Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009753
(909 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039751.1| estradiol 17-beta-dehydrogenase 11 [Bos taur... 443 e-125
Alignment gi|NP_001040081.1| 17-beta-hydroxysteroid dehydrogenase 13 [Bos... 343 9e-95
Alignment gi|NP_001093177.1| short-chain dehydrogenase/reductase family 1... 221 5e-58
Alignment gi|NP_001192862.1| epidermal retinol dehydrogenase 2 [Bos tauru... 214 6e-56
Alignment gi|XP_002692702.1| PREDICTED: short chain dehydrogenase/reducta... 214 6e-56
Alignment gi|NP_777159.1| retinol dehydrogenase 10 [Bos taurus]. 200 1e-51
Alignment gi|NP_776605.2| short-chain dehydrogenase/reductase 3 [Bos taur... 164 8e-41
Alignment gi|XP_002683810.1| PREDICTED: dehydrogenase/reductase (SDR fami... 128 6e-30
Alignment gi|NP_001030420.1| dehydrogenase/reductase SDR family member 7B... 100 2e-21
Alignment gi|NP_001039627.1| dehydrogenase/reductase SDR family member 7 ... 100 3e-21
>ref|NP_001039751.1| estradiol 17-beta-dehydrogenase 11 [Bos taurus].
Length = 316
Score = 443 bits (1140), Expect = e-125
Identities = 217/233 (93%), Positives = 226/233 (96%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSK 363
IPKKRKSVTGEIVLITGAGHG+GR TA+EFAKLKCKLVLWDINKHGLEETA ECKRLG+K
Sbjct: 43 IPKKRKSVTGEIVLITGAGHGIGRQTAYEFAKLKCKLVLWDINKHGLEETATECKRLGAK 102
Query: 364 AHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNIL 543
AH FVVDCS+REDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNIL
Sbjct: 103 AHTFVVDCSNREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNIL 162
Query: 544 AHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAAL 723
AHFWTTKAFLP MMKNNHGHIVTVASAAGH G+PFLLAYCSSKFAAVGFHKALTEEL+AL
Sbjct: 163 AHFWTTKAFLPEMMKNNHGHIVTVASAAGHTGVPFLLAYCSSKFAAVGFHKALTEELSAL 222
Query: 724 KRTGVKTTCLCPNFINTGFIKNPSTSLGPLLEPEEVVNRPINGILTEQKMIFI 882
KRTGVKTTCLCPNFINTGFIKNPSTSLGP LEPEEVVN+ I+GILTEQKMIF+
Sbjct: 223 KRTGVKTTCLCPNFINTGFIKNPSTSLGPTLEPEEVVNKLIDGILTEQKMIFV 275
>ref|NP_001040081.1| 17-beta-hydroxysteroid dehydrogenase 13 [Bos taurus].
Length = 300
Score = 343 bits (881), Expect = 9e-95
Identities = 160/233 (68%), Positives = 197/233 (84%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSK 363
IP++RKSV GEIVLITGAGHG+GR TA+EFAK K +LVLWDINKHG+EETA EC++LG+
Sbjct: 27 IPRRRKSVAGEIVLITGAGHGIGRQTAYEFAKRKSRLVLWDINKHGVEETAAECRKLGAT 86
Query: 364 AHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNIL 543
H FVVDCS+RE+IYSS +VK EVGDV+I+VNNAG +Y +DL +T+D +I KTFEVNIL
Sbjct: 87 THVFVVDCSNREEIYSSVNQVKKEVGDVTIVVNNAGAIYPADLLSTKDEEITKTFEVNIL 146
Query: 544 AHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAAL 723
HFW TKA LP+M++ NHGHIVTVAS GH IP+L+ YCSSKFAAVGFH+ALT EL AL
Sbjct: 147 GHFWITKALLPSMIRRNHGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTSELEAL 206
Query: 724 KRTGVKTTCLCPNFINTGFIKNPSTSLGPLLEPEEVVNRPINGILTEQKMIFI 882
+TG+KT+CLCP F+NTGF KNPST + P+LE ++VV I+GILT++KMIF+
Sbjct: 207 GKTGIKTSCLCPVFVNTGFTKNPSTRIWPVLETDKVVRSLIDGILTDKKMIFV 259
>ref|NP_001093177.1| short-chain dehydrogenase/reductase family 16C member 6 [Bos
taurus].
Length = 316
Score = 221 bits (564), Expect = 5e-58
Identities = 119/232 (51%), Positives = 154/232 (66%), Gaps = 4/232 (1%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKR-LGS 360
IPKK+K VTGEIVLITGA GLGRL A +FA L LVLWDIN+ G ET K +
Sbjct: 27 IPKKKKDVTGEIVLITGAASGLGRLLAIKFASLGAILVLWDINEEGNMETCRIIKEERDA 86
Query: 361 KAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNI 540
K A+ DCS+R+D+Y A +VK EVG+V+IL+NNAGVV + T D +E++F VN+
Sbjct: 87 KVFAYTCDCSNRQDVYRVADQVKKEVGNVTILINNAGVVTGREFLKTPDHMVERSFLVNV 146
Query: 541 LAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAA 720
++HFWT KAFLPAM++ NHGH+V ++S AG GI L YC+SKFAA GF ++L EL
Sbjct: 147 MSHFWTYKAFLPAMLEANHGHLVCISSFAGIVGINELSDYCASKFAAYGFAESLHFELKL 206
Query: 721 LKRTGVKTTCLCPNFINTGFIKNPSTS---LGPLLEPEEVVNRPINGILTEQ 867
L+++ + TT +CP FI TG + ST L P+L E +N IL EQ
Sbjct: 207 LQKSKINTTIVCPYFIKTGMFEGCSTKYPLLLPMLTQEYAAQSILNAILEEQ 258
>ref|NP_001192862.1| epidermal retinol dehydrogenase 2 [Bos taurus].
Length = 309
Score = 214 bits (546), Expect = 6e-56
Identities = 115/237 (48%), Positives = 153/237 (64%), Gaps = 4/237 (1%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGS- 360
IPK RK+V GEIVLITGAG GLGRL A +FA+L LVLWDI++ EET G+
Sbjct: 31 IPKPRKNVAGEIVLITGAGSGLGRLLALKFAQLGSVLVLWDISQESNEETCKMAVEAGAT 90
Query: 361 KAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNI 540
+ +A+ DCS +E+IY A +VK EVGD SIL+NNAG+V D IEK+ +VN
Sbjct: 91 RVYAYTCDCSRKEEIYRVANQVKKEVGDASILINNAGIVTGRKFMDCPDELIEKSLDVNF 150
Query: 541 LAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAA 720
+H WT KAFLPAM+ NN GH+V ++S+AG G+ L YC+SKFAA GF +++ E
Sbjct: 151 KSHIWTYKAFLPAMIANNRGHLVCISSSAGLIGMNGLADYCASKFAAYGFAESIFLESFT 210
Query: 721 LKRTGVKTTCLCPNFINTGFIKNPST---SLGPLLEPEEVVNRPINGILTEQKMIFI 882
+ G+KTT +CP FI TG +T SL P+LEPE V + ++ IL E +++
Sbjct: 211 KGQNGIKTTIVCPFFIKTGMFDGCTTGCPSLLPILEPEYAVRKIVDAILQENMYLYM 267
>ref|XP_002692702.1| PREDICTED: short chain dehydrogenase/reductase family 16C, member
5-like [Bos taurus].
Length = 309
Score = 214 bits (546), Expect = 6e-56
Identities = 115/237 (48%), Positives = 153/237 (64%), Gaps = 4/237 (1%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGS- 360
IPK RK+V GEIVLITGAG GLGRL A +FA+L LVLWDI++ EET G+
Sbjct: 31 IPKPRKNVAGEIVLITGAGSGLGRLLALKFAQLGSVLVLWDISQESNEETCKMAVEAGAT 90
Query: 361 KAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNI 540
+ +A+ DCS +E+IY A +VK EVGD SIL+NNAG+V D IEK+ +VN
Sbjct: 91 RVYAYTCDCSRKEEIYRVANQVKKEVGDASILINNAGIVTGRKFMDCPDELIEKSLDVNF 150
Query: 541 LAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAA 720
+H WT KAFLPAM+ NN GH+V ++S+AG G+ L YC+SKFAA GF +++ E
Sbjct: 151 KSHIWTYKAFLPAMIANNRGHLVCISSSAGLIGMNGLADYCASKFAAYGFAESIFLESFT 210
Query: 721 LKRTGVKTTCLCPNFINTGFIKNPST---SLGPLLEPEEVVNRPINGILTEQKMIFI 882
+ G+KTT +CP FI TG +T SL P+LEPE V + ++ IL E +++
Sbjct: 211 KGQNGIKTTIVCPFFIKTGMFDGCTTGCPSLLPILEPEYAVRKIVDAILQENMYLYM 267
>ref|NP_777159.1| retinol dehydrogenase 10 [Bos taurus].
Length = 341
Score = 200 bits (509), Expect = 1e-51
Identities = 113/258 (43%), Positives = 149/258 (57%), Gaps = 30/258 (11%)
Frame = +1
Query: 193 KRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSKAHA 372
K KSV G++ LITGAG GLGRL A EFA+ + LVLWDIN EETA + + A
Sbjct: 30 KEKSVAGQVCLITGAGSGLGRLFALEFARRRALLVLWDINTQSNEETAGMVRHIYRDLEA 89
Query: 373 -------------------------FVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVV 477
+ D RE++Y +A++V+ EVG+VS+LVNNAGVV
Sbjct: 90 ADAAALQAGNGEEEILPHCNLQVFTYTCDVGKRENVYLTAERVRKEVGEVSVLVNNAGVV 149
Query: 478 YTSDLFATQDPQIEKTFEVNILAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLA 657
L D IE+T VN AHFWTTKAFLP M++ NHGHIVTVAS+ G +
Sbjct: 150 SGHHLLECPDELIERTMMVNCHAHFWTTKAFLPTMLEINHGHIVTVASSLGLFSTAGVED 209
Query: 658 YCSSKFAAVGFHKALTEELAALKRTGVKTTCLCPNFINTGF-----IKNPSTSLGPLLEP 822
YC+SKF VGFH++L+ EL A ++ G+KTT +CP ++TG I+ P L+P
Sbjct: 210 YCASKFGVVGFHESLSHELKAAEKDGIKTTLVCPYLVDTGMFRGCRIRKEIEPFLPPLKP 269
Query: 823 EEVVNRPINGILTEQKMI 876
+ V + + ILT+Q MI
Sbjct: 270 DYCVKQAMKAILTDQPMI 287
>ref|NP_776605.2| short-chain dehydrogenase/reductase 3 [Bos taurus].
