Animal-Genome cDNA 20110601C-009942


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009942
         (840 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001179029.1| NHL repeat-containing protein 3 [Bos taurus].     365   e-101
Alignment   gi|XP_002691842.1| PREDICTED: NHL repeat containing 3-like [Bos...   365   e-101

>ref|NP_001179029.1| NHL repeat-containing protein 3 [Bos taurus].
          Length = 351

 Score =  365 bits (936), Expect = e-101
 Identities = 172/197 (87%), Positives = 179/197 (90%)
 Frame = +2

Query: 227 MARFWVCVAGAGFFLAYLVLHSHICGSSLPLRLHFAFKFSWRAEEILYRLDVDWPTYSEY 406
           M RFWVC+AGAGFFLA LVLHS  C S LP  LH AFK SWRAEEILYRLDVDWP YSEY
Sbjct: 1   MTRFWVCIAGAGFFLALLVLHSRFCASRLPPHLHLAFKISWRAEEILYRLDVDWPKYSEY 60

Query: 407 FTGAIFCVAVDSLNELVYVAQRGDNIPKVLVFTEDGYFLRAWNYTVDTPHGIFAASTLHE 586
           FTGA FCVAVDSLN LVYV QRGDNIPKVLVFTEDGYFLR+WNYTVDTPHGIFAAST  E
Sbjct: 61  FTGATFCVAVDSLNGLVYVGQRGDNIPKVLVFTEDGYFLRSWNYTVDTPHGIFAASTPQE 120

Query: 587 QSVWITDVGSGSYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIY 766
           +SVWITDVGSG YGHT+KKYNSFGDLVQ+LGTPGKKGTGLNPLQFDNPAEL V+DTGDIY
Sbjct: 121 KSVWITDVGSGFYGHTIKKYNSFGDLVQVLGTPGKKGTGLNPLQFDNPAELHVDDTGDIY 180

Query: 767 IVDGDGGLNNRMIKLSQ 817
           IVDGDGGLNNR+IKLSQ
Sbjct: 181 IVDGDGGLNNRLIKLSQ 197


>ref|XP_002691842.1| PREDICTED: NHL repeat containing 3-like [Bos taurus].
          Length = 351

 Score =  365 bits (936), Expect = e-101
 Identities = 172/197 (87%), Positives = 179/197 (90%)
 Frame = +2

Query: 227 MARFWVCVAGAGFFLAYLVLHSHICGSSLPLRLHFAFKFSWRAEEILYRLDVDWPTYSEY 406
           M RFWVC+AGAGFFLA LVLHS  C S LP  LH AFK SWRAEEILYRLDVDWP YSEY
Sbjct: 1   MTRFWVCIAGAGFFLALLVLHSRFCASRLPPHLHLAFKISWRAEEILYRLDVDWPKYSEY 60

Query: 407 FTGAIFCVAVDSLNELVYVAQRGDNIPKVLVFTEDGYFLRAWNYTVDTPHGIFAASTLHE 586
           FTGA FCVAVDSLN LVYV QRGDNIPKVLVFTEDGYFLR+WNYTVDTPHGIFAAST  E
Sbjct: 61  FTGATFCVAVDSLNGLVYVGQRGDNIPKVLVFTEDGYFLRSWNYTVDTPHGIFAASTPQE 120

Query: 587 QSVWITDVGSGSYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIY 766
           +SVWITDVGSG YGHT+KKYNSFGDLVQ+LGTPGKKGTGLNPLQFDNPAEL V+DTGDIY
Sbjct: 121 KSVWITDVGSGFYGHTIKKYNSFGDLVQVLGTPGKKGTGLNPLQFDNPAELHVDDTGDIY 180

Query: 767 IVDGDGGLNNRMIKLSQ 817
           IVDGDGGLNNR+IKLSQ
Sbjct: 181 IVDGDGGLNNRLIKLSQ 197


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,378,404
Number of extensions: 931278
Number of successful extensions: 2148
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2148
Number of HSP's successfully gapped: 2
Length of query: 280
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 179
Effective length of database: 14,339,486
Effective search space: 2566767994
Effective search space used: 2566767994
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009942
         (840 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_543124.1| PREDICTED: similar to CG15105-PA, isoform A iso...   347   6e-96
Alignment   gi|XP_855640.1| PREDICTED: similar to CG15105-PA, isoform A iso...   224   8e-59

>ref|XP_543124.1| PREDICTED: similar to CG15105-PA, isoform A isoform 5 [Canis
           familiaris].
          Length = 347

 Score =  347 bits (891), Expect = 6e-96
 Identities = 165/197 (83%), Positives = 178/197 (90%)
 Frame = +2

