Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009786
(1090 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092466.1| nucleolar protein 14 [Bos taurus]. 592 e-169
>ref|NP_001092466.1| nucleolar protein 14 [Bos taurus].
Length = 869
Score = 592 bits (1527), Expect = e-169
Identities = 290/363 (79%), Positives = 319/363 (87%)
Frame = +2
Query: 2 RKCNHPSLAVGNKAKLEKLFGFLLEYVGDLATKDPPDLGVIDKLVVQLYNLCQMFPESAS 181
+KCNHPSLAVGNKAKLEKLFGFLLEY+GDLA DPPDLGVIDKLVV LY+LCQMFPESAS
Sbjct: 467 QKCNHPSLAVGNKAKLEKLFGFLLEYIGDLAVSDPPDLGVIDKLVVPLYDLCQMFPESAS 526
Query: 182 YSMKFVLRDAMHEMEGMVETTGRAAFPGLDVLVYLKVAGLLFPTSDFWHPVVTPALLCLS 361
++KFVLRDAMHEMEG VETTGRAAFPGLDVL+YLK+AG+LFPTSDFWHPV+TPALLCLS
Sbjct: 527 DAVKFVLRDAMHEMEGTVETTGRAAFPGLDVLIYLKIAGMLFPTSDFWHPVITPALLCLS 586
Query: 362 QLLTKCPVLSLPDVVKGLFVCCLFLDYVSLSQRFIPELLNFLLGILYIAAPGRPGQGYSL 541
QLLTKCPV SL D VKGLFVCC+FLDYV+LSQRFIPEL+NFL GIL++A P + QGY+L
Sbjct: 587 QLLTKCPVRSLQDAVKGLFVCCVFLDYVALSQRFIPELINFLAGILHMATPNKQSQGYTL 646
Query: 542 VPPFRALGKNAGLLWVSDAEDVATWQRRSLSLRWAGSWKAQTRTEANHTRLSCLAVCLAL 721
V PFRALGKN+ LL VSD ED+ATWQRRSL L+WAG KAQT TEANHTRLSCLA+CLAL
Sbjct: 647 VHPFRALGKNSELLLVSDEEDMATWQRRSLPLQWAGGLKAQTETEANHTRLSCLALCLAL 706
Query: 722 VKRCVLLYGALPAFHDIVRPLKALLAQHLADCSRPLEIQELTRGVLTDMEKQPTRCRPLV 901
V+RCVL YG LP+FHDI RPL+ALL +HLA P +QEL+R VLT+ME QP RPLV
Sbjct: 707 VRRCVLAYGTLPSFHDIARPLRALLTEHLATRCCPPTLQELSRSVLTEMENQPRHYRPLV 766
Query: 902 CEKSKPVPLKLFTPRLVRVLEFGRKQGSSXXXXXXXXLIHKHKREFKGAVREIRKDNQFL 1081
CEKSKPVPLKLFTPRLV+VLEFGRKQGS+ LIHKHKREFKGAVREIRKDNQFL
Sbjct: 767 CEKSKPVPLKLFTPRLVKVLEFGRKQGSTREEQERRRLIHKHKREFKGAVREIRKDNQFL 826
Query: 1082 ARM 1090
ARM
Sbjct: 827 ARM 829
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,113,173
Number of extensions: 1059642
Number of successful extensions: 4597
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4580
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,240,222
Effective search space: 3688217498
Effective search space used: 3688217498
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009786
(1090 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536223.2| PREDICTED: similar to CG5824-PA [Canis familiar... 588 e-168
>ref|XP_536223.2| PREDICTED: similar to CG5824-PA [Canis familiaris].