Length = 302
Score = 164 bits (416), Expect = 8e-41
Identities = 90/237 (37%), Positives = 139/237 (58%), Gaps = 4/237 (1%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKC-KLVLWDINKHGLEETADECKRLGS 360
+P K + ++ E VLITG G G+GR A EFA+ K+VLW + L+ET +E +++G+
Sbjct: 29 LPAKLRDLSRENVLITGGGRGIGRQLALEFAERGARKIVLWGRTEKCLKETTEEIRQMGT 88
Query: 361 KAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNI 540
+ H F+ D +RE++Y +AK V+ +VGD++ILVNNA VV+ L + D + K+ +N
Sbjct: 89 ECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINT 148
Query: 541 LAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAA 720
L FWTTKAFLP M++ +GHIV + S + IP + YC+SK +A F ++LT L
Sbjct: 149 LGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLT--LGL 206
Query: 721 LKRTGVKTTCLCPNFINTGFIKNPST---SLGPLLEPEEVVNRPINGILTEQKMIFI 882
L GV T + P +T + +L P L+PE V R + + Q ++ +
Sbjct: 207 LDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPETVARRTVEAVQLNQALLLL 263
>ref|XP_002683810.1| PREDICTED: dehydrogenase/reductase (SDR family) member 3-like,
partial [Bos taurus].
Length = 171
Score = 128 bits (322), Expect = 6e-30
Identities = 65/161 (40%), Positives = 100/161 (62%)
Frame = +1
Query: 292 LVLWDINKHGLEETADECKRLGSKAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAG 471
+VLW + L+ET +E +++G++ H F+ D +RE++Y +AK V+ +VGD++ILVNNA
Sbjct: 5 IVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAA 64
Query: 472 VVYTSDLFATQDPQIEKTFEVNILAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFL 651
VV+ L + D + K+ +N L FWTTKAFLP M++ +GHIV + S + IP
Sbjct: 65 VVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGA 124
Query: 652 LAYCSSKFAAVGFHKALTEELAALKRTGVKTTCLCPNFINT 774
+ YC+SK +A F ++LT L L GV T + P +T
Sbjct: 125 IDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTST 163
>ref|NP_001030420.1| dehydrogenase/reductase SDR family member 7B [Bos taurus].
Length = 325
Score = 100 bits (249), Expect = 2e-21
Identities = 67/212 (31%), Positives = 100/212 (47%), Gaps = 6/212 (2%)
Frame = +1
Query: 190 KKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADEC---KRLGS 360
+ R V +V+ITGA GLGR A F +LVL N LEE + E + G
Sbjct: 45 RMRAYVRNAVVVITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAASRAPGV 104
Query: 361 KAH---AFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFE 531
+ H D +D I +A ++ G V +L+NNAG+ Y + T ++ E
Sbjct: 105 QTHKPCTVTFDLADPGAIAGAASEILQCFGHVDVLINNAGISYRGAIVDTSPDVDKRVME 164
Query: 532 VNILAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEE 711
N TKA LPAM++ GH+V ++S G +PF AY +SK A F L E
Sbjct: 165 TNYFGPVALTKALLPAMIRRRQGHVVAISSIQGKISLPFRSAYAASKHATQAFFDCLRAE 224
Query: 712 LAALKRTGVKTTCLCPNFINTGFIKNPSTSLG 807
+++ ++ T + P +I+T N T+ G
Sbjct: 225 ---VEQHDIEVTVISPGYIHTNLSLNAVTADG 253
>ref|NP_001039627.1| dehydrogenase/reductase SDR family member 7 [Bos taurus].
Length = 339
Score = 99.8 bits (247), Expect = 3e-21
Identities = 66/202 (32%), Positives = 93/202 (46%), Gaps = 4/202 (1%)
Frame = +1
Query: 205 VTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSKAHAFVV- 381
+T +V +TGA G+G A++ +KL LVL H LE +C G+ ++
Sbjct: 48 LTDMVVWVTGASSGIGEELAYQLSKLGVSLVLSARRMHELERVKRKCLENGNLKEKDILI 107
Query: 382 ---DCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILAHF 552
D +DR + K V E G + ILVNN GV + T ++ E+N L
Sbjct: 108 LPLDLTDRSSHEMATKAVLQEFGRIDILVNNGGVSQRALCVDTSLDVFKELIELNYLGTV 167
Query: 553 WTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAALKRT 732
TK LP M++ G IVTV S G P YC+SK A GF L ELA
Sbjct: 168 SLTKCVLPHMIERKQGKIVTVNSMVGIIAAPLSTGYCASKHALRGFFNTLRSELATY--P 225
Query: 733 GVKTTCLCPNFINTGFIKNPST 798
G+ + +CP + + +KN T
Sbjct: 226 GITISNICPGPVQSNIVKNALT 247
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,645,695
Number of extensions: 693725
Number of successful extensions: 2161
Number of sequences better than 1.0e-05: 50
Number of HSP's gapped: 2105
Number of HSP's successfully gapped: 50
Length of query: 303
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 201
Effective length of database: 14,306,398
Effective search space: 2875585998
Effective search space used: 2875585998
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009753
(909 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (... 431 e-121
Alignment gi|XP_535646.2| PREDICTED: similar to alcohol dehydrogenase PAN... 340 1e-93
Alignment gi|XP_850000.1| PREDICTED: similar to hydroxysteroid (17-beta) ... 340 1e-93
Alignment gi|XP_860425.1| PREDICTED: similar to hydroxysteroid (17-beta) ... 269 2e-72
Alignment gi|XP_535080.2| PREDICTED: similar to epidermal retinal dehydro... 239 3e-63
Alignment gi|XP_860039.1| PREDICTED: similar to retinol dehydrogenase 10 ... 208 5e-54
Alignment gi|XP_544127.2| PREDICTED: similar to retinol dehydrogenase 10 ... 207 1e-53
Alignment gi|XP_860108.1| PREDICTED: similar to retinol dehydrogenase 10 ... 202 4e-52
Alignment gi|XP_849875.1| PREDICTED: similar to retinol dehydrogenase 10 ... 200 1e-51
Alignment gi|XP_544561.2| PREDICTED: similar to dehydrogenase/reductase (... 163 2e-40
>ref|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 8
[Canis familiaris].
Length = 300
Score = 431 bits (1107), Expect = e-121
Identities = 209/233 (89%), Positives = 224/233 (96%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSK 363
IPKKRKSVTGEIVLITGAGHG+GRLTA+EFAKLK KLVLWDINKHG+E+TA EC+RLG+K
Sbjct: 27 IPKKRKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGIEDTAAECRRLGAK 86
Query: 364 AHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNIL 543
HAFVVDCS+REDIY SA KVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVN+L
Sbjct: 87 VHAFVVDCSNREDIYGSATKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVL 146
Query: 544 AHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAAL 723
AHFWTTKAFLP MMKNNHGHIVTVASAAGH G+PFLLAYCSSKFAAVGFHKALTEELAAL
Sbjct: 147 AHFWTTKAFLPVMMKNNHGHIVTVASAAGHTGVPFLLAYCSSKFAAVGFHKALTEELAAL 206
Query: 724 KRTGVKTTCLCPNFINTGFIKNPSTSLGPLLEPEEVVNRPINGILTEQKMIFI 882
+RTGVKTTCLCPNFINTGFIKN ST+LGP+LEPEEVV++ +NGILTEQKMIFI
Sbjct: 207 ERTGVKTTCLCPNFINTGFIKNASTALGPILEPEEVVDKLLNGILTEQKMIFI 259
>ref|XP_535646.2| PREDICTED: similar to alcohol dehydrogenase PAN1B-like isoform 1
[Canis familiaris].
Length = 271
Score = 340 bits (871), Expect = 1e-93
Identities = 161/232 (69%), Positives = 191/232 (82%)
Frame = +1
Query: 187 PKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSKA 366
P+KRKSV GEIVLITGAGHG+GR TA+EFAK K +LVLWDINKHG+EETA EC++LG+
Sbjct: 28 PRKRKSVAGEIVLITGAGHGIGRWTAYEFAKQKSRLVLWDINKHGVEETAAECRKLGATV 87
Query: 367 HAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILA 546
H FVVDC +REDIY+S K+VK EVGDV+ILVNNAG VY +DL +T+D +I KTFE+NIL
Sbjct: 88 HTFVVDCGNREDIYNSVKQVKKEVGDVTILVNNAGTVYPADLLSTKDEEITKTFEINILG 147
Query: 547 HFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAALK 726
HFW TKA LP+M+K NHGHIVTVAS GH IP+L+ YCSSKFAAVGFH+ALT EL L
Sbjct: 148 HFWITKALLPSMIKRNHGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTLELQTLG 207
Query: 727 RTGVKTTCLCPNFINTGFIKNPSTSLGPLLEPEEVVNRPINGILTEQKMIFI 882
TG+KT+CLCP F+NTGF KNPST L P+LE + V I+GILT +KMIF+
Sbjct: 208 ITGIKTSCLCPVFVNTGFTKNPSTRLWPILETDTVARSLIDGILTNKKMIFV 259
>ref|XP_850000.1| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 13
isoform 2 [Canis familiaris].
