Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009994
(1136 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002686279.1| PREDICTED: transforming growth factor, beta ... 391 e-109
Alignment gi|XP_001253072.1| PREDICTED: transforming growth factor, beta ... 391 e-109
>ref|XP_002686279.1| PREDICTED: transforming growth factor, beta receptor III [Bos
taurus].
Length = 858
Score = 391 bits (1004), Expect = e-109
Identities = 190/208 (91%), Positives = 198/208 (95%)
Frame = +3
Query: 504 LATAGPEPGVQCALSPVNASHPVQALMESFTVLSGCASRGTMGRPQEVHVLNLRAADQGP 683
+ +AGPEP QC LSPVNASHPVQALMESFT LSGCASRGT+G PQEVHVLNLRAADQGP
Sbjct: 26 IPSAGPEPRAQCELSPVNASHPVQALMESFTALSGCASRGTVGLPQEVHVLNLRAADQGP 85
Query: 684 GQPQSEVTLHLNPISSVHIHHKPVVFLLNSPQPLVWHLKTERLAVGVSRLFLVSEGSVVH 863
GQPQ EVTLHLNPISSVHIHHKPVVFLLNSPQPLVWHLKTERLA GVSRLFLVSEGS+VH
Sbjct: 86 GQPQREVTLHLNPISSVHIHHKPVVFLLNSPQPLVWHLKTERLAAGVSRLFLVSEGSLVH 145
Query: 864 FSSGNFSLSAETEERNFPHGNEHLLNWARKEYGAVTSFTELKIARNIYIKVGEDQVFPPT 1043
FSS NFSLSAETEER+FPHGNEHLLNWARKEYGAVTSFTELKIARNIYIKVGEDQVFPPT
Sbjct: 146 FSSRNFSLSAETEERSFPHGNEHLLNWARKEYGAVTSFTELKIARNIYIKVGEDQVFPPT 205
Query: 1044 CSIGKNFLSLNYLAEYLQPKPAKGCVVS 1127
C+IGKNFLSLNYLAEYLQPK A+GCV+S
Sbjct: 206 CNIGKNFLSLNYLAEYLQPKAAEGCVMS 233
>ref|XP_001253072.1| PREDICTED: transforming growth factor, beta receptor III [Bos
taurus].
Length = 858
Score = 391 bits (1004), Expect = e-109
Identities = 190/208 (91%), Positives = 198/208 (95%)
Frame = +3
Query: 504 LATAGPEPGVQCALSPVNASHPVQALMESFTVLSGCASRGTMGRPQEVHVLNLRAADQGP 683
+ +AGPEP QC LSPVNASHPVQALMESFT LSGCASRGT+G PQEVHVLNLRAADQGP
Sbjct: 26 IPSAGPEPRAQCELSPVNASHPVQALMESFTALSGCASRGTVGLPQEVHVLNLRAADQGP 85
Query: 684 GQPQSEVTLHLNPISSVHIHHKPVVFLLNSPQPLVWHLKTERLAVGVSRLFLVSEGSVVH 863
GQPQ EVTLHLNPISSVHIHHKPVVFLLNSPQPLVWHLKTERLA GVSRLFLVSEGS+VH
Sbjct: 86 GQPQREVTLHLNPISSVHIHHKPVVFLLNSPQPLVWHLKTERLAAGVSRLFLVSEGSLVH 145
Query: 864 FSSGNFSLSAETEERNFPHGNEHLLNWARKEYGAVTSFTELKIARNIYIKVGEDQVFPPT 1043
FSS NFSLSAETEER+FPHGNEHLLNWARKEYGAVTSFTELKIARNIYIKVGEDQVFPPT
Sbjct: 146 FSSRNFSLSAETEERSFPHGNEHLLNWARKEYGAVTSFTELKIARNIYIKVGEDQVFPPT 205
Query: 1044 CSIGKNFLSLNYLAEYLQPKPAKGCVVS 1127
C+IGKNFLSLNYLAEYLQPK A+GCV+S
Sbjct: 206 CNIGKNFLSLNYLAEYLQPKAAEGCVMS 233
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,904,233
Number of extensions: 1417292
Number of successful extensions: 5575
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5557
Number of HSP's successfully gapped: 2
Length of query: 378
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 274
Effective length of database: 14,240,222
Effective search space: 3901820828
Effective search space used: 3901820828
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009994
(1136 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547284.2| PREDICTED: similar to TGF-beta receptor type II... 379 e-105
>ref|XP_547284.2| PREDICTED: similar to TGF-beta receptor type III precursor (TGFR-3)
(Transforming growth factor beta receptor III)
(Betaglycan) [Canis familiaris].