Length = 989
Score = 588 bits (1515), Expect = e-168
Identities = 291/366 (79%), Positives = 318/366 (86%), Gaps = 3/366 (0%)
Frame = +2
Query: 2 RKCNHPSLAVGNKAKLEKLFGFLLEYVGDLATKDPPDLGVIDKLVVQLYNLCQMFPESAS 181
+ CNHPSLA GNKAKLEKLFGFLLEYVGDLAT D PDLGVIDKLVVQLYNLCQMFP+SAS
Sbjct: 584 KTCNHPSLAAGNKAKLEKLFGFLLEYVGDLATSDTPDLGVIDKLVVQLYNLCQMFPDSAS 643
Query: 182 YSMKFVLRDAMHEMEGMVETTGRAAFPGLDVLVYLKVAGLLFPTSDFWHPVVTPALLCLS 361
S+KFVLRDAMHEMEG VE GR AFPGLDVL+YLK+AG+LFPTSDFWHPV TPAL+C+S
Sbjct: 644 NSIKFVLRDAMHEMEGSVEARGRVAFPGLDVLIYLKIAGMLFPTSDFWHPVTTPALVCMS 703
Query: 362 QLLTKCPVLSLPDVVKGLFVCCLFLDYVSLSQRFIPELLNFLLGILYIAAPGRPGQGYSL 541
QLLTKCPVLSL DVVKGLFVCC+FLDYVSLS+RFIPEL+NFLLGILYIA P + GQGY+L
Sbjct: 704 QLLTKCPVLSLHDVVKGLFVCCMFLDYVSLSRRFIPELVNFLLGILYIATPNKHGQGYTL 763
Query: 542 VPPFRALGKNAGLLWVSDAEDVATWQRRSLSLRWAGSWKAQTRTEANHTRLSCLAVCLAL 721
V PFRA GKN+ LL VSD ED ATWQR LSLRWA KAQT+TEANHTRLSCLAVC+AL
Sbjct: 764 VHPFRASGKNSELLLVSDEEDTATWQRTGLSLRWASGLKAQTKTEANHTRLSCLAVCVAL 823
Query: 722 VKRCVLLYGALPAFHDIVRPLKALLAQHLADCSRPLEIQEL---TRGVLTDMEKQPTRCR 892
VK CVLLY +LPAFHDI+RPL+ALL +HLA+ + P E+QEL T LT+M KQ RCR
Sbjct: 824 VKHCVLLYSSLPAFHDIMRPLRALLTEHLANRTHPPELQELCQSTLSTLTNMGKQSQRCR 883
Query: 893 PLVCEKSKPVPLKLFTPRLVRVLEFGRKQGSSXXXXXXXXLIHKHKREFKGAVREIRKDN 1072
PLVCEKSKPVPL+LFTPRLV+VLEFGRKQGSS LIHKHKREFKGAVREIR+DN
Sbjct: 884 PLVCEKSKPVPLRLFTPRLVKVLEFGRKQGSSKEEQERKRLIHKHKREFKGAVREIRRDN 943
Query: 1073 QFLARM 1090
QFLARM
Sbjct: 944 QFLARM 949
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,883,685
Number of extensions: 1093178
Number of successful extensions: 4935
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4923
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 259
Effective length of database: 15,407,560
Effective search space: 3990558040
Effective search space used: 3990558040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009786
(1090 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128868.2| PREDICTED: nucleolar protein 14 [Sus scrofa]. 713 0.0
Alignment gi|XP_003356884.1| PREDICTED: nucleolar protein 14-like [Sus sc... 363 e-101
>ref|XP_003128868.2| PREDICTED: nucleolar protein 14 [Sus scrofa].