Length = 300
Score = 340 bits (871), Expect = 1e-93
Identities = 161/232 (69%), Positives = 191/232 (82%)
Frame = +1
Query: 187 PKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSKA 366
P+KRKSV GEIVLITGAGHG+GR TA+EFAK K +LVLWDINKHG+EETA EC++LG+
Sbjct: 28 PRKRKSVAGEIVLITGAGHGIGRWTAYEFAKQKSRLVLWDINKHGVEETAAECRKLGATV 87
Query: 367 HAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILA 546
H FVVDC +REDIY+S K+VK EVGDV+ILVNNAG VY +DL +T+D +I KTFE+NIL
Sbjct: 88 HTFVVDCGNREDIYNSVKQVKKEVGDVTILVNNAGTVYPADLLSTKDEEITKTFEINILG 147
Query: 547 HFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAALK 726
HFW TKA LP+M+K NHGHIVTVAS GH IP+L+ YCSSKFAAVGFH+ALT EL L
Sbjct: 148 HFWITKALLPSMIKRNHGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTLELQTLG 207
Query: 727 RTGVKTTCLCPNFINTGFIKNPSTSLGPLLEPEEVVNRPINGILTEQKMIFI 882
TG+KT+CLCP F+NTGF KNPST L P+LE + V I+GILT +KMIF+
Sbjct: 208 ITGIKTSCLCPVFVNTGFTKNPSTRLWPILETDTVARSLIDGILTNKKMIFV 259
>ref|XP_860425.1| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 13
isoform 3 [Canis familiaris].
Length = 264
Score = 269 bits (688), Expect = 2e-72
Identities = 138/232 (59%), Positives = 161/232 (69%)
Frame = +1
Query: 187 PKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSKA 366
P+KRKSV GEIVLITGAGHG+GR TA+EFAK K +LVLWDINK
Sbjct: 28 PRKRKSVAGEIVLITGAGHGIGRWTAYEFAKQKSRLVLWDINK----------------- 70
Query: 367 HAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILA 546
VK EVGDV+ILVNNAG VY +DL +T+D +I KTFE+NIL
Sbjct: 71 -------------------VKKEVGDVTILVNNAGTVYPADLLSTKDEEITKTFEINILG 111
Query: 547 HFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAALK 726
HFW TKA LP+M+K NHGHIVTVAS GH IP+L+ YCSSKFAAVGFH+ALT EL L
Sbjct: 112 HFWITKALLPSMIKRNHGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTLELQTLG 171
Query: 727 RTGVKTTCLCPNFINTGFIKNPSTSLGPLLEPEEVVNRPINGILTEQKMIFI 882
TG+KT+CLCP F+NTGF KNPST L P+LE + V I+GILT +KMIF+
Sbjct: 172 ITGIKTSCLCPVFVNTGFTKNPSTRLWPILETDTVARSLIDGILTNKKMIFV 223
>ref|XP_535080.2| PREDICTED: similar to epidermal retinal dehydrogenase 2 [Canis
familiaris].
Length = 309
Score = 239 bits (609), Expect = 3e-63
Identities = 123/237 (51%), Positives = 162/237 (68%), Gaps = 4/237 (1%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGS- 360
IPK RK+V GEIVLITGAG GLGRL A FA+L LVLWDINK G E+T + G+
Sbjct: 31 IPKPRKNVAGEIVLITGAGSGLGRLLALRFARLGSVLVLWDINKEGNEDTCRMAREAGAT 90
Query: 361 KAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNI 540
+ +A+ DCS REDIY A++VK EVGD+SIL+NNAG+V + D +EK +VN
Sbjct: 91 RVYAYTCDCSQREDIYRVAEQVKKEVGDISILINNAGIVTGKNFLDCPDELMEKALDVNF 150
Query: 541 LAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAA 720
AH WT K+FLPAM+ NNHGH+V ++S+AG GI L YC+SKFAA+GF +++ E
Sbjct: 151 KAHLWTCKSFLPAMIANNHGHLVCISSSAGLVGISKLADYCASKFAALGFAESIFAETVV 210
Query: 721 LKRTGVKTTCLCPNFINTGFIKNPST---SLGPLLEPEEVVNRPINGILTEQKMIFI 882
K G+KTT +CP FINTG + ST L P+LEPE VV++ ++ IL E+ +++
Sbjct: 211 QKLNGIKTTIVCPFFINTGMFEGCSTVRPFLLPVLEPEYVVDKIVDAILQEKVYLYV 267
>ref|XP_860039.1| PREDICTED: similar to retinol dehydrogenase 10 isoform 3 [Canis
familiaris].
Length = 321
Score = 208 bits (530), Expect = 5e-54
Identities = 112/238 (47%), Positives = 149/238 (62%), Gaps = 10/238 (4%)
Frame = +1
Query: 193 KRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRL-----G 357
K KSV G++ LITGAG GLGRL A EFA+ + LVLWDIN EETA + +
Sbjct: 30 KEKSVAGQVCLITGAGSGLGRLFALEFARRRALLVLWDINTQSNEETAGMVRHIYRDLEA 89
Query: 358 SKAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVN 537
+ + D RE++Y +A++V+ EVG+VS+LVNNAGVV L D IE+T VN
Sbjct: 90 ADVFTYTCDVGKRENVYLTAERVRKEVGEVSVLVNNAGVVSGHHLLECPDELIERTMMVN 149
Query: 538 ILAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELA 717
AHFWTTKAFLP M++ NHGHIVTVAS+ G + YC+SKF VGFH++L+ EL
Sbjct: 150 CHAHFWTTKAFLPTMLEINHGHIVTVASSLGLFSTAGVEDYCASKFGVVGFHESLSHELK 209
Query: 718 ALKRTGVKTTCLCPNFINTGF-----IKNPSTSLGPLLEPEEVVNRPINGILTEQKMI 876
A ++ G+KTT +CP ++TG I+ P L+P+ V + + ILT+Q MI
Sbjct: 210 AAEKDGIKTTLVCPYLVDTGMFRGCRIRKEIEPFLPPLKPDYCVKQAMKAILTDQPMI 267
>ref|XP_544127.2| PREDICTED: similar to retinol dehydrogenase 10 isoform 1 [Canis
familiaris].
Length = 319
Score = 207 bits (527), Expect = 1e-53
Identities = 112/236 (47%), Positives = 148/236 (62%), Gaps = 8/236 (3%)
Frame = +1
Query: 193 KRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETA---DECKRLGSK 363
K KSV G++ LITGAG GLGRL A EFA+ + LVLWDIN EETA + +
Sbjct: 30 KEKSVAGQVCLITGAGSGLGRLFALEFARRRALLVLWDINTQSNEETAGMEEILPHCNLQ 89
Query: 364 AHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNIL 543
+ D RE++Y +A++V+ EVG+VS+LVNNAGVV L D IE+T VN
Sbjct: 90 VFTYTCDVGKRENVYLTAERVRKEVGEVSVLVNNAGVVSGHHLLECPDELIERTMMVNCH 149
Query: 544 AHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAAL 723
AHFWTTKAFLP M++ NHGHIVTVAS+ G + YC+SKF VGFH++L+ EL A
Sbjct: 150 AHFWTTKAFLPTMLEINHGHIVTVASSLGLFSTAGVEDYCASKFGVVGFHESLSHELKAA 209
Query: 724 KRTGVKTTCLCPNFINTGF-----IKNPSTSLGPLLEPEEVVNRPINGILTEQKMI 876
++ G+KTT +CP ++TG I+ P L+P+ V + + ILT+Q MI
Sbjct: 210 EKDGIKTTLVCPYLVDTGMFRGCRIRKEIEPFLPPLKPDYCVKQAMKAILTDQPMI 265
>ref|XP_860108.1| PREDICTED: similar to retinol dehydrogenase 10 isoform 4 [Canis
familiaris].
Length = 336
Score = 202 bits (514), Expect = 4e-52
Identities = 112/253 (44%), Positives = 149/253 (58%), Gaps = 25/253 (9%)
Frame = +1
Query: 193 KRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRL------ 354
K KSV G++ LITGAG GLGRL A EFA+ + LVLWDIN EETA + +
Sbjct: 30 KEKSVAGQVCLITGAGSGLGRLFALEFARRRALLVLWDINTQSNEETAGMVRHIYRDLEP 89
Query: 355 --------------GSKAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDL 492
+ + D RE++Y +A++V+ EVG+VS+LVNNAGVV L
Sbjct: 90 SPGGPDPRQILPHCNLQVFTYTCDVGKRENVYLTAERVRKEVGEVSVLVNNAGVVSGHHL 149
Query: 493 FATQDPQIEKTFEVNILAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSK 672
D IE+T VN AHFWTTKAFLP M++ NHGHIVTVAS+ G + YC+SK
Sbjct: 150 LECPDELIERTMMVNCHAHFWTTKAFLPTMLEINHGHIVTVASSLGLFSTAGVEDYCASK 209
Query: 673 FAAVGFHKALTEELAALKRTGVKTTCLCPNFINTGF-----IKNPSTSLGPLLEPEEVVN 837
F VGFH++L+ EL A ++ G+KTT +CP ++TG I+ P L+P+ V
Sbjct: 210 FGVVGFHESLSHELKAAEKDGIKTTLVCPYLVDTGMFRGCRIRKEIEPFLPPLKPDYCVK 269
Query: 838 RPINGILTEQKMI 876
+ + ILT+Q MI
Sbjct: 270 QAMKAILTDQPMI 282
>ref|XP_849875.1| PREDICTED: similar to retinol dehydrogenase 10 isoform 2 [Canis
familiaris].
Length = 341
Score = 200 bits (509), Expect = 1e-51
Identities = 113/258 (43%), Positives = 149/258 (57%), Gaps = 30/258 (11%)
Frame = +1
Query: 193 KRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSKAHA 372
K KSV G++ LITGAG GLGRL A EFA+ + LVLWDIN EETA + + A
Sbjct: 30 KEKSVAGQVCLITGAGSGLGRLFALEFARRRALLVLWDINTQSNEETAGMVRHIYRDLEA 89
Query: 373 -------------------------FVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVV 477
+ D RE++Y +A++V+ EVG+VS+LVNNAGVV
Sbjct: 90 ADAAALQAGNGEEEILPHCNLQVFTYTCDVGKRENVYLTAERVRKEVGEVSVLVNNAGVV 149
Query: 478 YTSDLFATQDPQIEKTFEVNILAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLA 657
L D IE+T VN AHFWTTKAFLP M++ NHGHIVTVAS+ G +
Sbjct: 150 SGHHLLECPDELIERTMMVNCHAHFWTTKAFLPTMLEINHGHIVTVASSLGLFSTAGVED 209
Query: 658 YCSSKFAAVGFHKALTEELAALKRTGVKTTCLCPNFINTGF-----IKNPSTSLGPLLEP 822
YC+SKF VGFH++L+ EL A ++ G+KTT +CP ++TG I+ P L+P
Sbjct: 210 YCASKFGVVGFHESLSHELKAAEKDGIKTTLVCPYLVDTGMFRGCRIRKEIEPFLPPLKP 269
Query: 823 EEVVNRPINGILTEQKMI 876
+ V + + ILT+Q MI
Sbjct: 270 DYCVKQAMKAILTDQPMI 287
>ref|XP_544561.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 3
[Canis familiaris].