Length = 928
Score = 379 bits (974), Expect = e-105
Identities = 185/203 (91%), Positives = 191/203 (94%)
Frame = +3
Query: 519 PEPGVQCALSPVNASHPVQALMESFTVLSGCASRGTMGRPQEVHVLNLRAADQGPGQPQS 698
PEP QC LSPVNASHPVQALMESFTVLSGCASRGT G PQEVHVLNLR AD G GQPQ
Sbjct: 102 PEPSTQCELSPVNASHPVQALMESFTVLSGCASRGTTGLPQEVHVLNLRTADPGLGQPQR 161
Query: 699 EVTLHLNPISSVHIHHKPVVFLLNSPQPLVWHLKTERLAVGVSRLFLVSEGSVVHFSSGN 878
EVTLHLNPISSVHIHHKPVVFLLNSPQPLVWHLKTERLAVGVSRLFLVS+GS V FSSGN
Sbjct: 162 EVTLHLNPISSVHIHHKPVVFLLNSPQPLVWHLKTERLAVGVSRLFLVSQGSTVQFSSGN 221
Query: 879 FSLSAETEERNFPHGNEHLLNWARKEYGAVTSFTELKIARNIYIKVGEDQVFPPTCSIGK 1058
FSLSAETEER+FPHGNEHLLNWA+KEYGAVTSFTELKIARNIYIKVGEDQVFPPTC+IGK
Sbjct: 222 FSLSAETEERSFPHGNEHLLNWAQKEYGAVTSFTELKIARNIYIKVGEDQVFPPTCNIGK 281
Query: 1059 NFLSLNYLAEYLQPKPAKGCVVS 1127
NFLSLNYLAEYLQPK A+GCV+S
Sbjct: 282 NFLSLNYLAEYLQPKAAEGCVIS 304
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,039,242
Number of extensions: 1457601
Number of successful extensions: 5755
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5742
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 274
Effective length of database: 15,407,560
Effective search space: 4221671440
Effective search space used: 4221671440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009994
(1136 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999437.1| transforming growth factor beta receptor type 3... 453 e-128
>ref|NP_999437.1| transforming growth factor beta receptor type 3 precursor [Sus
scrofa].