Length = 852
Score = 713 bits (1841), Expect = 0.0
Identities = 353/363 (97%), Positives = 355/363 (97%)
Frame = +2
Query: 2 RKCNHPSLAVGNKAKLEKLFGFLLEYVGDLATKDPPDLGVIDKLVVQLYNLCQMFPESAS 181
+KCNHPSLAVGNKAKLEKLFGFLLEYVGDLATKDPPDLGVIDKLVVQLYNLCQMFPESAS
Sbjct: 450 QKCNHPSLAVGNKAKLEKLFGFLLEYVGDLATKDPPDLGVIDKLVVQLYNLCQMFPESAS 509
Query: 182 YSMKFVLRDAMHEMEGMVETTGRAAFPGLDVLVYLKVAGLLFPTSDFWHPVVTPALLCLS 361
YSMKFVLRDAMHEMEGMVETTGRAAFPGLDVLVYLKVAGLLFPTSDFWHPVVTPALLCLS
Sbjct: 510 YSMKFVLRDAMHEMEGMVETTGRAAFPGLDVLVYLKVAGLLFPTSDFWHPVVTPALLCLS 569
Query: 362 QLLTKCPVLSLPDVVKGLFVCCLFLDYVSLSQRFIPELLNFLLGILYIAAPGRPGQGYSL 541
QLLTKCPVLSLPDVVKGLFVCCLFLDYVSLSQRFIPELLNFLLGILYIAAPGRPGQGYSL
Sbjct: 570 QLLTKCPVLSLPDVVKGLFVCCLFLDYVSLSQRFIPELLNFLLGILYIAAPGRPGQGYSL 629
Query: 542 VPPFRALGKNAGLLWVSDAEDVATWQRRSLSLRWAGSWKAQTRTEANHTRLSCLAVCLAL 721
VPPFRALGKNAGLLWVSDAEDVATWQRRSLSLRWAGSWKAQTRTEANHTRLSCLAVCLAL
Sbjct: 630 VPPFRALGKNAGLLWVSDAEDVATWQRRSLSLRWAGSWKAQTRTEANHTRLSCLAVCLAL 689
Query: 722 VKRCVLLYGALPAFHDIVRPLKALLAQHLADCSRPLEIQELTRGVLTDMEKQPTRCRPLV 901
VKRCVLLYGALPAFHDIVRPLKALLAQHLADCSRPLEIQELTRGVLTDMEKQPTRCRPLV
Sbjct: 690 VKRCVLLYGALPAFHDIVRPLKALLAQHLADCSRPLEIQELTRGVLTDMEKQPTRCRPLV 749
Query: 902 CEKSKPVPLKLFTPRLVRVLEFGRKQGSSXXXXXXXXLIHKHKREFKGAVREIRKDNQFL 1081
CEKSKPVPLKLFTPRLVRVLEFGRKQGSS LIHKHKREFKGAVREIR+DNQFL
Sbjct: 750 CEKSKPVPLKLFTPRLVRVLEFGRKQGSSREEQERRRLIHKHKREFKGAVREIRRDNQFL 809
Query: 1082 ARM 1090
ARM
Sbjct: 810 ARM 812
>ref|XP_003356884.1| PREDICTED: nucleolar protein 14-like [Sus scrofa].
Length = 245
Score = 363 bits (933), Expect = e-101
Identities = 180/188 (95%), Positives = 180/188 (95%)
Frame = +2
Query: 527 QGYSLVPPFRALGKNAGLLWVSDAEDVATWQRRSLSLRWAGSWKAQTRTEANHTRLSCLA 706
QGYSLVPPFRALGKNAGLLWVSDAEDVATWQRRSLSLRWAGSWKAQTRTEANHTRLSCLA
Sbjct: 18 QGYSLVPPFRALGKNAGLLWVSDAEDVATWQRRSLSLRWAGSWKAQTRTEANHTRLSCLA 77
Query: 707 VCLALVKRCVLLYGALPAFHDIVRPLKALLAQHLADCSRPLEIQELTRGVLTDMEKQPTR 886
VCLALVKRCVLLYGALPAFHDIVRPLKALLAQHLADCSRPLEIQELTRGVLTDMEKQPTR
Sbjct: 78 VCLALVKRCVLLYGALPAFHDIVRPLKALLAQHLADCSRPLEIQELTRGVLTDMEKQPTR 137
Query: 887 CRPLVCEKSKPVPLKLFTPRLVRVLEFGRKQGSSXXXXXXXXLIHKHKREFKGAVREIRK 1066
CRPLVCEKSKPVPLKLFTPRLVRVLEFGRKQGSS LIHKHKREFKGAVREIRK
Sbjct: 138 CRPLVCEKSKPVPLKLFTPRLVRVLEFGRKQGSSREEQERRRLIHKHKREFKGAVREIRK 197
Query: 1067 DNQFLARM 1090
DNQFLARM
Sbjct: 198 DNQFLARM 205
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,914,521
Number of extensions: 682568
Number of successful extensions: 2994
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2990
Number of HSP's successfully gapped: 2
Length of query: 363
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 263
Effective length of database: 8,854,232
Effective search space: 2328663016
Effective search space used: 2328663016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009786
(1090 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083554.2| nucleolar protein 14 [Mus musculus]. 558 e-159
>ref|NP_083554.2| nucleolar protein 14 [Mus musculus].
