Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009942
(840 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179029.1| NHL repeat-containing protein 3 [Bos taurus]. 365 e-101
Alignment gi|XP_002691842.1| PREDICTED: NHL repeat containing 3-like [Bos... 365 e-101
>ref|NP_001179029.1| NHL repeat-containing protein 3 [Bos taurus].
Length = 351
Score = 365 bits (936), Expect = e-101
Identities = 172/197 (87%), Positives = 179/197 (90%)
Frame = +2
Query: 227 MARFWVCVAGAGFFLAYLVLHSHICGSSLPLRLHFAFKFSWRAEEILYRLDVDWPTYSEY 406
M RFWVC+AGAGFFLA LVLHS C S LP LH AFK SWRAEEILYRLDVDWP YSEY
Sbjct: 1 MTRFWVCIAGAGFFLALLVLHSRFCASRLPPHLHLAFKISWRAEEILYRLDVDWPKYSEY 60
Query: 407 FTGAIFCVAVDSLNELVYVAQRGDNIPKVLVFTEDGYFLRAWNYTVDTPHGIFAASTLHE 586
FTGA FCVAVDSLN LVYV QRGDNIPKVLVFTEDGYFLR+WNYTVDTPHGIFAAST E
Sbjct: 61 FTGATFCVAVDSLNGLVYVGQRGDNIPKVLVFTEDGYFLRSWNYTVDTPHGIFAASTPQE 120
Query: 587 QSVWITDVGSGSYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIY 766
+SVWITDVGSG YGHT+KKYNSFGDLVQ+LGTPGKKGTGLNPLQFDNPAEL V+DTGDIY
Sbjct: 121 KSVWITDVGSGFYGHTIKKYNSFGDLVQVLGTPGKKGTGLNPLQFDNPAELHVDDTGDIY 180
Query: 767 IVDGDGGLNNRMIKLSQ 817
IVDGDGGLNNR+IKLSQ
Sbjct: 181 IVDGDGGLNNRLIKLSQ 197
>ref|XP_002691842.1| PREDICTED: NHL repeat containing 3-like [Bos taurus].
Length = 351
Score = 365 bits (936), Expect = e-101
Identities = 172/197 (87%), Positives = 179/197 (90%)
Frame = +2
Query: 227 MARFWVCVAGAGFFLAYLVLHSHICGSSLPLRLHFAFKFSWRAEEILYRLDVDWPTYSEY 406
M RFWVC+AGAGFFLA LVLHS C S LP LH AFK SWRAEEILYRLDVDWP YSEY
Sbjct: 1 MTRFWVCIAGAGFFLALLVLHSRFCASRLPPHLHLAFKISWRAEEILYRLDVDWPKYSEY 60
Query: 407 FTGAIFCVAVDSLNELVYVAQRGDNIPKVLVFTEDGYFLRAWNYTVDTPHGIFAASTLHE 586
FTGA FCVAVDSLN LVYV QRGDNIPKVLVFTEDGYFLR+WNYTVDTPHGIFAAST E
Sbjct: 61 FTGATFCVAVDSLNGLVYVGQRGDNIPKVLVFTEDGYFLRSWNYTVDTPHGIFAASTPQE 120
Query: 587 QSVWITDVGSGSYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIY 766
+SVWITDVGSG YGHT+KKYNSFGDLVQ+LGTPGKKGTGLNPLQFDNPAEL V+DTGDIY
Sbjct: 121 KSVWITDVGSGFYGHTIKKYNSFGDLVQVLGTPGKKGTGLNPLQFDNPAELHVDDTGDIY 180
Query: 767 IVDGDGGLNNRMIKLSQ 817
IVDGDGGLNNR+IKLSQ
Sbjct: 181 IVDGDGGLNNRLIKLSQ 197
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,378,404
Number of extensions: 931278
Number of successful extensions: 2148
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2148
Number of HSP's successfully gapped: 2
Length of query: 280
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 179
Effective length of database: 14,339,486
Effective search space: 2566767994
Effective search space used: 2566767994
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009942
(840 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543124.1| PREDICTED: similar to CG15105-PA, isoform A iso... 347 6e-96
Alignment gi|XP_855640.1| PREDICTED: similar to CG15105-PA, isoform A iso... 224 8e-59
>ref|XP_543124.1| PREDICTED: similar to CG15105-PA, isoform A isoform 5 [Canis
familiaris].