Length = 848
Score = 453 bits (1165), Expect = e-128
Identities = 223/225 (99%), Positives = 224/225 (99%)
Frame = +3
Query: 456 MTLHCVVALFALISSCLATAGPEPGVQCALSPVNASHPVQALMESFTVLSGCASRGTMGR 635
MTLHCVVALFALISSCLATAGPEPGVQCALSPVNASHPVQALMESFTVLSGCASRGTMGR
Sbjct: 1 MTLHCVVALFALISSCLATAGPEPGVQCALSPVNASHPVQALMESFTVLSGCASRGTMGR 60
Query: 636 PQEVHVLNLRAADQGPGQPQSEVTLHLNPISSVHIHHKPVVFLLNSPQPLVWHLKTERLA 815
PQEVHVLNLRAADQGPGQ QSEVTLHLNPISSVHIHHKPVVFLLNSPQPLVWHLKTERLA
Sbjct: 61 PQEVHVLNLRAADQGPGQRQSEVTLHLNPISSVHIHHKPVVFLLNSPQPLVWHLKTERLA 120
Query: 816 VGVSRLFLVSEGSVVHFSSGNFSLSAETEERNFPHGNEHLLNWARKEYGAVTSFTELKIA 995
VGVSRLFLVSEGSVVHFSSGNFSLSAETEERNFPHGNEHLLNWARKEYGAVTSFTELKIA
Sbjct: 121 VGVSRLFLVSEGSVVHFSSGNFSLSAETEERNFPHGNEHLLNWARKEYGAVTSFTELKIA 180
Query: 996 RNIYIKVGEDQVFPPTCSIGKNFLSLNYLAEYLQPKPAKGCVVSG 1130
RNIYIKVGEDQVFPPTCSIGKNFLSLNYLAEYLQPKPA+GCVVSG
Sbjct: 181 RNIYIKVGEDQVFPPTCSIGKNFLSLNYLAEYLQPKPAEGCVVSG 225
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,995,322
Number of extensions: 918772
Number of successful extensions: 3814
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3806
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 277
Effective length of database: 8,829,335
Effective search space: 2445725795
Effective search space used: 2445725795
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009994
(1136 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035708.2| transforming growth factor beta receptor type 3... 382 e-106
>ref|NP_035708.2| transforming growth factor beta receptor type 3 precursor [Mus
musculus].
Length = 850
Score = 382 bits (982), Expect = e-106
Identities = 184/224 (82%), Positives = 205/224 (91%)
Frame = +3
Query: 456 MTLHCVVALFALISSCLATAGPEPGVQCALSPVNASHPVQALMESFTVLSGCASRGTMGR 635
+T H +V +F L+S+CLATAGPEP +C LSP++ASHPVQALMESFTVLSGCASRGT G
Sbjct: 3 VTSHHMVPVFVLMSACLATAGPEPSTRCELSPISASHPVQALMESFTVLSGCASRGTTGL 62
Query: 636 PQEVHVLNLRAADQGPGQPQSEVTLHLNPISSVHIHHKPVVFLLNSPQPLVWHLKTERLA 815
P+EVH+LNLR+ DQG GQPQ EVTLHLNPI+SVH HHKPVVFLLNSPQPLVWH+KTERLA
Sbjct: 63 PREVHILNLRSTDQGLGQPQREVTLHLNPIASVHTHHKPVVFLLNSPQPLVWHVKTERLA 122
Query: 816 VGVSRLFLVSEGSVVHFSSGNFSLSAETEERNFPHGNEHLLNWARKEYGAVTSFTELKIA 995
GV RLFLVSEGSVV FSSGNFSL+AETEER+FP NEHLL+WA+KEYGAVTSFTELKIA
Sbjct: 123 AGVPRLFLVSEGSVVQFSSGNFSLTAETEERSFPQENEHLLHWAQKEYGAVTSFTELKIA 182
Query: 996 RNIYIKVGEDQVFPPTCSIGKNFLSLNYLAEYLQPKPAKGCVVS 1127
RNIYIKVGEDQVFPPTC+IGKNFLSLNYLAEYLQPK A+GCV++
Sbjct: 183 RNIYIKVGEDQVFPPTCNIGKNFLSLNYLAEYLQPKAAEGCVLA 226
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,984,001
Number of extensions: 1170402
Number of successful extensions: 4473
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4465
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 275
Effective length of database: 12,523,851
Effective search space: 3444059025
Effective search space used: 3444059025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009994
(1136 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001182612.1| transforming growth factor beta receptor typ... 401 e-112
Alignment gi|NP_003234.2| transforming growth factor beta receptor type 3... 401 e-112
Alignment gi|NP_001182613.1| transforming growth factor beta receptor typ... 401 e-112
>ref|NP_001182612.1| transforming growth factor beta receptor type 3 isoform b [Homo
sapiens].
