Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009833
(748 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069087.1| 28S ribosomal protein S35, mitochondrial pre... 441 e-124
>ref|NP_001069087.1| 28S ribosomal protein S35, mitochondrial precursor [Bos taurus].
Length = 325
Score = 441 bits (1135), Expect = e-124
Identities = 216/238 (90%), Positives = 225/238 (94%)
Frame = +1
Query: 34 MAATSLPAWLILKPRAGTFRAFSTAMSPATRSPRPALRTTERTSKPERALRRKALPPRTE 213
MAA SLPAWL L+ RA T RAFSTA+SP T + R + TTERTSK ERA RRKALPPRTE
Sbjct: 1 MAAPSLPAWLALQTRARTLRAFSTAVSPVTGAQRLSPPTTERTSKHERAPRRKALPPRTE 60
Query: 214 KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA 393
KM+VDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA
Sbjct: 61 KMSVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA 120
Query: 394 IKRHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSAGPSIRNPKARVVTLRVKLS 573
IK+HCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADY+S+GPSIRNPKARVVTLRVKLS
Sbjct: 121 IKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYISSGPSIRNPKARVVTLRVKLS 180
Query: 574 SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYAVYLLTVLYHESWKT 747
SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYA+YLLTVLYHESWKT
Sbjct: 181 SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYAMYLLTVLYHESWKT 238
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 26,024,396
Number of extensions: 653122
Number of successful extensions: 1916
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1906
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 149
Effective length of database: 14,372,574
Effective search space: 2141513526
Effective search space used: 2141513526
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009833
(748 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534855.2| PREDICTED: similar to mitochondrial ribosomal p... 401 e-112
>ref|XP_534855.2| PREDICTED: similar to mitochondrial ribosomal protein S35 [Canis
familiaris].
Length = 351
Score = 401 bits (1030), Expect = e-112
Identities = 205/266 (77%), Positives = 218/266 (81%), Gaps = 28/266 (10%)
Frame = +1
Query: 34 MAATSLPAWLILKPRAGTFRAFSTAMSPATRSPRPALRTTERTSKPERALRR-------- 189
MAA +LPA L+L+P A T RAF T+++PA RS P+ R E S+ RALR
Sbjct: 1 MAAATLPAGLVLQPGARTLRAFCTSVTPAARSAIPSPR--ECQSRRLRALREVRTESMMA 58
Query: 190 --------------------KALPPRTEKMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYP 309
ALPPRTEKM VDQDWPSVYPVAAPFKPSAVPLP+RMGYP
Sbjct: 59 AAVAESSRSWGDSAGLSLALPALPPRTEKMTVDQDWPSVYPVAAPFKPSAVPLPIRMGYP 118
Query: 310 VKRGVPMAKEGNLELLKIPNFLHLTPVAIKRHCEALKDFCTEWPAALDSDEKCEKHFPIE 489
VKRGVPMAKEGNLELLKIPNFLHLTPVAIK+HCEALKDFCTEWPAALDSDEKCEKHFPIE
Sbjct: 119 VKRGVPMAKEGNLELLKIPNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIE 178
Query: 490 IDTADYVSAGPSIRNPKARVVTLRVKLSSLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTD 669
IDTADYVSAGPSIRNPKARVVTLRVKLSSLNLDDHAKKKLIKLVG+RYCK+TDVLTI TD
Sbjct: 179 IDTADYVSAGPSIRNPKARVVTLRVKLSSLNLDDHAKKKLIKLVGERYCKTTDVLTITTD 238
Query: 670 RCPLKRQNYDYAVYLLTVLYHESWKT 747
RCPLKRQNYDYA+YLLTVLYHESWKT
Sbjct: 239 RCPLKRQNYDYAMYLLTVLYHESWKT 264
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 27,116,345
Number of extensions: 672092
Number of successful extensions: 2098
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2092
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 149
Effective length of database: 15,540,904
Effective search space: 2315594696
Effective search space used: 2315594696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009833
(748 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126456.1| PREDICTED: 28S ribosomal protein S35, mitoch... 484 e-137
Alignment gi|XP_003126457.1| PREDICTED: 28S ribosomal protein S35, mitoch... 473 e-134
>ref|XP_003126456.1| PREDICTED: 28S ribosomal protein S35, mitochondrial-like isoform 1
[Sus scrofa].
