Animal-Genome cDNA 20110601C-009833


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009833
         (748 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001069087.1| 28S ribosomal protein S35, mitochondrial pre...   441   e-124

>ref|NP_001069087.1| 28S ribosomal protein S35, mitochondrial precursor [Bos taurus].
          Length = 325

 Score =  441 bits (1135), Expect = e-124
 Identities = 216/238 (90%), Positives = 225/238 (94%)
 Frame = +1

Query: 34  MAATSLPAWLILKPRAGTFRAFSTAMSPATRSPRPALRTTERTSKPERALRRKALPPRTE 213
           MAA SLPAWL L+ RA T RAFSTA+SP T + R +  TTERTSK ERA RRKALPPRTE
Sbjct: 1   MAAPSLPAWLALQTRARTLRAFSTAVSPVTGAQRLSPPTTERTSKHERAPRRKALPPRTE 60

Query: 214 KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA 393
           KM+VDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA
Sbjct: 61  KMSVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA 120

Query: 394 IKRHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSAGPSIRNPKARVVTLRVKLS 573
           IK+HCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADY+S+GPSIRNPKARVVTLRVKLS
Sbjct: 121 IKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYISSGPSIRNPKARVVTLRVKLS 180

Query: 574 SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYAVYLLTVLYHESWKT 747
           SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYA+YLLTVLYHESWKT
Sbjct: 181 SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYAMYLLTVLYHESWKT 238


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 26,024,396
Number of extensions: 653122
Number of successful extensions: 1916
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1906
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 149
Effective length of database: 14,372,574
Effective search space: 2141513526
Effective search space used: 2141513526
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009833
         (748 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_534855.2| PREDICTED: similar to mitochondrial ribosomal p...   401   e-112

>ref|XP_534855.2| PREDICTED: similar to mitochondrial ribosomal protein S35 [Canis
           familiaris].
          Length = 351

 Score =  401 bits (1030), Expect = e-112
 Identities = 205/266 (77%), Positives = 218/266 (81%), Gaps = 28/266 (10%)
 Frame = +1

Query: 34  MAATSLPAWLILKPRAGTFRAFSTAMSPATRSPRPALRTTERTSKPERALRR-------- 189
           MAA +LPA L+L+P A T RAF T+++PA RS  P+ R  E  S+  RALR         
Sbjct: 1   MAAATLPAGLVLQPGARTLRAFCTSVTPAARSAIPSPR--ECQSRRLRALREVRTESMMA 58

Query: 190 --------------------KALPPRTEKMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYP 309
                                ALPPRTEKM VDQDWPSVYPVAAPFKPSAVPLP+RMGYP
Sbjct: 59  AAVAESSRSWGDSAGLSLALPALPPRTEKMTVDQDWPSVYPVAAPFKPSAVPLPIRMGYP 118

Query: 310 VKRGVPMAKEGNLELLKIPNFLHLTPVAIKRHCEALKDFCTEWPAALDSDEKCEKHFPIE 489
           VKRGVPMAKEGNLELLKIPNFLHLTPVAIK+HCEALKDFCTEWPAALDSDEKCEKHFPIE
Sbjct: 119 VKRGVPMAKEGNLELLKIPNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIE 178

Query: 490 IDTADYVSAGPSIRNPKARVVTLRVKLSSLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTD 669
           IDTADYVSAGPSIRNPKARVVTLRVKLSSLNLDDHAKKKLIKLVG+RYCK+TDVLTI TD
Sbjct: 179 IDTADYVSAGPSIRNPKARVVTLRVKLSSLNLDDHAKKKLIKLVGERYCKTTDVLTITTD 238

Query: 670 RCPLKRQNYDYAVYLLTVLYHESWKT 747
           RCPLKRQNYDYA+YLLTVLYHESWKT
Sbjct: 239 RCPLKRQNYDYAMYLLTVLYHESWKT 264


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 27,116,345
Number of extensions: 672092
Number of successful extensions: 2098
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2092
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 149
Effective length of database: 15,540,904
Effective search space: 2315594696
Effective search space used: 2315594696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009833
         (748 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003126456.1| PREDICTED: 28S ribosomal protein S35, mitoch...   484   e-137
Alignment   gi|XP_003126457.1| PREDICTED: 28S ribosomal protein S35, mitoch...   473   e-134