Length = 302
Score = 163 bits (413), Expect = 2e-40
Identities = 90/237 (37%), Positives = 139/237 (58%), Gaps = 4/237 (1%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKC-KLVLWDINKHGLEETADECKRLGS 360
+P K + ++ E VLITG G G+GR A EFA+ K+VLW + L+ET +E +++G+
Sbjct: 29 LPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGT 88
Query: 361 KAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNI 540
+ H F+ D +RE++Y +AK V+ +VGD++ILVNNA VV+ L + D + K+ +N
Sbjct: 89 ECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINT 148
Query: 541 LAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAA 720
L FWTTKAFLP M++ +GHIV + S + IP + YC+SK +A F ++LT L
Sbjct: 149 LGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLT--LGL 206
Query: 721 LKRTGVKTTCLCPNFINTGFIKNPST---SLGPLLEPEEVVNRPINGILTEQKMIFI 882
L GV T + P +T + +L P L+PE V R + + Q ++ +
Sbjct: 207 LDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPETVARRTVEAVQLNQALLLL 263
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,929,833
Number of extensions: 708417
Number of successful extensions: 2091
Number of sequences better than 1.0e-05: 62
Number of HSP's gapped: 2038
Number of HSP's successfully gapped: 63
Length of query: 303
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 201
Effective length of database: 15,474,232
Effective search space: 3110320632
Effective search space used: 3110320632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009753
(909 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129386.2| PREDICTED: estradiol 17-beta-dehydrogenase 1... 412 e-115
Alignment gi|NP_001230551.1| hydroxysteroid (17-beta) dehydrogenase 13 [S... 340 6e-94
Alignment gi|NP_001182297.1| epidermal retinol dehydrogenase 2 [Sus scrof... 220 7e-58
Alignment gi|XP_003355103.1| PREDICTED: LOW QUALITY PROTEIN: short-chain ... 171 5e-43
Alignment gi|XP_003127650.1| PREDICTED: short-chain dehydrogenase/reducta... 138 4e-33
Alignment gi|XP_001928783.1| PREDICTED: dehydrogenase/reductase SDR famil... 90 2e-18
Alignment gi|XP_003131752.1| PREDICTED: dehydrogenase/reductase SDR famil... 85 6e-17
Alignment gi|NP_001177177.1| 15-hydroxyprostaglandin dehydrogenase [Sus s... 83 2e-16
Alignment gi|XP_001928117.2| PREDICTED: retinol dehydrogenase 10 [Sus scr... 83 2e-16
Alignment gi|XP_001927120.1| PREDICTED: carbonyl reductase family member ... 81 7e-16
>ref|XP_003129386.2| PREDICTED: estradiol 17-beta-dehydrogenase 11-like [Sus scrofa].
Length = 313
Score = 412 bits (1058), Expect = e-115
Identities = 203/203 (100%), Positives = 203/203 (100%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSK 363
IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSK
Sbjct: 27 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSK 86
Query: 364 AHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNIL 543
AHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNIL
Sbjct: 87 AHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNIL 146
Query: 544 AHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAAL 723
AHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAAL
Sbjct: 147 AHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAAL 206
Query: 724 KRTGVKTTCLCPNFINTGFIKNP 792
KRTGVKTTCLCPNFINTGFIKNP
Sbjct: 207 KRTGVKTTCLCPNFINTGFIKNP 229
>ref|NP_001230551.1| hydroxysteroid (17-beta) dehydrogenase 13 [Sus scrofa].
Length = 300
Score = 340 bits (872), Expect = 6e-94
Identities = 159/233 (68%), Positives = 193/233 (82%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSK 363
IP++RKSV GEIVL+TGAGHG+GR A+EFAK K +LVLWDINKHGLEETA ECK+LG+
Sbjct: 27 IPRRRKSVAGEIVLVTGAGHGIGRKIAYEFAKRKSRLVLWDINKHGLEETAAECKKLGAT 86
Query: 364 AHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNIL 543
HAFVVDCS+RE+IY+S +VK EVGD++I+VNNAG +Y +DL +T+D +I TFEVNIL
Sbjct: 87 THAFVVDCSNREEIYNSVNQVKKEVGDITIVVNNAGTIYPADLLSTKDEEITITFEVNIL 146
Query: 544 AHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAAL 723
HFW TKA LPAMM NHGH+VTVAS GH IP+L+ YCSSKFAAVGFH+ALT EL A+
Sbjct: 147 GHFWITKALLPAMMSRNHGHVVTVASLCGHGVIPYLIPYCSSKFAAVGFHRALTAELEAV 206
Query: 724 KRTGVKTTCLCPNFINTGFIKNPSTSLGPLLEPEEVVNRPINGILTEQKMIFI 882
+TG+KT+CLCP F+NTGF KNPST L P+LE +EV I+GILT +KMIF+
Sbjct: 207 GKTGIKTSCLCPVFVNTGFTKNPSTRLWPILETDEVARSLIDGILTNKKMIFV 259
>ref|NP_001182297.1| epidermal retinol dehydrogenase 2 [Sus scrofa].
Length = 309
Score = 220 bits (561), Expect = 7e-58
Identities = 118/237 (49%), Positives = 155/237 (65%), Gaps = 4/237 (1%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLG-S 360
IP RK V GEIVLITGAG GLGRL A +FA+L LVLWDIN+ EET + G +
Sbjct: 31 IPVPRKKVAGEIVLITGAGSGLGRLLALKFARLGSVLVLWDINQERNEETRKMVQEAGVA 90
Query: 361 KAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNI 540
A+A+ DCS RED+Y A +VK EVGDVSIL+NNAG+V D +EK+ +VN
Sbjct: 91 GAYAYTCDCSQREDVYRVASQVKKEVGDVSILINNAGIVTGRKFLDCPDELMEKSLDVNF 150
Query: 541 LAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAA 720
AH WT KAFLPAM+ N+HGH+V ++S+AG G+ L YC+SKFAA GF + + E A
Sbjct: 151 KAHLWTYKAFLPAMIANDHGHLVCISSSAGLIGVYGLADYCASKFAAFGFAETVFFETFA 210
Query: 721 LKRTGVKTTCLCPNFINTGFIKNPSTSLG---PLLEPEEVVNRPINGILTEQKMIFI 882
K+ G+KTT +CP FI T + ++ L P+LEPE V + ++ IL EQ +++
Sbjct: 211 SKQKGIKTTIVCPFFIKTQMFEGCTSRLSYVLPILEPEYAVEKIVDAILKEQLYLYM 267
>ref|XP_003355103.1| PREDICTED: LOW QUALITY PROTEIN: short-chain dehydrogenase/reductase
family 16C member 6-like [Sus scrofa].
Length = 373
Score = 171 bits (433), Expect = 5e-43
Identities = 111/281 (39%), Positives = 142/281 (50%), Gaps = 53/281 (18%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGS- 360
IPKK+K V+GEIVLI GA GLGRL A E A L LVLWDIN+ ET K G+
Sbjct: 27 IPKKKKDVSGEIVLIKGASSGLGRLMAIELASLGAILVLWDINEENNMETCRLVKEKGAV 86
Query: 361 KAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNI 540
KA A+ DCS R+++Y AK+VK +VGDV+IL+NN GV+ T D +E+TF N
Sbjct: 87 KAFAYKCDCSHRQEVYRVAKQVKRDVGDVTILINNTGVITGKQFLDTPDHMVERTFHTNA 146
Query: 541 LAHFWT-TKAFLPAMMKN------------------------------------------ 591
L+HFW K LP +
Sbjct: 147 LSHFWAPLKGCLPGPSSSLIDWLSNLFLTGSISLKLRRQRGAPLPSSGRPCSLKPPANDD 206
Query: 592 ----NHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAALKRTGVKTTCLCP 759
HGH+V + S AG + L Y +SKFAA G ++L EL+ +++ +KTT +CP
Sbjct: 207 SGSITHGHLVCITSIAGLLVVSGLSHYSASKFAAFGLAESLNLELSLQQKSKIKTTIVCP 266
Query: 760 NFINTGF-----IKNPSTSLGPLLEPEEVVNRPINGILTEQ 867
FINTG IK P L P+LE E V + N IL EQ
Sbjct: 267 YFINTGMFDGCTIKYP--FLWPMLEQEYVAQKLXNAILEEQ 305
>ref|XP_003127650.1| PREDICTED: short-chain dehydrogenase/reductase 3-like [Sus scrofa].
Length = 261
Score = 138 bits (348), Expect = 4e-33
Identities = 73/203 (35%), Positives = 117/203 (57%), Gaps = 3/203 (1%)
Frame = +1
Query: 283 KCKLVLWDINKHGLEETADECKRLGSKAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVN 462
+ +VLW + L+ET +E +++G++ H F+ D +RE++Y +AK V+ +VGD++ILVN
Sbjct: 22 EASIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVN 81
Query: 463 NAGVVYTSDLFATQDPQIEKTFEVNILAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGI 642
NA VV+ L + D + K+ +N L FWTTKAFLP M++ +GHIV + S + I
Sbjct: 82 NAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAI 141
Query: 643 PFLLAYCSSKFAAVGFHKALTEELAALKRTGVKTTCLCPNFINTGFIKNPST---SLGPL 813
P + YC+SK +A F ++LT L L GV T + P +T + +L P
Sbjct: 142 PGAIDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPP 199
Query: 814 LEPEEVVNRPINGILTEQKMIFI 882
L+PE V R + + Q ++ +
Sbjct: 200 LKPETVARRTVEAVQLNQTLLLL 222
>ref|XP_001928783.1| PREDICTED: dehydrogenase/reductase SDR family member 7 [Sus
scrofa].
