. 84 2e-16
Alignment gi|NP_001161153.1| Friend leukemia integration 1 transcription ... 64 3e-10
Alignment gi|NP_002008.2| Friend leukemia integration 1 transcription fac... 64 3e-10
Alignment gi|NP_001230361.1| transcriptional regulator ERG isoform 6 [Hom... 63 4e-10
Alignment gi|NP_001230358.1| transcriptional regulator ERG isoform 5 [Hom... 63 4e-10
Alignment gi|NP_001129627.1| transcriptional regulator ERG isoform 4 [Hom... 63 4e-10
>ref|NP_005229.1| protein C-ets-1 isoform 2 [Homo sapiens].
Length = 441
Score = 499 bits (1286), Expect = e-141
Identities = 242/252 (96%), Positives = 245/252 (97%)
Frame = +1
Query: 325 MKAAVDLKPTLTIIKTEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFSKEQ 504
MKAAVDLKPTLTIIKTEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGF+KEQ
Sbjct: 1 MKAAVDLKPTLTIIKTEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFTKEQ 60
Query: 505 QRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDF 684
QRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDF
Sbjct: 61 QRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDF 120
Query: 685 VGDILWEHLEILQKEDVKPYQVNGVNPTYPESRYTSDYFISYGIEHAQCVPPSEFSEPSF 864
VGDILWEHLEILQKEDVKPYQVNGVNP YPESRYTSDYFISYGIEHAQCVPPSEFSEPSF
Sbjct: 121 VGDILWEHLEILQKEDVKPYQVNGVNPAYPESRYTSDYFISYGIEHAQCVPPSEFSEPSF 180
Query: 865 ITESYQTLRPISSEELLSLKYENNYPPVILRDPLQTDPLQTDYFAIKQEVVTPDHMCMGR 1044
ITESYQTL PISSEELLSLKYEN+YP VILRDPLQTD LQ DYFAIKQEVVTPD+MCMGR
Sbjct: 181 ITESYQTLHPISSEELLSLKYENDYPSVILRDPLQTDTLQNDYFAIKQEVVTPDNMCMGR 240
Query: 1045 TSPGKLGGXDSF 1080
TS GKLGG DSF
Sbjct: 241 TSRGKLGGQDSF 252
>ref|NP_001137292.1| protein C-ets-1 isoform 1 [Homo sapiens].
Length = 485
Score = 448 bits (1153), Expect = e-126
Identities = 215/225 (95%), Positives = 218/225 (96%)
Frame = +1
Query: 406 DMECADVPLLTPSSKEMMSQALKATFSGFSKEQQRLGIPKDPRQWTETHVRDWVMWAVNE 585
DMECADVPLLTPSSKEMMSQALKATFSGF+KEQQRLGIPKDPRQWTETHVRDWVMWAVNE
Sbjct: 72 DMECADVPLLTPSSKEMMSQALKATFSGFTKEQQRLGIPKDPRQWTETHVRDWVMWAVNE 131
Query: 586 FSLKGVDFQKFCMNGAALCALGKDCFLELAPDFVGDILWEHLEILQKEDVKPYQVNGVNP 765
FSLKGVDFQKFCMNGAALCALGKDCFLELAPDFVGDILWEHLEILQKEDVKPYQVNGVNP
Sbjct: 132 FSLKGVDFQKFCMNGAALCALGKDCFLELAPDFVGDILWEHLEILQKEDVKPYQVNGVNP 191
Query: 766 TYPESRYTSDYFISYGIEHAQCVPPSEFSEPSFITESYQTLRPISSEELLSLKYENNYPP 945
YPESRYTSDYFISYGIEHAQCVPPSEFSEPSFITESYQTL PISSEELLSLKYEN+YP
Sbjct: 192 AYPESRYTSDYFISYGIEHAQCVPPSEFSEPSFITESYQTLHPISSEELLSLKYENDYPS 251
Query: 946 VILRDPLQTDPLQTDYFAIKQEVVTPDHMCMGRTSPGKLGGXDSF 1080
VILRDPLQTD LQ DYFAIKQEVVTPD+MCMGRTS GKLGG DSF
Sbjct: 252 VILRDPLQTDTLQNDYFAIKQEVVTPDNMCMGRTSRGKLGGQDSF 296
>ref|NP_005230.1| protein C-ets-2 [Homo sapiens].
Length = 469
Score = 152 bits (384), Expect = 5e-37
Identities = 86/181 (47%), Positives = 112/181 (61%)
Frame = +1
Query: 190 GI*DFRKESPISRSPFPCYRSLLKRKTTGITANLL*SCLYPTPGTMKAAVDLKPTLTIIK 369
GI + + +P++ S YR LKR+ T + ++P+ + ++ L I
Sbjct: 5 GIKNMDQVAPVANS----YRGTLKRQPAFDTFDGSLFAVFPSLNEEQTLQEVPTGLDSIS 60
Query: 370 TEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFSKEQQRLGIPKDPRQWTET 549
+ + EL PLLTP SK +MSQALKATFSGF KEQ+RLGIPK+P W+E
Sbjct: 61 HDSANCEL-----------PLLTPCSKAVMSQALKATFSGFKKEQRRLGIPKNPWLWSEQ 109
Query: 550 HVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKDCFLELAPDFVGDILWEHLEILQKE 729
V W++WA NEFSL V+ Q+F MNG LC LGK+ FLELAPDFVGDILWEHLE + KE
Sbjct: 110 QVCQWLLWATNEFSLVNVNLQRFGMNGQMLCNLGKERFLELAPDFVGDILWEHLEQMIKE 169
Query: 730 D 732
+
Sbjct: 170 N 170
>ref|NP_001184226.1| GA-binding protein alpha chain [Homo sapiens].