Query: 227 MARFWVCVAGAGFFLAYLVLHSHICGSSLPLRLHFAFKFSWRAEEILYRLDVDWPTYSEY 406
           MARFWVC AGAGFFLA LVLHS   G+  P+   F+F+ SWR +EILYRLDV WP   EY
Sbjct: 1   MARFWVCAAGAGFFLALLVLHSRFGGA--PVLRKFSFQISWRTKEILYRLDVGWPKRPEY 58

Query: 407 FTGAIFCVAVDSLNELVYVAQRGDNIPKVLVFTEDGYFLRAWNYTVDTPHGIFAASTLHE 586
           FTG  FCVA+DSL+ LVYVAQRGDNIPKVLVFTEDGYFLR+WNYTVDTPHGIFAASTLHE
Sbjct: 59  FTGTTFCVAIDSLSGLVYVAQRGDNIPKVLVFTEDGYFLRSWNYTVDTPHGIFAASTLHE 118

Query: 587 QSVWITDVGSGSYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIY 766
           QSVWITDVGSGSYGHT+KKYNSFGDLVQ+LGTPG+KGTGLNPLQFDNPAEL+VEDTGDIY
Sbjct: 119 QSVWITDVGSGSYGHTIKKYNSFGDLVQVLGTPGEKGTGLNPLQFDNPAELYVEDTGDIY 178

Query: 767 IVDGDGGLNNRMIKLSQ 817
           IVDGDGGLNNR+IKLSQ
Sbjct: 179 IVDGDGGLNNRLIKLSQ 195


>ref|XP_855640.1| PREDICTED: similar to CG15105-PA, isoform A isoform 6 [Canis
           familiaris].
          Length = 280

 Score =  224 bits (571), Expect = 8e-59
 Identities = 114/183 (62%), Positives = 132/183 (72%)
 Frame = +2

Query: 227 MARFWVCVAGAGFFLAYLVLHSHICGSSLPLRLHFAFKFSWRAEEILYRLDVDWPTYSEY 406
           MARFWVC AGAGFFLA LVLHS   G+  P+   F+F+ SWR +EILYRLDV WP   EY
Sbjct: 1   MARFWVCAAGAGFFLALLVLHSRFGGA--PVLRKFSFQISWRTKEILYRLDVGWPKRPEY 58

Query: 407 FTGAIFCVAVDSLNELVYVAQRGDNIPKVLVFTEDGYFLRAWNYTVDTPHGIFAASTLHE 586
           FTG  FCVA+DSL+ LVYVAQRGDNIPKVLVFTEDGYFLR+WNYTVDTPHGIFAASTLHE
Sbjct: 59  FTGTTFCVAIDSLSGLVYVAQRGDNIPKVLVFTEDGYFLRSWNYTVDTPHGIFAASTLHE 118

Query: 587 QSVWITDVGSGSYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIY 766
           QSVWITDVGS                  +L   G++GTG  P +F+ P  + V+ T  ++
Sbjct: 119 QSVWITDVGSD---------------FMVLWLHGERGTG--PAKFNIPHSVTVDSTDRVW 161

Query: 767 IVD 775
           + D
Sbjct: 162 VAD 164


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,967,081
Number of extensions: 963522
Number of successful extensions: 2206
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2204
Number of HSP's successfully gapped: 2
Length of query: 280
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 179
Effective length of database: 15,507,568
Effective search space: 2775854672
Effective search space used: 2775854672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009942
         (840 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003130984.2| PREDICTED: hypothetical protein LOC100525123...   138   4e-33

>ref|XP_003130984.2| PREDICTED: hypothetical protein LOC100525123 [Sus scrofa].
          Length = 559

 Score =  138 bits (347), Expect = 4e-33
 Identities = 65/66 (98%), Positives = 66/66 (100%)
 Frame = +2

Query: 620 SYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIYIVDGDGGLNNR 799
           SYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIYIVDGDGGLNNR
Sbjct: 249 SYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIYIVDGDGGLNNR 308

Query: 800 MIKLSQ 817
           +IKLSQ
Sbjct: 309 LIKLSQ 314


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,499,999
Number of extensions: 598248
Number of successful extensions: 1401
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1401
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 182
Effective length of database: 8,904,026
Effective search space: 1620532732
Effective search space used: 1620532732
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009942
         (840 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_766089.1| NHL repeat-containing protein 3 precursor [Mus ...   324   4e-89

>ref|NP_766089.1| NHL repeat-containing protein 3 precursor [Mus musculus].
          Length = 347

 Score =  324 bits (831), Expect = 4e-89
 Identities = 154/197 (78%), Positives = 171/197 (86%)
 Frame = +2

Query: 227 MARFWVCVAGAGFFLAYLVLHSHICGSSLPLRLHFAFKFSWRAEEILYRLDVDWPTYSEY 406
           MAR WVC+AGA FFL+ LVLHS  CGS +     F+F  SWR E+ L+RLD+ WP  SEY
Sbjct: 1   MARAWVCLAGAAFFLSCLVLHSRFCGSLVSRT--FSFHVSWRMEDPLFRLDLGWPKNSEY 58

