Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009752
(913 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193362.1| transmembrane emp24 domain-containing protei... 199 4e-51
Alignment gi|NP_001029984.1| transmembrane emp24 domain-containing protei... 176 3e-44
Alignment gi|XP_002689081.1| PREDICTED: transmembrane emp24 protein trans... 129 5e-30
Alignment gi|XP_586087.2| PREDICTED: transmembrane emp24 protein transpor... 129 5e-30
Alignment gi|NP_001035639.1| transmembrane emp24 domain-containing protei... 51 2e-06
>ref|NP_001193362.1| transmembrane emp24 domain-containing protein 4 [Bos taurus].
Length = 216
Score = 199 bits (505), Expect = 4e-51
Identities = 114/186 (61%), Positives = 118/186 (63%)
Frame = +3
Query: 354 GNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPEGKVGLPLAALRPWHRRIADRIRPSFTSS 533
GNYRTQMWDKQK +V LP H + D
Sbjct: 43 GNYRTQMWDKQK---------------------EVFLPSTPGLGMHVEVKDP-------- 73
Query: 534 LGGTEF*RRALALGEVRVEGEPLTAVLQVVLSRQYGSEGRFTFTSHTPGDHQICLHSNST 713
EG+ VVLSRQYGSEGRFTFTSHTPGDHQICLHSNST
Sbjct: 74 ------------------EGK-------VVLSRQYGSEGRFTFTSHTPGDHQICLHSNST 108
Query: 714 RMTLFAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY 893
RM LFAGGRLRVHLDIQVGEH NNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY
Sbjct: 109 RMALFAGGRLRVHLDIQVGEHTNNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY 168
Query: 894 REKRFR 911
RE+RFR
Sbjct: 169 REERFR 174
Score = 55.1 bits (131), Expect = 8e-08
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 109 YFHIGETEKRCFIEEIPDETMVIG 180
YFHIGETEKRCFIEEIPDETMVIG
Sbjct: 20 YFHIGETEKRCFIEEIPDETMVIG 43
>ref|NP_001029984.1| transmembrane emp24 domain-containing protein 9 precursor [Bos
taurus].
Length = 235
Score = 176 bits (446), Expect = 3e-44
Identities = 99/186 (53%), Positives = 116/186 (62%)
Frame = +3
Query: 354 GNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPEGKVGLPLAALRPWHRRIADRIRPSFTSS 533
GNYRTQ++DKQ+E + P+TPGLGM VEVKDPE KV L R+ R +FT
Sbjct: 62 GNYRTQLYDKQREEYQPATPGLGMFVEVKDPEDKVILA--------RQYGSEGRFTFT-- 111
Query: 534 LGGTEF*RRALALGEVRVEGEPLTAVLQVVLSRQYGSEGRFTFTSHTPGDHQICLHSNST 713
SHTPG+HQICLHSNST
Sbjct: 112 --------------------------------------------SHTPGEHQICLHSNST 127
Query: 714 RMTLFAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY 893
+ +LFAGG LRVHLDIQVGEHAN+Y EIAAKDKL+ELQLR RQL++QVEQIQKEQ+YQR+
Sbjct: 128 KFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRW 187
Query: 894 REKRFR 911
RE+RFR
Sbjct: 188 REERFR 193
Score = 53.9 bits (128), Expect = 2e-07
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +1
Query: 109 YFHIGETEKRCFIEEIPDETMVIG 180
YFHIGETEK+CFIEEIPDETMVIG
Sbjct: 39 YFHIGETEKKCFIEEIPDETMVIG 62
>ref|XP_002689081.1| PREDICTED: transmembrane emp24 protein transport domain containing
4-like [Bos taurus].
Length = 297
Score = 129 bits (323), Expect = 5e-30
Identities = 58/97 (59%), Positives = 77/97 (79%)
Frame = +3
Query: 621 VLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFAGGRLRVHLDIQVGEHANNYPEIA 800
+L+RQYG G FTFTS +PG+H++CLH S R LF G+L +HLD+Q+GEH N++ E+A
Sbjct: 159 LLARQYGPRGSFTFTSQSPGEHEVCLHLKSIRFALFYDGKLAIHLDMQLGEHTNDHTELA 218
Query: 801 AKDKLTELQLRARQLLDQVEQIQKEQDYQRYREKRFR 911
A DKLT L LR +QL++QVE+IQKEQ+YQR RE+ FR
Sbjct: 219 ANDKLTLLHLRIQQLVEQVEKIQKEQEYQRRREEHFR 255
>ref|XP_586087.2| PREDICTED: transmembrane emp24 protein transport domain containing
4-like [Bos taurus].