>ref|XP_003126456.1| PREDICTED: 28S ribosomal protein S35, mitochondrial-like isoform 1
           [Sus scrofa].
          Length = 325

 Score =  484 bits (1246), Expect = e-137
 Identities = 237/238 (99%), Positives = 237/238 (99%)
 Frame = +1

Query: 34  MAATSLPAWLILKPRAGTFRAFSTAMSPATRSPRPALRTTERTSKPERALRRKALPPRTE 213
           MAATSLPAWLILK RAGTFRAFSTAMSPATRSPRPALRTTERTSKPERALRRKALPPRTE
Sbjct: 1   MAATSLPAWLILKSRAGTFRAFSTAMSPATRSPRPALRTTERTSKPERALRRKALPPRTE 60

Query: 214 KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA 393
           KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA
Sbjct: 61  KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA 120

Query: 394 IKRHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSAGPSIRNPKARVVTLRVKLS 573
           IKRHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSAGPSIRNPKARVVTLRVKLS
Sbjct: 121 IKRHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSAGPSIRNPKARVVTLRVKLS 180

Query: 574 SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYAVYLLTVLYHESWKT 747
           SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYAVYLLTVLYHESWKT
Sbjct: 181 SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYAVYLLTVLYHESWKT 238


>ref|XP_003126457.1| PREDICTED: 28S ribosomal protein S35, mitochondrial-like isoform 2
           [Sus scrofa].
          Length = 323

 Score =  473 bits (1217), Expect = e-134
 Identities = 234/238 (98%), Positives = 234/238 (98%)
 Frame = +1

Query: 34  MAATSLPAWLILKPRAGTFRAFSTAMSPATRSPRPALRTTERTSKPERALRRKALPPRTE 213
           MAATSLPAWLILK RAGTFRAFSTAMSPATRSPRPAL   ERTSKPERALRRKALPPRTE
Sbjct: 1   MAATSLPAWLILKSRAGTFRAFSTAMSPATRSPRPAL--PERTSKPERALRRKALPPRTE 58

Query: 214 KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA 393
           KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA
Sbjct: 59  KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA 118

Query: 394 IKRHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSAGPSIRNPKARVVTLRVKLS 573
           IKRHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSAGPSIRNPKARVVTLRVKLS
Sbjct: 119 IKRHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSAGPSIRNPKARVVTLRVKLS 178

Query: 574 SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYAVYLLTVLYHESWKT 747
           SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYAVYLLTVLYHESWKT
Sbjct: 179 SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYAVYLLTVLYHESWKT 236


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 16,725,545
Number of extensions: 417399
Number of successful extensions: 1156
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1151
Number of HSP's successfully gapped: 2
Length of query: 249
Length of database: 11,343,932
Length adjustment: 96
Effective length of query: 153
Effective length of database: 8,953,820
Effective search space: 1369934460
Effective search space used: 1369934460
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009833
         (748 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_663548.2| 28S ribosomal protein S35, mitochondrial precur...   389   e-108

>ref|NP_663548.2| 28S ribosomal protein S35, mitochondrial precursor [Mus musculus].
          Length = 320

 Score =  389 bits (998), Expect = e-108
 Identities = 193/238 (81%), Positives = 206/238 (86%)
 Frame = +1

Query: 34  MAATSLPAWLILKPRAGTFRAFSTAMSPATRSPRPALRTTERTSKPERALRRKALPPRTE 213
           MAA +L     L P A   R FS+  SPA  +PR   RT  R+ +P   +RRKALPPRTE
Sbjct: 1   MAAAALQLRQTLCPGARVLRTFSSVASPA--APRAGPRTASRSERP---MRRKALPPRTE 55

Query: 214 KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA 393
           KM  DQDWPSVYP AAPFKPSAVPLPVRMGYPVK+GVPMAKEGNLELLKIPNFLHLTPVA
Sbjct: 56  KMDTDQDWPSVYPTAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVA 115

Query: 394 IKRHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSAGPSIRNPKARVVTLRVKLS 573
           IKRHC ALKDFCTEWPAALDSDEKCE+HFP+EIDTADYVS+GPSIRNPKAR VTLRVKLS
Sbjct: 116 IKRHCAALKDFCTEWPAALDSDEKCEEHFPVEIDTADYVSSGPSIRNPKARAVTLRVKLS 175