Length = 850
Score = 401 bits (1031), Expect = e-112
Identities = 198/224 (88%), Positives = 206/224 (91%)
Frame = +3
Query: 456 MTLHCVVALFALISSCLATAGPEPGVQCALSPVNASHPVQALMESFTVLSGCASRGTMGR 635
MT H V+A+FAL+SSCLATAGPEPG C LSPV+ASHPVQALMESFTVLSGCASRGT G
Sbjct: 1 MTSHYVIAIFALMSSCLATAGPEPGALCELSPVSASHPVQALMESFTVLSGCASRGTTGL 60
Query: 636 PQEVHVLNLRAADQGPGQPQSEVTLHLNPISSVHIHHKPVVFLLNSPQPLVWHLKTERLA 815
PQEVHVLNLR A QGPGQ Q EVTLHLNPISSVHIHHK VVFLLNSP PLVWHLKTERLA
Sbjct: 61 PQEVHVLNLRTAGQGPGQLQREVTLHLNPISSVHIHHKSVVFLLNSPHPLVWHLKTERLA 120
Query: 816 VGVSRLFLVSEGSVVHFSSGNFSLSAETEERNFPHGNEHLLNWARKEYGAVTSFTELKIA 995
GVSRLFLVSEGSVV FSS NFSL+AETEERNFPHGNEHLLNWARKEYGAVTSFTELKIA
Sbjct: 121 TGVSRLFLVSEGSVVQFSSANFSLTAETEERNFPHGNEHLLNWARKEYGAVTSFTELKIA 180
Query: 996 RNIYIKVGEDQVFPPTCSIGKNFLSLNYLAEYLQPKPAKGCVVS 1127
RNIYIKVGEDQVFPP C+IGKNFLSLNYLAEYLQPK A+GCV+S
Sbjct: 181 RNIYIKVGEDQVFPPKCNIGKNFLSLNYLAEYLQPKAAEGCVMS 224
>ref|NP_003234.2| transforming growth factor beta receptor type 3 isoform a [Homo
sapiens].
Length = 851
Score = 401 bits (1031), Expect = e-112
Identities = 198/224 (88%), Positives = 206/224 (91%)
Frame = +3
Query: 456 MTLHCVVALFALISSCLATAGPEPGVQCALSPVNASHPVQALMESFTVLSGCASRGTMGR 635
MT H V+A+FAL+SSCLATAGPEPG C LSPV+ASHPVQALMESFTVLSGCASRGT G
Sbjct: 1 MTSHYVIAIFALMSSCLATAGPEPGALCELSPVSASHPVQALMESFTVLSGCASRGTTGL 60
Query: 636 PQEVHVLNLRAADQGPGQPQSEVTLHLNPISSVHIHHKPVVFLLNSPQPLVWHLKTERLA 815
PQEVHVLNLR A QGPGQ Q EVTLHLNPISSVHIHHK VVFLLNSP PLVWHLKTERLA
Sbjct: 61 PQEVHVLNLRTAGQGPGQLQREVTLHLNPISSVHIHHKSVVFLLNSPHPLVWHLKTERLA 120
Query: 816 VGVSRLFLVSEGSVVHFSSGNFSLSAETEERNFPHGNEHLLNWARKEYGAVTSFTELKIA 995
GVSRLFLVSEGSVV FSS NFSL+AETEERNFPHGNEHLLNWARKEYGAVTSFTELKIA
Sbjct: 121 TGVSRLFLVSEGSVVQFSSANFSLTAETEERNFPHGNEHLLNWARKEYGAVTSFTELKIA 180
Query: 996 RNIYIKVGEDQVFPPTCSIGKNFLSLNYLAEYLQPKPAKGCVVS 1127
RNIYIKVGEDQVFPP C+IGKNFLSLNYLAEYLQPK A+GCV+S
Sbjct: 181 RNIYIKVGEDQVFPPKCNIGKNFLSLNYLAEYLQPKAAEGCVMS 224
>ref|NP_001182613.1| transforming growth factor beta receptor type 3 isoform b [Homo
sapiens].