Length = 325
Score = 484 bits (1246), Expect = e-137
Identities = 237/238 (99%), Positives = 237/238 (99%)
Frame = +1
Query: 34 MAATSLPAWLILKPRAGTFRAFSTAMSPATRSPRPALRTTERTSKPERALRRKALPPRTE 213
MAATSLPAWLILK RAGTFRAFSTAMSPATRSPRPALRTTERTSKPERALRRKALPPRTE
Sbjct: 1 MAATSLPAWLILKSRAGTFRAFSTAMSPATRSPRPALRTTERTSKPERALRRKALPPRTE 60
Query: 214 KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA 393
KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA
Sbjct: 61 KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA 120
Query: 394 IKRHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSAGPSIRNPKARVVTLRVKLS 573
IKRHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSAGPSIRNPKARVVTLRVKLS
Sbjct: 121 IKRHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSAGPSIRNPKARVVTLRVKLS 180
Query: 574 SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYAVYLLTVLYHESWKT 747
SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYAVYLLTVLYHESWKT
Sbjct: 181 SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYAVYLLTVLYHESWKT 238
>ref|XP_003126457.1| PREDICTED: 28S ribosomal protein S35, mitochondrial-like isoform 2
[Sus scrofa].
Length = 323
Score = 473 bits (1217), Expect = e-134
Identities = 234/238 (98%), Positives = 234/238 (98%)
Frame = +1
Query: 34 MAATSLPAWLILKPRAGTFRAFSTAMSPATRSPRPALRTTERTSKPERALRRKALPPRTE 213
MAATSLPAWLILK RAGTFRAFSTAMSPATRSPRPAL ERTSKPERALRRKALPPRTE
Sbjct: 1 MAATSLPAWLILKSRAGTFRAFSTAMSPATRSPRPAL--PERTSKPERALRRKALPPRTE 58
Query: 214 KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA 393
KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA
Sbjct: 59 KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA 118
Query: 394 IKRHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSAGPSIRNPKARVVTLRVKLS 573
IKRHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSAGPSIRNPKARVVTLRVKLS
Sbjct: 119 IKRHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSAGPSIRNPKARVVTLRVKLS 178
Query: 574 SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYAVYLLTVLYHESWKT 747
SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYAVYLLTVLYHESWKT
Sbjct: 179 SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYAVYLLTVLYHESWKT 236
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 16,725,545
Number of extensions: 417399
Number of successful extensions: 1156
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1151
Number of HSP's successfully gapped: 2
Length of query: 249
Length of database: 11,343,932
Length adjustment: 96
Effective length of query: 153
Effective length of database: 8,953,820
Effective search space: 1369934460
Effective search space used: 1369934460
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009833
(748 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663548.2| 28S ribosomal protein S35, mitochondrial precur... 389 e-108
>ref|NP_663548.2| 28S ribosomal protein S35, mitochondrial precursor [Mus musculus].
Length = 320
Score = 389 bits (998), Expect = e-108
Identities = 193/238 (81%), Positives = 206/238 (86%)
Frame = +1
Query: 34 MAATSLPAWLILKPRAGTFRAFSTAMSPATRSPRPALRTTERTSKPERALRRKALPPRTE 213
MAA +L L P A R FS+ SPA +PR RT R+ +P +RRKALPPRTE
Sbjct: 1 MAAAALQLRQTLCPGARVLRTFSSVASPA--APRAGPRTASRSERP---MRRKALPPRTE 55
Query: 214 KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA 393
KM DQDWPSVYP AAPFKPSAVPLPVRMGYPVK+GVPMAKEGNLELLKIPNFLHLTPVA
Sbjct: 56 KMDTDQDWPSVYPTAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVA 115
Query: 394 IKRHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSAGPSIRNPKARVVTLRVKLS 573
IKRHC ALKDFCTEWPAALDSDEKCE+HFP+EIDTADYVS+GPSIRNPKAR VTLRVKLS
Sbjct: 116 IKRHCAALKDFCTEWPAALDSDEKCEEHFPVEIDTADYVSSGPSIRNPKARAVTLRVKLS 175
Query: 574 SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYAVYLLTVLYHESWKT 747
SLNLD+HAKKKLIKLVG+RYCK+TDVLTI TDRCPLKRQN DYAVYLLTVLYHESWKT
Sbjct: 176 SLNLDNHAKKKLIKLVGERYCKATDVLTITTDRCPLKRQNCDYAVYLLTVLYHESWKT 233
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 22,852,721
Number of extensions: 569442
Number of successful extensions: 1613
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1611
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 150
Effective length of database: 12,643,995
Effective search space: 1896599250
Effective search space used: 1896599250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009833
(748 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_068593.2| 28S ribosomal protein S35, mitochondrial isofor... 417 e-117
Alignment gi|NP_001177793.1| 28S ribosomal protein S35, mitochondrial iso... 298 5e-85
>ref|NP_068593.2| 28S ribosomal protein S35, mitochondrial isoform 1 precursor [Homo
sapiens].