Length = 347
Score = 347 bits (891), Expect = 6e-96
Identities = 165/197 (83%), Positives = 178/197 (90%)
Frame = +2
Query: 227 MARFWVCVAGAGFFLAYLVLHSHICGSSLPLRLHFAFKFSWRAEEILYRLDVDWPTYSEY 406
MARFWVC AGAGFFLA LVLHS G+ P+ F+F+ SWR +EILYRLDV WP EY
Sbjct: 1 MARFWVCAAGAGFFLALLVLHSRFGGA--PVLRKFSFQISWRTKEILYRLDVGWPKRPEY 58
Query: 407 FTGAIFCVAVDSLNELVYVAQRGDNIPKVLVFTEDGYFLRAWNYTVDTPHGIFAASTLHE 586
FTG FCVA+DSL+ LVYVAQRGDNIPKVLVFTEDGYFLR+WNYTVDTPHGIFAASTLHE
Sbjct: 59 FTGTTFCVAIDSLSGLVYVAQRGDNIPKVLVFTEDGYFLRSWNYTVDTPHGIFAASTLHE 118
Query: 587 QSVWITDVGSGSYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIY 766
QSVWITDVGSGSYGHT+KKYNSFGDLVQ+LGTPG+KGTGLNPLQFDNPAEL+VEDTGDIY
Sbjct: 119 QSVWITDVGSGSYGHTIKKYNSFGDLVQVLGTPGEKGTGLNPLQFDNPAELYVEDTGDIY 178
Query: 767 IVDGDGGLNNRMIKLSQ 817
IVDGDGGLNNR+IKLSQ
Sbjct: 179 IVDGDGGLNNRLIKLSQ 195
>ref|XP_855640.1| PREDICTED: similar to CG15105-PA, isoform A isoform 6 [Canis
familiaris].
Length = 280
Score = 224 bits (571), Expect = 8e-59
Identities = 114/183 (62%), Positives = 132/183 (72%)
Frame = +2
Query: 227 MARFWVCVAGAGFFLAYLVLHSHICGSSLPLRLHFAFKFSWRAEEILYRLDVDWPTYSEY 406
MARFWVC AGAGFFLA LVLHS G+ P+ F+F+ SWR +EILYRLDV WP EY
Sbjct: 1 MARFWVCAAGAGFFLALLVLHSRFGGA--PVLRKFSFQISWRTKEILYRLDVGWPKRPEY 58
Query: 407 FTGAIFCVAVDSLNELVYVAQRGDNIPKVLVFTEDGYFLRAWNYTVDTPHGIFAASTLHE 586
FTG FCVA+DSL+ LVYVAQRGDNIPKVLVFTEDGYFLR+WNYTVDTPHGIFAASTLHE
Sbjct: 59 FTGTTFCVAIDSLSGLVYVAQRGDNIPKVLVFTEDGYFLRSWNYTVDTPHGIFAASTLHE 118
Query: 587 QSVWITDVGSGSYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIY 766
QSVWITDVGS +L G++GTG P +F+ P + V+ T ++
Sbjct: 119 QSVWITDVGSD---------------FMVLWLHGERGTG--PAKFNIPHSVTVDSTDRVW 161
Query: 767 IVD 775
+ D
Sbjct: 162 VAD 164
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,967,081
Number of extensions: 963522
Number of successful extensions: 2206
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2204
Number of HSP's successfully gapped: 2
Length of query: 280
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 179
Effective length of database: 15,507,568
Effective search space: 2775854672
Effective search space used: 2775854672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009942
(840 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130984.2| PREDICTED: hypothetical protein LOC100525123... 138 4e-33
>ref|XP_003130984.2| PREDICTED: hypothetical protein LOC100525123 [Sus scrofa].
Length = 559
Score = 138 bits (347), Expect = 4e-33
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +2
Query: 620 SYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIYIVDGDGGLNNR 799
SYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIYIVDGDGGLNNR
Sbjct: 249 SYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIYIVDGDGGLNNR 308
Query: 800 MIKLSQ 817
+IKLSQ
Sbjct: 309 LIKLSQ 314
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,499,999
Number of extensions: 598248
Number of successful extensions: 1401
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1401
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 182
Effective length of database: 8,904,026
Effective search space: 1620532732
Effective search space used: 1620532732
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009942
(840 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_766089.1| NHL repeat-containing protein 3 precursor [Mus ... 324 4e-89
>ref|NP_766089.1| NHL repeat-containing protein 3 precursor [Mus musculus].