Length = 297
Score = 129 bits (323), Expect = 5e-30
Identities = 58/97 (59%), Positives = 77/97 (79%)
Frame = +3
Query: 621 VLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFAGGRLRVHLDIQVGEHANNYPEIA 800
+L+RQYG G FTFTS +PG+H++CLH S R LF G+L +HLD+Q+GEH N++ E+A
Sbjct: 159 LLARQYGPRGSFTFTSQSPGEHEVCLHLKSIRFALFYDGKLAIHLDMQLGEHTNDHTELA 218
Query: 801 AKDKLTELQLRARQLLDQVEQIQKEQDYQRYREKRFR 911
A DKLT L LR +QL++QVE+IQKEQ+YQR RE+ FR
Sbjct: 219 ANDKLTLLHLRIQQLVEQVEKIQKEQEYQRRREEHFR 255
>ref|NP_001035639.1| transmembrane emp24 domain-containing protein 10 precursor [Bos
taurus].
Length = 219
Score = 50.8 bits (120), Expect = 2e-06
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Frame = +3
Query: 618 VVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFAGGRLR---VHLDIQVGEHANNY 788
++ S++ ++G+F FT+ ++C S T GR+ V LD++ G A NY
Sbjct: 83 ILYSKEDATKGKFAFTTEDYDMFEVCFESKGT-------GRIPDQLVILDMKHGVEAKNY 135
Query: 789 PEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREKRFR 911
EIA +KL L++ R+L D E I + Y + RE+ R
Sbjct: 136 EEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMR 176
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,181,064
Number of extensions: 1107977
Number of successful extensions: 4492
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4482
Number of HSP's successfully gapped: 9
Length of query: 304
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 202
Effective length of database: 14,306,398
Effective search space: 2889892396
Effective search space used: 2889892396
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009752
(913 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855879.1| PREDICTED: similar to transmembrane emp24 prote... 203 2e-52
Alignment gi|XP_532721.2| PREDICTED: similar to transmembrane emp24 prote... 198 7e-51
Alignment gi|XP_538565.2| PREDICTED: similar to transmembrane emp24 prote... 176 3e-44
Alignment gi|XP_857976.1| PREDICTED: similar to transmembrane emp24 prote... 175 6e-44
Alignment gi|XP_531872.2| PREDICTED: similar to transmembrane emp24 prote... 138 6e-33
Alignment gi|NP_001003286.1| transmembrane emp24 domain-containing protei... 116 3e-26
Alignment gi|XP_854043.1| PREDICTED: similar to transmembrane trafficking... 51 2e-06
Alignment gi|XP_868152.1| PREDICTED: similar to transmembrane trafficking... 49 9e-06
>ref|XP_855879.1| PREDICTED: similar to transmembrane emp24 protein transport domain
containing 4 isoform 2 [Canis familiaris].
Length = 208
Score = 203 bits (516), Expect = 2e-52
Identities = 114/182 (62%), Positives = 117/182 (64%)
Frame = +3
Query: 366 TQMWDKQKEVFLPSTPGLGMHVEVKDPEGKVGLPLAALRPWHRRIADRIRPSFTSSLGGT 545
T MWDKQKEVFLPSTPGLGMHVEVKDPEGKV L R+ R +FTS
Sbjct: 39 TMMWDKQKEVFLPSTPGLGMHVEVKDPEGKVVL--------SRQYGSEGRFTFTS----- 85
Query: 546 EF*RRALALGEVRVEGEPLTAVLQVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTL 725
H PGDHQICLHSNSTRM L
Sbjct: 86 -----------------------------------------HMPGDHQICLHSNSTRMAL 104
Query: 726 FAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREKR 905
FAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYRE+R
Sbjct: 105 FAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREER 164
Query: 906 FR 911
FR
Sbjct: 165 FR 166
Score = 50.1 bits (118), Expect = 3e-06
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +1
Query: 109 YFHIGETEKRCFIEEIPDETMV 174
YFHIGETEKRCFIEEIPDETM+
Sbjct: 20 YFHIGETEKRCFIEEIPDETMM 41
>ref|XP_532721.2| PREDICTED: similar to transmembrane emp24 protein transport domain
containing 4 isoform 1 [Canis familiaris].