Length = 323
Score = 417 bits (1071), Expect = e-117
Identities = 204/238 (85%), Positives = 217/238 (91%)
Frame = +1
Query: 34 MAATSLPAWLILKPRAGTFRAFSTAMSPATRSPRPALRTTERTSKPERALRRKALPPRTE 213
MAA +LPAWL L+ RA T RAFSTA+ AT P P+L ERT ER RRKALPPRTE
Sbjct: 1 MAAAALPAWLSLQSRARTLRAFSTAVYSATPVPTPSL--PERTPGNERPPRRKALPPRTE 58
Query: 214 KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA 393
KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVK+GVPMAKEGNLELLKIPNFLHLTPVA
Sbjct: 59 KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVA 118
Query: 394 IKRHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSAGPSIRNPKARVVTLRVKLS 573
IK+HCEALKDFCTEWPAALDSDEKCEKHFPIEID+ DYVS+GPS+RNP+ARVV LRVKLS
Sbjct: 119 IKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRNPRARVVVLRVKLS 178
Query: 574 SLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKRQNYDYAVYLLTVLYHESWKT 747
SLNLDDHAKKKLIKLVG+RYCK+TDVLTIKTDRCPL+RQNYDYAVYLLTVLYHESW T
Sbjct: 179 SLNLDDHAKKKLIKLVGERYCKTTDVLTIKTDRCPLRRQNYDYAVYLLTVLYHESWNT 236
>ref|NP_001177793.1| 28S ribosomal protein S35, mitochondrial isoform 2 precursor [Homo
sapiens].
Length = 194
Score = 298 bits (764), Expect(2) = 5e-85
Identities = 148/184 (80%), Positives = 158/184 (85%)
Frame = +1
Query: 34 MAATSLPAWLILKPRAGTFRAFSTAMSPATRSPRPALRTTERTSKPERALRRKALPPRTE 213
MAA +LPAWL L+ RA T RAFSTA+ AT P P+L ERT ER RRKALPPRTE
Sbjct: 1 MAAAALPAWLSLQSRARTLRAFSTAVYSATPVPTPSL--PERTPGNERPPRRKALPPRTE 58
Query: 214 KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKRGVPMAKEGNLELLKIPNFLHLTPVA 393
KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVK+GVPMAKEGNLELLKIPNFLHLTPVA
Sbjct: 59 KMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVA 118
Query: 394 IKRHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSAGPSIRNPKARVVTLRVKLS 573
IK+HCEALKDFCTEWPAALDSDEKCEKHFPIEID+ DYVS+GPS+RNP+ARVV LRV
Sbjct: 119 IKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRNPRARVVVLRVPFK 178
Query: 574 SLNL 585
L
Sbjct: 179 EAEL 182
Score = 34.7 bits (78), Expect(2) = 5e-85
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3
Query: 669 QVPFKETEL*LCSISTNGFIP 731
+VPFKE EL LCS+STN IP
Sbjct: 174 RVPFKEAELRLCSVSTNSVIP 194
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 26,705,434
Number of extensions: 663326
Number of successful extensions: 1967
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1964
Number of HSP's successfully gapped: 3
Length of query: 249
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 149
Effective length of database: 15,000,764
Effective search space: 2235113836
Effective search space used: 2235113836
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009833
(748 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 337 5e-90
>Sscrofa_Chr05
|| Length = 111506441
Score = 337 bits (170), Expect = 5e-90
Identities = 170/170 (100%)
Strand = Plus / Minus
Query: 191 aggcactacctcctaggacagagaaaatggctgttgaccaagactggcctagtgtttacc 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49586653 aggcactacctcctaggacagagaaaatggctgttgaccaagactggcctagtgtttacc 49586594
Query: 251 cagttgcagcaccgtttaaaccttcagcggtacctcttcctgtccgaatgggttatccag 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49586593 cagttgcagcaccgtttaaaccttcagcggtacctcttcctgtccgaatgggttatccag 49586534