Length = 339
Score = 90.1 bits (222), Expect = 2e-18
Identities = 64/202 (31%), Positives = 88/202 (43%), Gaps = 4/202 (1%)
Frame = +1
Query: 205 VTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKR----LGSKAHA 372
+T +V +TGA G+G ++ +KL LVL LE C G
Sbjct: 48 LTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILI 107
Query: 373 FVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILAHF 552
+D ++R + K V E G + ILVNN GV S T ++ EVN L
Sbjct: 108 LPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTV 167
Query: 553 WTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAALKRT 732
TK LP M++ G I+TV S G P YC+SK A GF L ELA
Sbjct: 168 SLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATY--P 225
Query: 733 GVKTTCLCPNFINTGFIKNPST 798
G+ + +CP + + +KN T
Sbjct: 226 GITVSNVCPGPVKSNIVKNALT 247
>ref|XP_003131752.1| PREDICTED: dehydrogenase/reductase SDR family member 11-like [Sus
scrofa].
Length = 330
Score = 84.7 bits (208), Expect = 6e-17
Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 11/205 (5%)
Frame = +1
Query: 211 GEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSKAHAFVVDC- 387
G + L+TGA G+G A + K+V +EE A ECK G C
Sbjct: 81 GRLALVTGASGGIGAAVARALVQHGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYKCD 140
Query: 388 -SDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILAHFWTTK 564
S+ EDI S ++++ V I +NNAG+ L + + F VN+LA T+
Sbjct: 141 LSNEEDILSMFSAIRSQHSGVDICINNAGLARPDSLLSGSTSGWKDMFNVNVLALSICTR 200
Query: 565 AFLPAM--MKNNHGHIVTVASAAGHAGIPFLLA--YCSSKFAAVGFHKALTEELAALKRT 732
+M K + GHI+ + S +GH +P +A Y ++K+A + L +EL +T
Sbjct: 201 EAYQSMRERKVDDGHIININSMSGHRVVPQSVAHFYSATKYAVTALTEGLRQELRE-AQT 259
Query: 733 GVKTTCLCPNFINTGFI-----KNP 792
++ TC+ P + T F KNP
Sbjct: 260 HIRATCISPGVVETQFAFKLHDKNP 284
>ref|NP_001177177.1| 15-hydroxyprostaglandin dehydrogenase [Sus scrofa].
Length = 266
Score = 83.2 bits (204), Expect = 2e-16
Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 10/205 (4%)
Frame = +1
Query: 205 VTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDIN-------KHGLEETADECKRLGSK 363
V G++ L+TGA G+GR +A K+ L D N K L+E + K L +
Sbjct: 3 VNGKVALVTGAAQGIGRASAEALLLKGAKVALVDWNFEAGVKCKAALDEQFEPQKTLFIQ 62
Query: 364 AHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNIL 543
D +D+ + + +KV G + ILVNNAGV + EKT ++N++
Sbjct: 63 C-----DVADQAQLRDTFRKVVDHFGRLDILVNNAGV--------NNEKNWEKTLQINLV 109
Query: 544 AHFWTTKAFLPAMMKNNHGH---IVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEEL 714
+ T L M K N G I+ ++S AG + YC+SK +GF ++
Sbjct: 110 SVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIIGFTRS-AAMA 168
Query: 715 AALKRTGVKTTCLCPNFINTGFIKN 789
A L +GV+ +CP F+NT +K+
Sbjct: 169 ANLMNSGVRLNAICPGFVNTPILKS 193
>ref|XP_001928117.2| PREDICTED: retinol dehydrogenase 10 [Sus scrofa].
Length = 257
Score = 82.8 bits (203), Expect = 2e-16
Identities = 54/129 (41%), Positives = 71/129 (55%), Gaps = 21/129 (16%)
Frame = +1
Query: 553 WTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAALKRT 732
+TTKAFLP M++ NHGHIVTVAS+ G + YC+SKF VGFH++L+ EL A ++
Sbjct: 75 FTTKAFLPTMLEINHGHIVTVASSLGLFSTAGVEDYCASKFGVVGFHESLSHELKAAEKD 134
Query: 733 GVKTT--CLCPNFINT------GFIKN----PSTSLG---------PLLEPEEVVNRPIN 849
G+KTT F T F KN P T G P L+P+ V + +
Sbjct: 135 GIKTTLRVYITRFTQTEGKETFRFTKNERKYPRTLKGGMKEIEPFLPPLKPDYCVKQAMK 194
Query: 850 GILTEQKMI 876
ILT+Q MI
Sbjct: 195 AILTDQPMI 203
>ref|XP_001927120.1| PREDICTED: carbonyl reductase family member 4-like [Sus scrofa].
Length = 237
Score = 81.3 bits (199), Expect = 7e-16
Identities = 54/191 (28%), Positives = 89/191 (46%)
Frame = +1
Query: 217 IVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSKAHAFVVDCSDR 396
+ + G G+GR A A+ +L + N G A + LG A D +
Sbjct: 4 VCAVFGGSRGIGRAVARLMAQRGYRLAIVARNLQGARAVAGD---LGGDHLALSCDVAKE 60
Query: 397 EDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILAHFWTTKAFLP 576
+D+ S+ ++++ +G V+ LVN AG+ + L T + + N+L T KA +
Sbjct: 61 QDVQSTFEEIEKNLGPVNFLVNAAGINRDNLLVRTSTEDMLCQLQTNLLGSMLTCKAAVK 120
Query: 577 AMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAALKRTGVKTTCLC 756
M+K G IV + S G G P Y +SK VGF +AL +E+A K ++ +
Sbjct: 121 TMIKQQGGSIVNIGSVVGLKGNPGQSVYSASKGGLVGFSRALAKEVAKKK---IRVNVVA 177
Query: 757 PNFINTGFIKN 789
P F++T K+
Sbjct: 178 PGFVHTDMTKD 188
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,025,513
Number of extensions: 440953
Number of successful extensions: 1380
Number of sequences better than 1.0e-05: 44
Number of HSP's gapped: 1343
Number of HSP's successfully gapped: 45
Length of query: 303
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 205
Effective length of database: 8,904,026
Effective search space: 1825325330
Effective search space used: 1825325330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009753
(909 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_444492.1| estradiol 17-beta-dehydrogenase 11 [Mus musculu... 402 e-112
Alignment gi|NP_001156958.1| 17-beta-hydroxysteroid dehydrogenase 13 isof... 333 8e-92
Alignment gi|NP_932147.2| 17-beta-hydroxysteroid dehydrogenase 13 isoform... 333 8e-92
Alignment gi|NP_871789.1| epidermal retinol dehydrogenase 2 [Mus musculus]. 229 2e-60
Alignment gi|NP_001074179.1| short-chain dehydrogenase/reductase family 1... 222 3e-58
Alignment gi|NP_598593.1| retinol dehydrogenase 10 [Mus musculus]. 200 1e-51
Alignment gi|NP_001165895.1| short-chain dehydrogenase/reductase 3 isofor... 163 1e-40
Alignment gi|NP_035433.1| short-chain dehydrogenase/reductase 3 isoform 1... 163 1e-40
Alignment gi|NP_001165583.1| dehydrogenase/reductase SDR family member 7B... 101 7e-22
Alignment gi|NP_663403.1| dehydrogenase/reductase SDR family member 7B is... 101 7e-22
>ref|NP_444492.1| estradiol 17-beta-dehydrogenase 11 [Mus musculus].
Length = 298
Score = 402 bits (1034), Expect = e-112
Identities = 193/233 (82%), Positives = 218/233 (93%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSK 363
IPKK+KSV GEIVLITGAGHG+GRLTA+EFAKL KLVLWDINK+G+EETA +C++LG++
Sbjct: 27 IPKKKKSVAGEIVLITGAGHGIGRLTAYEFAKLNTKLVLWDINKNGIEETAAKCRKLGAQ 86
Query: 364 AHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNIL 543
AH FVVDCS RE+IYS+AKKVK EVGDVSILVNNAGVVYT+DLFATQDPQIEKTFEVN+L
Sbjct: 87 AHPFVVDCSQREEIYSAAKKVKEEVGDVSILVNNAGVVYTADLFATQDPQIEKTFEVNVL 146
Query: 544 AHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAAL 723
AHFWTTKAFLP MMKNNHGHIVTVASAAGH +PFLLAYCSSKFAAVGFH+ALT+ELAAL
Sbjct: 147 AHFWTTKAFLPVMMKNNHGHIVTVASAAGHTVVPFLLAYCSSKFAAVGFHRALTDELAAL 206
Query: 724 KRTGVKTTCLCPNFINTGFIKNPSTSLGPLLEPEEVVNRPINGILTEQKMIFI 882
RTGV+T+CLCPNFINTGFIKNPST+LGP LEPEEVV ++GILTE++MIF+
Sbjct: 207 GRTGVRTSCLCPNFINTGFIKNPSTNLGPTLEPEEVVEHLMHGILTEKQMIFV 259
>ref|NP_001156958.1| 17-beta-hydroxysteroid dehydrogenase 13 isoform 1 [Mus musculus].
Length = 300
Score = 333 bits (855), Expect = 8e-92
Identities = 156/233 (66%), Positives = 191/233 (81%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSK 363
IP++RKSVTG+ VLITGAGHG+GRLTA+EFAK K +LVLWDINK G+EETAD+C++LG+
Sbjct: 27 IPRRRKSVTGQTVLITGAGHGIGRLTAYEFAKQKSRLVLWDINKRGVEETADKCRKLGAV 86
Query: 364 AHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNIL 543
H FVVDCS+R +IY+S +VK EVGDV I+VNNAG +Y +DL + +D +I KTFEVNIL
Sbjct: 87 VHVFVVDCSNRAEIYNSVDQVKREVGDVEIVVNNAGAIYPADLLSAKDEEITKTFEVNIL 146
Query: 544 AHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAAL 723
HFW KA LP+M++ N GHIVTVAS GH IP+L+ YCSSKFAAVGFH+ALT EL L
Sbjct: 147 GHFWIIKALLPSMLRRNSGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTAELDTL 206
Query: 724 KRTGVKTTCLCPNFINTGFIKNPSTSLGPLLEPEEVVNRPINGILTEQKMIFI 882
+TG++T+CLCP F+NTGF KNPST L P+LEPEEV INGILT +KMIF+
Sbjct: 207 GKTGIQTSCLCPVFVNTGFTKNPSTRLWPVLEPEEVARSLINGILTNKKMIFV 259
>ref|NP_932147.2| 17-beta-hydroxysteroid dehydrogenase 13 isoform 2 [Mus musculus].