Length = 216
Score = 198 bits (503), Expect = 7e-51
Identities = 114/186 (61%), Positives = 118/186 (63%)
Frame = +3
Query: 354 GNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPEGKVGLPLAALRPWHRRIADRIRPSFTSS 533
GNYRTQMWDKQK +V LP H + D
Sbjct: 43 GNYRTQMWDKQK---------------------EVFLPSTPGLGMHVEVKDP-------- 73
Query: 534 LGGTEF*RRALALGEVRVEGEPLTAVLQVVLSRQYGSEGRFTFTSHTPGDHQICLHSNST 713
EG+ VVLSRQYGSEGRFTFTSH PGDHQICLHSNST
Sbjct: 74 ------------------EGK-------VVLSRQYGSEGRFTFTSHMPGDHQICLHSNST 108
Query: 714 RMTLFAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY 893
RM LFAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY
Sbjct: 109 RMALFAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY 168
Query: 894 REKRFR 911
RE+RFR
Sbjct: 169 REERFR 174
Score = 55.1 bits (131), Expect = 9e-08
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 109 YFHIGETEKRCFIEEIPDETMVIG 180
YFHIGETEKRCFIEEIPDETMVIG
Sbjct: 20 YFHIGETEKRCFIEEIPDETMVIG 43
>ref|XP_538565.2| PREDICTED: similar to transmembrane emp24 protein transport domain
containing 9 isoform 1 [Canis familiaris].
Length = 235
Score = 176 bits (446), Expect = 3e-44
Identities = 99/186 (53%), Positives = 116/186 (62%)
Frame = +3
Query: 354 GNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPEGKVGLPLAALRPWHRRIADRIRPSFTSS 533
GNYRTQ++DKQ+E + P+TPGLGM VEVKDPE KV L R+ R +FT
Sbjct: 62 GNYRTQLYDKQREEYQPATPGLGMFVEVKDPEDKVILA--------RQYGSEGRFTFT-- 111
Query: 534 LGGTEF*RRALALGEVRVEGEPLTAVLQVVLSRQYGSEGRFTFTSHTPGDHQICLHSNST 713
SHTPG+HQICLHSNST
Sbjct: 112 --------------------------------------------SHTPGEHQICLHSNST 127
Query: 714 RMTLFAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY 893
+ +LFAGG LRVHLDIQVGEHAN+Y EIAAKDKL+ELQLR RQL++QVEQIQKEQ+YQR+
Sbjct: 128 KFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRW 187
Query: 894 REKRFR 911
RE+RFR
Sbjct: 188 REERFR 193
Score = 53.9 bits (128), Expect = 2e-07
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +1
Query: 109 YFHIGETEKRCFIEEIPDETMVIG 180
YFHIGETEK+CFIEEIPDETMVIG
Sbjct: 39 YFHIGETEKKCFIEEIPDETMVIG 62
>ref|XP_857976.1| PREDICTED: similar to transmembrane emp24 protein transport domain
containing 9 isoform 2 [Canis familiaris].
Length = 151
Score = 175 bits (443), Expect = 6e-44
Identities = 82/99 (82%), Positives = 95/99 (95%)
Frame = +3
Query: 615 QVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFAGGRLRVHLDIQVGEHANNYPE 794
+V+L+RQYGSEGRFTFTSHTPG+HQICLHSNST+ +LFAGG LRVHLDIQVGEHAN+Y E
Sbjct: 11 KVILARQYGSEGRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVHLDIQVGEHANDYAE 70
Query: 795 IAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREKRFR 911
IAAKDKL+ELQLR RQL++QVEQIQKEQ+YQR+RE+RFR
Sbjct: 71 IAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFR 109
>ref|XP_531872.2| PREDICTED: similar to transmembrane emp24 protein transport domain
containing 9 [Canis familiaris].
Length = 217
Score = 138 bits (348), Expect = 6e-33
Identities = 63/97 (64%), Positives = 80/97 (82%)
Frame = +3
Query: 621 VLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFAGGRLRVHLDIQVGEHANNYPEIA 800
+L+RQYG +G FTFTS +PG+HQICLH S R LF G+L +HLD+Q+GEH N+Y E A
Sbjct: 79 LLARQYGPQGSFTFTSQSPGEHQICLHLESIRFALFYDGKLAIHLDMQLGEHTNDYVEFA 138
Query: 801 AKDKLTELQLRARQLLDQVEQIQKEQDYQRYREKRFR 911
AKDKLT+L LR +QL++QVE IQKEQ+YQR+RE+RFR
Sbjct: 139 AKDKLTQLHLRVQQLVEQVELIQKEQEYQRWREERFR 175
>ref|NP_001003286.1| transmembrane emp24 domain-containing protein 11 precursor [Canis
lupus familiaris].
Length = 215
Score = 116 bits (290), Expect = 3e-26
Identities = 53/99 (53%), Positives = 74/99 (74%)
Frame = +3
Query: 615 QVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFAGGRLRVHLDIQVGEHANNYPE 794
+V+LS+ YG +GRF FTSH+PG+H ICL SNSTR+ F G +LR+HL+I+VG+H +
Sbjct: 75 EVLLSKLYGPQGRFYFTSHSPGEHIICLESNSTRLVSFGGSKLRIHLEIRVGQHDLDAAI 134
Query: 795 IAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREKRFR 911
AKDK+ E+ + L++Q+EQI KEQ+YQR RE+ FR
Sbjct: 135 AQAKDKVNEVSFKLEHLIEQIEQIVKEQNYQRDREENFR 173
>ref|XP_854043.1| PREDICTED: similar to transmembrane trafficking protein isoform 1
[Canis familiaris].