Query: 407 FTGAIFCVAVDSLNELVYVAQRGDNIPKVLVFTEDGYFLRAWNYTVDTPHGIFAASTLHE 586
           FTGA FCVAVDSLN LVYVAQRGDNIPKVLVF+EDGYFLRAWNYTVDTPHG+F + T  E
Sbjct: 59  FTGATFCVAVDSLNGLVYVAQRGDNIPKVLVFSEDGYFLRAWNYTVDTPHGMFVSGTPFE 118

Query: 587 QSVWITDVGSGSYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIY 766
           QSVWITDVGSG YGHTVKKYNS GDLVQ+LGTPGKKGTGLNPLQFDNPAEL+V+DTG++Y
Sbjct: 119 QSVWITDVGSGPYGHTVKKYNSLGDLVQVLGTPGKKGTGLNPLQFDNPAELYVDDTGEMY 178

Query: 767 IVDGDGGLNNRMIKLSQ 817
           IVDGDGGLNNR++KLSQ
Sbjct: 179 IVDGDGGLNNRLVKLSQ 195


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,150,313
Number of extensions: 806631
Number of successful extensions: 1922
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1919
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 180
Effective length of database: 12,613,959
Effective search space: 2270512620
Effective search space used: 2270512620
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009942
         (840 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001012772.1| NHL repeat-containing protein 3 isoform a [H...   350   1e-96
Alignment   gi|NP_001017370.1| NHL repeat-containing protein 3 isoform b [H...   232   4e-61

>ref|NP_001012772.1| NHL repeat-containing protein 3 isoform a [Homo sapiens].
          Length = 347

 Score =  350 bits (897), Expect = 1e-96
 Identities = 165/197 (83%), Positives = 178/197 (90%)
 Frame = +2

Query: 227 MARFWVCVAGAGFFLAYLVLHSHICGSSLPLRLHFAFKFSWRAEEILYRLDVDWPTYSEY 406
           MARFWVCVAGAGFFLA+LVLHS  CGS  P+  +F F  SWR E+ILYRLDV WP + EY
Sbjct: 1   MARFWVCVAGAGFFLAFLVLHSRFCGS--PVLRNFTFAVSWRTEKILYRLDVGWPKHPEY 58

Query: 407 FTGAIFCVAVDSLNELVYVAQRGDNIPKVLVFTEDGYFLRAWNYTVDTPHGIFAASTLHE 586
           FTG  FCVAVDSLN LVY+ QRGDNIPK+LVFTEDGYFLRAWNYTVDTPHGIFAASTL+E
Sbjct: 59  FTGTTFCVAVDSLNGLVYIGQRGDNIPKILVFTEDGYFLRAWNYTVDTPHGIFAASTLYE 118

Query: 587 QSVWITDVGSGSYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIY 766
           QSVWITDVGSG +GHTVKKY+SFGDLVQ+LGTPGKKGT LNPLQFDNPAEL+VEDTGDIY
Sbjct: 119 QSVWITDVGSGFFGHTVKKYSSFGDLVQVLGTPGKKGTSLNPLQFDNPAELYVEDTGDIY 178

Query: 767 IVDGDGGLNNRMIKLSQ 817
           IVDGDGGLNNR+IKLSQ
Sbjct: 179 IVDGDGGLNNRLIKLSQ 195


>ref|NP_001017370.1| NHL repeat-containing protein 3 isoform b [Homo sapiens].
          Length = 280

 Score =  232 bits (591), Expect = 4e-61
 Identities = 116/183 (63%), Positives = 133/183 (72%)
 Frame = +2

Query: 227 MARFWVCVAGAGFFLAYLVLHSHICGSSLPLRLHFAFKFSWRAEEILYRLDVDWPTYSEY 406
           MARFWVCVAGAGFFLA+LVLHS  CGS  P+  +F F  SWR E+ILYRLDV WP + EY
Sbjct: 1   MARFWVCVAGAGFFLAFLVLHSRFCGS--PVLRNFTFAVSWRTEKILYRLDVGWPKHPEY 58

Query: 407 FTGAIFCVAVDSLNELVYVAQRGDNIPKVLVFTEDGYFLRAWNYTVDTPHGIFAASTLHE 586
           FTG  FCVAVDSLN LVY+ QRGDNIPK+LVFTEDGYFLRAWNYTVDTPHGIFAASTL+E
Sbjct: 59  FTGTTFCVAVDSLNGLVYIGQRGDNIPKILVFTEDGYFLRAWNYTVDTPHGIFAASTLYE 118