Length = 304
Score = 333 bits (855), Expect = 8e-92
Identities = 156/233 (66%), Positives = 191/233 (81%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSK 363
IP++RKSVTG+ VLITGAGHG+GRLTA+EFAK K +LVLWDINK G+EETAD+C++LG+
Sbjct: 27 IPRRRKSVTGQTVLITGAGHGIGRLTAYEFAKQKSRLVLWDINKRGVEETADKCRKLGAV 86
Query: 364 AHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNIL 543
H FVVDCS+R +IY+S +VK EVGDV I+VNNAG +Y +DL + +D +I KTFEVNIL
Sbjct: 87 VHVFVVDCSNRAEIYNSVDQVKREVGDVEIVVNNAGAIYPADLLSAKDEEITKTFEVNIL 146
Query: 544 AHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAAL 723
HFW KA LP+M++ N GHIVTVAS GH IP+L+ YCSSKFAAVGFH+ALT EL L
Sbjct: 147 GHFWIIKALLPSMLRRNSGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTAELDTL 206
Query: 724 KRTGVKTTCLCPNFINTGFIKNPSTSLGPLLEPEEVVNRPINGILTEQKMIFI 882
+TG++T+CLCP F+NTGF KNPST L P+LEPEEV INGILT +KMIF+
Sbjct: 207 GKTGIQTSCLCPVFVNTGFTKNPSTRLWPVLEPEEVARSLINGILTNKKMIFV 259
>ref|NP_871789.1| epidermal retinol dehydrogenase 2 [Mus musculus].
Length = 309
Score = 229 bits (584), Expect = 2e-60
Identities = 119/237 (50%), Positives = 161/237 (67%), Gaps = 4/237 (1%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGS- 360
I K RK+V GEIVLITGAG GLGRL A +FA+L LVLWD+NK +ET + G+
Sbjct: 31 ISKPRKNVAGEIVLITGAGSGLGRLLALQFARLGAVLVLWDVNKEANDETHQLAREAGAA 90
Query: 361 KAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNI 540
+ HA+ DCS RE++Y A +VK EVGDVSIL+NNAG+V + D +EK+F+VN
Sbjct: 91 RVHAYTCDCSRREEVYRVADQVKKEVGDVSILINNAGIVTGRNFLDCPDDLMEKSFDVNF 150
Query: 541 LAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAA 720
AH W KAFLPAM+ NNHGH+V ++S+AG G+ L YC+SKFAA+GF +++ E A
Sbjct: 151 KAHLWMYKAFLPAMIANNHGHLVCISSSAGLIGVNGLSDYCASKFAALGFAESMFIETLA 210
Query: 721 LKRTGVKTTCLCPNFINTGFIKNPST---SLGPLLEPEEVVNRPINGILTEQKMIFI 882
K+ G+KTT +CP FI TG + +T +L P+L+PE V + I+ IL EQ +++
Sbjct: 211 KKQWGIKTTIVCPFFIKTGMFEGCTTKCPTLLPILDPEYAVRKIIDAILQEQLYLYM 267
>ref|NP_001074179.1| short-chain dehydrogenase/reductase family 16C member 6 [Mus
musculus].
Length = 316
Score = 222 bits (566), Expect = 3e-58
Identities = 124/237 (52%), Positives = 153/237 (64%), Gaps = 4/237 (1%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGS- 360
IPK++K V+GEIVLITGAG GLGRL A FA LVLWDIN+ G ET K+ G
Sbjct: 27 IPKRKKDVSGEIVLITGAGSGLGRLLAIHFASHGATLVLWDINQEGNMETCRLVKQKGDV 86
Query: 361 KAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNI 540
K A+ DCS R ++Y A +VK EVGDV+IL+NNAGVV T D +EK+F VN
Sbjct: 87 KVFAYKCDCSSRIEVYRVADQVKEEVGDVTILINNAGVVTGKSFLNTPDHLVEKSFLVNA 146
Query: 541 LAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAA 720
++HFWT KAFLPAM+K NHGH+V ++S AG GI L Y SSKFAA GF ++L EL
Sbjct: 147 ISHFWTCKAFLPAMVKANHGHLVCISSIAGLVGINGLSDYSSSKFAAFGFAESLFLELTM 206
Query: 721 LKRTGVKTTCLCPNFINTGFIKNPSTS---LGPLLEPEEVVNRPINGILTEQKMIFI 882
+ +T VK+T +CP FI TG + +T L PLLE E V + N IL EQ + I
Sbjct: 207 IMKTKVKSTIVCPYFIKTGMFEGCTTKYPLLLPLLEQEYVAQKIFNAILEEQVYLII 263
>ref|NP_598593.1| retinol dehydrogenase 10 [Mus musculus].
Length = 341
Score = 200 bits (508), Expect = 1e-51
Identities = 112/258 (43%), Positives = 149/258 (57%), Gaps = 30/258 (11%)
Frame = +1
Query: 193 KRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSKAHA 372
K KSV G++ LITGAG GLGRL A EFA+ + LVLWDIN EETA + + A
Sbjct: 30 KEKSVAGQVCLITGAGSGLGRLFALEFARRRALLVLWDINTQSNEETAGMVRHIYRDLEA 89
Query: 373 -------------------------FVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVV 477
+ D RE++Y +A++V+ EVG+VS+LVNNAGVV
Sbjct: 90 ADAAALQAGKGEEEILPPCNLQVFTYTCDVGKRENVYLTAERVRKEVGEVSVLVNNAGVV 149
Query: 478 YTSDLFATQDPQIEKTFEVNILAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLA 657
L D IE+T VN AHFWTTKAFLP M++ NHGHIVTVAS+ G +
Sbjct: 150 SGHHLLECPDELIERTMMVNCHAHFWTTKAFLPTMLEINHGHIVTVASSLGLFSTAGVED 209
Query: 658 YCSSKFAAVGFHKALTEELAALKRTGVKTTCLCPNFINTGF-----IKNPSTSLGPLLEP 822
YC+SKF VGFH++L+ EL A ++ G+KTT +CP ++TG I+ P L+P
Sbjct: 210 YCASKFGVVGFHESLSHELKAAEKDGIKTTLVCPYLVDTGMFRGCRIRKEIEPFLPPLKP 269
Query: 823 EEVVNRPINGILTEQKMI 876
+ V + + ILT+Q M+
Sbjct: 270 DYCVKQAMRAILTDQPMV 287
>ref|NP_001165895.1| short-chain dehydrogenase/reductase 3 isoform 2 [Mus musculus].
Length = 276
Score = 163 bits (413), Expect = 1e-40
Identities = 91/237 (38%), Positives = 139/237 (58%), Gaps = 4/237 (1%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKC-KLVLWDINKHGLEETADECKRLGS 360
+P K + ++ E VLITG G G+GR A EFA+ K+VLW + L+ET +E +++G+
Sbjct: 3 LPPKLRDLSRESVLITGGGRGIGRHLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGT 62
Query: 361 KAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNI 540
+ H F+ D +RE++Y AK V+ +VGD++ILVNNA VV+ L + D + K+ VN
Sbjct: 63 ECHYFICDVGNREEVYQMAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHVNT 122
Query: 541 LAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAA 720
L FWTTKAFLP M++ +GHIV + S + IP + YC+SK +A F ++LT L
Sbjct: 123 LGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLT--LGL 180
Query: 721 LKRTGVKTTCLCPNFINTGFIKNPST---SLGPLLEPEEVVNRPINGILTEQKMIFI 882
L GV T + P +T + +L P L+PE V R ++ + Q ++ +
Sbjct: 181 LDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPETVARRTVDAVQQNQALLLL 237
>ref|NP_035433.1| short-chain dehydrogenase/reductase 3 isoform 1 [Mus musculus].
Length = 302
Score = 163 bits (413), Expect = 1e-40
Identities = 91/237 (38%), Positives = 139/237 (58%), Gaps = 4/237 (1%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKC-KLVLWDINKHGLEETADECKRLGS 360
+P K + ++ E VLITG G G+GR A EFA+ K+VLW + L+ET +E +++G+
Sbjct: 29 LPPKLRDLSRESVLITGGGRGIGRHLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGT 88
Query: 361 KAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNI 540
+ H F+ D +RE++Y AK V+ +VGD++ILVNNA VV+ L + D + K+ VN
Sbjct: 89 ECHYFICDVGNREEVYQMAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHVNT 148
Query: 541 LAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAA 720
L FWTTKAFLP M++ +GHIV + S + IP + YC+SK +A F ++LT L
Sbjct: 149 LGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLT--LGL 206
Query: 721 LKRTGVKTTCLCPNFINTGFIKNPST---SLGPLLEPEEVVNRPINGILTEQKMIFI 882
L GV T + P +T + +L P L+PE V R ++ + Q ++ +
Sbjct: 207 LDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPETVARRTVDAVQQNQALLLL 263
>ref|NP_001165583.1| dehydrogenase/reductase SDR family member 7B isoform 1 [Mus
musculus].
Length = 314
Score = 101 bits (252), Expect = 7e-22
Identities = 70/201 (34%), Positives = 97/201 (48%), Gaps = 4/201 (1%)
Frame = +1
Query: 217 IVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADEC--KRLGSKAHAFVV--D 384
+V++TGA GLGR A F KLVL N LEE + E G FVV D
Sbjct: 45 VVVVTGATSGLGRECAKVFHAAGAKLVLCGRNVKALEELSRELAGSSQGQTHQPFVVTFD 104
Query: 385 CSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILAHFWTTK 564
+D I ++A ++ G V +L+NNAG+ Y + T K E+N TK
Sbjct: 105 LADPGTIAAAAAEILQCFGYVDVLINNAGISYRGTISDTIVDVDRKVMEINYFGPVALTK 164
Query: 565 AFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAALKRTGVKT 744
A LP+M++ GHIV ++S G IPF AY +SK A F L E ++ +K
Sbjct: 165 ALLPSMVERKQGHIVAISSIQGKISIPFRSAYSASKHATQAFFDCLRAE---MEEANIKV 221
Query: 745 TCLCPNFINTGFIKNPSTSLG 807
T + P +I+T N T+ G
Sbjct: 222 TVISPGYIHTNLSVNAVTADG 242
>ref|NP_663403.1| dehydrogenase/reductase SDR family member 7B isoform 2 [Mus
musculus].