Length = 219
Score = 50.8 bits (120), Expect = 2e-06
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Frame = +3
Query: 618 VVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFAGGRLR---VHLDIQVGEHANNY 788
++ S++ ++G+F FT+ ++C S T GR+ V LD++ G A NY
Sbjct: 83 ILYSKEDATKGKFAFTTEDYDMFEVCFESKGT-------GRIPDQLVILDMKHGVEAKNY 135
Query: 789 PEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREKRFR 911
EIA +KL L++ R+L D E I + Y + RE+ R
Sbjct: 136 EEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMR 176
>ref|XP_868152.1| PREDICTED: similar to transmembrane trafficking protein isoform 4
[Canis familiaris].
Length = 222
Score = 48.5 bits (114), Expect = 9e-06
Identities = 31/98 (31%), Positives = 51/98 (52%)
Frame = +3
Query: 618 VVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFAGGRLRVHLDIQVGEHANNYPEI 797
++ S++ ++G+F FT+ ++C S T +L V LD++ G A NY EI
Sbjct: 83 ILYSKEDATKGKFAFTTEDYDMFEVCFESKVPVGTGRIPDQL-VILDMKHGVEAKNYEEI 141
Query: 798 AAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREKRFR 911
A +KL L++ R+L D E I + Y + RE+ R
Sbjct: 142 AKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMR 179
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,684,553
Number of extensions: 1137198
Number of successful extensions: 5014
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4983
Number of HSP's successfully gapped: 14
Length of query: 304
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 202
Effective length of database: 15,474,232
Effective search space: 3125794864
Effective search space used: 3125794864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009752
(913 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360248.1| PREDICTED: transmembrane emp24 domain-contai... 205 2e-53
Alignment gi|XP_003134940.1| PREDICTED: transmembrane emp24 domain-contai... 202 2e-52
Alignment gi|XP_003123722.1| PREDICTED: transmembrane emp24 domain-contai... 176 2e-44
Alignment gi|XP_003123713.2| PREDICTED: transmembrane emp24 domain-contai... 130 8e-31
Alignment gi|XP_001926746.1| PREDICTED: transmembrane emp24 domain-contai... 51 1e-06
>ref|XP_003360248.1| PREDICTED: transmembrane emp24 domain-containing protein 4-like
[Sus scrofa].
Length = 168
Score = 205 bits (522), Expect = 2e-53
Identities = 115/180 (63%), Positives = 118/180 (65%)
Frame = +3
Query: 372 MWDKQKEVFLPSTPGLGMHVEVKDPEGKVGLPLAALRPWHRRIADRIRPSFTSSLGGTEF 551
MWDKQKEVFLPSTPGLGMHVEVKDPEGKV L R+ R +FT
Sbjct: 1 MWDKQKEVFLPSTPGLGMHVEVKDPEGKVVL--------SRQYGSEGRFTFT-------- 44
Query: 552 *RRALALGEVRVEGEPLTAVLQVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFA 731
SHTPGDHQICLHSNSTRMTLFA
Sbjct: 45 --------------------------------------SHTPGDHQICLHSNSTRMTLFA 66
Query: 732 GGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREKRFR 911
GGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYRE+RFR
Sbjct: 67 GGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFR 126
>ref|XP_003134940.1| PREDICTED: transmembrane emp24 domain-containing protein 4-like
[Sus scrofa].
Length = 424
Score = 202 bits (514), Expect = 2e-52
Identities = 116/186 (62%), Positives = 120/186 (64%)
Frame = +3
Query: 354 GNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPEGKVGLPLAALRPWHRRIADRIRPSFTSS 533
GNYRTQMWDKQK +V LP H + D
Sbjct: 251 GNYRTQMWDKQK---------------------EVFLPSTPGLGMHVEVKDP-------- 281
Query: 534 LGGTEF*RRALALGEVRVEGEPLTAVLQVVLSRQYGSEGRFTFTSHTPGDHQICLHSNST 713
EG+ VVLSRQYGSEGRFTFTSHTPGDHQICLHSNST
Sbjct: 282 ------------------EGK-------VVLSRQYGSEGRFTFTSHTPGDHQICLHSNST 316
Query: 714 RMTLFAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY 893
RMTLFAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY
Sbjct: 317 RMTLFAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY 376
Query: 894 REKRFR 911
RE+RFR
Sbjct: 377 REERFR 382
Score = 68.9 bits (167), Expect = 4e-12
Identities = 36/60 (60%), Positives = 36/60 (60%)
Frame = +1
Query: 1 LLSGRALAGVWVXXXXXXXXXXXXXXXXXXXXXXXXYFHIGETEKRCFIEEIPDETMVIG 180
LLSGRALAGVWV YFHIGETEKRCFIEEIPDETMVIG
Sbjct: 192 LLSGRALAGVWVGRRRAMGLPALLLLALCAAGARGLYFHIGETEKRCFIEEIPDETMVIG 251
>ref|XP_003123722.1| PREDICTED: transmembrane emp24 domain-containing protein 9-like
[Sus scrofa].
