Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009829
(862 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001181953.1| hypothetical protein LOC614794 [Bos taurus]. 153 2e-37
>ref|NP_001181953.1| hypothetical protein LOC614794 [Bos taurus].
Length = 74
Score = 153 bits (386), Expect = 2e-37
Identities = 70/74 (94%), Positives = 72/74 (97%)
Frame = +3
Query: 84 MPRYYEDKPEGGACAGVKEDLGACLLQSDCVLQEGKSPRQCLKEGRCKALQYSFFECKRS 263
MPRYYEDKPEGGACAGVKEDLG CLLQSDCVL+EGKSPRQCLKEG CKAL+YSFFECKRS
Sbjct: 1 MPRYYEDKPEGGACAGVKEDLGLCLLQSDCVLKEGKSPRQCLKEGNCKALKYSFFECKRS 60
Query: 264 MLDARSRFRGRKGY 305
MLDARSRFRGRKGY
Sbjct: 61 MLDARSRFRGRKGY 74
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 27,325,356
Number of extensions: 633376
Number of successful extensions: 1871
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1869
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 186
Effective length of database: 14,339,486
Effective search space: 2667144396
Effective search space used: 2667144396
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009829
(862 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854444.1| PREDICTED: similar to CG13018-PA [Canis familia... 155 5e-38
>ref|XP_854444.1| PREDICTED: similar to CG13018-PA [Canis familiaris].
Length = 74
Score = 155 bits (392), Expect = 5e-38
Identities = 71/74 (95%), Positives = 73/74 (98%)
Frame = +3
Query: 84 MPRYYEDKPEGGACAGVKEDLGACLLQSDCVLQEGKSPRQCLKEGRCKALQYSFFECKRS 263
MPRYYEDKPEGGACAGVKEDLGACLLQSDCVLQEGKSPRQCLKEG CKAL+YSFFECKRS
Sbjct: 1 MPRYYEDKPEGGACAGVKEDLGACLLQSDCVLQEGKSPRQCLKEGNCKALKYSFFECKRS 60
Query: 264 MLDARSRFRGRKGY 305
MLDAR+RFRGRKGY
Sbjct: 61 MLDARARFRGRKGY 74
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 28,458,165
Number of extensions: 636928
Number of successful extensions: 1869
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1868
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 185
Effective length of database: 15,474,232
Effective search space: 2862732920
Effective search space used: 2862732920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009829
(862 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124958.1| PREDICTED: uncharacterized protein C2orf64 h... 132 3e-38
>ref|XP_003124958.1| PREDICTED: uncharacterized protein C2orf64 homolog [Sus scrofa].
Length = 81
Score = 132 bits (332), Expect(2) = 3e-38
Identities = 60/62 (96%), Positives = 61/62 (98%)
Frame = +3
Query: 84 MPRYYEDKPEGGACAGVKEDLGACLLQSDCVLQEGKSPRQCLKEGRCKALQYSFFECKRS 263
MPRYYEDKPEGGACAGVKEDLGACLLQSDCVLQEGKSPRQCLKEG CKALQYSFFECKRS
Sbjct: 1 MPRYYEDKPEGGACAGVKEDLGACLLQSDCVLQEGKSPRQCLKEGSCKALQYSFFECKRS 60
Query: 264 ML 269
M+
Sbjct: 61 MM 62
Score = 44.3 bits (103), Expect(2) = 3e-38
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 271 MPDQDSEEEKDIDTAVLKPR 330
MPDQDSEEEKDIDTAVLKPR
Sbjct: 62 MPDQDSEEEKDIDTAVLKPR 81
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,727,465
Number of extensions: 430389
Number of successful extensions: 1163
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1161
Number of HSP's successfully gapped: 2
Length of query: 287
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 189
Effective length of database: 8,904,026
Effective search space: 1682860914
Effective search space used: 1682860914
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009829
(862 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_932123.3| hypothetical protein LOC76178 [Mus musculus]. 154 1e-37
>ref|NP_932123.3| hypothetical protein LOC76178 [Mus musculus].