Length = 860
Score = 558 bits (1437), Expect = e-159
Identities = 275/363 (75%), Positives = 305/363 (84%)
Frame = +2
Query: 2 RKCNHPSLAVGNKAKLEKLFGFLLEYVGDLATKDPPDLGVIDKLVVQLYNLCQMFPESAS 181
+KCNHPSLAVGNKAKLEKLFGFLL+Y+GDLAT PDL IDKLVV LY+LCQMFPESAS
Sbjct: 458 QKCNHPSLAVGNKAKLEKLFGFLLQYIGDLATDSTPDLKTIDKLVVHLYSLCQMFPESAS 517
Query: 182 YSMKFVLRDAMHEMEGMVETTGRAAFPGLDVLVYLKVAGLLFPTSDFWHPVVTPALLCLS 361
S++FVLRDAMHEME M+ET GRAAFPGLDVL+YLK+ GLLFPTSDFWHPVVTPALLC+S
Sbjct: 518 DSIRFVLRDAMHEMEEMIETKGRAAFPGLDVLIYLKITGLLFPTSDFWHPVVTPALLCMS 577
Query: 362 QLLTKCPVLSLPDVVKGLFVCCLFLDYVSLSQRFIPELLNFLLGILYIAAPGRPGQGYSL 541
Q+LTKCPV+SL DV+KGLFVCCLFL+YVSLS+RFIPEL NFLLGILYIA P QG +L
Sbjct: 578 QMLTKCPVMSLQDVIKGLFVCCLFLEYVSLSRRFIPELFNFLLGILYIATPNTKSQGSTL 637
Query: 542 VPPFRALGKNAGLLWVSDAEDVATWQRRSLSLRWAGSWKAQTRTEANHTRLSCLAVCLAL 721
V PFRALGKN+ LL VSD DV TWQR SL L WA T TEANHTRLSC+A CL+L
Sbjct: 638 VHPFRALGKNSELLVVSDKADVTTWQRGSLPLHWANRLSTLTATEANHTRLSCVASCLSL 697
Query: 722 VKRCVLLYGALPAFHDIVRPLKALLAQHLADCSRPLEIQELTRGVLTDMEKQPTRCRPLV 901
+K CVL+Y ALP+FH I RP +ALL++HLADCS P E+QEL + +L+ ME Q CRPLV
Sbjct: 698 MKHCVLMYQALPSFHAIFRPHQALLSKHLADCSLPQELQELAQSILSAMEGQKQHCRPLV 757
Query: 902 CEKSKPVPLKLFTPRLVRVLEFGRKQGSSXXXXXXXXLIHKHKREFKGAVREIRKDNQFL 1081
CEKSKPVPLK FTPRLV+VLEFGRKQGSS LIHKHKREFKGAVREIRKDNQFL
Sbjct: 758 CEKSKPVPLKQFTPRLVKVLEFGRKQGSSKEEQERKRLIHKHKREFKGAVREIRKDNQFL 817
Query: 1082 ARM 1090
ARM
Sbjct: 818 ARM 820
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,548,657
Number of extensions: 886382
Number of successful extensions: 3754
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3742
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 260
Effective length of database: 12,523,851
Effective search space: 3256201260
Effective search space used: 3256201260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009786
(1090 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003694.1| nucleolar protein 14 [Homo sapiens]. 576 e-164
>ref|NP_003694.1| nucleolar protein 14 [Homo sapiens].