Length = 235
Score = 176 bits (446), Expect = 2e-44
Identities = 99/186 (53%), Positives = 116/186 (62%)
Frame = +3
Query: 354 GNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPEGKVGLPLAALRPWHRRIADRIRPSFTSS 533
GNYRTQ++DKQ+E + P+TPGLGM VEVKDPE KV L R+ R +FT
Sbjct: 62 GNYRTQLYDKQREEYQPATPGLGMFVEVKDPEDKVILA--------RQYGSEGRFTFT-- 111
Query: 534 LGGTEF*RRALALGEVRVEGEPLTAVLQVVLSRQYGSEGRFTFTSHTPGDHQICLHSNST 713
SHTPG+HQICLHSNST
Sbjct: 112 --------------------------------------------SHTPGEHQICLHSNST 127
Query: 714 RMTLFAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY 893
+ +LFAGG LRVHLDIQVGEHAN+Y EIAAKDKL+ELQLR RQL++QVEQIQKEQ+YQR+
Sbjct: 128 KFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRW 187
Query: 894 REKRFR 911
RE+RFR
Sbjct: 188 REERFR 193
Score = 53.9 bits (128), Expect = 1e-07
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +1
Query: 109 YFHIGETEKRCFIEEIPDETMVIG 180
YFHIGETEK+CFIEEIPDETMVIG
Sbjct: 39 YFHIGETEKKCFIEEIPDETMVIG 62
>ref|XP_003123713.2| PREDICTED: transmembrane emp24 domain-containing protein 9-like
[Sus scrofa].
Length = 342
Score = 130 bits (328), Expect = 8e-31
Identities = 60/97 (61%), Positives = 77/97 (79%)
Frame = +3
Query: 621 VLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFAGGRLRVHLDIQVGEHANNYPEIA 800
+LSRQYG G FTFTS +PG+HQICLH S R LF G+L +HLD+Q+GE N+Y E+
Sbjct: 204 LLSRQYGPRGSFTFTSQSPGEHQICLHLESIRFALFYDGKLAIHLDMQLGERTNDYTELV 263
Query: 801 AKDKLTELQLRARQLLDQVEQIQKEQDYQRYREKRFR 911
A DKL+ L LR +QL++QVE+IQKEQ+YQR+RE+RFR
Sbjct: 264 ANDKLSLLHLRIQQLVEQVEKIQKEQEYQRWREERFR 300
>ref|XP_001926746.1| PREDICTED: transmembrane emp24 domain-containing protein 10 [Sus
scrofa].
Length = 219
Score = 50.8 bits (120), Expect = 1e-06
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Frame = +3
Query: 618 VVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFAGGRLR---VHLDIQVGEHANNY 788
++ S++ ++G+F FT+ ++C S T GR+ V LD++ G A NY
Sbjct: 83 ILYSKEDATKGKFAFTTEDYDMFEVCFESKGT-------GRIPDQLVILDMKHGVEAKNY 135
Query: 789 PEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREKRFR 911
EIA +KL L++ R+L D E I + Y + RE+ R
Sbjct: 136 EEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMR 176
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,374,130
Number of extensions: 717755
Number of successful extensions: 2958
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2953
Number of HSP's successfully gapped: 10
Length of query: 304
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 205
Effective length of database: 8,879,129
Effective search space: 1820221445
Effective search space used: 1820221445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009752
(913 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598781.1| transmembrane emp24 domain-containing protein 4... 214 7e-56
Alignment gi|NP_080487.2| transmembrane emp24 domain-containing protein 9... 176 2e-44
Alignment gi|NP_080385.2| transmembrane emp24 domain-containing protein 1... 115 4e-26
Alignment gi|NP_081051.1| transmembrane emp24 domain-containing protein 1... 50 3e-06
Alignment gi|XP_001478849.1| PREDICTED: transmembrane emp24 domain-contai... 48 9e-06
Alignment gi|XP_003085908.1| PREDICTED: transmembrane emp24 domain-contai... 48 9e-06
>ref|NP_598781.1| transmembrane emp24 domain-containing protein 4 precursor [Mus
musculus].