Query: 574 SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYAVYLLTVLYHESWKT 747
           SLNLD+HAKKKLIKLVG+RYCK+TDVLTI TDRCPLKRQN DYAVYLLTVLYHESWKT
Sbjct: 176 SLNLDNHAKKKLIKLVGERYCKATDVLTITTDRCPLKRQNCDYAVYLLTVLYHESWKT 233


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 22,852,721
Number of extensions: 569442
Number of successful extensions: 1613
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1611
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 150
Effective length of database: 12,643,995
Effective search space: 1896599250
Effective search space used: 1896599250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009833
         (748 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_068593.2| 28S ribosomal protein S35, mitochondrial isofor...   417   e-117
Alignment   gi|NP_001177793.1| 28S ribosomal protein S35, mitochondrial iso...   298   5e-85

>ref|NP_068593.2| 28S ribosomal protein S35, mitochondrial isoform 1 precursor [Homo
           sapiens].
          Length = 323

 Score =  417 bits (1071), Expect = e-117
 Identities = 204/238 (85%), Positives = 217/238 (91%)
 Frame = +1

Query: 34  MAATSLPAWLILKPRAGTFRAFSTAMSPATRSPRPALRTTERTSKPERALRRKALPPRTE 213
           MAA +LPAWL L+ RA T RAFSTA+  AT  P P+L   ERT   ER  RRKALPPRTE
Sbjct: 1   MAAAALPAWLSLQSRARTLRAFSTAVYSATPVPTPSL--PERTPGNERPPRRKALPPRTE 58

Query: 214 KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA 393
           KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVK+GVPMAKEGNLELLKIPNFLHLTPVA
Sbjct: 59  KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVA 118

Query: 394 IKRHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSAGPSIRNPKARVVTLRVKLS 573
           IK+HCEALKDFCTEWPAALDSDEKCEKHFPIEID+ DYVS+GPS+RNP+ARVV LRVKLS
Sbjct: 119 IKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRNPRARVVVLRVKLS 178

Query: 574 SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYAVYLLTVLYHESWKT 747
           SLNLDDHAKKKLIKLVG+RYCK+TDVLTIKTDRCPL+RQNYDYAVYLLTVLYHESW T
Sbjct: 179 SLNLDDHAKKKLIKLVGERYCKTTDVLTIKTDRCPLRRQNYDYAVYLLTVLYHESWNT 236


>ref|NP_001177793.1| 28S ribosomal protein S35, mitochondrial isoform 2 precursor [Homo
           sapiens].
          Length = 194

 Score =  298 bits (764), Expect(2) = 5e-85
 Identities = 148/184 (80%), Positives = 158/184 (85%)
 Frame = +1

Query: 34  MAATSLPAWLILKPRAGTFRAFSTAMSPATRSPRPALRTTERTSKPERALRRKALPPRTE 213
           MAA +LPAWL L+ RA T RAFSTA+  AT  P P+L   ERT   ER  RRKALPPRTE
Sbjct: 1   MAAAALPAWLSLQSRARTLRAFSTAVYSATPVPTPSL--PERTPGNERPPRRKALPPRTE 58

Query: 214 KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA 393
           KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVK+GVPMAKEGNLELLKIPNFLHLTPVA
Sbjct: 59  KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVA 118

Query: 394 IKRHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSAGPSIRNPKARVVTLRVKLS 573
           IK+HCEALKDFCTEWPAALDSDEKCEKHFPIEID+ DYVS+GPS+RNP+ARVV LRV   
Sbjct: 119 IKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRNPRARVVVLRVPFK 178

Query: 574 SLNL 585
              L
Sbjct: 179 EAEL 182



 Score = 34.7 bits (78), Expect(2) = 5e-85
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +3

Query: 669 QVPFKETEL*LCSISTNGFIP 731
           +VPFKE EL LCS+STN  IP
Sbjct: 174 RVPFKEAELRLCSVSTNSVIP 194


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 26,705,434
Number of extensions: 663326
Number of successful extensions: 1967
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1964
Number of HSP's successfully gapped: 3
Length of query: 249
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 149
Effective length of database: 15,000,764
Effective search space: 2235113836
Effective search space used: 2235113836
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009833
         (748 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr05                                                         337   5e-90

>Sscrofa_Chr05 
||          Length = 111506441

 Score =  337 bits (170), Expect = 5e-90
 Identities = 170/170 (100%)
 Strand = Plus / Minus