Query: 311 taaaaagaggggtgcccatggctaaggagggaaatcttgagcttttaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49586533 taaaaagaggggtgcccatggctaaggagggaaatcttgagcttttaaag 49586484
Score = 285 bits (144), Expect = 2e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 420 agatttttgtactgagtggccagctgccttagacagtgatgagaaatgcgagaagcactt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49575566 agatttttgtactgagtggccagctgccttagacagtgatgagaaatgcgagaagcactt 49575507
Query: 480 tccaattgaaattgatacagctgattatgtttcagcaggaccatctattcgaaaccccaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49575506 tccaattgaaattgatacagctgattatgtttcagcaggaccatctattcgaaaccccaa 49575447
Query: 540 agcacgagtagtaaccttaagggt 563
||||||||||||||||||||||||
Sbjct: 49575446 agcacgagtagtaaccttaagggt 49575423
Score = 283 bits (143), Expect = 7e-74
Identities = 146/147 (99%)
Strand = Plus / Minus
Query: 1 gcttgtcccctgccgcttgccgtctgcgcagacatggcggccacctcgctccctgcatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49591092 gcttgtcccctgccgcttgccgtctgcgcagacatggcggccacctcgctccctgcatgg 49591033
Query: 61 ctgatcctgaagccacgggccggtacctttcgtgccttttctacggctatgtctccggca 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49591032 ctgatcctgaagtcacgggccggtacctttcgtgccttttctacggctatgtctccggca 49590973
Query: 121 acacgctctccgagaccagccctgcgt 147
|||||||||||||||||||||||||||
Sbjct: 49590972 acacgctctccgagaccagccctgcgt 49590946
Score = 224 bits (113), Expect = 5e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 561 ggttaaactttccagtttgaatttagatgatcatgcaaagaagaaacttattaaacttgt 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49569071 ggttaaactttccagtttgaatttagatgatcatgcaaagaagaaacttattaaacttgt 49569012
Query: 621 aggagatcgatactgcaagagcacagatgtgcttaccatcaaaacagacaggt 673
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49569011 aggagatcgatactgcaagagcacagatgtgcttaccatcaaaacagacaggt 49568959
Score = 135 bits (68), Expect = 4e-29
Identities = 71/72 (98%)
Strand = Plus / Minus
Query: 670 aggtgccctttaaagagacagaattatgattatgcagtatatctactaacggttttatac 729
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 49566801 aggtgccctttaaagagacagaattatgattatgcagtatatctactaacagttttatac 49566742
Query: 730 catgagtcctgg 741
||||||||||||
Sbjct: 49566741 catgagtcctgg 49566730
Score = 125 bits (63), Expect = 4e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 359 agatccccaattttctgcatttgacccctgtagcaattaaaaggcactgtgaagctctta 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49584409 agatccccaattttctgcatttgacccctgtagcaattaaaaggcactgtgaagctctta 49584350
Query: 419 aag 421
|||
Sbjct: 49584349 aag 49584347
Score = 95.6 bits (48), Expect = 3e-17
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 146 gtacaacagaaagaacgtccaaacctgaaagggcactgagaagaaagg 193
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49587521 gtacaacagaaagaacgtccaaacctgaaagggcactgagaagaaagg 49587474
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,099,774
Number of extensions: 380
Number of successful extensions: 380
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 7
Length of query: 748
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 727
Effective length of database: 2,808,413,156
Effective search space: 2041716364412
Effective search space used: 2041716364412
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)