Length = 347
Score = 324 bits (831), Expect = 4e-89
Identities = 154/197 (78%), Positives = 171/197 (86%)
Frame = +2
Query: 227 MARFWVCVAGAGFFLAYLVLHSHICGSSLPLRLHFAFKFSWRAEEILYRLDVDWPTYSEY 406
MAR WVC+AGA FFL+ LVLHS CGS + F+F SWR E+ L+RLD+ WP SEY
Sbjct: 1 MARAWVCLAGAAFFLSCLVLHSRFCGSLVSRT--FSFHVSWRMEDPLFRLDLGWPKNSEY 58
Query: 407 FTGAIFCVAVDSLNELVYVAQRGDNIPKVLVFTEDGYFLRAWNYTVDTPHGIFAASTLHE 586
FTGA FCVAVDSLN LVYVAQRGDNIPKVLVF+EDGYFLRAWNYTVDTPHG+F + T E
Sbjct: 59 FTGATFCVAVDSLNGLVYVAQRGDNIPKVLVFSEDGYFLRAWNYTVDTPHGMFVSGTPFE 118
Query: 587 QSVWITDVGSGSYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIY 766
QSVWITDVGSG YGHTVKKYNS GDLVQ+LGTPGKKGTGLNPLQFDNPAEL+V+DTG++Y
Sbjct: 119 QSVWITDVGSGPYGHTVKKYNSLGDLVQVLGTPGKKGTGLNPLQFDNPAELYVDDTGEMY 178
Query: 767 IVDGDGGLNNRMIKLSQ 817
IVDGDGGLNNR++KLSQ
Sbjct: 179 IVDGDGGLNNRLVKLSQ 195
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,150,313
Number of extensions: 806631
Number of successful extensions: 1922
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1919
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 180
Effective length of database: 12,613,959
Effective search space: 2270512620
Effective search space used: 2270512620
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009942
(840 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001012772.1| NHL repeat-containing protein 3 isoform a [H... 350 1e-96
Alignment gi|NP_001017370.1| NHL repeat-containing protein 3 isoform b [H... 232 4e-61
>ref|NP_001012772.1| NHL repeat-containing protein 3 isoform a [Homo sapiens].
Length = 347
Score = 350 bits (897), Expect = 1e-96
Identities = 165/197 (83%), Positives = 178/197 (90%)
Frame = +2
Query: 227 MARFWVCVAGAGFFLAYLVLHSHICGSSLPLRLHFAFKFSWRAEEILYRLDVDWPTYSEY 406
MARFWVCVAGAGFFLA+LVLHS CGS P+ +F F SWR E+ILYRLDV WP + EY
Sbjct: 1 MARFWVCVAGAGFFLAFLVLHSRFCGS--PVLRNFTFAVSWRTEKILYRLDVGWPKHPEY 58
Query: 407 FTGAIFCVAVDSLNELVYVAQRGDNIPKVLVFTEDGYFLRAWNYTVDTPHGIFAASTLHE 586
FTG FCVAVDSLN LVY+ QRGDNIPK+LVFTEDGYFLRAWNYTVDTPHGIFAASTL+E
Sbjct: 59 FTGTTFCVAVDSLNGLVYIGQRGDNIPKILVFTEDGYFLRAWNYTVDTPHGIFAASTLYE 118
Query: 587 QSVWITDVGSGSYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIY 766
QSVWITDVGSG +GHTVKKY+SFGDLVQ+LGTPGKKGT LNPLQFDNPAEL+VEDTGDIY
Sbjct: 119 QSVWITDVGSGFFGHTVKKYSSFGDLVQVLGTPGKKGTSLNPLQFDNPAELYVEDTGDIY 178
Query: 767 IVDGDGGLNNRMIKLSQ 817
IVDGDGGLNNR+IKLSQ
Sbjct: 179 IVDGDGGLNNRLIKLSQ 195
>ref|NP_001017370.1| NHL repeat-containing protein 3 isoform b [Homo sapiens].