Query: 587 QSVWITDVGSGSYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIY 766
           QSVWITDVGS                  IL   G+ GTG  P +F+ P  + ++  G ++
Sbjct: 119 QSVWITDVGSD---------------FMILWLHGENGTG--PAKFNIPHSVTLDSAGRVW 161

Query: 767 IVD 775
           + D
Sbjct: 162 VAD 164


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,252,079
Number of extensions: 949837
Number of successful extensions: 2217
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2212
Number of HSP's successfully gapped: 2
Length of query: 280
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 179
Effective length of database: 14,967,800
Effective search space: 2679236200
Effective search space used: 2679236200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-009942
         (840 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr11                                                         591   e-166

>Sscrofa_Chr11 
||          Length = 87690581

 Score =  591 bits (298), Expect = e-166
 Identities = 307/310 (99%)
 Strand = Plus / Minus

                                                                            
Query: 1        cgtgatgtgagggcgggggcgggaacgagttgggaacccaaaacctcagttctgattttc 60
                |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14266776 cgtgatatgagggcgggggcgggaacgagttgggaacccaaaacctcagttctgattttc 14266717

                                                                            
Query: 61       tgttacttgggtctctgctgccttttcgttctcgaaccccgcgcatccagggaaaggggt 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14266716 tgttacttgggtctctgctgccttttcgttctcgaaccccgcgcatccagggaaaggggt 14266657

                                                                            
Query: 121      ttggagctaggaactcgggaagcgactaagtgcgtggacttgaggctgtccggtggcccc 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14266656 ttggagctaggaactcgggaagcgactaagtgcgtggacttgaggctgtccggtggcccc 14266597

                                                                            
Query: 181      cagccgtctcccaatccttttccctcaccagacttcccgtctggtcatggcgagattctg 240
                |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14266596 cagccgcctgccaatccttttccctcaccagacttcccgtctggtcatggcgagattctg 14266537

                                                                            
Query: 241      ggtctgcgtagccggcgctggcttctttcttgcatatctggttttacattcgcatatttg 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14266536 ggtctgcgtagccggcgctggcttctttcttgcatatctggttttacattcgcatatttg 14266477

                          
Query: 301      tggctcttcg 310
                ||||||||||
Sbjct: 14266476 tggctcttcg 14266467



 Score =  389 bits (196), Expect = e-105
 Identities = 199/200 (99%)
 Strand = Plus / Minus

                                                                            
Query: 617      ggatcgtatggtcataccgttaaaaaatacaattcctttggtgatcttgttcaaattttg 676
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14263549 ggatcgtatggtcataccgttaaaaaatacaattcctttggtgatcttgttcaaattttg 14263490

                                                                            
Query: 677      ggaacaccaggcaaaaaaggcactggtttgaaccccttgcagtttgataaccctgcggaa 736
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14263489 ggaacaccaggcaaaaaaggcactggtttgaaccccttgcagtttgataaccctgcggaa 14263430

                                                                            
Query: 737      ttattcgtagaagacacgggagatatttacattgtagacggagatggaggattgaataac 796
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14263429 ttattcgtagaagacacgggagatatttacattgtagacggagatggaggattgaataac 14263370

                                    
Query: 797      agaatgatcaaattgtctca 816
                ||| ||||||||||||||||
Sbjct: 14263369 agattgatcaaattgtctca 14263350



 Score =  295 bits (149), Expect = 2e-77
 Identities = 149/149 (100%)
 Strand = Plus / Minus

                                                                            
Query: 470      agaggggataacatcccaaaggtattagtgttcacagaggatggatatttcctacgagcc 529
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14265866 agaggggataacatcccaaaggtattagtgttcacagaggatggatatttcctacgagcc 14265807

                                                                            
Query: 530      tggaattacacagttgacacacctcatggcatatttgcagccagtacactacatgaacaa 589
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14265806 tggaattacacagttgacacacctcatggcatatttgcagccagtacactacatgaacaa 14265747

                                             
Query: 590      tccgtctggatcacggatgtaggaagtgg 618
                |||||||||||||||||||||||||||||
Sbjct: 14265746 tccgtctggatcacggatgtaggaagtgg 14265718



 Score =  141 bits (71), Expect = 7e-31
 Identities = 78/79 (98%), Gaps = 1/79 (1%)
 Strand = Plus / Minus

                                                                            
Query: 310      gctcccactacgtcttcattttgctttt-aaattttcctggagagctgaggaaatccttt 368
                |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 14266283 gctcccactacgtcttcattttgctttttaaattttcctggagagctgaggaaatccttt 14266224

                                   
Query: 369      accggctggatgtggattg 387
                |||||||||||||||||||
Sbjct: 14266223 accggctggatgtggattg 14266205


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,279,347
Number of extensions: 155
Number of successful extensions: 155
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 4
Length of query: 840
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 819
Effective length of database: 2,808,413,156
Effective search space: 2300090374764
Effective search space used: 2300090374764
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)