Length = 227
Score = 214 bits (545), Expect = 7e-56
Identities = 118/186 (63%), Positives = 123/186 (66%)
Frame = +3
Query: 354 GNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPEGKVGLPLAALRPWHRRIADRIRPSFTSS 533
GNYRTQMWDKQKEVFLPSTPGLGMHVEVKDP+GKV L R+ R +FT
Sbjct: 54 GNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPDGKVVL--------SRQYGSEGRFTFT-- 103
Query: 534 LGGTEF*RRALALGEVRVEGEPLTAVLQVVLSRQYGSEGRFTFTSHTPGDHQICLHSNST 713
SHTPGDHQICLHSNST
Sbjct: 104 --------------------------------------------SHTPGDHQICLHSNST 119
Query: 714 RMTLFAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY 893
RM LFAGG+LRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY
Sbjct: 120 RMALFAGGKLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY 179
Query: 894 REKRFR 911
RE+RFR
Sbjct: 180 REERFR 185
Score = 55.1 bits (131), Expect = 8e-08
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 109 YFHIGETEKRCFIEEIPDETMVIG 180
YFHIGETEKRCFIEEIPDETMVIG
Sbjct: 31 YFHIGETEKRCFIEEIPDETMVIG 54
>ref|NP_080487.2| transmembrane emp24 domain-containing protein 9 precursor [Mus
musculus].
Length = 235
Score = 176 bits (446), Expect = 2e-44
Identities = 99/186 (53%), Positives = 116/186 (62%)
Frame = +3
Query: 354 GNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPEGKVGLPLAALRPWHRRIADRIRPSFTSS 533
GNYRTQ++DKQ+E + P+TPGLGM VEVKDPE KV L R+ R +FT
Sbjct: 62 GNYRTQLYDKQREEYQPATPGLGMFVEVKDPEDKVILA--------RQYGSEGRFTFT-- 111
Query: 534 LGGTEF*RRALALGEVRVEGEPLTAVLQVVLSRQYGSEGRFTFTSHTPGDHQICLHSNST 713
SHTPG+HQICLHSNST
Sbjct: 112 --------------------------------------------SHTPGEHQICLHSNST 127
Query: 714 RMTLFAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY 893
+ +LFAGG LRVHLDIQVGEHAN+Y EIAAKDKL+ELQLR RQL++QVEQIQKEQ+YQR+
Sbjct: 128 KFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRW 187
Query: 894 REKRFR 911
RE+RFR
Sbjct: 188 REERFR 193
Score = 53.9 bits (128), Expect = 2e-07
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +1
Query: 109 YFHIGETEKRCFIEEIPDETMVIG 180
YFHIGETEK+CFIEEIPDETMVIG
Sbjct: 39 YFHIGETEKKCFIEEIPDETMVIG 62
>ref|NP_080385.2| transmembrane emp24 domain-containing protein 11 precursor [Mus
musculus].
Length = 215
Score = 115 bits (289), Expect = 4e-26
Identities = 54/99 (54%), Positives = 74/99 (74%)
Frame = +3
Query: 615 QVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFAGGRLRVHLDIQVGEHANNYPE 794
+V+LS+ YG++G F FTSH+ G+H ICL SNST+ F G +LR+HLDI+VGEH +
Sbjct: 75 EVLLSKLYGAQGTFYFTSHSSGEHIICLESNSTQFVSFGGSKLRIHLDIRVGEHDLDAAI 134
Query: 795 IAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREKRFR 911
+ AKDK+ E+ + + L++QVEQI KEQDYQR RE+ FR
Sbjct: 135 VQAKDKVNEVTFKLQHLIEQVEQILKEQDYQRDREENFR 173
>ref|NP_081051.1| transmembrane emp24 domain-containing protein 10 precursor [Mus
musculus].
Length = 219
Score = 49.7 bits (117), Expect = 3e-06
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Frame = +3
Query: 618 VVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFAGGRLR---VHLDIQVGEHANNY 788
++ +++ ++G+F FT+ ++C S T GR+ V LD++ G A NY
Sbjct: 83 ILYAKEDATKGKFAFTTEDYDMFEVCFESKGT-------GRIPDQLVILDMKHGVEAKNY 135
Query: 789 PEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREKRFR 911
EIA +KL L++ R+L D E I + Y + RE+ R
Sbjct: 136 EEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMR 176
>ref|XP_001478849.1| PREDICTED: transmembrane emp24 domain-containing protein 10-like
[Mus musculus].