Length = 857
Score = 576 bits (1484), Expect = e-164
Identities = 286/363 (78%), Positives = 313/363 (86%)
Frame = +2
Query: 2 RKCNHPSLAVGNKAKLEKLFGFLLEYVGDLATKDPPDLGVIDKLVVQLYNLCQMFPESAS 181
+KCNHPSLA GNKAKLEKLFGFLLEYVGDLAT DPPDL VIDKLVV LY+LCQMFPESAS
Sbjct: 455 QKCNHPSLAEGNKAKLEKLFGFLLEYVGDLATDDPPDLTVIDKLVVHLYHLCQMFPESAS 514
Query: 182 YSMKFVLRDAMHEMEGMVETTGRAAFPGLDVLVYLKVAGLLFPTSDFWHPVVTPALLCLS 361
++KFVLRDAMHEME M+ET GRAA PGLDVL+YLK+ GLLFPTSDFWHPVVTPAL+CLS
Sbjct: 515 DAIKFVLRDAMHEMEEMIETKGRAALPGLDVLIYLKITGLLFPTSDFWHPVVTPALVCLS 574
Query: 362 QLLTKCPVLSLPDVVKGLFVCCLFLDYVSLSQRFIPELLNFLLGILYIAAPGRPGQGYSL 541
QLLTKCP+LSL DVVKGLFVCCLFL+YV+LSQRFIPEL+NFLLGILYIA P + QG +L
Sbjct: 575 QLLTKCPILSLQDVVKGLFVCCLFLEYVALSQRFIPELINFLLGILYIATPNKASQGSTL 634
Query: 542 VPPFRALGKNAGLLWVSDAEDVATWQRRSLSLRWAGSWKAQTRTEANHTRLSCLAVCLAL 721
V PFRALGKN+ LL VS EDVATWQ+ SLSLRWA +A T TEANH RLSCLAV LAL
Sbjct: 635 VHPFRALGKNSELLVVSAREDVATWQQSSLSLRWASRLRAPTSTEANHIRLSCLAVGLAL 694
Query: 722 VKRCVLLYGALPAFHDIVRPLKALLAQHLADCSRPLEIQELTRGVLTDMEKQPTRCRPLV 901
+KRCVL+YG+LP+FH I+ PL+ALL HLADCS P E+QEL + LT+ME Q CRPL
Sbjct: 695 LKRCVLMYGSLPSFHAIMGPLQALLTDHLADCSHPQELQELCQSTLTEMESQKQLCRPLT 754
Query: 902 CEKSKPVPLKLFTPRLVRVLEFGRKQGSSXXXXXXXXLIHKHKREFKGAVREIRKDNQFL 1081
CEKSKPVPLKLFTPRLV+VLEFGRKQGSS LIHKHKREFKGAVREIRKDNQFL
Sbjct: 755 CEKSKPVPLKLFTPRLVKVLEFGRKQGSSKEEQERKRLIHKHKREFKGAVREIRKDNQFL 814
Query: 1082 ARM 1090
ARM
Sbjct: 815 ARM 817
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,998,165
Number of extensions: 1066414
Number of successful extensions: 4630
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4611
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,868,908
Effective search space: 3851047172
Effective search space used: 3851047172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009786
(1090 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 319 2e-84
>Sscrofa_Chr08
|| Length = 148491826
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 530 ggttacagcctggtgcccccgttcagagccctcgggaagaacgccgggctgctctgggtt 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1303226 ggttacagcctggtgcccccgttcagagccctcgggaagaacgccgggctgctctgggtt 1303167
Query: 590 tccgacgcagaggacgtggccacgtggcagaggaggagcctctcgctccgttgggcaggg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1303166 tccgacgcagaggacgtggccacgtggcagaggaggagcctctcgctccgttgggcaggg 1303107
Query: 650 agctggaaggcgcagacgaggacggaggccaaccacaccag 690
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1303106 agctggaaggcgcagacgaggacggaggccaaccacaccag 1303066
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 688 cagactgtcctgcctggccgtgtgtctggccctggtgaagcgctgtgtgctcctgtacgg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1300625 cagactgtcctgcctggccgtgtgtctggccctggtgaagcgctgtgtgctcctgtacgg 1300566
Query: 748 cgcgctgccagccttccacgacatcgtgaggcccctgaaagccctcctcgcccaacacct 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1300565 cgcgctgccagccttccacgacatcgtgaggcccctgaaagccctcctcgcccaacacct 1300506
Query: 808 ggccgactgcagccgccccctcgagatccagg 839
||||||||||||||||||||||||||||||||
Sbjct: 1300505 ggccgactgcagccgccccctcgagatccagg 1300474
Score = 270 bits (136), Expect = 1e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 139 gcagttgtataatctctgccagatgtttcctgagtctgcaagctactccatgaaattcgt 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1357652 gcagttgtataatctctgccagatgtttcctgagtctgcaagctactccatgaaattcgt 1357593