Length = 454
Score = 84.3 bits (207), Expect = 2e-16
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Frame = +1
Query: 433 LTPSSKEMMSQALK--ATFSGFSKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVD 606
+T S E Q + A G+ KEQ+RLGIP DP QW+ V WV+W + EFS+ +D
Sbjct: 152 ITTISDETSEQVTRWAAALEGYRKEQERLGIPYDPIQWSTDQVLHWVVWVMKEFSMTDID 211
Query: 607 FQKFCMNGAALCALGKDCFLELAPDFVGDILWEHLEILQK 726
++G LC+L ++ F + P G+ILW HLE+L+K
Sbjct: 212 LTTLNISGRELCSLNQEDFFQRVPR--GEILWSHLELLRK 249
>ref|NP_002031.2| GA-binding protein alpha chain [Homo sapiens].
Length = 454
Score = 84.3 bits (207), Expect = 2e-16
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Frame = +1
Query: 433 LTPSSKEMMSQALK--ATFSGFSKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVD 606
+T S E Q + A G+ KEQ+RLGIP DP QW+ V WV+W + EFS+ +D
Sbjct: 152 ITTISDETSEQVTRWAAALEGYRKEQERLGIPYDPIQWSTDQVLHWVVWVMKEFSMTDID 211
Query: 607 FQKFCMNGAALCALGKDCFLELAPDFVGDILWEHLEILQK 726
++G LC+L ++ F + P G+ILW HLE+L+K
Sbjct: 212 LTTLNISGRELCSLNQEDFFQRVPR--GEILWSHLELLRK 249
>ref|NP_001161153.1| Friend leukemia integration 1 transcription factor isoform 2 [Homo
sapiens].
Length = 419
Score = 63.5 bits (153), Expect = 3e-10
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +1
Query: 502 QQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF-CMNGAALCALGKDCFLELAP 678
++R+ +P DP WT+ HVR W+ WA+ E+SL +D F M+G LC + K+ FL
Sbjct: 88 ERRVIVPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATT 147
Query: 679 DFVGDILWEHLEILQKEDVKPY 744
+ ++L HL L++ + Y
Sbjct: 148 LYNTEVLLSHLSYLRESSLLAY 169
>ref|NP_002008.2| Friend leukemia integration 1 transcription factor isoform 1 [Homo
sapiens].
Length = 452
Score = 63.5 bits (153), Expect = 3e-10
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +1
Query: 502 QQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF-CMNGAALCALGKDCFLELAP 678
++R+ +P DP WT+ HVR W+ WA+ E+SL +D F M+G LC + K+ FL
Sbjct: 121 ERRVIVPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATT 180
Query: 679 DFVGDILWEHLEILQKEDVKPY 744
+ ++L HL L++ + Y
Sbjct: 181 LYNTEVLLSHLSYLRESSLLAY 202
>ref|NP_001230361.1| transcriptional regulator ERG isoform 6 [Homo sapiens].
Length = 317
Score = 63.2 bits (152), Expect = 4e-10
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +1
Query: 502 QQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF-CMNGAALCALGKDCFLELAP 678
++R+ +P DP W+ HVR W+ WAV E+ L V+ F ++G LC + KD F L P
Sbjct: 129 ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLTP 188
Query: 679 DFVGDILWEHLEILQK 726
+ DIL HL L++
Sbjct: 189 SYNADILLSHLHYLRE 204
>ref|NP_001230358.1| transcriptional regulator ERG isoform 5 [Homo sapiens].
Length = 363
Score = 63.2 bits (152), Expect = 4e-10
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +1
Query: 502 QQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF-CMNGAALCALGKDCFLELAP 678
++R+ +P DP W+ HVR W+ WAV E+ L V+ F ++G LC + KD F L P
Sbjct: 30 ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLTP 89
Query: 679 DFVGDILWEHLEILQK 726
+ DIL HL L++
Sbjct: 90 SYNADILLSHLHYLRE 105
>ref|NP_001129627.1| transcriptional regulator ERG isoform 4 [Homo sapiens].