Length = 323
Score = 101 bits (252), Expect = 7e-22
Identities = 70/201 (34%), Positives = 97/201 (48%), Gaps = 4/201 (1%)
Frame = +1
Query: 217 IVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADEC--KRLGSKAHAFVV--D 384
+V++TGA GLGR A F KLVL N LEE + E G FVV D
Sbjct: 54 VVVVTGATSGLGRECAKVFHAAGAKLVLCGRNVKALEELSRELAGSSQGQTHQPFVVTFD 113
Query: 385 CSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILAHFWTTK 564
+D I ++A ++ G V +L+NNAG+ Y + T K E+N TK
Sbjct: 114 LADPGTIAAAAAEILQCFGYVDVLINNAGISYRGTISDTIVDVDRKVMEINYFGPVALTK 173
Query: 565 AFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAALKRTGVKT 744
A LP+M++ GHIV ++S G IPF AY +SK A F L E ++ +K
Sbjct: 174 ALLPSMVERKQGHIVAISSIQGKISIPFRSAYSASKHATQAFFDCLRAE---MEEANIKV 230
Query: 745 TCLCPNFINTGFIKNPSTSLG 807
T + P +I+T N T+ G
Sbjct: 231 TVISPGYIHTNLSVNAVTADG 251
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,098,964
Number of extensions: 608499
Number of successful extensions: 1909
Number of sequences better than 1.0e-05: 58
Number of HSP's gapped: 1857
Number of HSP's successfully gapped: 58
Length of query: 303
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 202
Effective length of database: 12,583,923
Effective search space: 2541952446
Effective search space used: 2541952446
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009753
(909 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057329.2| estradiol 17-beta-dehydrogenase 11 [Homo sapien... 425 e-119
Alignment gi|NP_835236.2| 17-beta-hydroxysteroid dehydrogenase 13 isoform... 338 4e-93
Alignment gi|NP_001129702.1| 17-beta-hydroxysteroid dehydrogenase 13 isof... 273 2e-73
Alignment gi|NP_620419.2| epidermal retinol dehydrogenase 2 [Homo sapiens]. 232 4e-61
Alignment gi|NP_742034.1| retinol dehydrogenase 10 [Homo sapiens]. 200 1e-51
Alignment gi|NP_004744.2| short-chain dehydrogenase/reductase 3 [Homo sap... 163 2e-40
Alignment gi|NP_056325.2| dehydrogenase/reductase SDR family member 7B [H... 99 5e-21
Alignment gi|NP_057113.1| dehydrogenase/reductase SDR family member 7 pre... 97 2e-20
Alignment gi|NP_001193670.1| corticosteroid 11-beta-dehydrogenase isozyme... 87 3e-17
Alignment gi|NP_861420.1| corticosteroid 11-beta-dehydrogenase isozyme 1 ... 87 3e-17
>ref|NP_057329.2| estradiol 17-beta-dehydrogenase 11 [Homo sapiens].
Length = 300
Score = 425 bits (1092), Expect = e-119
Identities = 207/233 (88%), Positives = 221/233 (94%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSK 363
IPK+RKSVTGEIVLITGAGHG+GRLTA+EFAKLK KLVLWDINKHGLEETA +CK LG+K
Sbjct: 27 IPKRRKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAK 86
Query: 364 AHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNIL 543
H FVVDCS+REDIYSSAKKVKAE+GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVN+L
Sbjct: 87 VHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVL 146
Query: 544 AHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAAL 723
AHFWTTKAFLPAM KNNHGHIVTVASAAGH +PFLLAYCSSKFAAVGFHK LT+ELAAL
Sbjct: 147 AHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAAL 206
Query: 724 KRTGVKTTCLCPNFINTGFIKNPSTSLGPLLEPEEVVNRPINGILTEQKMIFI 882
+ TGVKTTCLCPNF+NTGFIKNPSTSLGP LEPEEVVNR ++GILTEQKMIFI
Sbjct: 207 QITGVKTTCLCPNFVNTGFIKNPSTSLGPTLEPEEVVNRLMHGILTEQKMIFI 259
>ref|NP_835236.2| 17-beta-hydroxysteroid dehydrogenase 13 isoform A [Homo sapiens].
Length = 300
Score = 338 bits (867), Expect = 4e-93
Identities = 161/233 (69%), Positives = 193/233 (82%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSK 363
IP++RKSV GEIVLITGAGHG+GR T +EFAK + LVLWDINK G+EETA EC++LG
Sbjct: 27 IPQRRKSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINKRGVEETAAECRKLGVT 86
Query: 364 AHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNIL 543
AHA+VVDCS+RE+IY S +VK EVGDV+I+VNNAG VY +DL +T+D +I KTFEVNIL
Sbjct: 87 AHAYVVDCSNREEIYRSLNQVKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNIL 146
Query: 544 AHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAAL 723
HFW TKA LP+MM+ NHGHIVTVAS GH GIP+L+ YCSSKFAAVGFH+ LT EL AL
Sbjct: 147 GHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSELQAL 206
Query: 724 KRTGVKTTCLCPNFINTGFIKNPSTSLGPLLEPEEVVNRPINGILTEQKMIFI 882
+TG+KT+CLCP F+NTGF KNPST L P+LE +EVV I+GILT +KMIF+
Sbjct: 207 GKTGIKTSCLCPVFVNTGFTKNPSTRLWPVLETDEVVRSLIDGILTNKKMIFV 259
>ref|NP_001129702.1| 17-beta-hydroxysteroid dehydrogenase 13 isoform B [Homo sapiens].
Length = 264
Score = 273 bits (698), Expect = 2e-73
Identities = 139/233 (59%), Positives = 164/233 (70%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSK 363
IP++RKSV GEIVLITGAGHG+GR T +EFAK + LVLWDINK
Sbjct: 27 IPQRRKSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINK---------------- 70
Query: 364 AHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNIL 543
VK EVGDV+I+VNNAG VY +DL +T+D +I KTFEVNIL
Sbjct: 71 --------------------VKKEVGDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNIL 110
Query: 544 AHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAAL 723
HFW TKA LP+MM+ NHGHIVTVAS GH GIP+L+ YCSSKFAAVGFH+ LT EL AL
Sbjct: 111 GHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSELQAL 170
Query: 724 KRTGVKTTCLCPNFINTGFIKNPSTSLGPLLEPEEVVNRPINGILTEQKMIFI 882
+TG+KT+CLCP F+NTGF KNPST L P+LE +EVV I+GILT +KMIF+
Sbjct: 171 GKTGIKTSCLCPVFVNTGFTKNPSTRLWPVLETDEVVRSLIDGILTNKKMIFV 223
>ref|NP_620419.2| epidermal retinol dehydrogenase 2 [Homo sapiens].
Length = 309
Score = 232 bits (591), Expect = 4e-61
Identities = 119/237 (50%), Positives = 160/237 (67%), Gaps = 4/237 (1%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGS- 360
+PK RK+V GEIVLITGAG GLGRL A +FA+L LVLWDINK G EET + G+
Sbjct: 31 LPKPRKNVAGEIVLITGAGSGLGRLLALQFARLGSVLVLWDINKEGNEETCKMAREAGAT 90
Query: 361 KAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNI 540
+ HA+ DCS +E +Y A +VK EVGDVSIL+NNAG+V D +EK+F+VN
Sbjct: 91 RVHAYTCDCSQKEGVYRVADQVKKEVGDVSILINNAGIVTGKKFLDCPDELMEKSFDVNF 150
Query: 541 LAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAA 720
AH WT KAFLPAM+ N+HGH+V ++S+AG +G+ L YC+SKFAA GF +++ E
Sbjct: 151 KAHLWTYKAFLPAMIANDHGHLVCISSSAGLSGVNGLADYCASKFAAFGFAESVFVETFV 210
Query: 721 LKRTGVKTTCLCPNFINTGFIKNPST---SLGPLLEPEEVVNRPINGILTEQKMIFI 882
K+ G+KTT +CP FI TG + +T SL P+LEP+ V + + IL E+ +++
Sbjct: 211 QKQKGIKTTIVCPFFIKTGMFEGCTTGCPSLLPILEPKYAVEKIVEAILQEKMYLYM 267
>ref|NP_742034.1| retinol dehydrogenase 10 [Homo sapiens].
Length = 341
Score = 200 bits (509), Expect = 1e-51
Identities = 113/258 (43%), Positives = 149/258 (57%), Gaps = 30/258 (11%)
Frame = +1
Query: 193 KRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSKAHA 372
K KSV G++ LITGAG GLGRL A EFA+ + LVLWDIN EETA + + A
Sbjct: 30 KEKSVAGQVCLITGAGSGLGRLFALEFARRRALLVLWDINTQSNEETAGMVRHIYRDLEA 89
Query: 373 -------------------------FVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVV 477
+ D RE++Y +A++V+ EVG+VS+LVNNAGVV
Sbjct: 90 ADAAALQAGNGEEEILPHCNLQVFTYTCDVGKRENVYLTAERVRKEVGEVSVLVNNAGVV 149
Query: 478 YTSDLFATQDPQIEKTFEVNILAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLA 657
L D IE+T VN AHFWTTKAFLP M++ NHGHIVTVAS+ G +
Sbjct: 150 SGHHLLECPDELIERTMMVNCHAHFWTTKAFLPTMLEINHGHIVTVASSLGLFSTAGVED 209
Query: 658 YCSSKFAAVGFHKALTEELAALKRTGVKTTCLCPNFINTGF-----IKNPSTSLGPLLEP 822
YC+SKF VGFH++L+ EL A ++ G+KTT +CP ++TG I+ P L+P
Sbjct: 210 YCASKFGVVGFHESLSHELKAAEKDGIKTTLVCPYLVDTGMFRGCRIRKEIEPFLPPLKP 269
Query: 823 EEVVNRPINGILTEQKMI 876
+ V + + ILT+Q MI
Sbjct: 270 DYCVKQAMKAILTDQPMI 287
>ref|NP_004744.2| short-chain dehydrogenase/reductase 3 [Homo sapiens].