Length = 280
Score = 232 bits (591), Expect = 4e-61
Identities = 116/183 (63%), Positives = 133/183 (72%)
Frame = +2
Query: 227 MARFWVCVAGAGFFLAYLVLHSHICGSSLPLRLHFAFKFSWRAEEILYRLDVDWPTYSEY 406
MARFWVCVAGAGFFLA+LVLHS CGS P+ +F F SWR E+ILYRLDV WP + EY
Sbjct: 1 MARFWVCVAGAGFFLAFLVLHSRFCGS--PVLRNFTFAVSWRTEKILYRLDVGWPKHPEY 58
Query: 407 FTGAIFCVAVDSLNELVYVAQRGDNIPKVLVFTEDGYFLRAWNYTVDTPHGIFAASTLHE 586
FTG FCVAVDSLN LVY+ QRGDNIPK+LVFTEDGYFLRAWNYTVDTPHGIFAASTL+E
Sbjct: 59 FTGTTFCVAVDSLNGLVYIGQRGDNIPKILVFTEDGYFLRAWNYTVDTPHGIFAASTLYE 118
Query: 587 QSVWITDVGSGSYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIY 766
QSVWITDVGS IL G+ GTG P +F+ P + ++ G ++
Sbjct: 119 QSVWITDVGSD---------------FMILWLHGENGTG--PAKFNIPHSVTLDSAGRVW 161
Query: 767 IVD 775
+ D
Sbjct: 162 VAD 164
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,252,079
Number of extensions: 949837
Number of successful extensions: 2217
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2212
Number of HSP's successfully gapped: 2
Length of query: 280
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 179
Effective length of database: 14,967,800
Effective search space: 2679236200
Effective search space used: 2679236200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009942
(840 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 591 e-166
>Sscrofa_Chr11
|| Length = 87690581
Score = 591 bits (298), Expect = e-166
Identities = 307/310 (99%)
Strand = Plus / Minus
Query: 1 cgtgatgtgagggcgggggcgggaacgagttgggaacccaaaacctcagttctgattttc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14266776 cgtgatatgagggcgggggcgggaacgagttgggaacccaaaacctcagttctgattttc 14266717
Query: 61 tgttacttgggtctctgctgccttttcgttctcgaaccccgcgcatccagggaaaggggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14266716 tgttacttgggtctctgctgccttttcgttctcgaaccccgcgcatccagggaaaggggt 14266657
Query: 121 ttggagctaggaactcgggaagcgactaagtgcgtggacttgaggctgtccggtggcccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14266656 ttggagctaggaactcgggaagcgactaagtgcgtggacttgaggctgtccggtggcccc 14266597
Query: 181 cagccgtctcccaatccttttccctcaccagacttcccgtctggtcatggcgagattctg 240
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14266596 cagccgcctgccaatccttttccctcaccagacttcccgtctggtcatggcgagattctg 14266537
Query: 241 ggtctgcgtagccggcgctggcttctttcttgcatatctggttttacattcgcatatttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14266536 ggtctgcgtagccggcgctggcttctttcttgcatatctggttttacattcgcatatttg 14266477
Query: 301 tggctcttcg 310
||||||||||
Sbjct: 14266476 tggctcttcg 14266467
Score = 389 bits (196), Expect = e-105
Identities = 199/200 (99%)
Strand = Plus / Minus
Query: 617 ggatcgtatggtcataccgttaaaaaatacaattcctttggtgatcttgttcaaattttg 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14263549 ggatcgtatggtcataccgttaaaaaatacaattcctttggtgatcttgttcaaattttg 14263490
Query: 677 ggaacaccaggcaaaaaaggcactggtttgaaccccttgcagtttgataaccctgcggaa 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14263489 ggaacaccaggcaaaaaaggcactggtttgaaccccttgcagtttgataaccctgcggaa 14263430
Query: 737 ttattcgtagaagacacgggagatatttacattgtagacggagatggaggattgaataac 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14263429 ttattcgtagaagacacgggagatatttacattgtagacggagatggaggattgaataac 14263370
Query: 797 agaatgatcaaattgtctca 816
||| ||||||||||||||||
Sbjct: 14263369 agattgatcaaattgtctca 14263350
Score = 295 bits (149), Expect = 2e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 470 agaggggataacatcccaaaggtattagtgttcacagaggatggatatttcctacgagcc 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14265866 agaggggataacatcccaaaggtattagtgttcacagaggatggatatttcctacgagcc 14265807
Query: 530 tggaattacacagttgacacacctcatggcatatttgcagccagtacactacatgaacaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14265806 tggaattacacagttgacacacctcatggcatatttgcagccagtacactacatgaacaa 14265747
Query: 590 tccgtctggatcacggatgtaggaagtgg 618
|||||||||||||||||||||||||||||
Sbjct: 14265746 tccgtctggatcacggatgtaggaagtgg 14265718
Score = 141 bits (71), Expect = 7e-31
Identities = 78/79 (98%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 310 gctcccactacgtcttcattttgctttt-aaattttcctggagagctgaggaaatccttt 368
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 14266283 gctcccactacgtcttcattttgctttttaaattttcctggagagctgaggaaatccttt 14266224
Query: 369 accggctggatgtggattg 387
|||||||||||||||||||
Sbjct: 14266223 accggctggatgtggattg 14266205
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,279,347
Number of extensions: 155
Number of successful extensions: 155
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 4
Length of query: 840
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 819
Effective length of database: 2,808,413,156
Effective search space: 2300090374764
Effective search space used: 2300090374764
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)