Length = 74
Score = 154 bits (388), Expect = 1e-37
Identities = 71/74 (95%), Positives = 72/74 (97%)
Frame = +3
Query: 84 MPRYYEDKPEGGACAGVKEDLGACLLQSDCVLQEGKSPRQCLKEGRCKALQYSFFECKRS 263
MPRYYEDKPEGGACAGVKEDLGACLLQS CVLQEGKSPRQCLKEG C+ALQYSFFECKRS
Sbjct: 1 MPRYYEDKPEGGACAGVKEDLGACLLQSACVLQEGKSPRQCLKEGNCRALQYSFFECKRS 60
Query: 264 MLDARSRFRGRKGY 305
MLDARSRFRGRKGY
Sbjct: 61 MLDARSRFRGRKGY 74
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 23,974,995
Number of extensions: 540761
Number of successful extensions: 1475
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1474
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 187
Effective length of database: 12,613,959
Effective search space: 2358810333
Effective search space used: 2358810333
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009829
(862 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001008216.1| protein C2orf64 [Homo sapiens]. 142 5e-34
>ref|NP_001008216.1| protein C2orf64 [Homo sapiens].
Length = 74
Score = 142 bits (357), Expect = 5e-34
Identities = 62/74 (83%), Positives = 71/74 (95%)
Frame = +3
Query: 84 MPRYYEDKPEGGACAGVKEDLGACLLQSDCVLQEGKSPRQCLKEGRCKALQYSFFECKRS 263
MP+YYEDKP+GGACAG+KEDLGACLLQSDCV+QEGKSPRQCLKEG C +L+Y+FFECKRS
Sbjct: 1 MPKYYEDKPQGGACAGLKEDLGACLLQSDCVVQEGKSPRQCLKEGYCNSLKYAFFECKRS 60
Query: 264 MLDARSRFRGRKGY 305
+LD R+RFRGRKGY
Sbjct: 61 VLDNRARFRGRKGY 74
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 27,999,237
Number of extensions: 628945
Number of successful extensions: 1772
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1772
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 186
Effective length of database: 14,967,800
Effective search space: 2784010800
Effective search space used: 2784010800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009829
(862 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 644 0.0
Sscrofa_Chr16 105 4e-20
Sscrofa_Chr13 70 2e-09
Sscrofa_Chr04 62 5e-07
Sscrofa_Chr02 60 2e-06
>Sscrofa_Chr03
|| Length = 144787322
Score = 644 bits (325), Expect = 0.0
Identities = 332/333 (99%), Gaps = 1/333 (0%)
Strand = Plus / Plus
Query: 528 ccaattctcttgttctaaataatttttaggagaattaattgaacagttgtgggctgggaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58239249 ccaattctcttgttctaaataatttttaggagaattaattgaacagttgtgggctgggaa 58239308
Query: 588 catcatagatgtgttttaagaattgttctgaagcacagaagatggaaagactttattttc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58239309 catcatagatgtgttttaagaattgttctgaagcacagaagatggaaagactttattttc 58239368
Query: 648 aaacttgactcttcaaccagttgatacagtttgtacatcctttgggaatgctgtgaaggc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58239369 aaacttgactcttcaaccagttgatacagtttgtacatcctttgggaatgctgtgaaggc 58239428
Query: 708 cactgaggggactattaaaatcaacatggagtctggtgagatgtctgtctggaaagttta 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58239429 cactgaggggactattaaaatcaacatggagtctggtgagatgtctgtctggaaagttta 58239488
Query: 768 ggataaagcttttttagtcagtctgtactatttagttctaaaataaattgtgtttgattt 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58239489 ggataaagcttttttagtcagtctgtactatttagttctaaaataaattgtgtttgattt 58239548
Query: 828 cttggagacgaaatgcttc-tttgcattaattc 859
||||||||||||||||||| |||||||||||||
Sbjct: 58239549 cttggagacgaaatgcttcatttgcattaattc 58239581
Score = 456 bits (230), Expect = e-126
Identities = 233/234 (99%)
Strand = Plus / Plus