Length = 302
Score = 163 bits (413), Expect = 2e-40
Identities = 90/237 (37%), Positives = 139/237 (58%), Gaps = 4/237 (1%)
Frame = +1
Query: 184 IPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKC-KLVLWDINKHGLEETADECKRLGS 360
+P K + ++ E VLITG G G+GR A EFA+ K+VLW + L+ET +E +++G+
Sbjct: 29 LPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGT 88
Query: 361 KAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNI 540
+ H F+ D +RE++Y +AK V+ +VGD++ILVNNA VV+ L + D + K+ +N
Sbjct: 89 ECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINT 148
Query: 541 LAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAA 720
L FWTTKAFLP M++ +GHIV + S + IP + YC+SK +A F ++LT L
Sbjct: 149 LGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLT--LGL 206
Query: 721 LKRTGVKTTCLCPNFINTGFIKNPST---SLGPLLEPEEVVNRPINGILTEQKMIFI 882
L GV T + P +T + +L P L+PE V R + + Q ++ +
Sbjct: 207 LDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPETVARRTVEAVQLNQALLLL 263
>ref|NP_056325.2| dehydrogenase/reductase SDR family member 7B [Homo sapiens].
Length = 325
Score = 99.0 bits (245), Expect = 5e-21
Identities = 69/203 (33%), Positives = 99/203 (48%), Gaps = 6/203 (2%)
Frame = +1
Query: 217 IVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEE-----TADECKRLGS-KAHAFV 378
+V+ITGA GLG+ A F KLVL N LEE TA ++ + K +
Sbjct: 54 VVVITGATSGLGKECAKVFYAAGAKLVLCGRNGGALEELIRELTASHATKVQTHKPYLVT 113
Query: 379 VDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILAHFWT 558
D +D I ++A ++ G V ILVNNAG+ Y + T ++ E N
Sbjct: 114 FDLTDSGAIVAAAAEILQCFGYVDILVNNAGISYRGTIMDTTVDVDKRVMETNYFGPVAL 173
Query: 559 TKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAALKRTGV 738
TKA LP+M+K GHIV ++S G IPF AY +SK A F L E +++ +
Sbjct: 174 TKALLPSMIKRRQGHIVAISSIQGKMSIPFRSAYAASKHATQAFFDCLRAE---MEQYEI 230
Query: 739 KTTCLCPNFINTGFIKNPSTSLG 807
+ T + P +I+T N T+ G
Sbjct: 231 EVTVISPGYIHTNLSVNAITADG 253
>ref|NP_057113.1| dehydrogenase/reductase SDR family member 7 precursor [Homo
sapiens].
Length = 339
Score = 97.1 bits (240), Expect = 2e-20
Identities = 64/199 (32%), Positives = 92/199 (46%), Gaps = 4/199 (2%)
Frame = +1
Query: 205 VTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSKAHAFVV- 381
+T +V +TGA G+G A++ +KL LVL H LE C G+ ++
Sbjct: 48 LTDMVVWVTGASSGIGEELAYQLSKLGVSLVLSARRVHELERVKRRCLENGNLKEKDILV 107
Query: 382 ---DCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILAHF 552
D +D ++ K V E G + ILVNN G+ S T K E+N L
Sbjct: 108 LPLDLTDTGSHEAATKAVLQEFGRIDILVNNGGMSQRSLCMDTSLDVYRKLIELNYLGTV 167
Query: 553 WTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAALKRT 732
TK LP M++ G IVTV S G +P + YC+SK A GF L ELA
Sbjct: 168 SLTKCVLPHMIERKQGKIVTVNSILGIISVPLSIGYCASKHALRGFFNGLRTELATY--P 225
Query: 733 GVKTTCLCPNFINTGFIKN 789
G+ + +CP + + ++N
Sbjct: 226 GIIVSNICPGPVQSNIVEN 244
>ref|NP_001193670.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Homo sapiens].
Length = 292
Score = 86.7 bits (213), Expect = 3e-17
Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 4/192 (2%)
Frame = +1
Query: 211 GEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSKAHAFVV--- 381
G+ V++TGA G+GR A+ AK+ +V+ +K L++ C LG+ + ++
Sbjct: 34 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTM 93
Query: 382 -DCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILAHFWT 558
D + E + A K+ +G + +L+ N + +LF + K+ EVN L++
Sbjct: 94 EDMTFAEQFVAQAGKL---MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVL 150
Query: 559 TKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAALKRTGV 738
T A LP M+K ++G IV V+S AG P + AY +SKFA GF ++ +E ++ R V
Sbjct: 151 TVAALP-MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEY-SVSRVNV 208
Query: 739 KTTCLCPNFINT 774
T I+T
Sbjct: 209 SITLCVLGLIDT 220
>ref|NP_861420.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Homo sapiens].
Length = 292
Score = 86.7 bits (213), Expect = 3e-17
Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 4/192 (2%)
Frame = +1
Query: 211 GEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSKAHAFVV--- 381
G+ V++TGA G+GR A+ AK+ +V+ +K L++ C LG+ + ++
Sbjct: 34 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTM 93
Query: 382 -DCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILAHFWT 558
D + E + A K+ +G + +L+ N + +LF + K+ EVN L++
Sbjct: 94 EDMTFAEQFVAQAGKL---MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVL 150
Query: 559 TKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAALKRTGV 738
T A LP M+K ++G IV V+S AG P + AY +SKFA GF ++ +E ++ R V
Sbjct: 151 TVAALP-MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEY-SVSRVNV 208
Query: 739 KTTCLCPNFINT 774
T I+T
Sbjct: 209 SITLCVLGLIDT 220
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,499,944
Number of extensions: 708876
Number of successful extensions: 2239
Number of sequences better than 1.0e-05: 62
Number of HSP's gapped: 2183
Number of HSP's successfully gapped: 63
Length of query: 303
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 201
Effective length of database: 14,934,836
Effective search space: 3001902036
Effective search space used: 3001902036
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009753
(909 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 615 e-173
>Sscrofa_Chr08
|| Length = 148491826
Score = 615 bits (310), Expect = e-173
Identities = 313/314 (99%)
Strand = Plus / Plus
Query: 2 ccctgttcctgcttttattttctttgatgtctgacgaaacagctcccgctggagacaatt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140714792 ccctgttcctgcttttattttctttgatgtctgacgaaacagctcccgctggagacaatt 140714851
Query: 62 tagagtgactggtaaaagaaaataagctcacagcaacaaaaagaatgcgattctttctgg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140714852 tagagtgactggtaaaagaaaataagctcacagcaacaaaaagaatgcgattctttctgg 140714911
Query: 122 acctcctcctgcttctgcccttactgctcatcttcaccttagagtctctcctgaagcttt 181
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140714912 acgtcctcctgcttctgcccttactgctcatcttcaccttagagtctctcctgaagcttt 140714971
Query: 182 ttattcctaagaagagaaaatcagtcaccggagaaatcgtcctgattactggagctgggc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140714972 ttattcctaagaagagaaaatcagtcaccggagaaatcgtcctgattactggagctgggc 140715031
Query: 242 atggacttgggaggctgactgcctttgaatttgccaaacttaaatgcaaactggtcctgt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140715032 atggacttgggaggctgactgcctttgaatttgccaaacttaaatgcaaactggtcctgt 140715091
Query: 302 gggatataaataag 315
||||||||||||||
Sbjct: 140715092 gggatataaataag 140715105
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 662 gttcaagcaagtttgctgctgttggatttcataaagctttgactgaagaactggctgcct 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140740245 gttcaagcaagtttgctgctgttggatttcataaagctttgactgaagaactggctgcct 140740304
Query: 722 taaaaagaactggagtcaaaacaacatgtctctgccctaatttcataaacactggcttca 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140740305 taaaaagaactggagtcaaaacaacatgtctctgccctaatttcataaacactggcttca 140740364
Query: 782 tcaaaaacccaagtaccag 800
|||||||||||||||||||
Sbjct: 140740365 tcaaaaacccaagtaccag 140740383
Score = 268 bits (135), Expect = 5e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 421 aaggtgaaggcagaagttggagacgttagtattttagtaaataatgctggtgtagtctac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140732911 aaggtgaaggcagaagttggagacgttagtattttagtaaataatgctggtgtagtctac 140732970
Query: 481 acatcagatttgtttgctacacaagaccctcagattgaaaagacttttgaagttaatata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140732971 acatcagatttgtttgctacacaagaccctcagattgaaaagacttttgaagttaatata 140733030
Query: 541 cttgcacatttctgg 555
|||||||||||||||
Sbjct: 140733031 cttgcacatttctgg 140733045
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 314 agcatggacttgaggaaacagctgatgaatgcaagcgactgggctcaaaggcccatgcct 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140722725 agcatggacttgaggaaacagctgatgaatgcaagcgactgggctcaaaggcccatgcct 140722784
Query: 374 tcgtggtagactgcagtgaccgcgaagatatctacagctctgcgaagaaggtgaagg 430
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140722785 tcgtggtagactgcagtgaccgcgaagatatctacagctctgcgaagaaggtgaagg 140722841
Score = 220 bits (111), Expect = 1e-54
Identities = 114/115 (99%)
Strand = Plus / Plus
Query: 548 atttctggactacaaaggcatttcttccagcgatgatgaagaataatcatggccatattg 607
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140736662 atttctagactacaaaggcatttcttccagcgatgatgaagaataatcatggccatattg 140736721
Query: 608 tcactgtggcttcagcagctgggcatgctgggatccccttcttactggcttattg 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140736722 tcactgtggcttcagcagctgggcatgctgggatccccttcttactggcttattg 140736776
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,942,096
Number of extensions: 222
Number of successful extensions: 222
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 5
Length of query: 909
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 888
Effective length of database: 2,808,413,156
Effective search space: 2493870882528
Effective search space used: 2493870882528
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)