Query: 199 ccttcgagacgccatgcatgagatggaaggaatggttgagaccaccggccgggcggcctt 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1357592 ccttcgagacgccatgcatgagatggaaggaatggttgagaccaccggccgggcggcctt 1357533
Query: 259 ccccggcctggacgtg 274
||||||||||||||||
Sbjct: 1357532 ccccggcctggacgtg 1357517
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 836 caggagctgacccgaggcgtcctgacggacatggagaagcagccgacgcgctgccggccg 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1300138 caggagctgacccgaggcgtcctgacggacatggagaagcagccgacgcgctgccggccg 1300079
Query: 896 ctggtctgcgagaagagcaagcccgtgccgctgaagctgttcaccccccggctggtcaga 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1300078 ctggtctgcgagaagagcaagcccgtgccgctgaagctgttcaccccccggctggtcaga 1300019
Query: 956 gt 957
||
Sbjct: 1300018 gt 1300017
Score = 234 bits (118), Expect = 8e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 375 agtgcccggtgctgtcgctcccggacgtggtgaagggtctcttcgtgtgctgcttgttcc 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1354619 agtgcccggtgctgtcgctcccggacgtggtgaagggtctcttcgtgtgctgcttgttcc 1354560
Query: 435 tggactacgtgtccctgtcccagagattcatacctgagctgcttaatttcctccttgg 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1354559 tggactacgtgtccctgtcccagagattcatacctgagctgcttaatttcctccttgg 1354502
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 274 gctcgtttacctgaaagttgctgggctgctgttcccgacctctgacttctggcacccggt 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1355071 gctcgtttacctgaaagttgctgggctgctgttcccgacctctgacttctggcacccggt 1355012
Query: 334 cgtcactcctgcgctgctgtgtctcagccagctgctcaccaag 376
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1355011 cgtcactcctgcgctgctgtgtctcagccagctgctcaccaag 1354969
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 53 aagctgttcggcttcctcctggagtacgtcggggatctggctacgaaagatccaccagac 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1358874 aagctgttcggcttcctcctggagtacgtcggggatctggctacgaaagatccaccagac 1358815
Query: 113 ctcggcgtcattgataagctggttgtg 139
|||||||||||||||||||||||||||
Sbjct: 1358814 ctcggcgtcattgataagctggttgtg 1358788
Score = 149 bits (75), Expect = 4e-33
Identities = 78/79 (98%)
Strand = Plus / Minus
Query: 1012 actgatccacaaacacaagcgagagttcaagggcgccgtccgcgagatccgcaaagacaa 1071
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1299602 actgatccacaaacacaagcgagagttcaagggcgccgtccgcgagatccgcaaggacaa 1299543
Query: 1072 ccagttcctggcccggatg 1090
|||||||||||||||||||
Sbjct: 1299542 ccagttcctggcccggatg 1299524
Score = 89.7 bits (45), Expect = 3e-15
Identities = 48/49 (97%)
Strand = Plus / Minus
Query: 4 gaaatgcaatcacccgagtctcgcggtgggaaacaaggcaaaattagaa 52
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1359181 gaaatgcaatcacccgagtcttgcggtgggaaacaaggcaaaattagaa 1359133
Score = 79.8 bits (40), Expect = 3e-12
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 493 gatcctttacatcgcagctccagggaggccaggccagggt 532
||||||||||||||||||||||||||||||||||||||||
Sbjct: 1304501 gatcctttacatcgcagctccagggaggccaggccagggt 1304462
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,195,137
Number of extensions: 147
Number of successful extensions: 147
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 10
Length of query: 1090
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1069
Effective length of database: 2,808,413,156
Effective search space: 3002193663764
Effective search space used: 3002193663764
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)