Query: 266 gttagatgccagatcaagattcagaggaagaaaaggatattgatactgctgtgttgaaac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58238986 gttagatgccagatcaagattcagaggaagaaaaggatattgatactgctgtgttgaaac 58239045
Query: 326 caagatgaaaacaacagagaatttcttctggcctttgaaacagagaaaccaaaataagaa 385
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 58239046 caagatgaaaacaacagagaatttcttctggcctttgaaacagagaagccaaaataagaa 58239105
Query: 386 acagacttttcgtcacatctgttctattgaaccagtttttccctcctcggaacactaaag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58239106 acagacttttcgtcacatctgttctattgaaccagtttttccctcctcggaacactaaag 58239165
Query: 446 aaaatgaatgagttctggttttcagtatgtataaagtaaatgattctctctctc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58239166 aaaatgaatgagttctggttttcagtatgtataaagtaaatgattctctctctc 58239219
Score = 361 bits (182), Expect = 4e-97
Identities = 182/182 (100%)
Strand = Plus / Plus
Query: 2 gcggggtcgctggcgtcctaccgtgtcgggctcggttgcagactcgtgtgtgtcccggcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58229543 gcggggtcgctggcgtcctaccgtgtcgggctcggttgcagactcgtgtgtgtcccggcc 58229602
Query: 62 gcggcgggcgggaggcgcggtcatgcctcggtattacgaggacaagccggagggcggcgc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58229603 gcggcgggcgggaggcgcggtcatgcctcggtattacgaggacaagccggagggcggcgc 58229662
Query: 122 gtgcgcgggcgtgaaggaggacctgggcgcgtgtctgttgcagtcggactgcgtgctcca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58229663 gtgcgcgggcgtgaaggaggacctgggcgcgtgtctgttgcagtcggactgcgtgctcca 58229722
Query: 182 gg 183
||
Sbjct: 58229723 gg 58229724
Score = 163 bits (82), Expect = 2e-37
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 181 aggaaggaaaatcccctcgacagtgtctgaaggaaggaagatgcaaagctttgcaatact 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 58236551 aggaaggaaaatcccctcgacagtgtctgaaggaaggaagctgcaaagctttgcaatact 58236610
Query: 241 cattttttgagtgtaaaagatcaatg 266
||||||||||||||||||||||||||
Sbjct: 58236611 cattttttgagtgtaaaagatcaatg 58236636
Score = 75.8 bits (38), Expect = 4e-11
Identities = 51/54 (94%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 807 aaaataaattgtgtttgatttcttggagacgaaatgcttc-tttgcattaattc 859
||||||||||||||||||||||||||||| |||||||||| |||||||| ||||
Sbjct: 58400756 aaaataaattgtgtttgatttcttggagaagaaatgcttcatttgcattgattc 58400809
>Sscrofa_Chr16
|| Length = 86898991
Score = 105 bits (53), Expect = 4e-20
Identities = 238/298 (79%), Gaps = 10/298 (3%)
Strand = Plus / Plus
Query: 194 ccctcgacagtgtctgaaggaaggaaga-tgcaaagctttgcaatactcattttttgagt 252
|||| |||||||| ||||| |||||| | |||||| ||||| ||||| |||||| || |
Sbjct: 77309080 ccctggacagtgtttgaagaaaggaaaactgcaaaactttgaaatacctatttttcgaat 77309139
Query: 253 gtaaaagatcaatgttag----atgccagatcaagattcagaggaagaaaaggatattga 308
||||||| ||||||| | ||||||||| |||||||| |||||||||| ||||||||
Sbjct: 77309140 ataaaagaacaatgtttgttggatgccagattaagattcaaaggaagaaaatgatattga 77309199
Query: 309 tactgctgtgttgaaaccaagatgaaaacaacagagaatttcttctggcctttgaaacag 368
| | |||||||||||||||| ||||||||||| || || | ||||| | || ||||||
Sbjct: 77309200 tgccactgtgttgaaaccaagttgaaaacaacaaaggatcttctctggtcattaaaacag 77309259
Query: 369 agaaaccaaaataagaaacagacttttcgtcacatctgttctattgaaccagtttttccc 428
|||| |||||| ||| |||| |||||| || ||| ||| |||||||||
Sbjct: 77309260 agaagtcaaaat-----acacacttactactacatctattaggttggaccggtttttccc 77309314
Query: 429 tcctcggaacactaaagaaaatgaatgagttctggttttcagtatgtataaagtaaat 486
||| |||||||| ||||||||||||||||||| |||| | ||||||||||||||||