Length = 219
Score = 48.1 bits (113), Expect = 9e-06
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Frame = +3
Query: 618 VVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFAGGRLR---VHLDIQVGEHANNY 788
++ +++ ++G+F FT+ ++C S T G++ V LD++ G A NY
Sbjct: 83 ILYAKEDATKGKFAFTTEDYDMFEVCFESKGT-------GQIPDQLVILDMKHGVEAKNY 135
Query: 789 PEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREKRFR 911
EIA +KL L++ R+L D E I + Y + RE+ R
Sbjct: 136 EEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMR 176
>ref|XP_003085908.1| PREDICTED: transmembrane emp24 domain-containing protein 10-like
[Mus musculus].
Length = 219
Score = 48.1 bits (113), Expect = 9e-06
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Frame = +3
Query: 618 VVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFAGGRLR---VHLDIQVGEHANNY 788
++ +++ ++G+F FT+ ++C S T G++ V LD++ G A NY
Sbjct: 83 ILYAKEDATKGKFAFTTEDYDMFEVCFESKGT-------GQIPDQLVILDMKHGVEAKNY 135
Query: 789 PEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREKRFR 911
EIA +KL L++ R+L D E I + Y + RE+ R
Sbjct: 136 EEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMR 176
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,059,865
Number of extensions: 915982
Number of successful extensions: 3653
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3643
Number of HSP's successfully gapped: 10
Length of query: 304
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 203
Effective length of database: 12,583,923
Effective search space: 2554536369
Effective search space used: 2554536369
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009752
(913 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_872353.2| transmembrane emp24 domain-containing protein 4... 214 9e-56
Alignment gi|NP_059980.2| transmembrane emp24 domain-containing protein 9... 176 3e-44
Alignment gi|NP_006818.3| transmembrane emp24 domain-containing protein 1... 51 2e-06
>ref|NP_872353.2| transmembrane emp24 domain-containing protein 4 precursor [Homo
sapiens].
Length = 227
Score = 214 bits (545), Expect = 9e-56
Identities = 118/186 (63%), Positives = 123/186 (66%)
Frame = +3
Query: 354 GNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPEGKVGLPLAALRPWHRRIADRIRPSFTSS 533
GNYRTQMWDKQKEVFLPSTPGLGMHVEVKDP+GKV L R+ R +FT
Sbjct: 54 GNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPDGKVVL--------SRQYGSEGRFTFT-- 103
Query: 534 LGGTEF*RRALALGEVRVEGEPLTAVLQVVLSRQYGSEGRFTFTSHTPGDHQICLHSNST 713
SHTPGDHQICLHSNST
Sbjct: 104 --------------------------------------------SHTPGDHQICLHSNST 119
Query: 714 RMTLFAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY 893
RM LFAGG+LRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY
Sbjct: 120 RMALFAGGKLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY 179
Query: 894 REKRFR 911
RE+RFR
Sbjct: 180 REERFR 185
Score = 55.1 bits (131), Expect = 9e-08
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 109 YFHIGETEKRCFIEEIPDETMVIG 180
YFHIGETEKRCFIEEIPDETMVIG
Sbjct: 31 YFHIGETEKRCFIEEIPDETMVIG 54
>ref|NP_059980.2| transmembrane emp24 domain-containing protein 9 precursor [Homo
sapiens].
Length = 235
Score = 176 bits (446), Expect = 3e-44
Identities = 99/186 (53%), Positives = 116/186 (62%)
Frame = +3
Query: 354 GNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPEGKVGLPLAALRPWHRRIADRIRPSFTSS 533
GNYRTQ++DKQ+E + P+TPGLGM VEVKDPE KV L R+ R +FT
Sbjct: 62 GNYRTQLYDKQREEYQPATPGLGMFVEVKDPEDKVILA--------RQYGSEGRFTFT-- 111
Query: 534 LGGTEF*RRALALGEVRVEGEPLTAVLQVVLSRQYGSEGRFTFTSHTPGDHQICLHSNST 713
SHTPG+HQICLHSNST
Sbjct: 112 --------------------------------------------SHTPGEHQICLHSNST 127
Query: 714 RMTLFAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY 893
+ +LFAGG LRVHLDIQVGEHAN+Y EIAAKDKL+ELQLR RQL++QVEQIQKEQ+YQR+
Sbjct: 128 KFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRW 187
Query: 894 REKRFR 911
RE+RFR
Sbjct: 188 REERFR 193
Score = 53.9 bits (128), Expect = 2e-07
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +1
Query: 109 YFHIGETEKRCFIEEIPDETMVIG 180
YFHIGETEK+CFIEEIPDETMVIG
Sbjct: 39 YFHIGETEKKCFIEEIPDETMVIG 62
>ref|NP_006818.3| transmembrane emp24 domain-containing protein 10 precursor [Homo
sapiens].