Length = 387
Score = 63.2 bits (152), Expect = 4e-10
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +1
Query: 502 QQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF-CMNGAALCALGKDCFLELAP 678
++R+ +P DP W+ HVR W+ WAV E+ L V+ F ++G LC + KD F L P
Sbjct: 30 ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLTP 89
Query: 679 DFVGDILWEHLEILQK 726
+ DIL HL L++
Sbjct: 90 SYNADILLSHLHYLRE 105
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,700,553
Number of extensions: 1233666
Number of successful extensions: 4528
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 4475
Number of HSP's successfully gapped: 19
Length of query: 360
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 256
Effective length of database: 14,868,908
Effective search space: 3806440448
Effective search space used: 3806440448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009732
(1081 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 593 e-167
>Sscrofa_Chr09
|| Length = 153670197
Score = 593 bits (299), Expect = e-167
Identities = 299/299 (100%)
Strand = Plus / Plus
Query: 108 acttttcccgcaaagtgccaactacccgggagagagttccgggcgctcatctctgggcgc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61475404 acttttcccgcaaagtgccaactacccgggagagagttccgggcgctcatctctgggcgc 61475463
Query: 168 gggggaaagtcagcagtcagcgggaatttgagattttaggaaagaaagtccgatctcccg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61475464 gggggaaagtcagcagtcagcgggaatttgagattttaggaaagaaagtccgatctcccg 61475523
Query: 228 gtcccctttcccttgttaccgatccctattaaaaagaaaaacaacaggaataacagcaaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61475524 gtcccctttcccttgttaccgatccctattaaaaagaaaaacaacaggaataacagcaaa 61475583
Query: 288 cttgctctagtcttgtctgtaccccactcctggcaccatgaaggcggccgtcgatctcaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61475584 cttgctctagtcttgtctgtaccccactcctggcaccatgaaggcggccgtcgatctcaa 61475643
Query: 348 accgacactcacaatcatcaagacggaaaaagtggatctggagcttttcccctcccccg 406
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61475644 accgacactcacaatcatcaagacggaaaaagtggatctggagcttttcccctcccccg 61475702
Score = 456 bits (230), Expect = e-125
Identities = 242/246 (98%)
Strand = Plus / Plus
Query: 806 gctatggtattgagcatgcccagtgcgtccctccttcggagttctccgagcccagcttca 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61514963 gctatggtattgagcatgcccagtgcgtccctccttcggagttctccgagcccagcttca 61515022
Query: 866 tcactgagtcctaccagaccctccgtcccatcagctcggaggagctcctgtccctcaagt 925
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 61515023 tcaccgagtcctaccagaccctccatcccatcagctcggaggagctcctgtccctcaagt 61515082
Query: 926 atgagaacaactaccccccggtcatcctccgggaccctctgcagacggaccccttgcaga 985
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61515083 atgagaacgactaccccccggtcatcctccgggaccctctgcagacggaccccttgcaga 61515142
Query: 986 ccgactactttgccatcaaacaagaagttgtgacccccgaccacatgtgcatggggagga 1045
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 61515143 ccgactactttgccatcaaacaagaagttgtgacccccgacaacatgtgcatggggagga 61515202
Query: 1046 ccagtc 1051
||||||
Sbjct: 61515203 ccagtc 61515208
Score = 394 bits (199), Expect = e-107
Identities = 202/203 (99%)
Strand = Plus / Plus
Query: 525 agatccccggcagtggacagagacccatgttcgggactgggtgatgtgggctgtcaatga 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61510784 agatccccggcagtggacagagacccatgttcgggactgggtgatgtgggctgtcaatga 61510843
Query: 585 gttcagcctgaaaggtgtggatttccagaagttctgtatgaacggagcagccctctgtgc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61510844 gttcagcctgaaaggtgtggatttccagaagttctgtatgaacggagcagccctctgtgc 61510903
Query: 645 gctggggaaagactgctttctcgagctggctccagacttcgttggggacatcttgtggga 704
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 61510904 gctggggaaagactgctttctcgagctggctccagacttcgttggagacatcttgtggga 61510963
Query: 705 gcatctggagatcctgcaaaaag 727
|||||||||||||||||||||||
Sbjct: 61510964 gcatctggagatcctgcaaaaag 61510986
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 406 gatatggaatgtgcagatgtcccactcctaactccaagcagcaaagaaatgatgtctcaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61508895 gatatggaatgtgcagatgtcccactcctaactccaagcagcaaagaaatgatgtctcaa 61508954
Query: 466 gccttgaaagctacattcagtggtttttctaaagagcagcaacgcctgggaatcccaaaa 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61508955 gccttgaaagctacattcagtggtttttctaaagagcagcaacgcctgggaatcccaaaa 61509014
Query: 526 g 526
|
Sbjct: 61509015 g 61509015
Score = 153 bits (77), Expect = 2e-34
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 726 agaggatgtgaagccatatcaagttaatggagtcaaccccacctacccagagtcccgcta 785
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 61513709 agaggatgtgaagccatatcaagttaatggagtcaaccccacctacccggagtcccgcta 61513768
Query: 786 tacctcggattacttcattag 806
|||||||||||||||||||||
Sbjct: 61513769 tacctcggattacttcattag 61513789
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 gcgagggcgagggcgagcgcaggcggctgcccgccta 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 61475297 gcgagggcgagggcgagcgcaggcggctgcccgccta 61475333
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,179,204
Number of extensions: 218
Number of successful extensions: 218
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 6
Length of query: 1081
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1060
Effective length of database: 2,808,413,156
Effective search space: 2976917945360
Effective search space used: 2976917945360
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)