Length = 850
Score = 401 bits (1031), Expect = e-112
Identities = 198/224 (88%), Positives = 206/224 (91%)
Frame = +3
Query: 456 MTLHCVVALFALISSCLATAGPEPGVQCALSPVNASHPVQALMESFTVLSGCASRGTMGR 635
MT H V+A+FAL+SSCLATAGPEPG C LSPV+ASHPVQALMESFTVLSGCASRGT G
Sbjct: 1 MTSHYVIAIFALMSSCLATAGPEPGALCELSPVSASHPVQALMESFTVLSGCASRGTTGL 60
Query: 636 PQEVHVLNLRAADQGPGQPQSEVTLHLNPISSVHIHHKPVVFLLNSPQPLVWHLKTERLA 815
PQEVHVLNLR A QGPGQ Q EVTLHLNPISSVHIHHK VVFLLNSP PLVWHLKTERLA
Sbjct: 61 PQEVHVLNLRTAGQGPGQLQREVTLHLNPISSVHIHHKSVVFLLNSPHPLVWHLKTERLA 120
Query: 816 VGVSRLFLVSEGSVVHFSSGNFSLSAETEERNFPHGNEHLLNWARKEYGAVTSFTELKIA 995
GVSRLFLVSEGSVV FSS NFSL+AETEERNFPHGNEHLLNWARKEYGAVTSFTELKIA
Sbjct: 121 TGVSRLFLVSEGSVVQFSSANFSLTAETEERNFPHGNEHLLNWARKEYGAVTSFTELKIA 180
Query: 996 RNIYIKVGEDQVFPPTCSIGKNFLSLNYLAEYLQPKPAKGCVVS 1127
RNIYIKVGEDQVFPP C+IGKNFLSLNYLAEYLQPK A+GCV+S
Sbjct: 181 RNIYIKVGEDQVFPPKCNIGKNFLSLNYLAEYLQPKAAEGCVMS 224
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,827,460
Number of extensions: 1414114
Number of successful extensions: 5667
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5652
Number of HSP's successfully gapped: 3
Length of query: 378
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 274
Effective length of database: 14,868,908
Effective search space: 4074080792
Effective search space used: 4074080792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-009994
(1136 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 509 e-141
>Sscrofa_Chr04
|| Length = 143465943
Score = 509 bits (257), Expect = e-141
Identities = 257/257 (100%)
Strand = Plus / Plus
Query: 81 ccgagtggcgctttcctcttcccagcgagtgacggagggaagtcggccgctcgggtgcgc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136575391 ccgagtggcgctttcctcttcccagcgagtgacggagggaagtcggccgctcgggtgcgc 136575450
Query: 141 ggccactttccctgcgcgattccccgagctccctgcaggaggagaaagtccccggcgggt 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136575451 ggccactttccctgcgcgattccccgagctccctgcaggaggagaaagtccccggcgggt 136575510
Query: 201 ccggatggcgtagttgcgctgcggcgcagcagctgccggagcttcgcggccgccgggcgc 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136575511 ccggatggcgtagttgcgctgcggcgcagcagctgccggagcttcgcggccgccgggcgc 136575570
Query: 261 tgggcggggaaacttcgctctgctttttcctccaacttgtggcgggtggatctccgctgg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136575571 tgggcggggaaacttcgctctgctttttcctccaacttgtggcgggtggatctccgctgg 136575630
Query: 321 acacgccgcctccgagg 337
|||||||||||||||||
Sbjct: 136575631 acacgccgcctccgagg 136575647
Score = 371 bits (187), Expect = e-100
Identities = 190/191 (99%)
Strand = Plus / Plus
Query: 513 gcaggtccagagcctggcgtccagtgtgcgctgtcgcctgtcaatgcctcccacccggtc 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136728416 gcaggtccagagcctggcgtccagtgtgcgctgtcgcctgtcaatgcctcccacccggtc 136728475
Query: 573 caggccttgatggagagcttcaccgtcctgtcggggtgtgccagccggggcaccatgggg 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136728476 caggccttgatggagagcttcaccgtcctgtcggggtgtgccagccggggcaccatgggg 136728535
Query: 633 cggccacaggaggtgcacgtcctgaacctccgcgccgctgaccaggggcccgggcagccg 692
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 136728536 cggccacaggaggtgcacgtcctgaacctccgcgccgccgaccaggggcccgggcagccg 136728595