Sbjct: 77309315 tccatggaacactggagaaaatgaatgagttctgctttttaatatgtataaagtaaat 77309372
Score = 71.9 bits (36), Expect = 6e-10
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 201 cagtgtctgaaggaaggaagatgcaaagctttgcaatactcattttttgagtgtaaaaga 260
||||||||||||||||||| ||||||| |||| |||||||||| ||||| |||||||||
Sbjct: 29269183 cagtgtctgaaggaaggaaactgcaaagttttgaaatactcattgtttgaatgtaaaaga 29269124
Score = 67.9 bits (34), Expect = 9e-09
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 563 taattgaacagttgtgggctgggaacatcatagatgtgttttaagaattgttctgaagca 622
||||||||||||| ||||||||||| || | || || ||||||| |||||||||||||||
Sbjct: 29268879 taattgaacagttatgggctgggaatataacagttgcgttttaataattgttctgaagca 29268820
Query: 623 cagaagatggaaag 636
||| ||||||||
Sbjct: 29268819 tagagaatggaaag 29268806
Score = 60.0 bits (30), Expect = 2e-06
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 201 cagtgtctgaaggaaggaagatgcaaagctttgcaatactcattttttga 250
||||||||||||||||||| ||||||| |||| |||||||||| |||||
Sbjct: 29270260 cagtgtctgaaggaaggaaactgcaaagttttgaaatactcattgtttga 29270211
>Sscrofa_Chr13
|| Length = 218635234
Score = 69.9 bits (35), Expect = 2e-09
Identities = 62/70 (88%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 243 ttttttgagtgtaaaagatcaatgttagatgccagatcaagattcagaggaagaaaagga 302
|||||| | |||||||||||||| || |||||||||||| | |||||||||||||||||
Sbjct: 146151157 tttttttaatgtaaaagatcaattttggatgccagatca--aatcagaggaagaaaagga 146151100
Query: 303 tattgatact 312
|| |||||||
Sbjct: 146151099 tagtgatact 146151090
>Sscrofa_Chr04
|| Length = 143465943
Score = 61.9 bits (31), Expect = 5e-07
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 569 aacagttgtgggctgggaacatcatagatgtgttttaagaattgttc 615
||||||| ||| || ||||||| ||||||||||||||||||||||||
Sbjct: 75164140 aacagttatggcctaggaacataatagatgtgttttaagaattgttc 75164186
Score = 61.9 bits (31), Expect = 5e-07
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 677 tttgtacatcctttgggaatgctgtgaaggccactgaggggactattaaaatcaacatg 735
||||||||| |||| ||| |||||||||||||| | |||||||||||||||||||||
Sbjct: 75164465 tttgtacattttttgtgaacactgtgaaggccacttatgggactattaaaatcaacatg 75164523
Score = 60.0 bits (30), Expect = 2e-06
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 421 tttttccctcctcggaacactaaagaaaatgaatgagttctggttttcagtatgtataaa 480
|||||||||| | |||||||| |||||||| |||||||||||||||| || || ||||
Sbjct: 75164033 tttttccctcat-ggaacactggagaaaatggatgagttctggttttccctacgtgtaaa 75164091
Query: 481 gtaaatgattctct 494
|||||| |||||||
Sbjct: 75164092 gtaaataattctct 75164105
>Sscrofa_Chr02
|| Length = 162569375
Score = 60.0 bits (30), Expect = 2e-06
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 762 agtttaggataaagcttttttagtcagtctgtactatttagttctaaaataaattgtgtt 821
||||||||||||| | ||| || ||||| ||||||||||||| ||||||||||||||
Sbjct: 5930970 agtttaggataaaacctttgtatgcagtccatactatttagttccaaaataaattgtgtg 5931029
Query: 822 tgatttcttggaga 835
||| ||| ||||||
Sbjct: 5931030 tgacttcgtggaga 5931043
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,563,618
Number of extensions: 277
Number of successful extensions: 277
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 15
Length of query: 862
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 841
Effective length of database: 2,808,413,156
Effective search space: 2361875464196
Effective search space used: 2361875464196
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)