                                                                            
Query: 191      aggcactacctcctaggacagagaaaatggctgttgaccaagactggcctagtgtttacc 250
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49586653 aggcactacctcctaggacagagaaaatggctgttgaccaagactggcctagtgtttacc 49586594

                                                                            
Query: 251      cagttgcagcaccgtttaaaccttcagcggtacctcttcctgtccgaatgggttatccag 310
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49586593 cagttgcagcaccgtttaaaccttcagcggtacctcttcctgtccgaatgggttatccag 49586534

                                                                  
Query: 311      taaaaagaggggtgcccatggctaaggagggaaatcttgagcttttaaag 360
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49586533 taaaaagaggggtgcccatggctaaggagggaaatcttgagcttttaaag 49586484



 Score =  285 bits (144), Expect = 2e-74
 Identities = 144/144 (100%)
 Strand = Plus / Minus

                                                                            
Query: 420      agatttttgtactgagtggccagctgccttagacagtgatgagaaatgcgagaagcactt 479
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49575566 agatttttgtactgagtggccagctgccttagacagtgatgagaaatgcgagaagcactt 49575507

                                                                            
Query: 480      tccaattgaaattgatacagctgattatgtttcagcaggaccatctattcgaaaccccaa 539
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49575506 tccaattgaaattgatacagctgattatgtttcagcaggaccatctattcgaaaccccaa 49575447

                                        
Query: 540      agcacgagtagtaaccttaagggt 563
                ||||||||||||||||||||||||
Sbjct: 49575446 agcacgagtagtaaccttaagggt 49575423



 Score =  283 bits (143), Expect = 7e-74
 Identities = 146/147 (99%)
 Strand = Plus / Minus

                                                                            
Query: 1        gcttgtcccctgccgcttgccgtctgcgcagacatggcggccacctcgctccctgcatgg 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49591092 gcttgtcccctgccgcttgccgtctgcgcagacatggcggccacctcgctccctgcatgg 49591033

                                                                            
Query: 61       ctgatcctgaagccacgggccggtacctttcgtgccttttctacggctatgtctccggca 120
                |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49591032 ctgatcctgaagtcacgggccggtacctttcgtgccttttctacggctatgtctccggca 49590973

                                           
Query: 121      acacgctctccgagaccagccctgcgt 147
                |||||||||||||||||||||||||||
Sbjct: 49590972 acacgctctccgagaccagccctgcgt 49590946



 Score =  224 bits (113), Expect = 5e-56
 Identities = 113/113 (100%)
 Strand = Plus / Minus

                                                                            
Query: 561      ggttaaactttccagtttgaatttagatgatcatgcaaagaagaaacttattaaacttgt 620
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49569071 ggttaaactttccagtttgaatttagatgatcatgcaaagaagaaacttattaaacttgt 49569012

                                                                     
Query: 621      aggagatcgatactgcaagagcacagatgtgcttaccatcaaaacagacaggt 673
                |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49569011 aggagatcgatactgcaagagcacagatgtgcttaccatcaaaacagacaggt 49568959



 Score =  135 bits (68), Expect = 4e-29
 Identities = 71/72 (98%)
 Strand = Plus / Minus

                                                                            
Query: 670      aggtgccctttaaagagacagaattatgattatgcagtatatctactaacggttttatac 729
                |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 49566801 aggtgccctttaaagagacagaattatgattatgcagtatatctactaacagttttatac 49566742

                            
Query: 730      catgagtcctgg 741
                ||||||||||||
Sbjct: 49566741 catgagtcctgg 49566730



 Score =  125 bits (63), Expect = 4e-26
 Identities = 63/63 (100%)
 Strand = Plus / Minus

                                                                            
Query: 359      agatccccaattttctgcatttgacccctgtagcaattaaaaggcactgtgaagctctta 418
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49584409 agatccccaattttctgcatttgacccctgtagcaattaaaaggcactgtgaagctctta 49584350

                   
Query: 419      aag 421
                |||
Sbjct: 49584349 aag 49584347



 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                                
Query: 146      gtacaacagaaagaacgtccaaacctgaaagggcactgagaagaaagg 193
                ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49587521 gtacaacagaaagaacgtccaaacctgaaagggcactgagaagaaagg 49587474


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,099,774
Number of extensions: 380
Number of successful extensions: 380
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 7
Length of query: 748
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 727
Effective length of database: 2,808,413,156
Effective search space: 2041716364412
Effective search space used: 2041716364412
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)