Length = 219
Score = 50.8 bits (120), Expect = 2e-06
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Frame = +3
Query: 618 VVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFAGGRLR---VHLDIQVGEHANNY 788
++ S++ ++G+F FT+ ++C S T GR+ V LD++ G A NY
Sbjct: 83 ILYSKEDATKGKFAFTTEDYDMFEVCFESKGT-------GRIPDQLVILDMKHGVEAKNY 135
Query: 789 PEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREKRFR 911
EIA +KL L++ R+L D E I + Y + RE+ R
Sbjct: 136 EEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMR 176
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,935,617
Number of extensions: 1108106
Number of successful extensions: 4377
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4368
Number of HSP's successfully gapped: 7
Length of query: 304
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 202
Effective length of database: 14,934,836
Effective search space: 3016836872
Effective search space used: 3016836872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009752
(913 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 1261 0.0
>Sscrofa_Chr18
|| Length = 61220071
Score = 1261 bits (636), Expect = 0.0
Identities = 636/636 (100%)
Strand = Plus / Plus
Query: 108 ctacttccacatcggcgagaccgaaaagcgttgcttcatcgaggaaatccccgacgagac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55602929 ctacttccacatcggcgagaccgaaaagcgttgcttcatcgaggaaatccccgacgagac 55602988
Query: 168 catggtcatcggtcaggcggggcgagggtggactgggccctgtttgtccccacacccggt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55602989 catggtcatcggtcaggcggggcgagggtggactgggccctgtttgtccccacacccggt 55603048
Query: 228 tgggctccccactctagcactgccccgaaggcgccaggccttgcctggcgagtagtgccc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55603049 tgggctccccactctagcactgccccgaaggcgccaggccttgcctggcgagtagtgccc 55603108
Query: 288 cagcggagtgtggggtgtgggaacccggcggactaggcgggttgtgacagctctgtctgc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55603109 cagcggagtgtggggtgtgggaacccggcggactaggcgggttgtgacagctctgtctgc 55603168
Query: 348 tccgcagggaactaccgcacacagatgtgggataagcagaaggaggtcttcttgccctcg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55603169 tccgcagggaactaccgcacacagatgtgggataagcagaaggaggtcttcttgccctcg 55603228
Query: 408 acccccggcctgggcatgcacgtggaggtgaaggaccccgaaggcaaggtagggctaccg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55603229 acccccggcctgggcatgcacgtggaggtgaaggaccccgaaggcaaggtagggctaccg 55603288
Query: 468 ctggccgcgcttaggccgtggcacaggcgcattgcagaccgcatcaggccgtctttcacc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55603289 ctggccgcgcttaggccgtggcacaggcgcattgcagaccgcatcaggccgtctttcacc 55603348
Query: 528 agctctctggggggtacagagttctgaagacgtgcgcttgcacttggagaggtcagagta 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55603349 agctctctggggggtacagagttctgaagacgtgcgcttgcacttggagaggtcagagta 55603408
Query: 588 gaaggagaacctctcactgctgtgttgcaggtggtgctgtcccggcagtatggctcagag 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55603409 gaaggagaacctctcactgctgtgttgcaggtggtgctgtcccggcagtatggctcagag 55603468
Query: 648 ggccgcttcaccttcacttcccacactccgggtgaccatcagatctgcctgcactccaac 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55603469 ggccgcttcaccttcacttcccacactccgggtgaccatcagatctgcctgcactccaac 55603528
Query: 708 tctaccaggatgacactctttgctggtggcagactg 743
||||||||||||||||||||||||||||||||||||
Sbjct: 55603529 tctaccaggatgacactctttgctggtggcagactg 55603564
Score = 293 bits (148), Expect = 9e-77
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 743 gcgtgtgcacctagacatccaggttggagaacatgccaacaactaccctgagattgctgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55603773 gcgtgtgcacctagacatccaggttggagaacatgccaacaactaccctgagattgctgc 55603832
Query: 803 caaggataaactgaccgagttgcagctccgagcccgccagttgcttgatcaggtggaaca 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55603833 caaggataaactgaccgagttgcagctccgagcccgccagttgcttgatcaggtggaaca 55603892
Query: 863 gatccagaaggagcaggattaccaaagg 890
||||||||||||||||||||||||||||
Sbjct: 55603893 gatccagaaggagcaggattaccaaagg 55603920
Score = 69.9 bits (35), Expect = 2e-09
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1 ctgcttagcgggcgcgcgttggcaggtgtctgggt 35
|||||||||||||||||||||||||||||||||||
Sbjct: 55602822 ctgcttagcgggcgcgcgttggcaggtgtctgggt 55602856
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,216,381
Number of extensions: 122
Number of successful extensions: 122
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 3
Length of query: 913
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 892
Effective length of database: 2,808,413,156
Effective search space: 2505104535152
Effective search space used: 2505104535152
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)