Query: 693 cagagcgaggt 703
|||||||||||
Sbjct: 136728596 cagagcgaggt 136728606
Score = 365 bits (184), Expect = 4e-98
Identities = 184/184 (100%)
Strand = Plus / Plus
Query: 335 aggcaacttgaaaattggaaagaaggacttaaaggccatttctgatttgcaaagattgtc 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136671169 aggcaacttgaaaattggaaagaaggacttaaaggccatttctgatttgcaaagattgtc 136671228
Query: 395 tacgatctgaagaactacaggctgaggtggctgaatgggacacccttttggagaaataaa 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136671229 tacgatctgaagaactacaggctgaggtggctgaatgggacacccttttggagaaataaa 136671288
Query: 455 aatgactcttcattgtgtggttgccctgtttgccctgataagttcctgtttagcaacagc 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136671289 aatgactcttcattgtgtggttgccctgtttgccctgataagttcctgtttagcaacagc 136671348
Query: 515 aggt 518
||||
Sbjct: 136671349 aggt 136671352
Score = 359 bits (181), Expect = 2e-96
Identities = 184/185 (99%)
Strand = Plus / Plus
Query: 839 ggtatccgagggctctgtggtccatttctcatcgggaaacttctccttgtcagcagaaac 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136793641 ggtatccgagggctctgtggtccatttctcatcgggaaacttctccttgtcagcagaaac 136793700
Query: 899 agaggaaaggaacttcccccatggaaacgaacacctgctaaattgggcccgaaaggagta 958
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 136793701 agaggaaaggaacttcccccatggaaacgaacacctgttaaattgggcccgaaaggagta 136793760
Query: 959 tggggccgtcacgtcattcaccgaactcaagatagcaagaaacatttacattaaagtggg 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136793761 tggggccgtcacgtcattcaccgaactcaagatagcaagaaacatttacattaaagtggg 136793820
Query: 1019 ggaag 1023
|||||
Sbjct: 136793821 ggaag 136793825
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 700 aggtcactctgcacctgaatcccatctcctcagtccatattcaccacaagcctgtcgtgt 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136774127 aggtcactctgcacctgaatcccatctcctcagtccatattcaccacaagcctgtcgtgt 136774186
Query: 760 tcctgctcaactccccgcagcccctggtctggcatctgaagacagagagacttgcagttg 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136774187 tcctgctcaactccccgcagcccctggtctggcatctgaagacagagagacttgcagttg 136774246
Query: 820 gggtctccagacttttcttggta 842
|||||||||||||||||||||||
Sbjct: 136774247 gggtctccagacttttcttggta 136774269
Score = 210 bits (106), Expect = 1e-51
Identities = 109/110 (99%)
Strand = Plus / Plus
Query: 1022 agatcaagtgtttcctcccacgtgcagcatagggaagaattttctctccctcaattacct 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136798222 agatcaagtgtttcctcccacgtgcagcatagggaagaattttctctccctcaattacct 136798281
Query: 1082 cgccgagtacctccagcccaaaccggcaaagggctgcgtggtgtccggcc 1131
|||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 136798282 cgccgagtacctccagcccaaaccggcagagggctgcgtggtgtccggcc 136798331
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,369,723
Number of extensions: 180
Number of successful extensions: 180
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 6
Length of query: 1136
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1115
Effective length of database: 2,808,413,156
Effective search space: 3131380668940
Effective search space used: 3131380668940
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)